The title compounds, (C2H6NO2)2[NbOF5], (I), and (C3H8NO2)2[NbOF5]·2H2O, (II), are built from isolated distorted octahedral [NbOF5]2- complex anions, amino acid cations and water molecules [for (II)]. In the pentafluoridooxidoniobate(V) anions, the Nb and O atoms, and the F atoms in trans positions with respect to the O atoms, are disordered about an inversion centre for both structures. The Nb atoms are shifted from the inversion centres by distances of 0.1455 (1) and 0.1263 (2) Å for (I) and (II), respectively. The Nb=O and Nb-F(trans) bond lengths are 1.7952 (3) and 2.0862 (3) Å, respectively, for (I), and 1.8037 (7) and 2.0556 (7) Å for (II). In the crystal structures, cations and water molecules [for (II)] are linked to the [NbOF5]2- anions via hydrogen bonds. This study demonstrates the possibility of true geometry determination of disordered [NbOF5]2- complex anions in centrosymmetric structures.
Supporting information
CCDC references: 710740; 710741
Compound (I) was synthesized by the reaction of Nb2O5 (1.33 g, 5 mmol) with
glycine (1.50 g, 20 mmol) in a solution of hydrofluoric acid (48%, 40 ml). The
solution was allowed to evaporate slowly at room temperature. After a few
days, colourless crystals suitable for X-ray diffraction were obtained. These
were separated from the solution, washed with a small amount of acetone and
dried to constant weight in air.
Compound (II) was synthesized using a route similar to that for (I), by the
reaction of Nb2O5 (1.33 g, 5 mmol) with β-alanine (1.78 g, 20 mmol) in a
solution of hydrofluoric acid (48%, 40 ml).
The Nb1 atoms were refined with site occupancy 0.5. Atoms F1 and O1 were refined
together, assuming that their positional and displacement parameters are the
same, with site occupancies of 0.5. For the glycinium and β-alaninium
cations, after checking their presence in difference maps, all H atoms were
placed in geometrically idealized positions and refined in the riding-model
approximation, with C—H = 0.99 or 0.98 Å, N—H = 0.91 or 0.90 Å and
O—H = 0.84 or 0.83 Å, and with Uiso(H) = 1.2 or
1.5Ueq(C,N,O). For water molecules, the H atoms were located in a
difference map and refined with Uiso(H) = 1.5Ueq(O).
For both compounds, data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2008).
(I) bis(glycinium) pentafluoridooxidoniobate(V)
top
Crystal data top
(C2H6NO2)2[NbOF5] | F(000) = 352 |
Mr = 356.07 | Dx = 2.263 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1882 reflections |
a = 5.3532 (1) Å | θ = 3.8–50.5° |
b = 10.8585 (3) Å | µ = 1.24 mm−1 |
c = 8.9913 (2) Å | T = 173 K |
β = 90.022 (1)° | Spherical, colourless |
V = 522.64 (2) Å3 | 0.28 × 0.14 (radius) mm |
Z = 2 | |
Data collection top
Bruker SMART 1000 CCD area-detector diffractometer | 5525 independent reflections |
Radiation source: fine-focus sealed tube | 5027 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
Detector resolution: 8.33 pixels mm-1 | θmax = 50.5°, θmin = 2.9° |
ω scans | h = −11→11 |
Absorption correction: for a sphere (SADABS; Bruker, 2003) | k = −23→21 |
