In the title complex, {[Ba(C5H6O4)(H2O)]·C5H8O4}n, the neutral dimethylmalonic acid molecules and the dianionic (dimethylmalonato)barium metal-organic framework are linked by cocrystallization. The Ba atom, in a distorted monocapped square-antiprismatic geometry, is nine-coordinated by seven O atoms of four different dimethylmalonate groups and by two water molecules. This arrangement generates a two-dimensional layer parallel to the bc plane. Two such layers sandwich another layer composed of neutral dimethylmalonic acid molecules that are involved in intermolecular hydrogen bonds within this layer and to neighboring layers. This complex is different from the dimethylmalonate-Ba complex reported previously. The title compound displays a novel structure type and represents a new member of the substituted malonate series of alkaline earth complexes.
Supporting information
CCDC reference: 718132
The title complex was prepared under continuous stirring with successive
addition of dimethylmalonic acid (0.53 g, 4 mmol) and Ba(OH)2.8H2O (0.63 g, 2 mmol) to distilled water (15 ml) at room temperature. After filtration,
slow evaporation over a period of two weeks at room temperature provided
colorless needle-shaped crystals of (I).
The H atoms of the water molecule were found in difference Fourier maps.
However, during refinement, they were fixed at O–H distances of 0.86 Å and
their Uiso(H) values were set at 1.2Ueq(O). The H atoms of
CH3 and OH groups were treated as riding [C—H = 0.96 Å, O—H = 0.82 Å and and Uiso(H) = 1.5Ueq(C,O)]. Please check changes
to text.
Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Poly[[aqua(2,2-dimethylmalonato)barium(II)] 2,2-dimethylmalonic acid solvate]
top
Crystal data top
[Ba(C5H6O4)(H2O)]·C5H8O4 | F(000) = 816 |
Mr = 417.57 | Dx = 1.941 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4236 reflections |
a = 17.300 (3) Å | θ = 2.1–27.9° |
b = 8.6107 (17) Å | µ = 2.82 mm−1 |
c = 9.6027 (19) Å | T = 133 K |
β = 92.41 (3)° | Needle, colorless |
V = 1429.2 (5) Å3 | 0.14 × 0.08 × 0.06 mm |
Z = 4 | |
Data collection top
Rigaku Saturn diffractometer | 2488 independent reflections |
Radiation source: rotating anode | 2224 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.030 |
Detector resolution: 27.873 pixels mm-1 | θmax = 25.0°, θmin = 2.6° |
ω scans | h = −20→20 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −8→10 |
Tmin = 0.738, Tmax = 0.852 | l = −11→9 |
7812 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.024 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0444P)2] where P = (Fo2 + 2Fc2)/3 |
2488 reflections | (Δ/σ)max = 0.001 |
187 parameters | Δρmax = 1.23 e Å−3 |
0 restraints | Δρmin = −0.88 e Å−3 |
Crystal data top
[Ba(C5H6O4)(H2O)]·C5H8O4 | V = 1429.2 (5) Å3 |
Mr = 417.57 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 17.300 (3) Å | µ = 2.82 mm−1 |
