Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S010827010802057X/sk3252sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S010827010802057X/sk3252Isup2.hkl |
CCDC reference: 700024
The synthesis of (I) has been described elsewhere (Jagadish et al., 2003). Crystallization was effected by heating a suspension of the compound in methanol until dissolution was complete. The hot methanolic solution was allowed to cool slowly in an oil bath overnight.
H atoms were initially located in a difference Fourier map. N-bound H atoms were refined freely. C-bound H atoms were refined using a riding model, with Uiso(H) = 1.5Ueq for methyl H atoms and Uiso(H) = 1.2Ueq(H) for all others. C—H distances were constrained to 0.95 Å for aryl H atoms, 0.98 Å for methyl H atoms and 0.99 Å for methylene H atoms. The unit cell contains two solvent-accessible voids of 279 Å3 each. A difference map revealed a series of electron-density peaks corresponding to partially desolvated methanol disordered over many positions. No multi-part disorder model could be refined satsfactorily and so the residual electron density was removed using the SQUEEZE routine of PLATON (Spek, 2003). Friedel pairs were merged during refinement.
Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Version 2.0; Macrae et al., 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), publCIF (Westrip, 2008) and local programs.
C24H22N4O5·CH4O | Dx = 1.233 Mg m−3 |
Mr = 478.50 | Melting point: 230 K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 4713 reflections |
a = 9.6409 (7) Å | θ = 2.3–25.1° |
b = 10.4629 (8) Å | µ = 0.09 mm−1 |
c = 25.5588 (19) Å | T = 170 K |
V = 2578.2 (3) Å3 | Block, colourless |
Z = 4 | 0.44 × 0.19 × 0.10 mm |
F(000) = 1008 |
Bruker SMART 1000 CCD diffractometer | 2821 independent reflections |
Radiation source: sealed tube | 2290 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.053 |
thin–slice ω scans | θmax = 26.3°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −11→11 |
Tmin = 0.962, Tmax = 0.992 | k = −12→13 |
20487 measured reflections | l = −29→30 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.98 | w = 1/[σ2(Fo2) + (0.0341P)2] where P = (Fo2 + 2Fc2)/3 |
2821 reflections | (Δ/σ)max < 0.001 |
317 parameters | Δρmax = 0.12 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C24H22N4O5·CH4O | V = 2578.2 (3) Å3 |
Mr = 478.50 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.6409 (7) Å | µ = 0.09 mm−1 |
b = 10.4629 (8) Å | T = 170 K |
c = 25.5588 (19) Å | 0.44 × 0.19 × 0.10 mm |
Bruker SMART 1000 CCD diffractometer | 2821 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2290 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.992 | Rint = 0.053 |