Tmin = 0.669, Tmax = 0.723 | l = −19→19 |
19292 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | H-atom parameters constrained |
wR(F2) = 0.075 | w = 1/[σ2(Fo2) + (0.035P)2 + 0.0886P] where P = (Fo2 + 2Fc2)/3 |
S = 1.11 | (Δ/σ)max = 0.011 |
5525 reflections | Δρmax = 1.00 e Å−3 |
85 parameters | Δρmin = −0.95 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0379 (13) |
Crystal data top
(C2H6NO2)2[NbOF5] | V = 522.64 (2) Å3 |
Mr = 356.07 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 5.3532 (1) Å | µ = 1.24 mm−1 |
b = 10.8585 (3) Å | T = 173 K |
c = 8.9913 (2) Å | 0.28 × 0.14 (radius) mm |
β = 90.022 (1)° | |
Data collection top
Bruker SMART 1000 CCD area-detector diffractometer | 5525 independent reflections |
Absorption correction: for a sphere (SADABS; Bruker, 2003) | 5027 reflections with I > 2σ(I) |
Tmin = 0.669, Tmax = 0.723 | Rint = 0.033 |
19292 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.028 | 0 restraints |
wR(F2) = 0.075 | H-atom parameters constrained |
S = 1.11 | Δρmax = 1.00 e Å−3 |
5525 reflections | Δρmin = −0.95 e Å−3 |
85 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Nb1 | 0.009533 (12) | 0.507853 (5) | 0.511909 (6) | 0.00829 (1) | 0.50 |
F1 | 0.11202 (5) | 0.59455 (3) | 0.67061 (3) | 0.01574 (4) | 0.50 |
O1 | 0.11202 (5) | 0.59455 (3) | 0.67061 (3) | 0.01574 (4) | 0.50 |
F2 | 0.17782 (6) | 0.61073 (3) | 0.36979 (3) | 0.02106 (5) | |
F3 | 0.28697 (5) | 0.39493 (3) | 0.51657 (3) | 0.01911 (5) | |
O2 | 0.60417 (6) | 0.62252 (3) | −0.12855 (3) | 0.01781 (5) | |
O3 | 1.00718 (5) | 0.62993 (3) | −0.05875 (3) | 0.01441 (4) | |
H3 | 1.0333 | 0.6216 | −0.1503 | 0.022* | |
N1 | 0.44755 (6) | 0.70615 (3) | 0.13990 (3) | 0.01485 (5) | |
H1A | 0.4570 | 0.7898 | 0.1363 | 0.022* | |
H1B | 0.3776 | 0.6827 | 0.2276 | 0.022* | |
H1C | 0.3519 | 0.6785 | 0.0632 | 0.022* | |
C1 | 0.76489 (6) | 0.63467 (3) | −0.03415 (3) | 0.01119 (4) | |
C2 | 0.70120 (6) | 0.65334 (3) | 0.12786 (3) | 0.01340 (5) | |
H2A | 0.7082 | 0.5735 | 0.1809 | 0.016* | |
H2B | 0.8240 | 0.7097 | 0.1742 | 0.016* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Nb1 | 0.00946 (2) | 0.00882 (2) | 0.00660 (2) | 0.00033 (1) | 0.00060 (1) | −0.00023 (1) |
F1 | 0.01719 (8) | 0.01886 (8) | 0.01118 (7) | −0.00143 (7) | 0.00056 (6) | −0.00375 (6) |
O1 | 0.01719 (8) | 0.01886 (8) | 0.01118 (7) | −0.00143 (7) | 0.00056 (6) | −0.00375 (6) |
F2 | 0.02009 (9) | 0.02075 (9) | 0.02233 (9) | −0.00249 (8) | 0.00680 (8) | 0.00799 (8) |
F3 | 0.01452 (8) | 0.01736 (8) | 0.02543 (10) | 0.00518 (7) | 0.00000 (8) | −0.00019 (8) |
O2 | 0.01470 (8) | 0.02780 (12) | 0.01092 (7) | −0.00077 (9) | −0.00224 (7) | −0.00257 (8) |
O3 | 0.01184 (7) | 0.02010 (9) | 0.01129 (7) | 0.00072 (7) | 0.00138 (6) | −0.00087 (7) |
N1 | 0.01280 (8) | 0.01951 (10) | 0.01223 (8) | −0.00037 (8) | 0.00254 (7) | −0.00162 (8) |
C1 | 0.01213 (8) | 0.01251 (8) | 0.00894 (7) | −0.00012 (7) | 0.00041 (7) | −0.00016 (7) |
C2 | 0.01432 (10) | 0.01723 (10) | 0.00865 (8) | 0.00147 (8) | 0.00038 (7) | 0.00044 (7) |
