Two polymorphs of the title compound, C
16H
16O
3, have been obtained from the same solution. One polymorph, (I
m), crystallizes in the monoclinic space group
P2
1, while the other, (I
o), crystallizes in the orthorhombic space group
P2
12
12
1. The cell constants of the two polymorphs are surprisingly similar. Whereas the
a and
b axes are equal in the two structures, the
c axis in (I
o) is twice as long as that in (I
m). The monoclinic angle
is 95.084 (9)° compared with 90° in the orthorhombic crystal system. The cell volume of (I
m) is almost exactly half of the cell volume of (I
o). The packing motifs are also very similar in the two structures. However, whereas the molecules in (I
m) are related by a twofold screw axis just in the direction of the
b axis, in (I
o) there are twofold screw axes along all three directions of the unit cell.
Supporting information
CCDC references: 681563; 681564
Full experimenatal details are published elsewhere (Rueping et al.,
2008).
Because of the absence of anomalous scatterers, Friedel pairs were merged prior
to refinement. All H atoms could be located by difference Fourier synthesis.
They were refined with fixed individual displacement parameters
[Uiso(H) = 1.2Ueq(C) or 1.5Ueq(Cmethyl)] using a
riding model, with C—H ranging from 0.95 to 1.00 Å.
For both compounds, data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 1991); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).
(Im) 4-propyl-3,4-dihydro-2
H-naphtho[1,2-
b]pyran-5,6-dione
top
Crystal data top
C16H16O3 | F(000) = 272 |
Mr = 256.29 | Dx = 1.314 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 3913 reflections |
a = 6.3201 (7) Å | θ = 2.2–25.5° |
b = 5.2972 (8) Å | µ = 0.09 mm−1 |
c = 19.429 (2) Å | T = 173 K |
β = 95.084 (9)° | Needle, orange |
V = 647.90 (14) Å3 | 0.22 × 0.04 × 0.04 mm |
Z = 2 | |
Data collection top
Stoe IPDSII two-circle diffractometer | 1021 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.099 |
Graphite monochromator | θmax = 25.5°, θmin = 2.1° |
ω scans | h = −7→7 |
6418 measured reflections | k = −6→6 |
1331 independent reflections | l = −23→23 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0396P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max < 0.001 |
1331 reflections | Δρmax = 0.16 e Å−3 |
173 parameters | Δρmin = −0.18 e Å−3 |
1 restraint | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.088 (9) |
Crystal data top
C16H16O3 | V = 647.90 (14) Å3 |
Mr = 256.29 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 6.3201 (7) Å | µ = 0.09 mm−1 |
b = 5.2972 (8) Å | T = 173 K |
c = 19.429 (2) Å | 0.22 × 0.04 × 0.04 mm |
β = 95.084 (9)° | |
Data collection top
Stoe IPDSII two-circle diffractometer | 1021 reflections with I > 2σ(I) |
6418 measured reflections | Rint = 0.099 |
1331 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.041 | 1 restraint |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 0.97 | Δρmax = 0.16 e Å−3 |
