Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614002563/sk3518sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229614002563/sk3518Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229614002563/sk3518Isup3.cml |
CCDC reference: 985094
L-Phenylalanine is an essential aromatic and hydrophobic amino acid and is one of the 20 amino acids found in proteins. X-ray diffraction studies by Gurskaya & Vainshtein (1963) started with the acidic form of L-phenylalanine. These authors noted an orthorhombic cell with space group P212121 and unit-cell dimensions a = 27.68 Å, b = 6.98 Å and c = 5.34 Å. Their model was derived from a three-dimensional Patterson analysis and described a layered structure in which the groups of hydrogen-bonded phenylalanine molecules are stabilized by van der Waals forces. Some time later, Al-Karaghouli & Koetzle (1975) conducted a single-crystal neutron study of the same molecule, allowing precise determination of the H-atom positions and the hydrogen-bonding network. The space group and unit-cell dimensions were consistent with the X-ray results (a = 27.76 Å, b = 7.07 Å and c = 5.38 Å). The structure formed a layered system held together by hydrogen-bonded chloride ions with each chloride ion linking four molecules. The inter-layer interactions were also assumed to be weak van der Waals forces, confirming the work of Gurskaya & Vainshtein (1963). Powder diffraction studies have also been carried out: Khawas (1970) crystallized L-phenylalanine from aqueous solution but had difficulties growing large L-phenylalanine single crystals. Their samples were nonetheless highly crystalline and X-ray powder diffraction experiments were carried out yielding a unit cell of a = 13.13 Å, b = 6.59 Å, c = 10.348 Å and β = 104.38°, space group P21.
L-Phenylalanine is interesting for its importance in human health and implications in conditions such as lethargy, liver damage and phenylketonuria (PKU). PKU is a good example of the consequences of an excess of L-phenylalanine in the brain. High concentrations of phenylalanine are extremely harmful especially during early infancy and, if not diagnosed and treated immediately (with a phenylalanine-reduced diet), result in profound and permanent mental retardation, epilespy and microcephaly (Martynyuk et al., 2005).
Recently, L-phenylalanine has attracted interest for its possible link to self-assembly in amyloid type systems. Studies on the islet amyloid polypeptide (IAPP) (Tenidis et al. (2000)), known to be associated with Type II diabetes, have shown that phenylalanine plays a crucial role in the formation of amyloid fibrils. Azriel et al. (2001) have argued that there is `experimental support for the key role of the phenylalanine residue in self-assembly associated with amyloid formation`.
Over the past decade, there has been extensive research into the assembly properties of a wide range of peptide systems and their ability to form nanotubes are of potential commercial significance. More recently, a number of groups have reported the assembly properties of simpler systems, such as diphenylalanine, and also a number of amino acid derivative systems. For example, Görbitz (2001) observed nanotube formation from diphenylalanine, and Gazit and co-workers (Adler-Abramovich et al., 2006; Tamamis et al., 2009)) have subsequently studied the physical and thermal properties of these nanotubes. Adler-Abramovich et al. (2012) has shown that L-phenylalanine, like diphenylalanine, has remarkable properties of self-assembly from aqueous solution, forming stable nanofilaments that have been observed by electron microscopy. Hence, this relatively simple molecule appears to have complex behaviour that may be of relevance for a number of the biomedical issues.
L-Phenylalanine was purchased from Sigma–Aldrich. The best crystals were obtained in crystallization screenings using drops of 20 ml containing 10 mg ml-1 of L-phenylalanine in 15% polyethylene glycol (PEG) 4 K, 15% propan-2-ol and 0.05 M NaCl. Crystals formed over a period of one week. There were then cryocooled straight from the drop without the addition of cryoprotectant.
X-ray diffraction data were collected on ID23-1 at the ESRF to a resolution of 0.62 Å.
