The title compound, C
9H
11N
3S
2, crystallizes with two molecules in the asymmetric unit, which differ mainly in the degree of planarity. The C=N double bonds are
trans configured. Geometric parameters are in the usual ranges. The crystal structure is characterized by N—H
N and N—H
S hydrogen bonds.
Supporting information
CCDC reference: 630464
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.002 Å
- R factor = 0.031
- wR factor = 0.084
- Data-to-parameter ratio = 22.9
checkCIF/PLATON results
No syntax errors found
Alert level B
PLAT230_ALERT_2_B Hirshfeld Test Diff for S1 - C1 .. 7.28 su
Alert level C
PLAT230_ALERT_2_C Hirshfeld Test Diff for S1A - C1A .. 5.68 su
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 4
0 ALERT level A = In general: serious problem
1 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
2 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PLATON.
4-(Methylsulfanyl)benzaldehyde thiosemicarbazone
top
Crystal data top
C9H11N3S2 | Z = 4 |
Mr = 225.33 | F(000) = 472 |
Triclinic, P1 | Dx = 1.373 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.2052 (4) Å | Cell parameters from 35812 reflections |
b = 9.1947 (5) Å | θ = 2.6–30.3° |
c = 15.5994 (8) Å | µ = 0.45 mm−1 |
α = 106.558 (5)° | T = 173 K |
β = 97.573 (3)° | Block, light orange |
γ = 100.110 (4)° | 0.38 × 0.36 × 0.33 mm |
V = 1089.76 (10) Å3 | |
Data collection top
Stoe IPDS-II two-circle diffractometer | 6421 independent reflections |
Radiation source: fine-focus sealed tube | 6026 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
ω scans | θmax = 30.2°, θmin = 2.6° |
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) | h = −11→11 |
Tmin = 0.847, Tmax = 0.865 | k = −12→12 |
36432 measured reflections | l = −22→19 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.084 | w = 1/[σ2(Fo2) + (0.0409P)2 + 0.3428P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
6421 reflections | Δρmax = 0.38 e Å−3 |
280 parameters | Δρmin = −0.29 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.048 (3) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.67198 (3) | 0.07742 (3) | 0.631875 (17) | 0.02549 (7) | |
S2 | −0.25814 (4) | 0.65923 (4) | 0.88918 (2) | 0.03788 (9) | |
N1 | 0.39725 (14) | 0.17237 (13) | 0.57770 (7) | 0.0312 (2) | |
H1A | 0.390 (2) | 0.109 (2) | 0.5230 (12) | 0.038 (4)* | |
H1B | 0.310 (2) | 0.2118 (19) | 0.5896 (11) | 0.038 (4)* | |
N2 | 0.48514 (12) | 0.23271 (11) | 0.73196 (6) | 0.02565 (18) | |