20487 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 0 restraints |
wR(F2) = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.98 | Δρmax = 0.12 e Å−3 |
2821 reflections | Δρmin = −0.16 e Å−3 |
317 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.89973 (14) | −0.11162 (12) | 0.22062 (5) | 0.0309 (3) | |
O2 | 0.97357 (15) | 0.34853 (12) | 0.13658 (5) | 0.0359 (4) | |
O3 | 0.53507 (14) | 0.26430 (15) | 0.31939 (6) | 0.0482 (4) | |
O4 | 1.13837 (14) | 0.30198 (13) | 0.41850 (5) | 0.0367 (4) | |
O5 | 0.46687 (14) | 0.12011 (15) | 0.05317 (6) | 0.0465 (4) | |
N1 | 0.88631 (16) | 0.01722 (15) | 0.15032 (6) | 0.0252 (4) | |
N2 | 0.94574 (17) | 0.22640 (15) | 0.20877 (6) | 0.0274 (4) | |
N3 | 1.1482 (2) | 0.09850 (17) | 0.38956 (7) | 0.0325 (4) | |
N4 | 1.0860 (2) | 0.0011 (2) | −0.05770 (8) | 0.0631 (6) | |
C1 | 0.89550 (18) | −0.00246 (18) | 0.20159 (7) | 0.0242 (4) | |
C2 | 0.89295 (19) | 0.11447 (17) | 0.23639 (7) | 0.0245 (4) | |
C3 | 0.9373 (2) | 0.24793 (18) | 0.15746 (7) | 0.0262 (4) | |
C4 | 0.87583 (19) | 0.14115 (17) | 0.12414 (7) | 0.0244 (4) | |
C5 | 0.7415 (2) | 0.1374 (2) | 0.25591 (7) | 0.0312 (5) | |
H5A | 0.6921 | 0.1985 | 0.2329 | 0.037* | |
H5B | 0.6887 | 0.0564 | 0.2573 | 0.037* | |
C6 | 0.76166 (19) | 0.19199 (18) | 0.30973 (7) | 0.0272 (5) | |
C7 | 0.6648 (2) | 0.2544 (2) | 0.34026 (8) | 0.0362 (5) | |
C8 | 0.7045 (2) | 0.3022 (2) | 0.38899 (9) | 0.0403 (6) | |
H8 | 0.6390 | 0.3446 | 0.4107 | 0.048* | |
C9 | 0.8407 (2) | 0.28719 (19) | 0.40548 (8) | 0.0352 (5) | |
H9 | 0.8681 | 0.3230 | 0.4380 | 0.042* | |
C10 | 0.9382 (2) | 0.22141 (18) | 0.37589 (7) | 0.0270 (4) | |
C11 | 0.89601 (19) | 0.17274 (17) | 0.32731 (7) | 0.0246 (4) | |
C12 | 0.97792 (19) | 0.09878 (18) | 0.28693 (7) | 0.0260 (4) | |
H12A | 0.9857 | 0.0076 | 0.2968 | 0.031* | |
H12B | 1.0722 | 0.1348 | 0.2828 | 0.031* | |
C13 | 0.4300 (2) | 0.3253 (3) | 0.34984 (11) | 0.0683 (8) | |
H13A | 0.4188 | 0.2797 | 0.3831 | 0.102* | |
H13B | 0.3421 | 0.3240 | 0.3306 | 0.102* | |
H13C | 0.4570 | 0.4140 | 0.3568 | 0.102* | |
C14 | 1.0822 (2) | 0.21062 (18) | 0.39654 (7) | 0.0286 (5) | |
C15 | 0.7229 (2) | 0.17237 (19) | 0.10969 (8) | 0.0296 (5) | |
H15A | 0.6576 | 0.1311 | 0.1343 | 0.036* | |
H15B | 0.7063 | 0.2657 | 0.1097 | 0.036* | |
C16 | 0.70837 (19) | 0.11786 (19) | 0.05570 (7) | 0.0271 (4) | |
C17 | 0.5870 (2) | 0.09455 (19) | 0.02774 (8) | 0.0325 (5) | |
C18 | 0.5966 (2) | 0.0473 (2) | −0.02330 (8) | 0.0405 (6) | |
H18 | 0.5147 | 0.0306 | −0.0428 | 0.049* | |
C19 | 0.7250 (2) | 0.0252 (2) | −0.04525 (9) | 0.0419 (6) | |
H19 | 0.7304 | −0.0062 | −0.0801 | 0.050* | |