1331 reflections | Δρmin = −0.18 e Å−3 |
173 parameters | |
Special details top
Experimental. ; |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.0416 (4) | 0.6319 (5) | 0.10963 (12) | 0.0454 (7) | |
O2 | 0.0959 (3) | 0.9388 (4) | 0.21703 (12) | 0.0374 (6) | |
O3 | 0.7157 (3) | 0.4375 (4) | 0.25398 (11) | 0.0333 (6) | |
C1 | 0.1312 (5) | 0.5916 (6) | 0.14041 (16) | 0.0311 (7) | |
C2 | 0.2065 (5) | 0.7573 (6) | 0.20319 (16) | 0.0304 (7) | |
C3 | 0.4053 (5) | 0.6977 (6) | 0.24317 (15) | 0.0283 (7) | |
C4 | 0.5268 (5) | 0.5070 (6) | 0.22130 (15) | 0.0279 (7) | |
C5 | 0.4705 (5) | 0.3487 (6) | 0.15938 (15) | 0.0287 (7) | |
C6 | 0.2748 (5) | 0.3874 (6) | 0.12012 (15) | 0.0300 (7) | |
C7 | 0.2169 (5) | 0.2357 (6) | 0.06332 (16) | 0.0339 (8) | |
H7 | 0.0846 | 0.2620 | 0.0371 | 0.041* | |
C8 | 0.3508 (5) | 0.0469 (7) | 0.04473 (16) | 0.0365 (8) | |
H8 | 0.3113 | −0.0556 | 0.0056 | 0.044* | |
C9 | 0.5430 (5) | 0.0069 (6) | 0.08325 (16) | 0.0351 (8) | |
H9 | 0.6336 | −0.1251 | 0.0706 | 0.042* | |
C10 | 0.6052 (5) | 0.1574 (6) | 0.14025 (16) | 0.0328 (8) | |
H10 | 0.7383 | 0.1300 | 0.1659 | 0.039* | |
C11 | 0.7659 (5) | 0.5476 (7) | 0.32131 (16) | 0.0349 (7) | |
H11A | 0.9189 | 0.5233 | 0.3355 | 0.042* | |
H11B | 0.6842 | 0.4600 | 0.3553 | 0.042* | |
C12 | 0.7147 (5) | 0.8257 (6) | 0.32159 (17) | 0.0332 (7) | |
H12A | 0.7967 | 0.9142 | 0.2878 | 0.040* | |
H12B | 0.7564 | 0.8968 | 0.3679 | 0.040* | |
C13 | 0.4775 (5) | 0.8680 (6) | 0.30309 (15) | 0.0302 (7) | |
H13 | 0.4593 | 1.0460 | 0.2865 | 0.036* | |
C14 | 0.3442 (5) | 0.8371 (7) | 0.36480 (16) | 0.0331 (8) | |
H14A | 0.1937 | 0.8125 | 0.3473 | 0.040* | |
H14B | 0.3915 | 0.6832 | 0.3907 | 0.040* | |
C15 | 0.3591 (6) | 1.0598 (8) | 0.4138 (2) | 0.0500 (10) | |
H15A | 0.3187 | 1.2147 | 0.3873 | 0.060* | |
H15B | 0.5087 | 1.0792 | 0.4329 | 0.060* | |
C16 | 0.2199 (6) | 1.0378 (10) | 0.47349 (19) | 0.0561 (11) | |
H16A | 0.2389 | 1.1878 | 0.5029 | 0.084* | |
H16B | 0.2605 | 0.8869 | 0.5007 | 0.084* | |
H16C | 0.0707 | 1.0244 | 0.4553 | 0.084* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0328 (13) | 0.0524 (17) | 0.0488 (14) | 0.0098 (12) | −0.0087 (11) | −0.0051 (12) |
O2 | 0.0316 (12) | 0.0377 (13) | 0.0432 (14) | 0.0085 (12) | 0.0050 (10) | −0.0027 (12) |
O3 | 0.0296 (12) | 0.0356 (13) | 0.0331 (12) | 0.0034 (11) | −0.0066 (9) | −0.0002 (10) |
C1 | 0.0270 (17) | 0.0336 (18) | 0.0326 (17) | −0.0011 (14) | 0.0028 (14) | 0.0033 (15) |
C2 | 0.0291 (17) | 0.0310 (18) | 0.0317 (17) | 0.0007 (15) | 0.0068 (14) | 0.0014 (14) |
C3 | 0.0257 (16) | 0.0305 (18) | 0.0288 (17) | −0.0009 (14) | 0.0028 (13) | 0.0042 (14) |
C4 | 0.0226 (15) | 0.0303 (18) | 0.0304 (16) | −0.0021 (14) | 0.0010 (13) | 0.0055 (14) |
C5 | 0.0295 (16) | 0.0288 (16) | 0.0281 (15) | 0.0006 (14) | 0.0030 (13) | 0.0067 (15) |
C6 | 0.0301 (17) | 0.0296 (18) | 0.0300 (17) | 0.0010 (13) | 0.0008 (13) | 0.0044 (14) |
C7 | 0.0314 (18) | 0.037 (2) | 0.0322 (19) | −0.0024 (15) | −0.0026 (14) | 0.0018 (15) |