H2 | 0.547 (2) | 0.222 (2) | 0.7774 (12) | 0.041 (4)* | |
N3 | 0.34361 (12) | 0.29195 (11) | 0.74363 (6) | 0.02462 (17) | |
C1 | 0.50545 (13) | 0.16371 (12) | 0.64601 (7) | 0.02302 (18) | |
C2 | 0.33505 (13) | 0.36393 (12) | 0.82623 (7) | 0.02456 (19) | |
H2B | 0.4232 | 0.3739 | 0.8750 | 0.029* | |
C3 | −0.19202 (19) | 0.81155 (15) | 0.99705 (10) | 0.0397 (3) | |
H3A | −0.1606 | 0.7667 | 1.0451 | 0.059* | |
H3B | −0.2848 | 0.8631 | 1.0104 | 0.059* | |
H3C | −0.0946 | 0.8877 | 0.9944 | 0.059* | |
C11 | 0.18868 (13) | 0.43033 (12) | 0.84461 (7) | 0.02277 (18) | |
C12 | 0.03851 (14) | 0.38485 (13) | 0.77929 (7) | 0.0264 (2) | |
H12 | 0.0276 | 0.3037 | 0.7238 | 0.032* | |
C13 | −0.09340 (14) | 0.45763 (14) | 0.79535 (8) | 0.0289 (2) | |
H13 | −0.1937 | 0.4270 | 0.7504 | 0.035* | |
C14 | −0.08065 (13) | 0.57645 (13) | 0.87757 (8) | 0.0262 (2) | |
C15 | 0.06585 (14) | 0.61834 (12) | 0.94438 (7) | 0.0268 (2) | |
H15 | 0.0748 | 0.6965 | 1.0009 | 0.032* | |
C16 | 0.19843 (13) | 0.54492 (12) | 0.92766 (7) | 0.02488 (19) | |
H16 | 0.2973 | 0.5731 | 0.9734 | 0.030* | |
S1A | 0.38986 (4) | −0.08951 (3) | 0.102549 (17) | 0.02913 (8) | |
S2A | 1.06187 (4) | 0.93546 (3) | 0.64566 (2) | 0.03645 (9) | |
N1A | 0.61386 (14) | 0.17483 (12) | 0.12934 (7) | 0.0318 (2) | |
H1C | 0.609 (2) | 0.147 (2) | 0.0708 (13) | 0.048 (5)* | |
H1D | 0.677 (2) | 0.262 (2) | 0.1625 (11) | 0.039 (4)* | |
N2A | 0.52121 (13) | 0.14129 (11) | 0.25613 (6) | 0.02653 (18) | |
H2A | 0.456 (2) | 0.0849 (19) | 0.2834 (11) | 0.035 (4)* | |
N3A | 0.62678 (12) | 0.28349 (10) | 0.30691 (6) | 0.02564 (18) | |
C1A | 0.51689 (14) | 0.08655 (12) | 0.16569 (7) | 0.02419 (19) | |
C2A | 0.62789 (14) | 0.32367 (12) | 0.39316 (7) | 0.0256 (2) | |
H2A1 | 0.5585 | 0.2567 | 0.4169 | 0.031* | |
C3A | 1.0228 (2) | 0.94995 (18) | 0.75830 (10) | 0.0495 (4) | |
H3A1 | 0.9063 | 0.9599 | 0.7607 | 0.074* | |
H3A2 | 1.1007 | 1.0417 | 0.8026 | 0.074* | |
H3A3 | 1.0400 | 0.8562 | 0.7729 | 0.074* | |
C11A | 0.73408 (13) | 0.47062 (12) | 0.45536 (7) | 0.02366 (19) | |
C12A | 0.85520 (14) | 0.56411 (12) | 0.42608 (7) | 0.0258 (2) | |
H12A | 0.8702 | 0.5312 | 0.3647 | 0.031* | |
C13A | 0.95270 (14) | 0.70357 (13) | 0.48588 (8) | 0.0280 (2) | |
H13A | 1.0343 | 0.7654 | 0.4652 | 0.034* | |
C14A | 0.93201 (13) | 0.75450 (12) | 0.57704 (8) | 0.0272 (2) | |
C15A | 0.81326 (15) | 0.66133 (14) | 0.60712 (8) | 0.0296 (2) | |
H15A | 0.7987 | 0.6939 | 0.6686 | 0.036* | |