Geometric parameters (Å, º) top
Nb1—Nb1i | 0.2921 (1) | F3—Nb1i | 1.9233 (3) |
Nb1—O1 | 1.7952 (3) | O2—C1 | 1.2155 (4) |
Nb1—F1i | 2.0862 (3) | O3—C1 | 1.3169 (4) |
Nb1—F2 | 1.9218 (3) | O3—H3 | 0.8400 |
Nb1—F2i | 1.9484 (3) | N1—C2 | 1.4780 (5) |
Nb1—F3i | 1.9233 (3) | N1—H1A | 0.9100 |
Nb1—F3 | 1.9264 (3) | N1—H1B | 0.9100 |
Nb1—F1 | 1.7952 (3) | N1—H1C | 0.9100 |
Nb1—O1i | 2.0862 (3) | C1—C2 | 1.5099 (4) |
F1—Nb1i | 2.0862 (3) | C2—H2A | 0.9900 |
F2—Nb1i | 1.9484 (3) | C2—H2B | 0.9900 |
| | | |
F1—Nb1—F2 | 94.616 (13) | F3—Nb1—O1i | 85.301 (12) |
F1—Nb1—F3i | 94.011 (13) | F2i—Nb1—O1i | 85.223 (12) |
F2—Nb1—F3i | 88.823 (13) | C1—O3—H3 | 109.5 |
F1—Nb1—F3 | 94.653 (13) | C2—N1—H1A | 109.5 |
F2—Nb1—F3 | 91.312 (13) | C2—N1—H1B | 109.5 |
F3i—Nb1—F3 | 171.296 (3) | H1A—N1—H1B | 109.5 |
F1—Nb1—F2i | 94.006 (13) | C2—N1—H1C | 109.5 |
F2—Nb1—F2i | 171.377 (3) | H1A—N1—H1C | 109.5 |
F3i—Nb1—F2i | 90.600 (13) | H1B—N1—H1C | 109.5 |
F3—Nb1—F2i | 87.963 (13) | O2—C1—O3 | 125.13 (3) |
F1—Nb1—F1i | 179.228 (4) | O2—C1—C2 | 121.89 (3) |
F2—Nb1—F1i | 86.155 (12) | O3—C1—C2 | 112.96 (3) |
F3i—Nb1—F1i | 86.025 (12) | N1—C2—C1 | 109.30 (3) |
F3—Nb1—F1i | 85.301 (12) | N1—C2—H2A | 109.8 |
F2i—Nb1—F1i | 85.223 (12) | C1—C2—H2A | 109.8 |
F1—Nb1—O1i | 179.228 (4) | N1—C2—H2B | 109.8 |
F2—Nb1—O1i | 86.155 (12) | C1—C2—H2B | 109.8 |
F3i—Nb1—O1i | 86.025 (12) | H2A—C2—H2B | 108.3 |
| | | |
O2—C1—C2—N1 | −24.12 (5) | O3—C1—C2—N1 | 157.61 (3) |
Symmetry code: (i) −x, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···(F1/O1)ii | 0.84 | 1.69 | 2.5268 (4) | 174 |
N1—H1A···O2iii | 0.91 | 2.45 | 2.9149 (5) | 112 |
N1—H1A···(F1/O1)iv | 0.91 | 2.25 | 2.8259 (4) | 120 |
N1—H1A···F3v | 0.91 | 2.25 | 2.8640 (4) | 124 |
N1—H1B···F2 | 0.91 | 1.84 | 2.7264 (4) | 164 |
N1—H1C···O3vi | 0.91 | 2.21 | 3.0707 (4) | 158 |
N1—H1C···O2 | 0.91 | 2.27 | 2.7121 (4) | 109 |
C2—H2A···(F1/O1)vii | 0.99 | 2.46 | 3.3952 (4) | 158 |
Symmetry codes: (ii) x+1, y, z−1; (iii) x, −y+3/2, z+1/2; (iv) x, −y+3/2, z−1/2; (v) −x+1, y+1/2, −z+1/2; (vi) x−1, y, z; (vii) −x+1, −y+1, −z+1. |
(II) bis(
β-alaninium) pentafluoridooxidoniobate(V) dihydrate
top
Crystal data top
(C3H8NO2)2[NbOF5]·2H2O | Z = 1 |
Mr = 420.15 | F(000) = 212 |
Triclinic, P1 | Dx = 1.872 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.9552 (8) Å | Cell parameters from 3133 reflections |
b = 7.2092 (8) Å | θ = 31.0–3.7° |
c = 8.0205 (9) Å | µ = 0.90 mm−1 |
α = 74.609 (2)° | T = 203 K |
β = 86.223 (2)° | Prism, colourless |
γ = 74.016 (2)° | 0.27 × 0.25 × 0.24 mm |
V = 372.74 (7) Å3 | |
Data collection top
Bruker SMART 1000 CCD area-detector diffractometer | 2215 independent reflections |
Radiation source: fine-focus sealed tube | 2114 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
Detector resolution: 8.33 pixels mm-1 | θmax = 31.4°, θmin = 3.7° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | k = −10→10 |
Tmin = 0.794, Tmax = 0.814 | l = −11→11 |
4033 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.025 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.064 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0266P)2 + 0.1346P] where P = (Fo2 + 2Fc2)/3 |