C20 | 0.8455 (2) | 0.0474 (2) | −0.01787 (8) | 0.0330 (5) | |
C21 | 0.8355 (2) | 0.09439 (18) | 0.03381 (7) | 0.0269 (4) | |
C22 | 0.95004 (19) | 0.12899 (18) | 0.07056 (7) | 0.0261 (4) | |
H22A | 0.9939 | 0.2108 | 0.0603 | 0.031* | |
H22B | 1.0218 | 0.0614 | 0.0715 | 0.031* | |
C23 | 0.3392 (2) | 0.0933 (3) | 0.02583 (10) | 0.0592 (7) | |
H23A | 0.3349 | 0.1447 | −0.0062 | 0.089* | |
H23B | 0.2603 | 0.1146 | 0.0484 | 0.089* | |
H23C | 0.3356 | 0.0024 | 0.0167 | 0.089* | |
C24 | 0.9809 (3) | 0.0211 (2) | −0.04037 (9) | 0.0426 (6) | |
H2N | 0.991 (2) | 0.290 (2) | 0.2276 (8) | 0.043 (6)* | |
H1N | 0.886 (2) | −0.054 (2) | 0.1278 (7) | 0.037 (6)* | |
H3A | 1.101 (2) | 0.029 (2) | 0.3778 (8) | 0.042 (7)* | |
H3B | 1.238 (3) | 0.093 (2) | 0.4035 (9) | 0.059 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0419 (8) | 0.0209 (8) | 0.0298 (8) | 0.0012 (6) | −0.0042 (6) | 0.0034 (6) |
O2 | 0.0574 (9) | 0.0211 (8) | 0.0291 (8) | −0.0059 (7) | −0.0012 (7) | 0.0012 (6) |
O3 | 0.0301 (8) | 0.0599 (11) | 0.0545 (10) | 0.0128 (7) | 0.0018 (7) | −0.0150 (8) |
O4 | 0.0486 (9) | 0.0272 (8) | 0.0342 (8) | −0.0058 (7) | −0.0111 (7) | −0.0022 (7) |
O5 | 0.0265 (8) | 0.0573 (11) | 0.0556 (10) | −0.0009 (8) | −0.0053 (7) | 0.0041 (9) |
N1 | 0.0343 (10) | 0.0191 (9) | 0.0223 (10) | −0.0004 (7) | −0.0023 (8) | −0.0017 (7) |
N2 | 0.0393 (10) | 0.0208 (9) | 0.0223 (9) | −0.0038 (8) | −0.0058 (8) | 0.0007 (7) |
N3 | 0.0361 (11) | 0.0258 (10) | 0.0356 (10) | 0.0013 (9) | −0.0085 (9) | −0.0011 (8) |
N4 | 0.0549 (14) | 0.0825 (16) | 0.0521 (14) | 0.0085 (13) | 0.0102 (12) | −0.0192 (12) |
C1 | 0.0235 (10) | 0.0238 (11) | 0.0254 (11) | −0.0016 (9) | −0.0010 (9) | 0.0016 (9) |
C2 | 0.0298 (10) | 0.0199 (10) | 0.0237 (10) | 0.0022 (9) | −0.0004 (8) | −0.0002 (8) |
C3 | 0.0313 (11) | 0.0224 (11) | 0.0250 (11) | 0.0041 (9) | −0.0024 (9) | −0.0023 (9) |
C4 | 0.0299 (11) | 0.0196 (10) | 0.0237 (10) | 0.0002 (8) | −0.0032 (8) | 0.0004 (8) |
C5 | 0.0305 (11) | 0.0311 (11) | 0.0319 (12) | 0.0016 (9) | −0.0036 (9) | −0.0008 (9) |
C6 | 0.0288 (11) | 0.0267 (11) | 0.0262 (11) | 0.0032 (9) | 0.0008 (8) | 0.0001 (9) |
C7 | 0.0328 (12) | 0.0335 (13) | 0.0424 (14) | 0.0043 (10) | 0.0033 (10) | −0.0034 (10) |
C8 | 0.0366 (12) | 0.0424 (13) | 0.0420 (14) | 0.0043 (10) | 0.0100 (11) | −0.0128 (11) |
C9 | 0.0467 (13) | 0.0305 (12) | 0.0283 (12) | −0.0022 (10) | 0.0026 (10) | −0.0064 (9) |
C10 | 0.0363 (11) | 0.0212 (10) | 0.0236 (11) | −0.0028 (9) | 0.0021 (9) | 0.0018 (8) |
C11 | 0.0316 (10) | 0.0183 (10) | 0.0237 (10) | −0.0022 (8) | 0.0029 (9) | 0.0029 (8) |
C12 | 0.0293 (10) | 0.0229 (11) | 0.0259 (11) | 0.0016 (8) | −0.0022 (8) | 0.0006 (9) |