b = 8.6107 (17) Å | T = 133 K |
c = 9.6027 (19) Å | 0.14 × 0.08 × 0.06 mm |
β = 92.41 (3)° | |
Data collection top
Rigaku Saturn diffractometer | 2488 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | 2224 reflections with I > 2σ(I) |
Tmin = 0.738, Tmax = 0.852 | Rint = 0.030 |
7812 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.024 | 0 restraints |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.04 | Δρmax = 1.23 e Å−3 |
2488 reflections | Δρmin = −0.88 e Å−3 |
187 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Ba1 | −0.030233 (10) | 0.741550 (16) | 0.030014 (16) | 0.01787 (10) | |
O1 | 0.07501 (11) | 0.9751 (2) | 0.06517 (18) | 0.0247 (4) | |
O2 | 0.17179 (11) | 1.1406 (2) | 0.09712 (19) | 0.0232 (4) | |
O3 | 0.07639 (11) | 0.95037 (19) | 0.40554 (17) | 0.0221 (4) | |
O4 | 0.06452 (13) | 0.7286 (2) | 0.2881 (2) | 0.0208 (5) | |
C1 | 0.13815 (16) | 1.0144 (3) | 0.1250 (3) | 0.0201 (6) | |
C2 | 0.17173 (15) | 0.9021 (3) | 0.2370 (3) | 0.0200 (6) | |
C3 | 0.09984 (15) | 0.8550 (3) | 0.3157 (3) | 0.0197 (6) | |
C4 | 0.2063 (2) | 0.7638 (3) | 0.1602 (4) | 0.0254 (7) | |
H4A | 0.2489 | 0.7987 | 0.1075 | 0.038* | |
H4B | 0.1674 | 0.7188 | 0.0983 | 0.038* | |
H4C | 0.2242 | 0.6873 | 0.2268 | 0.038* | |
C5 | 0.23316 (16) | 0.9777 (3) | 0.3338 (3) | 0.0259 (6) | |
H5A | 0.2482 | 0.9065 | 0.4070 | 0.039* | |
H5B | 0.2124 | 1.0703 | 0.3736 | 0.039* | |
H5C | 0.2775 | 1.0038 | 0.2817 | 0.039* | |
O9 | −0.09323 (11) | 0.9041 (2) | 0.26237 (18) | 0.0232 (4) | |
H9A | −0.1426 | 0.8906 | 0.2565 | 0.028* | |
H9B | −0.0826 | 1.0004 | 0.2479 | 0.028* | |
O5 | 0.30911 (14) | 1.25906 (19) | 0.1387 (3) | 0.0266 (5) | |
H5 | 0.2661 | 1.2194 | 0.1311 | 0.040* | |
O6 | 0.25209 (11) | 1.4111 (2) | 0.2934 (2) | 0.0279 (5) | |
O7 | 0.40271 (11) | 1.5477 (2) | 0.06535 (19) | 0.0259 (4) | |
H7 | 0.4306 | 1.5643 | 0.0000 | 0.039* | |
O8 | 0.50343 (11) | 1.4024 (2) | 0.14196 (19) | 0.0249 (4) | |
C6 | 0.30970 (16) | 1.3659 (3) | 0.2379 (3) | 0.0219 (6) | |
C7 | 0.39149 (16) | 1.4185 (3) | 0.2814 (3) | 0.0219 (6) | |
C8 | 0.43836 (16) | 1.4529 (3) | 0.1552 (3) | 0.0211 (6) | |
C9 | 0.38863 (17) | 1.5669 (3) | 0.3704 (3) | 0.0320 (7) | |
H9D | 0.4403 | 1.5976 | 0.3985 | 0.048* | |
H9E | 0.3596 | 1.5470 | 0.4516 | 0.048* | |
H9C | 0.3642 | 1.6486 | 0.3167 | 0.048* | |
C10 | 0.4297 (2) | 1.2853 (4) | 0.3649 (3) | 0.0313 (7) | |
H10A | 0.4317 | 1.1944 | 0.3073 | 0.047* | |
H10B | 0.4000 | 1.2632 | 0.4448 | 0.047* | |
H10C | 0.4812 | 1.3148 | 0.3949 | 0.047* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ba1 | 0.02030 (15) | 0.01595 (14) | 0.01761 (14) | −0.00054 (5) | 0.00364 (9) | 0.00016 (5) |
O1 | 0.0255 (11) | 0.0203 (9) | 0.0279 (10) | −0.0035 (8) | −0.0013 (9) | 0.0031 (8) |
O2 | 0.0231 (11) | 0.0193 (10) | 0.0273 (10) | −0.0026 (8) | 0.0023 (8) | 0.0029 (8) |
O3 | 0.0242 (10) | 0.0197 (9) | 0.0227 (10) | −0.0001 (8) | 0.0068 (8) | −0.0021 (7) |