2215 reflections | (Δ/σ)max = 0.008 |
108 parameters | Δρmax = 0.53 e Å−3 |
0 restraints | Δρmin = −0.56 e Å−3 |
Crystal data top
(C3H8NO2)2[NbOF5]·2H2O | γ = 74.016 (2)° |
Mr = 420.15 | V = 372.74 (7) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.9552 (8) Å | Mo Kα radiation |
b = 7.2092 (8) Å | µ = 0.90 mm−1 |
c = 8.0205 (9) Å | T = 203 K |
α = 74.609 (2)° | 0.27 × 0.25 × 0.24 mm |
β = 86.223 (2)° | |
Data collection top
Bruker SMART 1000 CCD area-detector diffractometer | 2215 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | 2114 reflections with I > 2σ(I) |
Tmin = 0.794, Tmax = 0.814 | Rint = 0.021 |
4033 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.025 | 0 restraints |
wR(F2) = 0.064 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | Δρmax = 0.53 e Å−3 |
2215 reflections | Δρmin = −0.56 e Å−3 |
108 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Nb1 | 0.99134 (4) | 0.00837 (4) | 0.98533 (3) | 0.01554 (3) | 0.50 |
F1 | 0.86210 (9) | 0.08616 (10) | 0.78035 (8) | 0.02602 (15) | 0.50 |
O1 | 0.86210 (9) | 0.08616 (10) | 0.78035 (8) | 0.02602 (15) | 0.50 |
F2 | 0.82582 (9) | 0.22574 (9) | 1.06818 (8) | 0.02974 (15) | |
F3 | 0.81570 (9) | −0.15627 (9) | 1.09415 (8) | 0.03148 (14) | |
O2 | 0.75089 (10) | 0.90443 (10) | 0.48842 (9) | 0.02560 (17) | |
O3 | 1.06682 (10) | 0.71644 (11) | 0.53072 (9) | 0.02688 (17) | |
H3 | 1.0836 | 0.7918 | 0.4361 | 0.040* | |
O4 | 0.52264 (10) | 0.69774 (10) | 0.29964 (10) | 0.02650 (17) | |
H1 | 0.424 (2) | 0.770 (2) | 0.2623 (19) | 0.040* | |
H2 | 0.611 (2) | 0.749 (2) | 0.2484 (19) | 0.040* | |
N1 | 0.46814 (11) | 0.69786 (11) | 0.68341 (10) | 0.02143 (17) | |
H1A | 0.4902 | 0.7650 | 0.5753 | 0.032* | |
H1B | 0.3448 | 0.7549 | 0.7168 | 0.032* | |
H1C | 0.4779 | 0.5701 | 0.6856 | 0.032* | |
C1 | 0.87584 (13) | 0.76627 (12) | 0.57476 (11) | 0.01814 (18) | |
C2 | 0.83121 (13) | 0.63095 (13) | 0.74223 (12) | 0.02096 (19) | |
H2A | 0.9257 | 0.6220 | 0.8313 | 0.025* | |
H2B | 0.8509 | 0.4966 | 0.7267 | 0.025* | |
C3 | 0.61968 (14) | 0.70374 (14) | 0.80351 (12) | 0.0227 (2) | |
H3A | 0.6033 | 0.6200 | 0.9188 | 0.027* | |
H3B | 0.5971 | 0.8410 | 0.8127 | 0.027* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Nb1 | 0.01307 (4) | 0.01579 (4) | 0.01655 (6) | −0.00491 (3) | 0.00424 (4) | −0.00204 (4) |
F1 | 0.0222 (3) | 0.0363 (3) | 0.0179 (3) | −0.0084 (2) | −0.0015 (2) | −0.0032 (2) |
O1 | 0.0222 (3) | 0.0363 (3) | 0.0179 (3) | −0.0084 (2) | −0.0015 (2) | −0.0032 (2) |
F2 | 0.0272 (3) | 0.0278 (2) | 0.0324 (3) | −0.0016 (2) | 0.0070 (2) | −0.0124 (2) |
F3 | 0.0304 (2) | 0.0400 (3) | 0.0302 (3) | −0.0232 (2) | 0.0098 (2) | −0.0074 (2) |
O2 | 0.0228 (3) | 0.0231 (3) | 0.0254 (3) | −0.0047 (2) | −0.0006 (3) | 0.0017 (2) |
O3 | 0.0185 (3) | 0.0318 (3) | 0.0252 (3) | −0.0065 (2) | 0.0031 (3) | 0.0003 (3) |
O4 | 0.0195 (3) | 0.0250 (3) | 0.0335 (3) | −0.0086 (2) | 0.0011 (3) | −0.0024 (3) |