C16A | 0.71637 (14) | 0.52038 (13) | 0.54644 (7) | 0.0282 (2) | |
H16A | 0.6369 | 0.4571 | 0.5674 | 0.034* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.02376 (12) | 0.02918 (13) | 0.02258 (12) | 0.00799 (9) | 0.00616 (9) | 0.00470 (9) |
S2 | 0.03053 (15) | 0.04077 (17) | 0.03995 (17) | 0.01490 (12) | 0.00683 (12) | 0.00491 (13) |
N1 | 0.0350 (5) | 0.0402 (5) | 0.0211 (4) | 0.0189 (4) | 0.0066 (4) | 0.0072 (4) |
N2 | 0.0260 (4) | 0.0306 (4) | 0.0204 (4) | 0.0103 (3) | 0.0052 (3) | 0.0053 (3) |
N3 | 0.0252 (4) | 0.0254 (4) | 0.0234 (4) | 0.0073 (3) | 0.0074 (3) | 0.0057 (3) |
C1 | 0.0248 (4) | 0.0222 (4) | 0.0213 (4) | 0.0040 (3) | 0.0064 (4) | 0.0057 (3) |
C2 | 0.0250 (5) | 0.0244 (4) | 0.0221 (4) | 0.0040 (4) | 0.0050 (4) | 0.0047 (4) |
C3 | 0.0463 (7) | 0.0324 (6) | 0.0421 (7) | 0.0164 (5) | 0.0146 (6) | 0.0073 (5) |
C11 | 0.0245 (4) | 0.0213 (4) | 0.0210 (4) | 0.0029 (3) | 0.0062 (3) | 0.0050 (3) |
C12 | 0.0265 (5) | 0.0263 (5) | 0.0216 (4) | 0.0025 (4) | 0.0050 (4) | 0.0019 (4) |
C13 | 0.0245 (5) | 0.0317 (5) | 0.0253 (5) | 0.0036 (4) | 0.0027 (4) | 0.0036 (4) |
C14 | 0.0242 (5) | 0.0255 (5) | 0.0280 (5) | 0.0046 (4) | 0.0077 (4) | 0.0066 (4) |
C15 | 0.0267 (5) | 0.0249 (5) | 0.0240 (5) | 0.0031 (4) | 0.0065 (4) | 0.0013 (4) |
C16 | 0.0236 (5) | 0.0252 (5) | 0.0217 (4) | 0.0027 (4) | 0.0038 (4) | 0.0030 (4) |
S1A | 0.03812 (15) | 0.02424 (13) | 0.01908 (12) | 0.00001 (10) | 0.00147 (10) | 0.00366 (9) |
S2A | 0.03119 (15) | 0.02522 (14) | 0.04128 (17) | 0.00205 (11) | −0.00131 (12) | −0.00120 (11) |
N1A | 0.0401 (5) | 0.0288 (5) | 0.0220 (4) | −0.0014 (4) | 0.0068 (4) | 0.0061 (4) |
N2A | 0.0329 (5) | 0.0224 (4) | 0.0194 (4) | −0.0003 (3) | 0.0039 (3) | 0.0033 (3) |
N3A | 0.0289 (4) | 0.0211 (4) | 0.0227 (4) | 0.0025 (3) | 0.0023 (3) | 0.0035 (3) |
C1A | 0.0282 (5) | 0.0235 (4) | 0.0201 (4) | 0.0062 (4) | 0.0033 (4) | 0.0061 (3) |
C2A | 0.0279 (5) | 0.0231 (4) | 0.0229 (5) | 0.0036 (4) | 0.0043 (4) | 0.0041 (4) |
C3A | 0.0577 (9) | 0.0387 (7) | 0.0343 (7) | 0.0024 (6) | −0.0097 (6) | −0.0026 (5) |
C11A | 0.0239 (4) | 0.0224 (4) | 0.0224 (4) | 0.0058 (3) | 0.0026 (4) | 0.0042 (3) |
C12A | 0.0273 (5) | 0.0259 (5) | 0.0241 (5) | 0.0073 (4) | 0.0050 (4) | 0.0070 (4) |
C13A | 0.0252 (5) | 0.0254 (5) | 0.0323 (5) | 0.0050 (4) | 0.0044 (4) | 0.0085 (4) |
C14A | 0.0232 (5) | 0.0227 (4) | 0.0301 (5) | 0.0063 (4) | −0.0008 (4) | 0.0018 (4) |
C15A | 0.0291 (5) | 0.0295 (5) | 0.0244 (5) | 0.0054 (4) | 0.0041 (4) | 0.0007 (4) |