C8 | 0.044 (2) | 0.0370 (18) | 0.0280 (18) | −0.0014 (18) | 0.0024 (14) | −0.0015 (16) |
C9 | 0.0420 (19) | 0.0300 (19) | 0.0336 (18) | 0.0048 (14) | 0.0051 (14) | 0.0031 (14) |
C10 | 0.0330 (18) | 0.0331 (18) | 0.0326 (17) | 0.0035 (15) | 0.0044 (14) | 0.0063 (16) |
C11 | 0.0315 (17) | 0.0382 (18) | 0.0335 (17) | 0.0003 (15) | −0.0056 (13) | 0.0006 (16) |
C12 | 0.0288 (17) | 0.0347 (18) | 0.0362 (18) | −0.0054 (14) | 0.0033 (13) | −0.0032 (15) |
C13 | 0.0310 (18) | 0.0279 (17) | 0.0318 (17) | −0.0021 (13) | 0.0039 (13) | 0.0010 (15) |
C14 | 0.0329 (17) | 0.0338 (18) | 0.0325 (18) | −0.0059 (15) | 0.0021 (13) | −0.0003 (15) |
C15 | 0.053 (2) | 0.048 (2) | 0.051 (2) | −0.008 (2) | 0.0132 (18) | −0.019 (2) |
C16 | 0.057 (2) | 0.069 (3) | 0.044 (2) | −0.001 (2) | 0.0089 (18) | −0.016 (2) |
Geometric parameters (Å, º) top
O1—C1 | 1.217 (4) | C10—H10 | 0.9500 |
O2—C2 | 1.232 (4) | C11—C12 | 1.509 (5) |
O3—C4 | 1.353 (4) | C11—H11A | 0.9900 |
O3—C11 | 1.442 (4) | C11—H11B | 0.9900 |
C1—C6 | 1.487 (4) | C12—C13 | 1.527 (4) |
C1—C2 | 1.543 (5) | C12—H12A | 0.9900 |
C2—C3 | 1.452 (4) | C12—H12B | 0.9900 |
C3—C4 | 1.359 (4) | C13—C14 | 1.534 (4) |
C3—C13 | 1.511 (4) | C13—H13 | 1.0000 |
C4—C5 | 1.484 (4) | C14—C15 | 1.514 (5) |
C5—C10 | 1.395 (4) | C14—H14A | 0.9900 |
C5—C6 | 1.410 (4) | C14—H14B | 0.9900 |
C6—C7 | 1.388 (4) | C15—C16 | 1.521 (5) |
C7—C8 | 1.378 (5) | C15—H15A | 0.9900 |
C7—H7 | 0.9500 | C15—H15B | 0.9900 |
C8—C9 | 1.385 (5) | C16—H16A | 0.9800 |
C8—H8 | 0.9500 | C16—H16B | 0.9800 |
C9—C10 | 1.393 (5) | C16—H16C | 0.9800 |
C9—H9 | 0.9500 | | |
| | | |
C4—O3—C11 | 115.5 (2) | O3—C11—H11B | 109.3 |
O1—C1—C6 | 122.6 (3) | C12—C11—H11B | 109.3 |
O1—C1—C2 | 119.3 (3) | H11A—C11—H11B | 108.0 |
C6—C1—C2 | 118.1 (3) | C11—C12—C13 | 110.4 (3) |
O2—C2—C3 | 122.3 (3) | C11—C12—H12A | 109.6 |
O2—C2—C1 | 118.4 (3) | C13—C12—H12A | 109.6 |
C3—C2—C1 | 119.4 (3) | C11—C12—H12B | 109.6 |
C4—C3—C2 | 118.7 (3) | C13—C12—H12B | 109.6 |
C4—C3—C13 | 123.0 (3) | H12A—C12—H12B | 108.1 |
C2—C3—C13 | 118.0 (3) | C3—C13—C12 | 108.5 (3) |
O3—C4—C3 | 123.7 (3) | C3—C13—C14 | 112.9 (3) |
O3—C4—C5 | 111.4 (3) | C12—C13—C14 | 113.3 (3) |
C3—C4—C5 | 124.9 (3) | C3—C13—H13 | 107.3 |
C10—C5—C6 | 119.2 (3) | C12—C13—H13 | 107.3 |
C10—C5—C4 | 121.2 (3) | C14—C13—H13 | 107.3 |
C6—C5—C4 | 119.5 (3) | C15—C14—C13 | 113.6 (3) |
C7—C6—C5 | 120.2 (3) | C15—C14—H14A | 108.8 |
C7—C6—C1 | 120.5 (3) | C13—C14—H14A | 108.8 |
C5—C6—C1 | 119.3 (3) | C15—C14—H14B | 108.8 |
C8—C7—C6 | 120.3 (3) | C13—C14—H14B | 108.8 |
C8—C7—H7 | 119.9 | H14A—C14—H14B | 107.7 |
C6—C7—H7 | 119.9 | C14—C15—C16 | 114.3 (3) |
C7—C8—C9 | 119.9 (3) | C14—C15—H15A | 108.7 |
C7—C8—H8 | 120.0 | C16—C15—H15A | 108.7 |
C9—C8—H8 | 120.0 | C14—C15—H15B | 108.7 |
C8—C9—C10 | 120.9 (3) | C16—C15—H15B | 108.7 |
C8—C9—H9 | 119.5 | H15A—C15—H15B | 107.6 |
C10—C9—H9 | 119.5 | C15—C16—H16A | 109.5 |
C9—C10—C5 | 119.5 (3) | C15—C16—H16B | 109.5 |