N1 | 0.0181 (3) | 0.0215 (3) | 0.0243 (3) | −0.0070 (2) | 0.0022 (3) | −0.0039 (3) |
C1 | 0.0189 (3) | 0.0193 (3) | 0.0181 (3) | −0.0080 (3) | −0.0002 (3) | −0.0050 (3) |
C2 | 0.0199 (3) | 0.0222 (3) | 0.0191 (4) | −0.0079 (3) | −0.0019 (3) | 0.0005 (3) |
C3 | 0.0243 (4) | 0.0274 (3) | 0.0203 (4) | −0.0121 (3) | 0.0042 (3) | −0.0082 (3) |
Geometric parameters (Å, º) top
Nb1—Nb1i | 0.2551 (5) | O3—H3 | 0.8300 |
Nb1—F1i | 2.0556 (7) | O4—H1 | 0.761 (14) |
Nb1—O1 | 1.8037 (7) | O4—H2 | 0.836 (16) |
Nb1—F2 | 1.9186 (7) | N1—C3 | 1.4902 (13) |
Nb1—F2i | 1.9443 (7) | N1—H1A | 0.9000 |
Nb1—F3 | 1.9420 (7) | N1—H1B | 0.9000 |
Nb1—F3i | 1.9129 (7) | N1—H1C | 0.9000 |
Nb1—O1i | 2.0556 (7) | C1—C2 | 1.5062 (12) |
F1—Nb1i | 2.0556 (7) | C2—C3 | 1.5159 (13) |
F2—Nb1i | 1.9443 (7) | C2—H2A | 0.9800 |
F3—Nb1i | 1.9129 (7) | C2—H2B | 0.9800 |
O2—C1 | 1.2097 (10) | C3—H3A | 0.9800 |
O3—C1 | 1.3270 (11) | C3—H3B | 0.9800 |
| | | |
F1—Nb1—F3i | 94.73 (3) | C3—N1—H1A | 109.5 |
F1—Nb1—F2 | 94.04 (3) | C3—N1—H1B | 109.5 |
F3i—Nb1—F2 | 90.42 (3) | H1A—N1—H1B | 109.5 |
F1—Nb1—F3 | 92.76 (3) | C3—N1—H1C | 109.5 |
F3i—Nb1—F3 | 172.461 (14) | H1A—N1—H1C | 109.5 |
F2—Nb1—F3 | 89.86 (3) | H1B—N1—H1C | 109.5 |
F1—Nb1—F2i | 93.42 (3) | O2—C1—O3 | 123.46 (8) |
F3i—Nb1—F2i | 89.95 (3) | O2—C1—C2 | 123.74 (8) |
F2—Nb1—F2i | 172.466 (14) | O3—C1—C2 | 112.79 (7) |
F3—Nb1—F2i | 88.80 (3) | C1—C2—C3 | 112.53 (7) |
F1—Nb1—F1i | 178.80 (2) | C1—C2—H2A | 109.1 |
F3i—Nb1—F1i | 86.19 (3) | C3—C2—H2A | 109.1 |
F2—Nb1—F1i | 86.70 (3) | C1—C2—H2B | 109.1 |
F3—Nb1—F1i | 86.30 (3) | C3—C2—H2B | 109.1 |
F2i—Nb1—F1i | 85.81 (3) | H2A—C2—H2B | 107.8 |
F1—Nb1—O1i | 178.80 (2) | N1—C3—C2 | 111.81 (8) |
F3i—Nb1—O1i | 86.19 (3) | N1—C3—H3A | 109.3 |
F2—Nb1—O1i | 86.70 (3) | C2—C3—H3A | 109.3 |
F3—Nb1—O1i | 86.30 (3) | N1—C3—H3B | 109.3 |
F2i—Nb1—O1i | 85.81 (3) | C2—C3—H3B | 109.3 |
C1—O3—H3 | 109.5 | H3A—C3—H3B | 107.9 |
H1—O4—H2 | 105.4 (14) | | |
| | | |
C1—C2—C3—N1 | 65.52 (10) | O2—C1—C2—C3 | −8.02 (14) |
O3—C1—C2—C3 | 172.70 (9) | | |
Symmetry code: (i) −x+2, −y, −z+2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···(F1/O1)ii | 0.83 | 1.79 | 2.6143 (9) | 170 |
N1—H1A···O2 | 0.90 | 2.29 | 2.9159 (11) | 126 |
N1—H1A···O4 | 0.90 | 2.37 | 3.0766 (12) | 135 |
N1—H1A···O2iii | 0.90 | 2.45 | 2.8660 (10) | 108 |
N1—H1B···F2iv | 0.90 | 2.04 | 2.8069 (10) | 142 |
N1—H1C···O4v | 0.90 | 1.90 | 2.8019 (12) | 175 |
O4—H1···(F1/O1)v | 0.761 (14) | 1.979 (15) | 2.7201 (9) | 164.6 (15) |
O4—H2···F3vi | 0.836 (16) | 1.967 (16) | 2.7923 (10) | 168.9 (16) |
Symmetry codes: (ii) −x+2, −y+1, −z+1; (iii) −x+1, −y+2, −z+1; (iv) −x+1, −y+1, −z+2; (v) −x+1, −y+1, −z+1; (vi) x, y+1, z−1. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | (C2H6NO2)2[NbOF5] | (C3H8NO2)2[NbOF5]·2H2O |
Mr | 356.07 | 420.15 |
Crystal system, space group | Monoclinic, P21/c | Triclinic, P1 |
Temperature (K) | 173 | 203 |
a, b, c (Å) | 5.3532 (1), 10.8585 (3), 8.9913 (2) | 6.9552 (8), 7.2092 (8), 8.0205 (9) |
α, β, γ (°) | 90, 90.022 (1), 90 | 74.609 (2), 86.223 (2), 74.016 (2) |
V (Å3) | 522.64 (2) | 372.74 (7) |