C16A | 0.0274 (5) | 0.0281 (5) | 0.0244 (5) | 0.0026 (4) | 0.0052 (4) | 0.0032 (4) |
Geometric parameters (Å, º) top
S1—C1 | 1.7045 (11) | S1A—C1A | 1.7045 (11) |
S2—C14 | 1.7645 (11) | S2A—C14A | 1.7640 (11) |
S2—C3 | 1.7991 (14) | S2A—C3A | 1.7995 (17) |
N1—C1 | 1.3244 (14) | N1A—C1A | 1.3297 (14) |
N1—H1A | 0.873 (17) | N1A—H1C | 0.869 (19) |
N1—H1B | 0.875 (17) | N1A—H1D | 0.852 (17) |
N2—C1 | 1.3561 (13) | N2A—C1A | 1.3493 (13) |
N2—N3 | 1.3783 (12) | N2A—N3A | 1.3851 (12) |
N2—H2 | 0.854 (17) | N2A—H2A | 0.906 (17) |
N3—C2 | 1.2874 (13) | N3A—C2A | 1.2880 (14) |
C2—C11 | 1.4649 (15) | C2A—C11A | 1.4639 (14) |
C2—H2B | 0.9500 | C2A—H2A1 | 0.9500 |
C3—H3A | 0.9800 | C3A—H3A1 | 0.9800 |
C3—H3B | 0.9800 | C3A—H3A2 | 0.9800 |
C3—H3C | 0.9800 | C3A—H3A3 | 0.9800 |
C11—C16 | 1.3999 (14) | C11A—C16A | 1.3987 (15) |
C11—C12 | 1.4060 (15) | C11A—C12A | 1.4067 (15) |
C12—C13 | 1.3829 (16) | C12A—C13A | 1.3842 (15) |
C12—H12 | 0.9500 | C12A—H12A | 0.9500 |
C13—C14 | 1.4055 (15) | C13A—C14A | 1.4079 (16) |
C13—H13 | 0.9500 | C13A—H13A | 0.9500 |
C14—C15 | 1.3992 (15) | C14A—C15A | 1.4000 (17) |
C15—C16 | 1.3926 (15) | C15A—C16A | 1.3958 (15) |
C15—H15 | 0.9500 | C15A—H15A | 0.9500 |
C16—H16 | 0.9500 | C16A—H16A | 0.9500 |
| | | |
C14—S2—C3 | 103.46 (6) | C14A—S2A—C3A | 103.74 (7) |
C1—N1—H1A | 118.9 (11) | C1A—N1A—H1C | 120.3 (13) |
C1—N1—H1B | 118.9 (11) | C1A—N1A—H1D | 120.6 (11) |
H1A—N1—H1B | 117.9 (15) | H1C—N1A—H1D | 118.9 (17) |
C1—N2—N3 | 118.67 (9) | C1A—N2A—N3A | 119.41 (9) |
C1—N2—H2 | 120.0 (11) | C1A—N2A—H2A | 120.2 (10) |
N3—N2—H2 | 119.9 (11) | N3A—N2A—H2A | 120.4 (10) |
C2—N3—N2 | 116.18 (9) | C2A—N3A—N2A | 115.19 (9) |
N1—C1—N2 | 117.64 (10) | N1A—C1A—N2A | 117.52 (10) |
N1—C1—S1 | 123.74 (8) | N1A—C1A—S1A | 122.52 (8) |
N2—C1—S1 | 118.57 (8) | N2A—C1A—S1A | 119.96 (8) |
N3—C2—C11 | 119.66 (10) | N3A—C2A—C11A | 121.25 (10) |
N3—C2—H2B | 120.2 | N3A—C2A—H2A1 | 119.4 |
C11—C2—H2B | 120.2 | C11A—C2A—H2A1 | 119.4 |
S2—C3—H3A | 109.5 | S2A—C3A—H3A1 | 109.5 |
S2—C3—H3B | 109.5 | S2A—C3A—H3A2 | 109.5 |
H3A—C3—H3B | 109.5 | H3A1—C3A—H3A2 | 109.5 |
S2—C3—H3C | 109.5 | S2A—C3A—H3A3 | 109.5 |
H3A—C3—H3C | 109.5 | H3A1—C3A—H3A3 | 109.5 |
H3B—C3—H3C | 109.5 | H3A2—C3A—H3A3 | 109.5 |
C16—C11—C12 | 118.67 (10) | C16A—C11A—C12A | 118.58 (10) |
C16—C11—C2 | 119.91 (9) | C16A—C11A—C2A | 119.77 (10) |
C12—C11—C2 | 121.39 (9) | C12A—C11A—C2A | 121.65 (9) |