C9—C10—H10 | 120.3 | H16A—C16—H16B | 109.5 |
C5—C10—H10 | 120.3 | C15—C16—H16C | 109.5 |
O3—C11—C12 | 111.6 (3) | H16A—C16—H16C | 109.5 |
O3—C11—H11A | 109.3 | H16B—C16—H16C | 109.5 |
C12—C11—H11A | 109.3 | | |
| | | |
O1—C1—C2—O2 | −5.6 (4) | O1—C1—C6—C7 | 1.3 (5) |
C6—C1—C2—O2 | 174.5 (3) | C2—C1—C6—C7 | −178.8 (3) |
O1—C1—C2—C3 | 175.4 (3) | O1—C1—C6—C5 | −178.5 (3) |
C6—C1—C2—C3 | −4.5 (4) | C2—C1—C6—C5 | 1.4 (4) |
O2—C2—C3—C4 | −174.7 (3) | C5—C6—C7—C8 | −0.3 (4) |
C1—C2—C3—C4 | 4.3 (4) | C1—C6—C7—C8 | 179.9 (3) |
O2—C2—C3—C13 | −0.7 (4) | C6—C7—C8—C9 | 0.6 (5) |
C1—C2—C3—C13 | 178.3 (3) | C7—C8—C9—C10 | −0.9 (5) |
C11—O3—C4—C3 | 10.8 (4) | C8—C9—C10—C5 | 1.0 (5) |
C11—O3—C4—C5 | −169.0 (3) | C6—C5—C10—C9 | −0.6 (4) |
C2—C3—C4—O3 | 179.2 (3) | C4—C5—C10—C9 | 177.6 (3) |
C13—C3—C4—O3 | 5.5 (5) | C4—O3—C11—C12 | −44.0 (4) |
C2—C3—C4—C5 | −1.1 (4) | O3—C11—C12—C13 | 61.5 (3) |
C13—C3—C4—C5 | −174.7 (3) | C4—C3—C13—C12 | 12.2 (4) |
O3—C4—C5—C10 | −0.6 (4) | C2—C3—C13—C12 | −161.5 (3) |
C3—C4—C5—C10 | 179.6 (3) | C4—C3—C13—C14 | −114.3 (3) |
O3—C4—C5—C6 | 177.6 (3) | C2—C3—C13—C14 | 72.0 (4) |
C3—C4—C5—C6 | −2.2 (4) | C11—C12—C13—C3 | −43.4 (3) |
C10—C5—C6—C7 | 0.3 (4) | C11—C12—C13—C14 | 82.9 (3) |
C4—C5—C6—C7 | −178.0 (3) | C3—C13—C14—C15 | −159.7 (3) |
C10—C5—C6—C1 | −179.9 (3) | C12—C13—C14—C15 | 76.4 (4) |
C4—C5—C6—C1 | 1.8 (4) | C13—C14—C15—C16 | 177.3 (3) |
(Io) 4-propyl-3,4,5,6-tetrahydro-2
H-naphtho[1,2-
b]pyran-5,6-dione
top
Crystal data top
C16H16O3 | F(000) = 544 |
Mr = 256.29 | Dx = 1.319 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 3430 reflections |
a = 5.2833 (7) Å | θ = 2.2–24.1° |
b = 6.3043 (8) Å | µ = 0.09 mm−1 |
c = 38.753 (6) Å | T = 173 K |
V = 1290.8 (3) Å3 | Plate, orange |
Z = 4 | 0.19 × 0.18 × 0.03 mm |
Data collection top
Stoe IPDSII two-circle diffractometer | 738 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.083 |
Graphite monochromator | θmax = 24.8°, θmin = 2.1° |
ω scans | h = −5→6 |
8057 measured reflections | k = −7→7 |
1399 independent reflections | l = −45→45 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 0.84 | w = 1/[σ2(Fo2) + (0.056P)2] where P = (Fo2 + 2Fc2)/3 |
1399 reflections | (Δ/σ)max < 0.001 |
172 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
Crystal data top
C16H16O3 | V = 1290.8 (3) Å3 |
Mr = 256.29 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.2833 (7) Å | µ = 0.09 mm−1 |
b = 6.3043 (8) Å | T = 173 K |
c = 38.753 (6) Å | 0.19 × 0.18 × 0.03 mm |
Data collection top
Stoe IPDSII two-circle diffractometer | 738 reflections with I > 2σ(I) |
8057 measured reflections | Rint = 0.083 |
1399 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 0.84 | Δρmax = 0.24 e Å−3 |
1399 reflections | Δρmin = −0.17 e Å−3 |
172 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.3409 (6) | 0.1794 (5) | 0.94506 (7) | 0.0721 (9) | |
O2 | 0.6456 (6) | 0.2881 (4) | 0.89158 (7) | 0.0642 (8) | |