Crystal data, data collection and structure refinement details are summarized in Table 1. H atoms were positioned geometrically and refined as riding, with C—H = 0.95 (aromatic), 0.99 (methylene) or 1.0 Å (NCR2) and N—H = 0.91 Å (tertiary amine), and with Uiso(H) = 1.5Ueq(N) for amine H and 1.2Ueq(C) for all others. Nine non-H atoms (C1A, N1A, C2A, C1C, C2C, O1C, C1D, N1D and C2D) were refined with isotropic displacement parameters to avoid nonpositive definites (NPDs).
As part of a set of X-ray diffraction experiments designed to characterize this phenylalanine nanotube structure, a new crystalline form of zwitterionic L-phenylalanine [systematic name: (2S)-2-azaniumyl-1-hydroxy-3-phenylpropan-1-olate] has been identified (Fig. 1 and Table 2). Extensive macroscopic characterization work on phenylalanine has led to a full structural characterization of this new crystalline form. It should be noted that although this structure was indexed as a primitive unit cell, it exhibits a pseudo-B-face-centring geometry, as can be seen in Fig. 2. A layered structure stabilized by alternating hydrophobic (aromatic environment) and hydrophilic interactions is observed in the crystal packing. Each layer is composed of two rows of phenylalanine molecules held together by hydrogen bonds, whereas the interlayer interactions between the hydrophobic rings are thought to be related to π–π stacking (Figs. 3 and 5). Previous studies on aromatic interactions between phenyl rings implicated π–π stacking interactions as playing a critical role in self-assembly (Gillard et al., 1997). Olsztynska et al. (2006) suggested that the presence of hydrophobic interactions in L-phenylalanine dissolved in water leads to the aggregation of the molecules via π–π stacking. Our structure adopts laterally displaced rings involving residues B and D, and A and C. Furthermore, edge-to-face ring interactions (Jennings et al., 2001) are noted between layers, with the rings forming an angle of approximately 45° with respect to each other. Both L-phenylalanine–L-phenylalanine malonate (Görbitz & Etter, 1992) and L-phenylalanine hydrochloride (Al-Karaghouli & Koetzle, 1975) adopt a similar structure to the one published here, with a combination of an edge-to-face and parallel-displaced conformations. However, in both these studies the rings are all in register, as opposed to the four different conformations adopted by the molecules presented here. To the best of our knowledge, this is the only L-phenylalanine structure showing four distinct conformations of the amino acid. The existence of two types of π-stacking interactions within this structure is also consistent with the structure of the amyloid forming peptide KFFEAAAKKFFE solved by Makin et al. (2005). This configuration corresponds to an energically favoured stacking arrangement (McGaughey et al., 1998).
Within the individual asymmetric units, hydrogen bonding occurs between the carboxylate and amine groups (Fig. 4) forming a two-dimensional hydrogen-bond network parallel with the ac plane. Each molecule takes part in four intermolecular N—H···O hydrogen bonds (Table 2), three of which are illustrated in Fig. 4. The fourth N—H···O interaction is not visible in Fig. 4 since it occurs between residues in neighbouring layers of the lattice. Collectively, these hydrogen bonds, within and between layers, in combination with the π–π stacking geometry described above, form a strong set of interaction that hold this structure together and that are likely to be significant in the self-assembly of phenylalanine fibrils (Figs. 3 and 5). Our observations in this structure that the phenylalanine rings are located in the hydrophobic region of the structure can be related to the observations of Chelli et al. (2002) that π-stacking interactions between the rings are more frequent in the hydrophobic core of the protein.
As seen in Fig. 6, L-phenylalanine is found by light microscopy to form fibrous structures, reflecting its fundamental tendency to self-assemble into fibrils.
The relationship between this water-free structure and the filamentous structure as seen by fibre diffraction and electron microscopy is part of an ongoing study that will be published elsewhere (Mossou et al., 2014). It appears likely that the π–π stacking between neighbouring phenyl rings is the basis of the unique specific-aggregation properties that lead to the formation of the nanotube structures, with the short axis of the unit cell corresponding to the fibre stacking axis of the fibrils.