C13 | 0.0341 (14) | 0.078 (2) | 0.093 (2) | 0.0202 (13) | 0.0087 (14) | −0.0248 (17) |
C14 | 0.0431 (12) | 0.0236 (11) | 0.0191 (10) | −0.0044 (10) | 0.0012 (9) | 0.0033 (9) |
C15 | 0.0292 (11) | 0.0287 (11) | 0.0310 (12) | 0.0021 (9) | −0.0007 (9) | 0.0038 (9) |
C16 | 0.0318 (11) | 0.0235 (11) | 0.0259 (11) | 0.0005 (9) | −0.0038 (9) | 0.0045 (9) |
C17 | 0.0282 (11) | 0.0297 (12) | 0.0395 (12) | −0.0008 (9) | −0.0041 (10) | 0.0071 (10) |
C18 | 0.0436 (14) | 0.0402 (13) | 0.0376 (14) | −0.0046 (11) | −0.0165 (11) | −0.0010 (10) |
C19 | 0.0568 (15) | 0.0417 (14) | 0.0272 (13) | −0.0057 (11) | −0.0107 (11) | −0.0055 (10) |
C20 | 0.0407 (12) | 0.0308 (12) | 0.0274 (12) | −0.0015 (10) | −0.0017 (10) | −0.0037 (9) |
C21 | 0.0322 (11) | 0.0223 (11) | 0.0261 (11) | −0.0008 (9) | −0.0020 (9) | 0.0034 (9) |
C22 | 0.0290 (10) | 0.0264 (11) | 0.0228 (10) | 0.0003 (9) | −0.0008 (8) | −0.0003 (9) |
C23 | 0.0272 (12) | 0.0672 (18) | 0.0833 (19) | −0.0084 (12) | −0.0196 (13) | 0.0235 (15) |
C24 | 0.0534 (15) | 0.0461 (15) | 0.0281 (13) | 0.0006 (12) | −0.0027 (11) | −0.0103 (11) |
O1—C1 | 1.242 (2) | C8—C9 | 1.388 (3) |
O2—C3 | 1.231 (2) | C9—H9 | 0.9500 |
O3—C7 | 1.364 (2) | C9—C10 | 1.389 (3) |
O3—C13 | 1.428 (2) | C10—C11 | 1.402 (2) |
O4—C14 | 1.233 (2) | C10—C14 | 1.490 (3) |
O5—C17 | 1.355 (2) | C11—C12 | 1.513 (2) |
O5—C23 | 1.443 (3) | C12—H12A | 0.9900 |
N1—C1 | 1.330 (2) | C12—H12B | 0.9900 |
N1—C4 | 1.463 (2) | C13—H13A | 0.9800 |
N1—H1N | 0.94 (2) | C13—H13B | 0.9800 |
N2—C2 | 1.459 (2) | C13—H13C | 0.9800 |
N2—C3 | 1.333 (2) | C15—H15A | 0.9900 |
N2—H2N | 0.93 (2) | C15—H15B | 0.9900 |
N3—C14 | 1.346 (3) | C15—C16 | 1.500 (3) |
N3—H3A | 0.91 (2) | C16—C17 | 1.393 (3) |
N3—H3B | 0.94 (2) | C16—C21 | 1.370 (3) |
N4—C24 | 1.125 (3) | C17—C18 | 1.398 (3) |
C1—C2 | 1.513 (2) | C18—H18 | 0.9500 |
C2—C5 | 1.562 (3) | C18—C19 | 1.379 (3) |
C2—C12 | 1.538 (2) | C19—H19 | 0.9500 |
C3—C4 | 1.525 (2) | C19—C20 | 1.376 (3) |
C4—C15 | 1.555 (3) | C20—C21 | 1.413 (3) |
C4—C22 | 1.550 (2) | C20—C24 | 1.452 (3) |
C5—H5A | 0.9900 | C21—C22 | 1.494 (2) |
C5—H5B | 0.9900 | C22—H22A | 0.9900 |
C5—C6 | 1.502 (3) | C22—H22B | 0.9900 |
C6—C7 | 1.381 (3) | C23—H23A | 0.9800 |
C6—C11 | 1.386 (3) | C23—H23B | 0.9800 |
C7—C8 | 1.396 (3) | C23—H23C | 0.9800 |
C8—H8 | 0.9500 | ||
C7—O3—C13 | 118.11 (17) | C2—C12—C11 | 103.91 (14) |
C17—O5—C23 | 117.31 (17) | C2—C12—H12A | 111.0 |
C1—N1—C4 | 126.36 (16) | C2—C12—H12B | 111.0 |
C1—N1—H1N | 118.8 (12) | C11—C12—H12A | 111.0 |
C4—N1—H1N | 114.9 (12) | C11—C12—H12B | 111.0 |
C2—N2—C3 | 126.18 (17) | H12A—C12—H12B | 109.0 |
C2—N2—H2N | 119.1 (13) | O3—C13—H13A | 109.5 |