Z | 2 | 1 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 1.24 | 0.90 |
Crystal size (mm) | 0.28 × 0.14 (radius) | 0.27 × 0.25 × 0.24 |
|
Data collection |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | For a sphere (SADABS; Bruker, 2003) | Multi-scan (SADABS; Bruker, 2003) |
Tmin, Tmax | 0.669, 0.723 | 0.794, 0.814 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19292, 5525, 5027 | 4033, 2215, 2114 |
Rint | 0.033 | 0.021 |
(sin θ/λ)max (Å−1) | 1.086 | 0.733 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.075, 1.11 | 0.025, 0.064, 1.15 |
No. of reflections | 5525 | 2215 |
No. of parameters | 85 | 108 |
H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.00, −0.95 | 0.53, −0.56 |
Selected bond lengths (Å) for (I) topNb1—O1 | 1.7952 (3) | Nb1—F2i | 1.9484 (3) |
Nb1—F1i | 2.0862 (3) | Nb1—F3i | 1.9233 (3) |
Nb1—F2 | 1.9218 (3) | Nb1—F3 | 1.9264 (3) |
Symmetry code: (i) −x, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···(F1/O1)ii | 0.84 | 1.69 | 2.5268 (4) | 173.7 |
N1—H1A···O2iii | 0.91 | 2.45 | 2.9149 (5) | 112.1 |
N1—H1A···(F1/O1)iv | 0.91 | 2.25 | 2.8259 (4) | 120.3 |
N1—H1A···F3v | 0.91 | 2.25 | 2.8640 (4) | 124.2 |
N1—H1B···F2 | 0.91 | 1.84 | 2.7264 (4) | 163.8 |
N1—H1C···O3vi | 0.91 | 2.21 | 3.0707 (4) | 157.6 |
N1—H1C···O2 | 0.91 | 2.27 | 2.7121 (4) | 109.2 |
Symmetry codes: (ii) x+1, y, z−1; (iii) x, −y+3/2, z+1/2; (iv) x, −y+3/2, z−1/2; (v) −x+1, y+1/2, −z+1/2; (vi) x−1, y, z. |
Selected bond lengths (Å) for (II) topNb1—F1i | 2.0556 (7) | Nb1—F2i | 1.9443 (7) |
Nb1—O1 | 1.8037 (7) | Nb1—F3 | 1.9420 (7) |
Nb1—F2 | 1.9186 (7) | Nb1—F3i | 1.9129 (7) |
Symmetry code: (i) −x+2, −y, −z+2. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···(F1/O1)ii | 0.83 | 1.79 | 2.6143 (9) | 169.7 |
N1—H1A···O2 | 0.90 | 2.29 | 2.9159 (11) | 126.3 |
N1—H1A···O4 | 0.90 | 2.37 | 3.0766 (12) | 135.4 |
N1—H1A···O2iii | 0.90 | 2.45 | 2.8660 (10) | 108.3 |
N1—H1B···F2iv | 0.90 | 2.04 | 2.8069 (10) | 142.0 |
N1—H1C···O4v | 0.90 | 1.90 | 2.8019 (12) | 175.1 |
O4—H1···(F1/O1)v | 0.761 (14) | 1.979 (15) | 2.7201 (9) | 164.6 (15) |
O4—H2···F3vi | 0.836 (16) | 1.967 (16) | 2.7923 (10) | 168.9 (16) |
Symmetry codes: (ii) −x+2, −y+1, −z+1; (iii) −x+1, −y+2, −z+1; (iv) −x+1, −y+1, −z+2; (v) −x+1, −y+1, −z+1; (vi) x, y+1, z−1. |
Recently, hybrid organic–inorganic compounds have been synthesized and intensively studied due to their exceptional importance for designing materials with structure-dependent properties, such as nonlinear optical activity, superionic conductivity, and piezoelectric and ferroelectric properties. Special attention has been given to the compounds of the early transition metals with distorted coordination polyhedra, in which the metal atoms are displaced from the centre of the polyhedron toward a vertex, edge or face. These metals include niobium, characterized by the displacement of the Nb atom from the centre of the octahedron in the [NbOF5]2- anion in the direction of the O atom along the Nb═O bond, caused by electronic effects [`primary' distortion (Welk et al., 2002; Izumi et al., 2005)]. Sometimes in the [NbOF5]2- anion, the Nb atom is located on or near any element of symmetry that results in a statistical arrangement of ligands around it and this complicates analysis of the accurate geometry of the complex anions. The present work deals with the determination of the crystal structures of bis(glycinium) pentafluoridooxidoniobate(V), (I), and bis(β-alaninium) pentafluoridooxidoniobate(V) dihydrate, (II), and the study of the disordering of the [NbOF5]2- complex anions in these compounds.
For both structures, the locations of the Nb atoms at the inversion centres were determined by direct methods and confirmed by the Patterson function. Thus, initially the structures of (I) and (II) were solved with the Nb atoms located at centres of symmetry [Wyckoff positions 2a for (I) and 1a for (II)] and atoms F1 and O1 occupied the same position. Refinement by least-squares method with anisotropic displacement parameters for all non-H atoms resulted in R [F2 > 2σ(F2)] values of 0.0579 for (I) and 0.0255 for (II). At this stage, the lengths of the Nb1—F1/O1 bonds were approximately equal to the average mean values of Nb═O and Nb—F(trans) bonds for ordered structures (Pushilin et al., 2007; Zhu et al., 2005; Zhu & Tang, 2005, 2006; Sarin et al., 1977), namely 1.939 Å for (I) and 1.930 Å for (II). Analysis of the anisotropic displacement parameters showed that the Nb1 atoms had significant thermal displacement along the Nb1—F1/O1 directions in both structures (Fig. 1a and c). The maximal axis of the Nb1 displacement ellipsoid (σ1) had angles with the Nb1—F1/O1 bond of 8° for (I) and 1° for (II), which make no physical sense, since the Nb═O bond is strongest in [NbOF5]2- anions (Kharitonov & Buslaev, 1964; Welk et al., 2002; Izumi et al., 2005). In addition, for difference electron-density syntheses with isotropic displacement parameters for the Nb1 atoms, the highest peaks (Q1) [28 e Å-3 for (I) and 10 e Å-3 for (II)] were located along the Nb1—F1/O1 bonds at distances from the Nb atoms of 0.33 and 0.47 Å for (I) and (II), respectively. In our opinion, the above factors indicate displacement of the Nb1 atoms from the centres of symmetry towards the O atoms along the Nb1—F1/O1 directions. We have checked this assumption by placing Nb1 atoms approximately in the middle of the Nb1···Q1 distances with half-occupancy of the Nb1 sites. Refinement led to determination of the Nb1 positions at distances of 0.146 Å for (I) and 0.128 Å for (II) from the centres of symmetry and demonstrated satisfactory anisotropy of the Nb1 atoms (Fig. 1b and d) [angles between σ1 and the Nb1—F1/O1 direction are 54° for (I) and 37° for (II)]. The resulting geometric parameters of the [NbOF5]2- anion are comparable with those of the same anions for ordered structures. For similar reasons, the Nb atom was moved from the twofold rotation axis in the Na2[NbOF5] structure (Stomberg, 1984), which also resulted in a more accurate geometry for the [NbOF5]2- anion.