O4 | 0.0211 (12) | 0.0189 (10) | 0.0225 (11) | −0.0014 (8) | 0.0036 (9) | −0.0004 (7) |
C1 | 0.0225 (15) | 0.0187 (13) | 0.0195 (13) | 0.0002 (11) | 0.0054 (11) | −0.0035 (10) |
C2 | 0.0191 (14) | 0.0197 (14) | 0.0215 (13) | −0.0008 (11) | 0.0031 (11) | 0.0003 (10) |
C3 | 0.0216 (15) | 0.0197 (14) | 0.0176 (13) | 0.0022 (11) | −0.0006 (11) | 0.0012 (10) |
C4 | 0.0258 (19) | 0.0224 (16) | 0.0284 (18) | 0.0038 (11) | 0.0066 (15) | 0.0029 (10) |
C5 | 0.0233 (16) | 0.0305 (15) | 0.0238 (14) | −0.0035 (12) | 0.0006 (12) | 0.0042 (12) |
O9 | 0.0230 (11) | 0.0201 (9) | 0.0265 (10) | −0.0022 (8) | 0.0029 (8) | 0.0016 (7) |
O5 | 0.0192 (13) | 0.0308 (13) | 0.0302 (13) | −0.0071 (8) | 0.0069 (10) | −0.0064 (7) |
O6 | 0.0194 (11) | 0.0283 (11) | 0.0365 (11) | 0.0014 (8) | 0.0066 (9) | −0.0030 (8) |
O7 | 0.0240 (11) | 0.0278 (10) | 0.0262 (10) | 0.0003 (8) | 0.0058 (8) | 0.0072 (8) |
O8 | 0.0206 (11) | 0.0273 (10) | 0.0272 (10) | 0.0020 (8) | 0.0063 (8) | 0.0041 (8) |
C6 | 0.0225 (15) | 0.0178 (13) | 0.0254 (14) | 0.0000 (11) | 0.0019 (12) | 0.0041 (11) |
C7 | 0.0188 (15) | 0.0235 (14) | 0.0235 (14) | −0.0014 (11) | 0.0037 (11) | 0.0006 (11) |
C8 | 0.0217 (16) | 0.0161 (13) | 0.0255 (14) | −0.0042 (11) | 0.0005 (11) | −0.0012 (10) |
C9 | 0.0273 (17) | 0.0355 (17) | 0.0331 (16) | −0.0032 (13) | 0.0020 (13) | −0.0090 (13) |
C10 | 0.0222 (17) | 0.0432 (17) | 0.0289 (17) | 0.0037 (14) | 0.0055 (14) | 0.0122 (15) |
Geometric parameters (Å, º) top
Ba1—O1i | 2.7072 (18) | C5—H5A | 0.9600 |
Ba1—O3ii | 2.7108 (17) | C5—H5B | 0.9600 |
Ba1—O1 | 2.7243 (18) | C5—H5C | 0.9600 |
Ba1—O3iii | 2.7835 (18) | O9—H9A | 0.8611 |
Ba1—O2i | 2.875 (2) | O9—H9B | 0.8616 |
Ba1—O9 | 2.8861 (18) | O5—C6 | 1.324 (3) |
Ba1—O4 | 2.916 (2) | O5—H5 | 0.8200 |
Ba1—O9iii | 3.0215 (19) | O6—C6 | 1.213 (3) |
Ba1—Ba1i | 4.6138 (9) | O7—C8 | 1.322 (3) |
Ba1—Ba1iv | 4.3338 (8) | O7—H7 | 0.8200 |
O4—Ba1v | 2.910 (2) | O8—C8 | 1.218 (3) |
O1—C1 | 1.259 (3) | C6—C7 | 1.527 (4) |
O2—C1 | 1.267 (3) | C7—C8 | 1.515 (4) |
O3—C3 | 1.270 (3) | C7—C10 | 1.533 (4) |
O4—C3 | 1.270 (3) | C7—C9 | 1.540 (4) |
C1—C2 | 1.541 (4) | C9—H9D | 0.9600 |
C2—C5 | 1.528 (4) | C9—H9E | 0.9600 |
C2—C4 | 1.536 (4) | C9—H9C | 0.9600 |
C2—C3 | 1.537 (4) | C10—H10A | 0.9600 |
C4—H4A | 0.9600 | C10—H10B | 0.9600 |
C4—H4B | 0.9600 | C10—H10C | 0.9600 |
C4—H4C | 0.9600 | | |
| | | |
O1i—Ba1—O3ii | 145.87 (6) | C1—O2—Ba1i | 90.11 (15) |
O1i—Ba1—O1 | 63.69 (7) | C3—O3—Ba1vi | 149.20 (16) |
O3ii—Ba1—O1 | 148.90 (6) | C3—O3—Ba1v | 98.27 (15) |
O1i—Ba1—O3iii | 125.13 (5) | Ba1vi—O3—Ba1v | 104.13 (6) |
O3ii—Ba1—O3iii | 75.87 (6) | C3—O4—Ba1v | 92.30 (15) |
O1—Ba1—O3iii | 92.29 (6) | C3—O4—Ba1 | 113.14 (16) |
O1i—Ba1—O2i | 46.52 (5) | Ba1v—O4—Ba1 | 111.08 (7) |
O3ii—Ba1—O2i | 99.76 (5) | O1—C1—O2 | 122.1 (2) |
O1—Ba1—O2i | 110.18 (5) | O1—C1—C2 | 116.4 (2) |