Data collection: MxCuBE (Gabadinho et al., 2010); cell refinement: XDS (Kabsch, 1993); data reduction: XDS (Kabsch, 1993); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
C9H11NO2 | F(000) = 704 |
Mr = 165.19 | Dx = 1.349 Mg m−3 |
Monoclinic, P21 | Synchrotron radiation, λ = 0.61995 Å |
a = 6.0010 (5) Å | Cell parameters from 841 reflections |
b = 30.8020 (17) Å | θ = 1–20° |
c = 8.7980 (4) Å | µ = 0.10 mm−1 |
β = 90.120 (4)° | T = 100 K |
V = 1626.24 (17) Å3 | Polygon, colourless |
Z = 8 | 0.20 × 0.10 × 0.07 mm |
MD2M mini diffractometer | Rint = 0.064 |
Radiation source: synchrotron | θmax = 30.5°, θmin = 2.0° |
profile from θ /2θ scans | h = −9→9 |
45788 measured reflections | k = −47→47 |
12740 independent reflections | l = −13→12 |
10932 reflections with I > 2σ(I) |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.064 | w = 1/[σ2(Fo2) + (0.0808P)2 + 1.0335P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.170 | (Δ/σ)max < 0.001 |
S = 1.15 | Δρmax = 0.91 e Å−3 |
12740 reflections | Δρmin = −0.75 e Å−3 |
389 parameters | Absolute structure: Flack x determined using 4805 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
1 restraint | Absolute structure parameter: 0.0 (4) |
C9H11NO2 | V = 1626.24 (17) Å3 |
Mr = 165.19 | Z = 8 |
Monoclinic, P21 | Synchrotron radiation, λ = 0.61995 Å |
a = 6.0010 (5) Å | µ = 0.10 mm−1 |
b = 30.8020 (17) Å | T = 100 K |
c = 8.7980 (4) Å | 0.20 × 0.10 × 0.07 mm |
β = 90.120 (4)° |
MD2M mini diffractometer | 10932 reflections with I > 2σ(I) |
45788 measured reflections | Rint = 0.064 |
12740 independent reflections |
R[F2 > 2σ(F2)] = 0.064 | H-atom parameters constrained |
wR(F2) = 0.170 | Δρmax = 0.91 e Å−3 |
S = 1.15 | Δρmin = −0.75 e Å−3 |
12740 reflections | Absolute structure: Flack x determined using 4805 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
389 parameters | Absolute structure parameter: 0.0 (4) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O2A | 0.5490 (3) | 0.02363 (6) | 0.7803 (2) | 0.0063 (3) | |
O1A | 0.2463 (3) | 0.01989 (7) | 0.9286 (2) | 0.0081 (3) | |
C1A | 0.4529 (4) | 0.01845 (7) | 0.9055 (3) | 0.0034 (4)* | |
N1A | 0.5090 (3) | 0.03736 (6) | 1.1741 (2) | 0.0049 (3)* | |
H11A | 0.5181 | 0.0658 | 1.1463 | 0.007* | |
H12A | 0.5929 | 0.0329 | 1.2590 | 0.007* | |
H13A | 0.3645 | 0.0305 | 1.1939 | 0.007* | |