O3 | 0.1459 (5) | 0.8989 (4) | 0.87354 (7) | 0.0586 (7) | |
C1 | 0.2976 (8) | 0.3442 (7) | 0.92982 (11) | 0.0575 (9) | |
C2 | 0.4634 (8) | 0.4026 (6) | 0.89841 (10) | 0.0545 (9) | |
C3 | 0.4033 (7) | 0.5906 (6) | 0.87893 (10) | 0.0526 (9) | |
C4 | 0.2114 (8) | 0.7162 (6) | 0.88969 (10) | 0.0539 (9) | |
C5 | 0.0566 (8) | 0.6794 (6) | 0.92057 (10) | 0.0511 (9) | |
C6 | 0.0949 (7) | 0.4923 (6) | 0.93991 (9) | 0.0513 (9) | |
C7 | −0.0561 (8) | 0.4499 (6) | 0.96839 (10) | 0.0586 (11) | |
H7 | −0.0272 | 0.3257 | 0.9817 | 0.070* | |
C8 | −0.2491 (8) | 0.5881 (8) | 0.97754 (10) | 0.0622 (11) | |
H8 | −0.3548 | 0.5571 | 0.9967 | 0.075* | |
C9 | −0.2870 (8) | 0.7728 (7) | 0.95843 (10) | 0.0587 (10) | |
H9 | −0.4170 | 0.8689 | 0.9649 | 0.070* | |
C10 | −0.1373 (8) | 0.8170 (7) | 0.93017 (10) | 0.0584 (10) | |
H10 | −0.1666 | 0.9422 | 0.9172 | 0.070* | |
C11 | 0.2515 (9) | 0.9309 (7) | 0.83961 (10) | 0.0597 (11) | |
H11A | 0.2251 | 1.0800 | 0.8324 | 0.072* | |
H11B | 0.1639 | 0.8380 | 0.8228 | 0.072* | |
C12 | 0.5325 (7) | 0.8810 (7) | 0.83959 (12) | 0.0574 (10) | |
H12A | 0.6202 | 0.9718 | 0.8567 | 0.069* | |
H12B | 0.6046 | 0.9109 | 0.8165 | 0.069* | |
C13 | 0.5732 (8) | 0.6480 (7) | 0.84866 (9) | 0.0553 (10) | |
H13 | 0.7520 | 0.6339 | 0.8568 | 0.066* | |
C14 | 0.5431 (8) | 0.4985 (7) | 0.81767 (10) | 0.0583 (10) | |
H14A | 0.5160 | 0.3524 | 0.8263 | 0.070* | |
H14B | 0.3905 | 0.5405 | 0.8045 | 0.070* | |
C15 | 0.7692 (9) | 0.4988 (8) | 0.79350 (12) | 0.0768 (12) | |
H15A | 0.7947 | 0.6447 | 0.7847 | 0.092* | |
H15B | 0.9220 | 0.4590 | 0.8068 | 0.092* | |
C16 | 0.7438 (11) | 0.3498 (9) | 0.76303 (12) | 0.0885 (16) | |
H16A | 0.8948 | 0.3608 | 0.7485 | 0.133* | |
H16B | 0.5938 | 0.3883 | 0.7495 | 0.133* | |
H16C | 0.7264 | 0.2038 | 0.7714 | 0.133* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.067 (2) | 0.060 (2) | 0.0894 (19) | 0.0047 (17) | 0.0040 (16) | 0.0114 (16) |
O2 | 0.0528 (17) | 0.0569 (16) | 0.0830 (18) | 0.0107 (15) | −0.0020 (14) | −0.0022 (15) |
O3 | 0.0531 (17) | 0.0498 (16) | 0.0730 (16) | 0.0048 (14) | 0.0008 (13) | 0.0066 (14) |
C1 | 0.056 (2) | 0.044 (2) | 0.072 (2) | 0.000 (2) | −0.007 (2) | 0.0021 (18) |
C2 | 0.050 (2) | 0.044 (2) | 0.069 (2) | −0.001 (2) | −0.0087 (19) | −0.004 (2) |
C3 | 0.044 (2) | 0.046 (2) | 0.067 (2) | 0.0007 (17) | −0.0033 (18) | −0.0032 (18) |
C4 | 0.053 (2) | 0.0410 (19) | 0.068 (2) | −0.0023 (19) | −0.0071 (18) | 0.0005 (17) |
C5 | 0.047 (2) | 0.046 (2) | 0.061 (2) | −0.001 (2) | −0.0093 (17) | 0.0009 (17) |
C6 | 0.042 (2) | 0.047 (2) | 0.065 (2) | 0.0017 (17) | −0.0033 (19) | 0.0026 (19) |
C7 | 0.067 (3) | 0.051 (3) | 0.0573 (18) | 0.003 (2) | −0.009 (2) | 0.0070 (17) |
C8 | 0.050 (2) | 0.064 (3) | 0.072 (2) | −0.005 (2) | −0.001 (2) | −0.0028 (18) |
C9 | 0.050 (2) | 0.062 (2) | 0.063 (2) | 0.009 (2) | −0.0041 (19) | −0.0051 (19) |
C10 | 0.053 (2) | 0.056 (3) | 0.066 (2) | 0.000 (2) | −0.003 (2) | −0.0003 (19) |