O3iii—Ba1—O2i | 126.53 (5) | O2—C1—C2 | 121.5 (2) |
O1i—Ba1—O9 | 73.26 (5) | O1—C1—Ba1i | 58.47 (13) |
O3ii—Ba1—O9 | 98.49 (5) | O2—C1—Ba1i | 66.13 (13) |
O1—Ba1—O9 | 79.54 (6) | C2—C1—Ba1i | 161.53 (17) |
O3iii—Ba1—O9 | 153.96 (5) | C5—C2—C4 | 110.3 (2) |
O2i—Ba1—O9 | 79.31 (6) | C5—C2—C3 | 111.7 (2) |
O1i—Ba1—O4iii | 79.27 (5) | C4—C2—C3 | 111.8 (2) |
O3ii—Ba1—O4iii | 116.43 (5) | C5—C2—C1 | 112.9 (2) |
O1—Ba1—O4iii | 68.77 (6) | C4—C2—C1 | 107.1 (2) |
O3iii—Ba1—O4iii | 45.89 (5) | C3—C2—C1 | 102.7 (2) |
O2i—Ba1—O4iii | 97.37 (6) | O3—C3—O4 | 122.1 (2) |
O9—Ba1—O4iii | 144.89 (5) | O3—C3—C2 | 116.8 (2) |
O1i—Ba1—O4 | 117.65 (5) | O4—C3—C2 | 121.1 (2) |
O3ii—Ba1—O4 | 86.05 (5) | O3—C3—Ba1v | 58.76 (13) |
O1—Ba1—O4 | 64.78 (5) | O4—C3—Ba1v | 64.50 (14) |
O3iii—Ba1—O4 | 89.05 (6) | C2—C3—Ba1v | 169.66 (17) |
O2i—Ba1—O4 | 144.37 (6) | C2—C4—H4A | 109.5 |
O9—Ba1—O4 | 65.06 (6) | C2—C4—H4B | 109.5 |
O4iii—Ba1—O4 | 111.50 (7) | H4A—C4—H4B | 109.5 |
O1i—Ba1—O9iii | 89.94 (5) | C2—C4—H4C | 109.5 |
O3ii—Ba1—O9iii | 73.21 (5) | H4A—C4—H4C | 109.5 |
O1—Ba1—O9iii | 128.83 (5) | H4B—C4—H4C | 109.5 |
O3iii—Ba1—O9iii | 67.06 (5) | C2—C5—H5A | 109.5 |
O2i—Ba1—O9iii | 60.99 (5) | C2—C5—H5B | 109.5 |
O9—Ba1—O9iii | 136.42 (7) | H5A—C5—H5B | 109.5 |
O4iii—Ba1—O9iii | 63.44 (5) | C2—C5—H5C | 109.5 |
O4—Ba1—O9iii | 151.28 (5) | H5A—C5—H5C | 109.5 |
O1i—Ba1—C1i | 23.35 (6) | H5B—C5—H5C | 109.5 |
O3ii—Ba1—C1i | 123.47 (6) | Ba1—O9—Ba1v | 108.78 (6) |
O1—Ba1—C1i | 86.89 (6) | Ba1—O9—H9A | 106.9 |
O3iii—Ba1—C1i | 125.77 (6) | Ba1v—O9—H9A | 108.7 |
O2i—Ba1—C1i | 23.76 (6) | Ba1—O9—H9B | 104.6 |
O9—Ba1—C1i | 78.81 (6) | Ba1v—O9—H9B | 117.7 |
O4iii—Ba1—C1i | 84.62 (6) | H9A—O9—H9B | 109.6 |
O4—Ba1—C1i | 136.84 (6) | C6—O5—H5 | 109.5 |
O9iii—Ba1—C1i | 71.87 (6) | C8—O7—H7 | 109.5 |
O1i—Ba1—C3iii | 102.38 (6) | O6—C6—O5 | 123.8 (3) |
O3ii—Ba1—C3iii | 97.33 (6) | O6—C6—C7 | 123.6 (2) |
O1—Ba1—C3iii | 77.78 (6) | O5—C6—C7 | 112.4 (2) |
O3iii—Ba1—C3iii | 22.96 (6) | C8—C7—C6 | 111.1 (2) |
O2i—Ba1—C3iii | 115.16 (6) | C8—C7—C10 | 109.3 (2) |
O9—Ba1—C3iii | 156.28 (6) | C6—C7—C10 | 107.2 (2) |
O4iii—Ba1—C3iii | 23.20 (6) | C8—C7—C9 | 108.2 (2) |
O4—Ba1—C3iii | 98.65 (6) | C6—C7—C9 | 110.3 (2) |
O9iii—Ba1—C3iii | 65.56 (6) | C10—C7—C9 | 110.7 (2) |
C1i—Ba1—C3iii | 106.66 (6) | O8—C8—O7 | 124.0 (2) |
O1i—Ba1—Ba1iv | 152.55 (4) | O8—C8—C7 | 122.8 (2) |
O3ii—Ba1—Ba1iv | 38.52 (4) | O7—C8—C7 | 113.1 (2) |
O1—Ba1—Ba1iv | 124.14 (4) | C7—C9—H9D | 109.5 |
O3iii—Ba1—Ba1iv | 37.34 (3) | C7—C9—H9E | 109.5 |
O2i—Ba1—Ba1iv | 119.23 (4) | H9D—C9—H9E | 109.5 |
O9—Ba1—Ba1iv | 132.02 (3) | C7—C9—H9C | 109.5 |
O4iii—Ba1—Ba1iv | 80.29 (3) | H9D—C9—H9C | 109.5 |
O4—Ba1—Ba1iv | 86.92 (3) | H9E—C9—H9C | 109.5 |
O9iii—Ba1—Ba1iv | 64.47 (4) | C7—C10—H10A | 109.5 |
C1i—Ba1—Ba1iv | 136.09 (5) | C7—C10—H10B | 109.5 |
C3iii—Ba1—Ba1iv | 59.23 (5) | H10A—C10—H10B | 109.5 |