C2A | 0.5939 (4) | 0.00934 (7) | 1.0478 (3) | 0.0038 (4)* | |
H21A | 0.7538 | 0.0163 | 1.0271 | 0.005* | |
C3A | 0.5733 (4) | −0.03755 (8) | 1.1029 (3) | 0.0083 (4) | |
H31A | 0.6520 | −0.0401 | 1.2015 | 0.010* | |
H32A | 0.4138 | −0.0438 | 1.1214 | 0.010* | |
C4A | 0.6634 (4) | −0.07162 (8) | 0.9970 (3) | 0.0077 (4) | |
C5A | 0.5310 (5) | −0.08962 (9) | 0.8829 (3) | 0.0135 (5) | |
H51A | 0.3845 | −0.0788 | 0.8668 | 0.016* | |
C6A | 0.6109 (7) | −0.12319 (10) | 0.7923 (4) | 0.0215 (7) | |
H61A | 0.5191 | −0.1350 | 0.7144 | 0.026* | |
C7A | 0.8230 (7) | −0.13945 (10) | 0.8148 (4) | 0.0232 (7) | |
H71A | 0.8761 | −0.1629 | 0.7547 | 0.028* | |
C8A | 0.9577 (6) | −0.12114 (11) | 0.9263 (5) | 0.0219 (7) | |
H81A | 1.1042 | −0.1319 | 0.9421 | 0.026* | |
C9A | 0.8794 (5) | −0.08719 (9) | 1.0148 (4) | 0.0138 (5) | |
H91A | 0.9746 | −0.0744 | 1.0885 | 0.017* | |
O2B | 0.5510 (3) | 0.11439 (6) | 0.9990 (2) | 0.0069 (3) | |
O1B | 0.2387 (3) | 0.11734 (7) | 0.8591 (2) | 0.0088 (3) | |
N1B | 0.5026 (3) | 0.10167 (7) | 0.6082 (2) | 0.0043 (3) | |
H11B | 0.5811 | 0.1075 | 0.5222 | 0.006* | |
H12B | 0.3548 | 0.1058 | 0.5901 | 0.006* | |
H13B | 0.5265 | 0.0736 | 0.6366 | 0.006* | |
C2B | 0.5773 (4) | 0.13141 (8) | 0.7326 (3) | 0.0038 (4) | |
H21B | 0.7402 | 0.1273 | 0.7519 | 0.005* | |
C3B | 0.5340 (4) | 0.17805 (8) | 0.6786 (3) | 0.0072 (4) | |
H31B | 0.6239 | 0.1835 | 0.5863 | 0.009* | |
H32B | 0.3750 | 0.1808 | 0.6498 | 0.009* | |
C4B | 0.5883 (4) | 0.21249 (8) | 0.7953 (3) | 0.0065 (4) | |
C1B | 0.4455 (4) | 0.12022 (8) | 0.8765 (3) | 0.0040 (4) | |
C5B | 0.4241 (4) | 0.24153 (9) | 0.8420 (3) | 0.0103 (5) | |
H51B | 0.2777 | 0.2388 | 0.8018 | 0.012* | |
C9B | 0.8012 (5) | 0.21697 (9) | 0.8562 (3) | 0.0108 (5) | |
H91B | 0.9159 | 0.1976 | 0.8259 | 0.013* | |
C7B | 0.6817 (5) | 0.27839 (9) | 1.0067 (3) | 0.0127 (5) | |
H71B | 0.7137 | 0.3005 | 1.0788 | 0.015* | |
C8B | 0.8480 (5) | 0.24964 (9) | 0.9611 (3) | 0.0120 (5) | |
H81B | 0.9941 | 0.2523 | 1.0019 | 0.014* | |
C6B | 0.4693 (5) | 0.27442 (10) | 0.9461 (4) | 0.0150 (5) | |
H61B | 0.3552 | 0.2941 | 0.9754 | 0.018* | |
O1C | 0.7424 (3) | 0.01836 (6) | 0.4276 (2) | 0.0087 (3)* | |
O2C | 1.0545 (3) | 0.02108 (6) | 0.2877 (2) | 0.0068 (3) | |
N1C | 1.0008 (3) | 0.03647 (7) | 0.6786 (2) | 0.0047 (3) | |
H11C | 1.0162 | 0.0646 | 0.6484 | 0.007* | |
H12C | 1.0814 | 0.0320 | 0.7648 | 0.007* | |