C11 | 0.069 (3) | 0.051 (3) | 0.059 (2) | 0.004 (2) | −0.002 (2) | 0.0085 (16) |
C12 | 0.0428 (16) | 0.047 (2) | 0.082 (2) | −0.008 (2) | 0.002 (2) | 0.003 (2) |
C13 | 0.041 (2) | 0.059 (3) | 0.066 (2) | 0.003 (2) | −0.0011 (16) | −0.0038 (19) |
C14 | 0.050 (2) | 0.060 (3) | 0.065 (2) | −0.002 (2) | 0.000 (2) | 0.001 (2) |
C15 | 0.066 (3) | 0.080 (3) | 0.084 (3) | −0.001 (3) | 0.006 (3) | −0.008 (3) |
C16 | 0.085 (4) | 0.091 (4) | 0.090 (3) | 0.001 (3) | 0.016 (3) | −0.019 (3) |
Geometric parameters (Å, º) top
O1—C1 | 1.217 (5) | C10—H10 | 0.9500 |
O2—C2 | 1.232 (5) | C11—C12 | 1.518 (6) |
O3—C4 | 1.356 (4) | C11—H11A | 0.9900 |
O3—C11 | 1.443 (5) | C11—H11B | 0.9900 |
C1—C6 | 1.473 (5) | C12—C13 | 1.525 (6) |
C1—C2 | 1.544 (6) | C12—H12A | 0.9900 |
C2—C3 | 1.441 (5) | C12—H12B | 0.9900 |
C3—C4 | 1.352 (5) | C13—C14 | 1.535 (5) |
C3—C13 | 1.521 (5) | C13—H13 | 1.0000 |
C4—C5 | 1.467 (5) | C14—C15 | 1.518 (6) |
C5—C10 | 1.393 (5) | C14—H14A | 0.9900 |
C5—C6 | 1.412 (5) | C14—H14B | 0.9900 |
C6—C7 | 1.388 (5) | C15—C16 | 1.515 (6) |
C7—C8 | 1.387 (6) | C15—H15A | 0.9900 |
C7—H7 | 0.9500 | C15—H15B | 0.9900 |
C8—C9 | 1.394 (6) | C16—H16A | 0.9800 |
C8—H8 | 0.9500 | C16—H16B | 0.9800 |
C9—C10 | 1.380 (5) | C16—H16C | 0.9800 |
C9—H9 | 0.9500 | | |
| | | |
C4—O3—C11 | 116.2 (3) | O3—C11—H11B | 109.6 |
O1—C1—C6 | 123.3 (4) | C12—C11—H11B | 109.6 |
O1—C1—C2 | 118.6 (4) | H11A—C11—H11B | 108.1 |
C6—C1—C2 | 118.0 (3) | C11—C12—C13 | 109.7 (4) |
O2—C2—C3 | 122.8 (4) | C11—C12—H12A | 109.7 |
O2—C2—C1 | 118.2 (4) | C13—C12—H12A | 109.7 |
C3—C2—C1 | 119.0 (4) | C11—C12—H12B | 109.7 |
C4—C3—C2 | 119.0 (4) | C13—C12—H12B | 109.7 |
C4—C3—C13 | 122.8 (4) | H12A—C12—H12B | 108.2 |
C2—C3—C13 | 118.0 (4) | C3—C13—C12 | 108.9 (3) |
O3—C4—C3 | 123.1 (4) | C3—C13—C14 | 113.4 (3) |
O3—C4—C5 | 111.6 (4) | C12—C13—C14 | 113.3 (3) |
C3—C4—C5 | 125.2 (4) | C3—C13—H13 | 107.0 |
C10—C5—C6 | 118.9 (4) | C12—C13—H13 | 107.0 |
C10—C5—C4 | 122.0 (3) | C14—C13—H13 | 107.0 |
C6—C5—C4 | 119.0 (4) | C15—C14—C13 | 113.6 (4) |
C7—C6—C5 | 120.0 (4) | C15—C14—H14A | 108.8 |
C7—C6—C1 | 120.4 (4) | C13—C14—H14A | 108.8 |
C5—C6—C1 | 119.5 (4) | C15—C14—H14B | 108.8 |
C8—C7—C6 | 120.3 (4) | C13—C14—H14B | 108.8 |
C8—C7—H7 | 119.8 | H14A—C14—H14B | 107.7 |
C6—C7—H7 | 119.8 | C16—C15—C14 | 114.2 (4) |
C7—C8—C9 | 119.6 (4) | C16—C15—H15A | 108.7 |
C7—C8—H8 | 120.2 | C14—C15—H15A | 108.7 |
C9—C8—H8 | 120.2 | C16—C15—H15B | 108.7 |
C10—C9—C8 | 120.5 (4) | C14—C15—H15B | 108.7 |
C10—C9—H9 | 119.7 | H15A—C15—H15B | 107.6 |
C8—C9—H9 | 119.7 | C15—C16—H16A | 109.5 |
C9—C10—C5 | 120.6 (4) | C15—C16—H16B | 109.5 |
C9—C10—H10 | 119.7 | H16A—C16—H16B | 109.5 |
C5—C10—H10 | 119.7 | C15—C16—H16C | 109.5 |
O3—C11—C12 | 110.5 (4) | H16A—C16—H16C | 109.5 |
O3—C11—H11A | 109.6 | H16B—C16—H16C | 109.5 |
C12—C11—H11A | 109.6 | | |
| | | |
O1—C1—C2—O2 | −5.5 (6) | O1—C1—C6—C7 | 1.1 (6) |
C6—C1—C2—O2 | 174.3 (4) | C2—C1—C6—C7 | −178.6 (3) |
O1—C1—C2—C3 | 176.1 (4) | O1—C1—C6—C5 | −179.5 (4) |