C3—N2—H2N | 114.7 (13) | O3—C13—H13B | 109.5 |
C14—N3—H3A | 120.6 (13) | O3—C13—H13C | 109.5 |
C14—N3—H3B | 116.3 (14) | H13A—C13—H13B | 109.5 |
H3A—N3—H3B | 122 (2) | H13A—C13—H13C | 109.5 |
O1—C1—N1 | 122.04 (18) | H13B—C13—H13C | 109.5 |
O1—C1—C2 | 120.93 (16) | O4—C14—N3 | 121.91 (19) |
N1—C1—C2 | 116.94 (17) | O4—C14—C10 | 120.76 (18) |
N2—C2—C1 | 111.04 (15) | N3—C14—C10 | 117.33 (18) |
N2—C2—C5 | 110.92 (15) | C4—C15—H15A | 111.1 |
N2—C2—C12 | 107.83 (15) | C4—C15—H15B | 111.1 |
C1—C2—C5 | 109.13 (15) | C4—C15—C16 | 103.13 (15) |
C1—C2—C12 | 113.50 (15) | H15A—C15—H15B | 109.1 |
C5—C2—C12 | 104.24 (14) | H15A—C15—C16 | 111.1 |
O2—C3—N2 | 123.62 (18) | H15B—C15—C16 | 111.1 |
O2—C3—C4 | 119.66 (16) | C15—C16—C17 | 128.11 (17) |
N2—C3—C4 | 116.70 (17) | C15—C16—C21 | 111.13 (16) |
N1—C4—C3 | 111.55 (14) | C17—C16—C21 | 120.73 (18) |
N1—C4—C15 | 111.12 (15) | O5—C17—C16 | 115.95 (17) |
N1—C4—C22 | 107.42 (15) | O5—C17—C18 | 125.02 (19) |
C3—C4—C15 | 110.33 (15) | C16—C17—C18 | 119.03 (19) |
C3—C4—C22 | 111.97 (15) | C17—C18—H18 | 120.1 |
C15—C4—C22 | 104.19 (14) | C17—C18—C19 | 119.9 (2) |
C2—C5—H5A | 111.1 | H18—C18—C19 | 120.1 |
C2—C5—H5B | 111.1 | C18—C19—H19 | 119.2 |
C2—C5—C6 | 103.32 (14) | C18—C19—C20 | 121.5 (2) |
H5A—C5—H5B | 109.1 | H19—C19—C20 | 119.2 |
H5A—C5—C6 | 111.1 | C19—C20—C21 | 118.5 (2) |
H5B—C5—C6 | 111.1 | C19—C20—C24 | 121.69 (19) |
C5—C6—C7 | 127.57 (17) | C21—C20—C24 | 119.84 (18) |
C5—C6—C11 | 111.26 (16) | C16—C21—C20 | 120.38 (17) |
C7—C6—C11 | 121.17 (18) | C16—C21—C22 | 111.17 (16) |
O3—C7—C6 | 115.78 (18) | C20—C21—C22 | 128.42 (18) |
O3—C7—C8 | 125.01 (18) | C4—C22—C21 | 103.54 (15) |
C6—C7—C8 | 119.21 (19) | C4—C22—H22A | 111.1 |
C7—C8—H8 | 120.3 | C4—C22—H22B | 111.1 |
C7—C8—C9 | 119.35 (19) | C21—C22—H22A | 111.1 |
H8—C8—C9 | 120.3 | C21—C22—H22B | 111.1 |
C8—C9—H9 | 119.0 | H22A—C22—H22B | 109.0 |
C8—C9—C10 | 122.06 (19) | O5—C23—H23A | 109.5 |
H9—C9—C10 | 119.0 | O5—C23—H23B | 109.5 |
C9—C10—C11 | 117.77 (18) | O5—C23—H23C | 109.5 |
C9—C10—C14 | 118.38 (17) | H23A—C23—H23B | 109.5 |
C11—C10—C14 | 123.81 (17) | H23A—C23—H23C | 109.5 |
C6—C11—C10 | 120.36 (17) | H23B—C23—H23C | 109.5 |
C6—C11—C12 | 109.94 (16) | N4—C24—C20 | 179.8 (3) |
C10—C11—C12 | 129.69 (17) | ||
C4—N1—C1—O1 | 177.72 (17) | C9—C10—C11—C12 | 179.64 (18) |
C4—N1—C1—C2 | 0.9 (3) | C14—C10—C11—C6 | −176.88 (18) |
C3—N2—C2—C1 | 30.0 (3) | C14—C10—C11—C12 | 1.9 (3) |
C3—N2—C2—C5 | −91.6 (2) | C6—C11—C12—C2 | 18.1 (2) |
C3—N2—C2—C12 | 154.89 (18) | C10—C11—C12—C2 | −160.86 (18) |
O1—C1—C2—N2 | 156.03 (16) | N2—C2—C12—C11 | 91.74 (16) |
O1—C1—C2—C5 | −81.4 (2) | C1—C2—C12—C11 | −144.82 (15) |