H13C | 0.8545 | 0.0308 | 0.6971 | 0.007* | |
C2C | 1.0835 (4) | 0.00685 (7) | 0.5555 (3) | 0.0032 (4)* | |
H21C | 1.2452 | 0.0125 | 0.5368 | 0.004* | |
C4C | 1.1204 (4) | −0.07435 (8) | 0.5024 (3) | 0.0070 (4) | |
C9C | 1.3395 (4) | −0.07789 (9) | 0.4487 (3) | 0.0114 (5) | |
H91C | 1.4494 | −0.0577 | 0.4807 | 0.014* | |
C3C | 1.0525 (4) | −0.03957 (8) | 0.6140 (3) | 0.0074 (4) | |
H31C | 1.1411 | −0.0432 | 0.7083 | 0.014 (10)* | |
H32C | 0.8938 | −0.0438 | 0.6406 | 0.017* | |
C5C | 0.9634 (5) | −0.10435 (9) | 0.4522 (4) | 0.0125 (5) | |
H51C | 0.8140 | −0.1021 | 0.4869 | 0.015* | |
C6C | 1.0202 (5) | −0.13751 (10) | 0.3527 (4) | 0.0169 (6) | |
H61C | 0.9102 | −0.1576 | 0.3197 | 0.020* | |
C8C | 1.3957 (5) | −0.11105 (10) | 0.3487 (4) | 0.0148 (5) | |
H81C | 1.5442 | −0.1131 | 0.3121 | 0.018* | |
C1C | 0.9501 (4) | 0.01616 (7) | 0.4101 (3) | 0.0036 (4)* | |
C7C | 1.2387 (5) | −0.14121 (9) | 0.3013 (4) | 0.0157 (5) | |
H71C | 1.2797 | −0.1641 | 0.2346 | 0.019* | |
O1D | 0.7469 (3) | 0.11726 (7) | 0.3557 (2) | 0.0082 (3) | |
O2D | 1.0503 (3) | 0.11366 (6) | 0.5056 (2) | 0.0062 (3) | |
C3D | 1.0828 (4) | 0.17255 (8) | 0.1799 (3) | 0.0075 (4) | |
H31D | 1.1711 | 0.1749 | 0.0853 | 0.009* | |
H32D | 0.9258 | 0.1790 | 0.1538 | 0.009* | |
C2D | 1.0964 (4) | 0.12565 (7) | 0.2371 (3) | 0.0040 (4)* | |
H21D | 1.2550 | 0.1179 | 0.2593 | 0.005* | |
N1D | 1.0083 (3) | 0.09752 (6) | 0.1121 (3) | 0.0043 (3)* | |
H11D | 1.0965 | 0.1003 | 0.0287 | 0.006* | |
H12D | 0.8669 | 0.1058 | 0.0885 | 0.006* | |
H13D | 1.0077 | 0.0693 | 0.1432 | 0.006* | |
C4D | 1.1644 (4) | 0.20645 (8) | 0.2902 (3) | 0.0065 (4) | |
C5D | 1.0215 (5) | 0.22383 (9) | 0.3992 (3) | 0.0115 (5) | |
H51D | 0.8748 | 0.2126 | 0.4084 | 0.014* | |
C9D | 1.3814 (4) | 0.22282 (9) | 0.2807 (4) | 0.0115 (5) | |
H91D | 1.4830 | 0.2108 | 0.2095 | 0.014* | |
C8D | 1.4493 (5) | 0.25671 (10) | 0.3754 (4) | 0.0147 (5) | |
H81D | 1.5964 | 0.2679 | 0.3673 | 0.018* | |
C6D | 1.0893 (5) | 0.25721 (10) | 0.4944 (4) | 0.0157 (5) | |
H61D | 0.9902 | 0.2685 | 0.5686 | 0.019* | |
C1D | 0.9534 (4) | 0.11820 (7) | 0.3788 (3) | 0.0036 (4)* | |
C7D | 1.3045 (5) | 0.27409 (9) | 0.4805 (4) | 0.0148 (5) | |
H71D | 1.3509 | 0.2975 | 0.5434 | 0.018* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O2A | 0.0057 (7) | 0.0107 (8) | 0.0026 (8) | 0.0018 (6) | 0.0002 (6) | 0.0016 (6) |