C1—O1—Ba1i | 98.18 (15) | C7—C10—H10C | 109.5 |
C1—O1—Ba1 | 144.83 (16) | H10A—C10—H10C | 109.5 |
Ba1i—O1—Ba1 | 116.31 (7) | H10B—C10—H10C | 109.5 |
| | | |
O1i—Ba1—O1—C1 | 167.8 (3) | O1—C1—C2—C5 | −162.6 (2) |
O3ii—Ba1—O1—C1 | 2.3 (3) | O2—C1—C2—C5 | 16.1 (3) |
O3iii—Ba1—O1—C1 | −63.7 (3) | Ba1i—C1—C2—C5 | −93.6 (5) |
O2i—Ba1—O1—C1 | 165.8 (3) | O1—C1—C2—C4 | 75.8 (3) |
O9—Ba1—O1—C1 | 91.4 (3) | O2—C1—C2—C4 | −105.5 (3) |
O4iii—Ba1—O1—C1 | −104.0 (3) | Ba1i—C1—C2—C4 | 144.8 (5) |
O4—Ba1—O1—C1 | 24.2 (3) | O1—C1—C2—C3 | −42.1 (3) |
O9iii—Ba1—O1—C1 | −125.8 (3) | O2—C1—C2—C3 | 136.6 (2) |
C1i—Ba1—O1—C1 | 170.6 (3) | Ba1i—C1—C2—C3 | 26.9 (6) |
C3iii—Ba1—O1—C1 | −81.6 (3) | Ba1vi—O3—C3—O4 | −123.5 (3) |
Ba1iv—Ba1—O1—C1 | −42.8 (3) | Ba1v—O3—C3—O4 | 13.0 (3) |
O1i—Ba1—O1—Ba1i | 0.0 | Ba1vi—O3—C3—C2 | 54.2 (4) |
O3ii—Ba1—O1—Ba1i | −165.49 (7) | Ba1v—O3—C3—C2 | −169.29 (18) |
O3iii—Ba1—O1—Ba1i | 128.51 (7) | Ba1vi—O3—C3—Ba1v | −136.5 (3) |
O2i—Ba1—O1—Ba1i | −1.98 (9) | Ba1v—O4—C3—O3 | −12.3 (3) |
O9—Ba1—O1—Ba1i | −76.39 (7) | Ba1—O4—C3—O3 | 101.8 (2) |
O4iii—Ba1—O1—Ba1i | 88.24 (8) | Ba1v—O4—C3—C2 | 170.1 (2) |
O4—Ba1—O1—Ba1i | −143.62 (9) | Ba1—O4—C3—C2 | −75.8 (3) |
O9iii—Ba1—O1—Ba1i | 66.46 (9) | Ba1—O4—C3—Ba1v | 114.12 (12) |
C1i—Ba1—O1—Ba1i | 2.80 (8) | C5—C2—C3—O3 | 41.4 (3) |
C3iii—Ba1—O1—Ba1i | 110.60 (8) | C4—C2—C3—O3 | 165.6 (2) |
Ba1iv—Ba1—O1—Ba1i | 149.41 (4) | C1—C2—C3—O3 | −79.9 (3) |
O1i—Ba1—O4—C3 | −22.0 (2) | C5—C2—C3—O4 | −140.9 (3) |
O3ii—Ba1—O4—C3 | −176.18 (18) | C4—C2—C3—O4 | −16.7 (4) |
O1—Ba1—O4—C3 | 14.94 (17) | C1—C2—C3—O4 | 97.9 (3) |
O3iii—Ba1—O4—C3 | 107.92 (18) | C5—C2—C3—Ba1v | −20.8 (10) |
O2i—Ba1—O4—C3 | −74.9 (2) | C4—C2—C3—Ba1v | 103.4 (9) |
O9—Ba1—O4—C3 | −74.93 (17) | C1—C2—C3—Ba1v | −142.1 (9) |
O4iii—Ba1—O4—C3 | 66.93 (17) | O1i—Ba1—O9—Ba1v | −158.20 (7) |
O9iii—Ba1—O4—C3 | 140.58 (17) | O3ii—Ba1—O9—Ba1v | 55.80 (7) |
C1i—Ba1—O4—C3 | −38.9 (2) | O1—Ba1—O9—Ba1v | −92.72 (7) |
C3iii—Ba1—O4—C3 | 87.0 (2) | O3iii—Ba1—O9—Ba1v | −19.31 (14) |
Ba1iv—Ba1—O4—C3 | 145.23 (18) | O2i—Ba1—O9—Ba1v | 154.21 (7) |
O1i—Ba1—O4—Ba1v | 80.26 (7) | O4iii—Ba1—O9—Ba1v | −118.16 (9) |
O3ii—Ba1—O4—Ba1v | −73.97 (6) | O4—Ba1—O9—Ba1v | −25.80 (5) |
O1—Ba1—O4—Ba1v | 117.15 (7) | O9iii—Ba1—O9—Ba1v | 130.32 (7) |
O3iii—Ba1—O4—Ba1v | −149.87 (6) | C1i—Ba1—O9—Ba1v | 178.41 (7) |
O2i—Ba1—O4—Ba1v | 27.31 (11) | C3iii—Ba1—O9—Ba1v | −75.53 (15) |
O9—Ba1—O4—Ba1v | 27.29 (5) | Ba1iv—Ba1—O9—Ba1v | 34.28 (8) |
O4iii—Ba1—O4—Ba1v | 169.14 (7) | O6—C6—C7—C8 | −136.7 (3) |
O9iii—Ba1—O4—Ba1v | −117.20 (10) | O5—C6—C7—C8 | 46.9 (3) |
C1i—Ba1—O4—Ba1v | 63.31 (10) | O6—C6—C7—C10 | 103.8 (3) |
C3iii—Ba1—O4—Ba1v | −170.80 (7) | O5—C6—C7—C10 | −72.5 (3) |
Ba1iv—Ba1—O4—Ba1v | −112.56 (5) | O6—C6—C7—C9 | −16.7 (4) |
Ba1i—O1—C1—O2 | −19.0 (3) | O5—C6—C7—C9 | 167.0 (2) |
Ba1—O1—C1—O2 | 172.05 (17) | C6—C7—C8—O8 | −131.6 (3) |
Ba1i—O1—C1—C2 | 159.69 (18) | C10—C7—C8—O8 | −13.5 (4) |