O1—C1—C2—C12 | 34.4 (2) | C5—C2—C12—C11 | −26.21 (18) |
N1—C1—C2—N2 | −27.1 (2) | C9—C10—C14—O4 | −40.1 (3) |
N1—C1—C2—C5 | 95.47 (19) | C9—C10—C14—N3 | 140.75 (19) |
N1—C1—C2—C12 | −148.77 (16) | C11—C10—C14—O4 | 137.56 (19) |
C2—N2—C3—O2 | 173.95 (17) | C11—C10—C14—N3 | −41.5 (3) |
C2—N2—C3—C4 | −4.6 (3) | N1—C4—C15—C16 | −90.53 (17) |
C1—N1—C4—C3 | 24.7 (3) | C3—C4—C15—C16 | 145.21 (15) |
C1—N1—C4—C15 | −98.9 (2) | C22—C4—C15—C16 | 24.86 (19) |
C1—N1—C4—C22 | 147.73 (18) | C4—C15—C16—C17 | 165.47 (19) |
O2—C3—C4—N1 | 159.11 (17) | C4—C15—C16—C21 | −16.4 (2) |
O2—C3—C4—C15 | −76.9 (2) | C23—O5—C17—C16 | −178.17 (19) |
O2—C3—C4—C22 | 38.7 (2) | C23—O5—C17—C18 | 1.7 (3) |
N2—C3—C4—N1 | −22.2 (2) | C15—C16—C17—O5 | −2.5 (3) |
N2—C3—C4—C15 | 101.77 (19) | C15—C16—C17—C18 | 177.59 (19) |
N2—C3—C4—C22 | −142.68 (17) | C21—C16—C17—O5 | 179.52 (18) |
N2—C2—C5—C6 | −90.68 (18) | C21—C16—C17—C18 | −0.4 (3) |
C1—C2—C5—C6 | 146.67 (16) | O5—C17—C18—C19 | 179.8 (2) |
C12—C2—C5—C6 | 25.12 (19) | C16—C17—C18—C19 | −0.3 (3) |
C2—C5—C6—C7 | 165.03 (19) | C17—C18—C19—C20 | 0.6 (3) |
C2—C5—C6—C11 | −14.9 (2) | C18—C19—C20—C21 | −0.2 (3) |
C13—O3—C7—C6 | 178.5 (2) | C18—C19—C20—C24 | 178.4 (2) |
C13—O3—C7—C8 | −1.6 (3) | C15—C16—C21—C20 | −177.53 (18) |
C5—C6—C7—O3 | 1.9 (3) | C15—C16—C21—C22 | 0.6 (2) |
C5—C6—C7—C8 | −178.0 (2) | C17—C16—C21—C20 | 0.7 (3) |
C11—C6—C7—O3 | −178.16 (18) | C17—C16—C21—C22 | 178.84 (18) |
C11—C6—C7—C8 | 2.0 (3) | C19—C20—C21—C16 | −0.5 (3) |
O3—C7—C8—C9 | −179.2 (2) | C19—C20—C21—C22 | −178.20 (19) |
C6—C7—C8—C9 | 0.7 (3) | C24—C20—C21—C16 | −179.08 (19) |
C7—C8—C9—C10 | −2.6 (3) | C24—C20—C21—C22 | 3.2 (3) |
C8—C9—C10—C11 | 1.8 (3) | C16—C21—C22—C4 | 15.6 (2) |
C8—C9—C10—C14 | 179.67 (19) | C20—C21—C22—C4 | −166.5 (2) |
C5—C6—C11—C10 | 177.23 (17) | N1—C4—C22—C21 | 93.32 (16) |
C5—C6—C11—C12 | −1.8 (2) | C3—C4—C22—C21 | −143.88 (15) |
C7—C6—C11—C10 | −2.7 (3) | C15—C4—C22—C21 | −24.64 (18) |
C7—C6—C11—C12 | 178.23 (17) | C19—C20—C24—N4 | 145 (100) |
C9—C10—C11—C6 | 0.8 (3) | C21—C20—C24—N4 | −37 (89) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.93 (2) | 1.98 (2) | 2.889 (2) | 165.7 (19) |
N1—H1N···O4ii | 0.94 (2) | 1.93 (2) | 2.867 (2) | 173.6 (18) |
N3—H3A···O2ii | 0.91 (2) | 2.05 (2) | 2.944 (2) | 166.3 (19) |
N3—H3B···N4iii | 0.94 (2) | 2.19 (2) | 3.078 (3) | 156 (2) |
C12—H12B···O1i | 0.99 | 2.67 | 3.257 (2) | 118 |
C12—H12A···O2ii | 0.99 | 2.41 | 3.301 (2) | 149 |
Symmetry codes: (i) −x+2, y+1/2, −z+1/2; (ii) −x+2, y−1/2, −z+1/2; (iii) −x+5/2, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C24H22N4O5·CH4O |
Mr | 478.50 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 170 |