C6—C1—C2—C3 | −4.1 (5) | C2—C1—C6—C5 | 0.8 (5) |
O2—C2—C3—C4 | −175.1 (4) | C5—C6—C7—C8 | 1.5 (6) |
C1—C2—C3—C4 | 3.2 (5) | C1—C6—C7—C8 | −179.1 (4) |
O2—C2—C3—C13 | 0.2 (6) | C6—C7—C8—C9 | −1.5 (6) |
C1—C2—C3—C13 | 178.5 (3) | C7—C8—C9—C10 | 1.2 (6) |
C11—O3—C4—C3 | 13.8 (5) | C8—C9—C10—C5 | −0.9 (6) |
C11—O3—C4—C5 | −168.7 (3) | C6—C5—C10—C9 | 1.0 (6) |
C2—C3—C4—O3 | 178.2 (3) | C4—C5—C10—C9 | 177.0 (4) |
C13—C3—C4—O3 | 3.2 (6) | C4—O3—C11—C12 | −46.4 (5) |
C2—C3—C4—C5 | 1.0 (6) | O3—C11—C12—C13 | 62.4 (5) |
C13—C3—C4—C5 | −174.0 (4) | C4—C3—C13—C12 | 13.6 (5) |
O3—C4—C5—C10 | 2.1 (5) | C2—C3—C13—C12 | −161.5 (3) |
C3—C4—C5—C10 | 179.5 (4) | C4—C3—C13—C14 | −113.5 (4) |
O3—C4—C5—C6 | 178.1 (3) | C2—C3—C13—C14 | 71.4 (4) |
C3—C4—C5—C6 | −4.5 (6) | C11—C12—C13—C3 | −44.3 (5) |
C10—C5—C6—C7 | −1.2 (5) | C11—C12—C13—C14 | 82.9 (5) |
C4—C5—C6—C7 | −177.4 (4) | C3—C13—C14—C15 | −158.4 (4) |
C10—C5—C6—C1 | 179.3 (3) | C12—C13—C14—C15 | 76.9 (5) |
C4—C5—C6—C1 | 3.2 (5) | C13—C14—C15—C16 | 179.2 (4) |
Experimental details
| (Im) | (Io) |
Crystal data |
Chemical formula | C16H16O3 | C16H16O3 |
Mr | 256.29 | 256.29 |
Crystal system, space group | Monoclinic, P21 | Orthorhombic, P212121 |
Temperature (K) | 173 | 173 |
a, b, c (Å) | 6.3201 (7), 5.2972 (8), 19.429 (2) | 5.2833 (7), 6.3043 (8), 38.753 (6) |
α, β, γ (°) | 90, 95.084 (9), 90 | 90, 90, 90 |
V (Å3) | 647.90 (14) | 1290.8 (3) |
Z | 2 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.09 | 0.09 |
Crystal size (mm) | 0.22 × 0.04 × 0.04 | 0.19 × 0.18 × 0.03 |
|
Data collection |
Diffractometer | Stoe IPDSII two-circle diffractometer | Stoe IPDSII two-circle diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6418, 1331, 1021 | 8057, 1399, 738 |
Rint | 0.099 | 0.083 |
(sin θ/λ)max (Å−1) | 0.605 | 0.589 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.087, 0.97 | 0.046, 0.108, 0.84 |
No. of reflections | 1331 | 1399 |
No. of parameters | 173 | 172 |
No. of restraints | 1 | 0 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.16, −0.18 | 0.24, −0.17 |
Selected torsion angles (º) for (Im) topC11—O3—C4—C3 | 10.8 (4) | C4—C3—C13—C12 | 12.2 (4) |
C13—C3—C4—O3 | 5.5 (5) | C11—C12—C13—C3 | −43.4 (3) |
C4—O3—C11—C12 | −44.0 (4) | C13—C14—C15—C16 | 177.3 (3) |
O3—C11—C12—C13 | 61.5 (3) | | |
Selected torsion angles (º) for (Io) topC11—O3—C4—C3 | 13.8 (5) | C4—C3—C13—C12 | 13.6 (5) |
C13—C3—C4—O3 | 3.2 (6) | C11—C12—C13—C3 | −44.3 (5) |
C4—O3—C11—C12 | −46.4 (5) | C13—C14—C15—C16 | 179.2 (4) |
O3—C11—C12—C13 | 62.4 (5) | | |