Due to the statistical distribution of the Nb atoms in (I) and (II), one should expect splitting of the ligand positions as well. Refinement of models where ligand positions were split into two sites was performed for both structures. However, in our experiments these positions were indistinguishable within the limits of experimental error. Thus, in (I) and (II) the complex anions are statistically disordered about an inversion centre. The Nb atoms are coordinated by five F atoms and one O atom, forming distorted octahedra. The Nb—F bond in a trans position to the Nb═O bond is significantly longer than theother four Nb—F bonds in the polyhedra (Tables 1 and 3). The Nb1 atoms are displaced from the equatorial planes of the octahedra in the direction of the axial atoms O1 by 0.1455 (1) and 0.1263 (2) Å for (I) and (II), respectively.
The asymmetric unit of (I) contains one-half of an [NbOF5]2- anion and one glycinium cation (C2H6NO2+). The glycinium cation is protonated on the amine group and thus carries a positive charge. The C1—O3 bonds [1.3169 (4) Å] are much longer than C1—O2 [1.2158 (4) Å], indicating localized single and double bonds, respectively. The glycinium cations are linked by intermolecular N—H···O hydrogen bonds to form layers parallel to the ac plane (Fig. 2). By a combination of N—H···F, N—H···O and O—H···F hydrogen bonds (Table 2 and Fig. 3), some of which are weak and bifurcated or trifurcated, the layers are linked to the [NbOF5]2- anions. It should be noted that the structure includes two short O—H···F/O hydrogen bonds between the hydroxyl groups of the glycinium cations and the axial atoms F1 and O1 having the highest negative charge in the [NbOF5]2- anion (Izumi et al., 2005). Also, in the structure of (I) there is a very weak non-covalent interaction, F3(δ-)···C1iii(δ+) [2.8446 (5) Å; symmetry code: (iii) ? Please complete], which is slightly less than the sum of the van der Waals radii of F and C atoms (3.17 Å; Bondi, 1964). Similar short contacts between the F atom and the C atom of a carboxyl group are also present in the structures of bis(DL-valinium) pentafluoridooxidoniobate(V) (2.840 Å; Pushilin et al., 2007), sodium tris(glycinium) bis(hexafluorosilicate) glycine trisolvate (2.870 Å; Narayana et al., 2007) and 4-methylbenzoic acidium hexafluoro-arsenate p-toluic acid (2.920 and 2.940 Å; Lindeman et al., 2005).
The asymmetric unit of (II) contains one-half of an [NbOF5]2- anion, one β-alaninium cation (C3H8NO2+) and one water molecule. The positive charge of the cation is localized on the amine group. The single (C1—O3) and double (C1═O2) bonds in the carboxyl group are 1.3270 (11) and 1.2097 (10) Å, respectively. The cations and water molecules are linked by N—H···O hydrogen bonds to form chains along the b axis and these chains are packed into layers parallel to the ab plane (Fig. 4 and Table 4). The anions, cations and water molecules are linked by a network of O—H···F and N—H···F hydrogen bonds into a three-dimensional framework (Fig. 5). As in (I), the shortest hydrogen bonds are formed with atoms F1 and O1 of the [NbOF5]2- anion.