a, b, c (Å) | 9.6409 (7), 10.4629 (8), 25.5588 (19) |
V (Å3) | 2578.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.44 × 0.19 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.962, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20487, 2821, 2290 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.624 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.068, 0.98 |
No. of reflections | 2821 |
No. of parameters | 317 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.12, −0.16 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Version 2.0; Macrae et al., 2006), SHELXTL (Sheldrick, 2008), publCIF (Westrip, 2008) and local programs.
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.93 (2) | 1.98 (2) | 2.889 (2) | 165.7 (19) |
N1—H1N···O4ii | 0.94 (2) | 1.93 (2) | 2.867 (2) | 173.6 (18) |
N3—H3A···O2ii | 0.91 (2) | 2.05 (2) | 2.944 (2) | 166.3 (19) |
N3—H3B···N4iii | 0.94 (2) | 2.19 (2) | 3.078 (3) | 156 (2) |
Symmetry codes: (i) −x+2, y+1/2, −z+1/2; (ii) −x+2, y−1/2, −z+1/2; (iii) −x+5/2, −y, z+1/2. |
We are pursuing a program of organic crystal engineering using a piperazinedione-based molecular scaffold to explore the effects of substituents on the crystal packing and bulk properties of such molecules (Ntirampebura et al., 2008; Weatherhead-Kloster et al., 2005; Kloster et al., 2003; Jagadish et al., 2003; Williams, Jagadish, Lansdown et al., 1999; Williams, Jagadish, Lyon et al., 1999). We consider the pentacyclic molecular framework depicted in Fig. 1 suitable for use in the exploration of structural effects on weak intermolecular associative forces and an appropriate scaffold for the design of compounds that could possess useful bulk properties. The conformational freedom of such molecules is restricted, limiting the number of possible packing options. At the same time, the attachment of groups to the scaffold can provide structural and functional variability. For example, incorporation of electron donor (D) and acceptor (A) groups, as shown in Fig. 1, renders the molecule chiral and dipolar. The central 1,4-piperazine-2,5-dione ring is known to favour the formation of supramolecular `one-dimensional' tapes through reciprocal amide-to-amide R22(8) hydrogen bonding (Bernstein et al., 1995) and in observance of the hydrogen-bonding priority rules as determined by Etter (1990). The control of order in the second and third dimensions (Fig. 1, x and y axes) depends on harnessing van der Waals interactions, arene interactions, Coulombic interactions and/or additional hydrogen-bonding interactions, all of which are affected by variation of ring substituents.