Ba1—O1—C1—C2 | −9.3 (4) | C9—C7—C8—O8 | 107.2 (3) |
Ba1—O1—C1—Ba1i | −168.9 (3) | C6—C7—C8—O7 | 51.1 (3) |
Ba1i—O2—C1—O1 | 17.7 (2) | C10—C7—C8—O7 | 169.2 (2) |
Ba1i—O2—C1—C2 | −161.0 (2) | C9—C7—C8—O7 | −70.1 (3) |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x, y−1/2, −z+1/2; (iii) x, −y+3/2, z−1/2; (iv) −x, −y+1, −z; (v) x, −y+3/2, z+1/2; (vi) −x, y+1/2, −z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H9A···O6ii | 0.86 | 1.94 | 2.778 (3) | 163 |
O9—H9B···O4vi | 0.86 | 2.02 | 2.883 (2) | 177 |
O5—H5···O2 | 0.82 | 1.78 | 2.601 (3) | 174 |
O7—H7···O8vii | 0.82 | 1.84 | 2.656 (3) | 178 |
Symmetry codes: (ii) −x, y−1/2, −z+1/2; (vi) −x, y+1/2, −z+1/2; (vii) −x+1, −y+3, −z. |
Experimental details
Crystal data |
Chemical formula | [Ba(C5H6O4)(H2O)]·C5H8O4 |
Mr | 417.57 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 133 |
a, b, c (Å) | 17.300 (3), 8.6107 (17), 9.6027 (19) |
β (°) | 92.41 (3) |
V (Å3) | 1429.2 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.82 |
Crystal size (mm) | 0.14 × 0.08 × 0.06 |
|
Data collection |
Diffractometer | Rigaku Saturn diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2005) |
Tmin, Tmax | 0.738, 0.852 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7812, 2488, 2224 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.595 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.024, 0.068, 1.04 |
No. of reflections | 2488 |
No. of parameters | 187 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.23, −0.88 |
Selected geometric parameters (Å, º) topBa1—O1i | 2.7072 (18) | O4—Ba1v | 2.910 (2) |
Ba1—O3ii | 2.7108 (17) | O1—C1 | 1.259 (3) |
Ba1—O1 | 2.7243 (18) | O2—C1 | 1.267 (3) |
Ba1—O3iii | 2.7835 (18) | O3—C3 | 1.270 (3) |
Ba1—O2i | 2.875 (2) | O4—C3 | 1.270 (3) |
Ba1—O9 | 2.8861 (18) | O5—C6 | 1.324 (3) |
Ba1—O4 | 2.916 (2) | O6—C6 | 1.213 (3) |
Ba1—O9iii | 3.0215 (19) | O7—C8 | 1.322 (3) |
Ba1—Ba1i | 4.6138 (9) | O8—C8 | 1.218 (3) |
Ba1—Ba1iv | 4.3338 (8) | | |
| | | |
O1—C1—O2 | 122.1 (2) | O6—C6—O5 | 123.8 (3) |
C3—C2—C1 | 102.7 (2) | C8—C7—C6 | 111.1 (2) |
O3—C3—O4 | 122.1 (2) | O8—C8—O7 | 124.0 (2) |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x, y−1/2, −z+1/2; (iii) x, −y+3/2, z−1/2; (iv) −x, −y+1, −z; (v) x, −y+3/2, z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H9A···O6ii | 0.86 | 1.94 | 2.778 (3) | 163 |
O9—H9B···O4vi | 0.86 | 2.02 | 2.883 (2) | 177 |
O5—H5···O2 | 0.82 | 1.78 | 2.601 (3) | 174 |
O7—H7···O8vii | 0.82 | 1.84 | 2.656 (3) | 178 |
Symmetry codes: (ii) −x, y−1/2, −z+1/2; (vi) −x, y+1/2, −z+1/2; (vii) −x+1, −y+3, −z. |