C13—C12—C11 | 120.38 (10) | C13A—C12A—C11A | 120.60 (10) |
C13—C12—H12 | 119.8 | C13A—C12A—H12A | 119.7 |
C11—C12—H12 | 119.8 | C11A—C12A—H12A | 119.7 |
C12—C13—C14 | 120.67 (10) | C12A—C13A—C14A | 120.55 (10) |
C12—C13—H13 | 119.7 | C12A—C13A—H13A | 119.7 |
C14—C13—H13 | 119.7 | C14A—C13A—H13A | 119.7 |
C15—C14—C13 | 119.32 (10) | C15A—C14A—C13A | 119.27 (10) |
C15—C14—S2 | 124.70 (8) | C15A—C14A—S2A | 124.71 (9) |
C13—C14—S2 | 115.97 (8) | C13A—C14A—S2A | 116.02 (9) |
C16—C15—C14 | 119.71 (10) | C16A—C15A—C14A | 119.74 (10) |
C16—C15—H15 | 120.1 | C16A—C15A—H15A | 120.1 |
C14—C15—H15 | 120.1 | C14A—C15A—H15A | 120.1 |
C15—C16—C11 | 121.17 (10) | C15A—C16A—C11A | 121.24 (10) |
C15—C16—H16 | 119.4 | C15A—C16A—H16A | 119.4 |
C11—C16—H16 | 119.4 | C11A—C16A—H16A | 119.4 |
| | | |
C1—N2—N3—C2 | −176.22 (10) | C1A—N2A—N3A—C2A | −177.30 (10) |
N3—N2—C1—N1 | 7.31 (15) | N3A—N2A—C1A—N1A | −1.10 (16) |
N3—N2—C1—S1 | −175.05 (8) | N3A—N2A—C1A—S1A | 179.07 (8) |
N2—N3—C2—C11 | −179.95 (9) | N2A—N3A—C2A—C11A | 179.70 (9) |
N3—C2—C11—C16 | −161.46 (10) | N3A—C2A—C11A—C16A | 171.71 (11) |
N3—C2—C11—C12 | 16.63 (16) | N3A—C2A—C11A—C12A | −8.53 (16) |
C16—C11—C12—C13 | 3.11 (16) | C16A—C11A—C12A—C13A | −1.04 (16) |
C2—C11—C12—C13 | −175.00 (10) | C2A—C11A—C12A—C13A | 179.19 (10) |
C11—C12—C13—C14 | −0.92 (17) | C11A—C12A—C13A—C14A | −0.17 (16) |
C12—C13—C14—C15 | −1.51 (17) | C12A—C13A—C14A—C15A | 0.96 (17) |
C12—C13—C14—S2 | −179.97 (9) | C12A—C13A—C14A—S2A | −179.10 (8) |
C3—S2—C14—C15 | 5.08 (12) | C3A—S2A—C14A—C15A | 7.41 (12) |
C3—S2—C14—C13 | −176.55 (9) | C3A—S2A—C14A—C13A | −172.52 (9) |
C13—C14—C15—C16 | 1.69 (17) | C13A—C14A—C15A—C16A | −0.52 (17) |
S2—C14—C15—C16 | −179.99 (9) | S2A—C14A—C15A—C16A | 179.55 (9) |
C14—C15—C16—C11 | 0.54 (17) | C14A—C15A—C16A—C11A | −0.72 (18) |
C12—C11—C16—C15 | −2.94 (16) | C12A—C11A—C16A—C15A | 1.50 (17) |
C2—C11—C16—C15 | 175.20 (10) | C2A—C11A—C16A—C15A | −178.74 (10) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···S1i | 0.873 (17) | 2.459 (17) | 3.3254 (11) | 172.1 (15) |
N1—H1B···N3 | 0.875 (17) | 2.266 (16) | 2.6364 (13) | 105.4 (12) |
N2—H2···S1Ai | 0.854 (17) | 2.555 (18) | 3.3412 (10) | 153.5 (15) |
N1A—H1C···S1Aii | 0.869 (19) | 2.604 (19) | 3.4707 (11) | 174.7 (17) |
N2A—H2A···S1i | 0.906 (17) | 2.454 (17) | 3.3499 (10) | 169.8 (14) |
N1A—H1D···N3A | 0.852 (17) | 2.302 (16) | 2.6440 (14) | 104.2 (13) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, −y, −z. |