β-Lapachone is a naturally occurring plant quinone primarily isolated from the Central and South American lapacho tree (Tabebuia avellanedae). Lapachone (2,2-dimethyl-3,4-dihydro-2H-naphtho[1,2-b]pyran-5,6-dione) and its derivatives exhibit a number of important pharmacological properties, such as antibacterial, antifungal, antitrypanosomal, antimalarial and antitumor activities (Guiraud et al., 1994; de Andrade-Neto et al., 2004; Ferreira et al., 2006). The title compound, (I), was synthesized from 2-hydroxy-1,4-naphthoquinone, α,β-unsaturated aldehyde and diarylprolinol catalyst, and recrystallized from CH3OH/hexane/CH2Cl2 (Rueping et al., 2008). In the same reaction vessel, two different kinds of crystals were found, viz. yellow plates and yellow needles [both orange according to CIF]. Since the cell parameters of the two crystal types were different, for both types a full crystal structure determination was carried out. As a result, two polymorphs were encountered. The plates are an orthorhombic form, (Io), whereas the needles are a monoclinic form, (Im).
A perspective view of the two polymorphs of the title compound is shown in Figs. 1 and 2. Bond lengths and angles can be regarded as normal (Cambridge Structural Database; Version 5.28 of November 2006 plus two updates; Mogul; Version 1.1; Allen, 2002; Bruno et al., 2004). The 1,2-naphthoquinone unit is planar [the r.m.s. deviation for the ten C atoms is 0.014 and 0.016 Å for (Im) and (Io), respectively]. The 3,4,5,6-dihydro-2H-pyran ring adopts a half-chair conformation and exhibits local twofold rotational symmetry (Tables 2 and 3). The propyl chains adopt a trans conformation (Tables 2 and 3). The molecular conformation of both polymorphs is almost identical. A least-squares fit of all non-H atoms gives an r.m.s. deviation of 0.013 Å.
The packing patterns on the other hand show some interesting similarities and differences. Whereas the a and b axes are equal in both structures, the c axis in (Io) is twice as long as in (Im) and the monoclinic angle β of 95.084 (9) differs significantly from that of 90° in the orthorhombic crystal system. The cell volume of (Im) is almost exactly half of the cell volume of (Io). The packing motifs are also very similar in the two structures (Figs. 3 and 4). If only the central two columns of molecules in the packing of (Io) are compared with only the right or left two columns in the packing of (Im) the patterns seem to be the same, because the aromatic rings in two neighbouring molecules approach one another in the same manner. The reason for this similarity is that these molecules are related by a twofold screw axis running in the same direction in both structures, i.e. along b in (Im) and along a in (Io). However, the propyl chains of two neighbouring molecules approach each other in a completely different way. Whereas in (Im) two molecules are again related by a twofold screw axis along b (in the plane of the paper), in (Io) two molecules are related by a twofold screw axis along b (perpendicular to the plane of the paper). In other words, the propyl chains in (Im) all point in the same direction (downwards in Fig. 3) whereas the propyl chains in (Io) point upwards and downwards (Fig. 4). This difference is the reason for the appearance of two polymorphic forms of the title compound.