The characterization of alkaline earth carboxylates is an area of continuous interest owing to their relevance in a wide range of applications in materials science, including their use as processible oxide precursors by soft chemistry routes (Baggio et al., 2004; Bae et al., 2002) and in studies of heterobimetallic complexes (Guo & Guo, 2006; Guo & Cao, 2006; Guo & Zhang, 2008). Malonate and substituted malonate derivatives are often ligands of choice for the design of such metal-organic frameworks or molecular assemblies because of their manifold coordination modes and the variety of the resulting architectures. For the complexes of barium, two works have been published, one containing both malonate dianion and malonic acid molecule (Hodgson & Asplaund, 1991) and the other involving such as mono-deprotonation of benzylmalonic acid, benzylmalonate, dimethylmalonate dianion and hydrogen ethylmalonate anion (Yokomori et al., 1998) as ligands. In heterobimetallic malonate complexes involving transition and alkaline-earth metals, barium atoms have also been used to construct coordination polymers by acting as building blocks (Guo & Guo, 2006; Guo & Cao, 2006; Guo & Zhang, 2008). In the course of our studies of heterobimetallic malonate complexes involving Zn and Ba atoms, we used dimethylmalonic acid as a ligand, expecting to obtain a structure similar or isotypic to that of [BaZn(C3H2O4)2(H2O)4]n (Guo & Guo, 2006). When we used only barium hydroxide and dimethylmalonic acid, a stoichiometric mixture proved unsuccessful, but interestingly, use of a slight excess of dimethylmalonic acid did allow the formation of the novel nine-coordinated dimethylmalonate–barium complex (I), which exhibits the unexpected result of co-crystallization of the neutral molecules of dimethylmalonic acid in addition to the dianionic dimethylmalonate barium metal–organic framework. We report here its crystal structure.
The asymmetric unit in the structure of (I) comprises one Ba atom, one complete dimethylmalonate dianion, one coordinated water molecule and one neutral dimethylmalonic acid molecule, and is shown in Fig. 1 in a symmetry-expanded view which displays the full coordination of the Ba atom. Selected geometric parameters are given in Table 1.
As can be seen in Fig. 1, the coordination polyhedron around barium is nine-coordinate. The Ba atom has a distorted monocapped square-antiprismatic environment. The four coordination sites of the basal plane are occupied by atoms O1, O4, O3iii and O4iii (see Fig. 1 for symmetry codes). The adjacent plane contains atoms O1i and O3ii and two coordinated water molecules (O9 and O9iii). Finally, the capping site is occupied by atom O2i. The Ba—O(dimethylmalonate) distances are in the range 2.7072 (18)–2.916 (2) Å, which is not inconsistent with the distances in catena-poly[(µ5-dimethylmalonato)(µ3-dimethylmalonato)pentaaquadibarium], which has two crystallographically independent Ba atoms; the distances in (I) are a little longer than those for the eight-coordinate Ba atom but are somewhat shorter than those reported for the nine-coordinate Ba atom (Yokomori et al., 1998).