While the majority of piperazinedione-containing compounds do reliably form extended R22(8) hydrogen-bonded tapes, our studies and those of others (Howes et al., 1983; Caira et al., 2002) have shown that the crystal structure can be solvent-dependant and that not all compounds follow the R22(8) hydrogen-bonding pattern. We report here the methanol solvate, (I), of (S,S)-cyclo-[(2-amino-4-carbamoyl-7-methoxy-2,3-dihydro-1H-indene-2-carboxylic acid)(2-amino-4-cyano-7-methoxy-2,3-dihydro-1H-indene-2-carboxylic acid)], which is an example of a piperazinedione-containing compound that does not follow the general trend.
The structure of (I) is shown in the scheme and the conformer present in the crystal is shown in Fig. 2. The compound crystallizes in the space group P212121, consistent with its chiral nature. The molecular dimensions are unexceptional. The indane rings, which are perpendicular to the piperazinedione ring, exhibit minimal flexibility, with the cyclopentene rings both adopting envelope conformations. A mean plane fitted through atoms C2 and C5–C12 has an r.m.s. deviation of 0.1172 Å, while a mean plane fitted through atoms C4 and C15–C22 has an r.m.s. deviation of 0.1084 Å. The methoxy groups are essentially coplanar with the arene unit of the indane group, while the benzamide group is not; the angle between a mean plane fitted through atoms O4, N3, C14 and C10 and a plane fitted through the six-membered ring is 41.40 (9)°.
The crystal packing of (I) is very different from most other piperazinedione compounds. The presence of benzamide and nitrile groups permits the formation of an alternative extended three-dimensional hydrogen-bonded network. The methanol solvate molecule, removed using SQUEEZE routine of PLATON (Spek, 2003), has no role in the hydrogen bonding; this explains the desolvation observed when the crystals were removed from the mother liquor. Fig. 3 shows (I) in a space-filling representation, with the methanol molecule shown in one of its several orientations. It would seem that the methanol molecule occupies space between the two methoxy groups but, suprisingly, with no appreciable interactions between compound and solvent to anchor the methanol in one orientation. Instead, it is disordered over several positions in this `pocket'. An a axis projection (Fig. 4) shows how the R22(8) motif is avoided. Two motifs are found, each sharing a single N—H···O interaction between the piperazinedione rings. One motif can be described as R22(13), in which the acetamide group acts as a donor, and the second can be described as R22(12), in which the acetamide acts as an acceptor. These two motifs allow the structure to extend in the a and b directions. The second N—H acetamide H atom forms an N—H···N interaction with an adjacent nitrile group, and this interaction allows the crystal structure to propagate along the c axis (Fig. 5). From this analysis, it can be seen that no good hydrogen-bond donor or acceptor is left without a partner, and so the solvent methanol molecule, while perhaps playing a space-filling role for the three-dimensional structure, does not form a part of the three-dimensional hydrogen-bonded framework itself. Unlike other indane-containing piperazinedione crystal structures, arene interactions are not a significant force in this crystal structure, there being essentially just one interaction (Fig. 6), which most probably results from the orientation of the molecules to maximize hydrogen bonding.
In summary, while the majority of indane-containing piperazinedione compounds produce predicatable R22(8) crystal packing motifs, the properties of which can be tuned by appropriate ring subsitution, there are compounds which do not follow this trend. In the case of (I), the benzamide group provides the piperazinedione ring with competition for hydrogen-bonding donor and acceptor sites, and also involves the nitrile group as an acceptor. Maximization of hydrogen bonding in this compound requires that the amide-to-amide R22(8) motif be displaced in favour of a more complex and extensive hydrogen-bonded network.