In the present structure, the variability of the substituted malonate ligand can be clearly seen (Fig. 1). Monodentate, bidentate–chelating, chelated six-membered and bridging bonding modes are all present. Atoms O1 and O2 of the O1/C1/O2 carboxylate group uses a bidentate 1,2-chelating mode to connect with atom Ba1i; atoms O3 and O4 are coordinated in a similar manner to atom Ba1v (see Fig. 1 for symmetry codes). Atom O3ii adopts both a monodentate mode, to connect with atom Ba1, and a bridging bonding mode to link atoms Ba1iv and Ba1. Furthermore, the whole dianionic dimethylmalonate ligand chelates atom Ba1 to form a six-membered ring. The bond angle at C2 [C3—C2—C1 = 102.7 (2)°] is smaller than the normal value, suggesting that there is greater strain in the six-membered ring than in the ten-coordinate catena-poly[(µ2-aqua)-bis(µ2-benzylhydrogenmalonato-O,O,O',O'')barium] complex (Yokomori et al., 1998). At the same time, atoms O1 and O4 also adopt a bridging bonding mode to connect with two different Ba atoms. In the dianionic dimethylmalonate ligand, the O—C—O angles for the two carboxylate groups are both 122.1 (2)°, and the four C—O bond distances are in the range 1.259 (3)–1.270 (3) Å. This indicates that both carboxylate groups have an evident mesomeric effect. As is observed in other alkylmalonate structure, the two carboxylate groups are non-coplanar (Yokomori et al., 1998). The O1/C1/O2 carboxylate group is rotated by 42.7 (4)° out of the C1/C2/C3 plane, while the O3/C3/O4 group forms an angle with the same plane of 80.9 (4)°; the dihedral angle between the two carboxylate groups is 89.3 (4)°.
As can be seen in Fig. 2, the structure as a whole consists of two distinct layers that stack alternatingly in the a direction. The first is composed entirely of Ba atoms, dimethylmalonate dianions and water molecules and occurs near x = 0 and x = 1. In this case, each dianionic dimethylmalonate ligand binds to four different Ba atoms, and each Ba atom binds to four different dimethylmalonate dianions. In the crystallographic c direction, the neighbouring Ba atoms are bridged via atom O4 and water molecule O9; in the crystallographic b direction, the connection between Ba atoms is achieved via bridging involving two O3 and two O1 atoms, which occur alternately. In this way, each group of four Ba atoms builds up a grid. These grids are further joined into a two-dimensional layer structure with a (4,4)-grid topology in the direction of the bc plane (Fig.2).
The other layer, alternating with the first and centered on x = 1/2, only contains neutral molecules of dimethylmalonic acid. Within this layer (Fig. 2), intermolecular O7—H7···O8vii hydrogen-bond interactions form dimers of graph set D22(8) (Bernstein et al., 1995) comprising two molecules of dimethylmalonic acid (see Table 2). The connection between the neighbouring layers is mainly completed via a hydrogen-bond interaction between atom H9A of water molecule O9 and atom O6ii and a strong intramolecular O5—H5···O2 hydrogen-bond interaction (Brown, 1976). In addition, atom H9B of water molecule O9 and atom O4vi engage in another distinct hydrogen-bonding interaction (see Table 2). These together make the structure a three-dimensional network.
In the dimethylmalonic acid molecule, the O—C—O angles for two carboxylate groups are almost the same [O6—C6—O5 = 123.8 (3)° and O8—C8—O7 = 124.0 (2)°]. Each carboxylate groups has one single and one double bond. The two C—O single-bond distances (O5—C6 and O7—C8) are 1.324 (3) and 1.322 (3) Å, respectively, while the two C—O double-bond distances (O6—C6 and O8—C8) are 1.213 (3) and 1.218 (3) Å, respectively; they are longer than the values of 1.308 (3) and 1.206 (2) Å reported for the free acid (Sheng-zhi & Mak, 1986). As is observed in the above dimethylmalonate structure, the two carboxylate groups are again non-coplanar; the dihedral angle between the O5/C6/O6 and O7/C8/O8 planes is 79.6 (4)°, the group at C6 lying 45.6 (4)° out of the C6/C7/C8 plane, while the other group forms an angle of 50.1 (4)° with this plane.
A comparison with other reported malonate and substituted malonate–barium compounds (Hodgson & Asplaund, 1991; Yokomori et al., 1998) reveals that the title compound has a novel structure type and represents a new member of the substituted malonate series of alkaline earth complexes. The previously reported complex catena-poly[(µ5-dimethylmalonato)(µ3-dimethylmalonato)pentaaquadibarium] (Yokomori et al., 1998) is quite different as two crystallographically independent Ba atoms are present. One is coordinated to five dimethylmalonate O atoms and three water molecules, while the other is bonded to six dimethylmalonate O atoms and three water molecules. Moreover the two independent dimethylmalonate dianions exhibit different coordination modes.