O1A | 0.0020 (7) | 0.0187 (9) | 0.0035 (8) | −0.0010 (6) | −0.0015 (6) | 0.0018 (7) |
C3A | 0.0111 (10) | 0.0099 (10) | 0.0041 (11) | 0.0028 (8) | 0.0001 (8) | 0.0020 (8) |
C4A | 0.0094 (10) | 0.0067 (9) | 0.0068 (12) | 0.0008 (8) | −0.0004 (8) | 0.0024 (8) |
C5A | 0.0174 (12) | 0.0118 (11) | 0.0112 (13) | 0.0000 (9) | −0.0082 (10) | 0.0018 (9) |
C6A | 0.0405 (19) | 0.0116 (12) | 0.0124 (15) | −0.0031 (12) | −0.0041 (13) | −0.0009 (10) |
C7A | 0.040 (2) | 0.0094 (12) | 0.0206 (18) | 0.0034 (12) | 0.0120 (14) | −0.0010 (11) |
C8A | 0.0177 (14) | 0.0130 (12) | 0.035 (2) | 0.0065 (11) | 0.0084 (13) | 0.0013 (12) |
C9A | 0.0094 (11) | 0.0111 (11) | 0.0210 (15) | 0.0030 (9) | −0.0036 (10) | 0.0005 (10) |
O2B | 0.0061 (7) | 0.0119 (8) | 0.0028 (8) | −0.0003 (6) | −0.0023 (6) | 0.0014 (6) |
O1B | 0.0032 (7) | 0.0203 (9) | 0.0028 (9) | 0.0004 (6) | 0.0007 (6) | 0.0031 (7) |
N1B | 0.0022 (7) | 0.0085 (9) | 0.0023 (9) | 0.0002 (6) | 0.0008 (6) | −0.0003 (6) |
C2B | 0.0016 (8) | 0.0086 (9) | 0.0010 (10) | 0.0002 (7) | 0.0003 (7) | −0.0003 (7) |
C3B | 0.0107 (10) | 0.0082 (10) | 0.0027 (11) | −0.0002 (8) | 0.0002 (8) | 0.0027 (7) |
C4B | 0.0074 (9) | 0.0075 (9) | 0.0045 (11) | −0.0018 (8) | −0.0005 (8) | 0.0019 (7) |
C1B | 0.0033 (8) | 0.0083 (9) | 0.0005 (10) | 0.0007 (7) | 0.0006 (7) | 0.0005 (7) |
C5B | 0.0070 (10) | 0.0117 (11) | 0.0123 (13) | 0.0002 (8) | 0.0006 (8) | −0.0005 (9) |
C9B | 0.0086 (10) | 0.0102 (11) | 0.0134 (13) | −0.0006 (8) | −0.0015 (9) | 0.0021 (9) |
C7B | 0.0175 (13) | 0.0089 (10) | 0.0117 (13) | −0.0069 (9) | 0.0022 (10) | 0.0006 (9) |
C8B | 0.0113 (11) | 0.0131 (11) | 0.0115 (13) | −0.0051 (9) | −0.0040 (9) | 0.0037 (9) |
C6B | 0.0162 (12) | 0.0117 (11) | 0.0171 (15) | −0.0004 (10) | 0.0048 (10) | −0.0036 (10) |
O2C | 0.0074 (7) | 0.0114 (8) | 0.0018 (8) | 0.0014 (6) | 0.0004 (6) | 0.0023 (6) |
N1C | 0.0028 (8) | 0.0089 (9) | 0.0025 (9) | 0.0000 (6) | −0.0020 (6) | −0.0001 (7) |
C4C | 0.0096 (10) | 0.0068 (10) | 0.0045 (11) | 0.0016 (8) | 0.0008 (8) | 0.0016 (7) |
C9C | 0.0086 (10) | 0.0122 (11) | 0.0133 (13) | 0.0005 (8) | 0.0004 (9) | −0.0001 (9) |
C3C | 0.0101 (10) | 0.0087 (10) | 0.0033 (11) | 0.0015 (8) | −0.0002 (8) | 0.0020 (8) |
C5C | 0.0108 (11) | 0.0134 (11) | 0.0132 (14) | −0.0007 (9) | 0.0029 (9) | −0.0008 (9) |
C6C | 0.0198 (13) | 0.0136 (12) | 0.0173 (16) | −0.0036 (10) | 0.0016 (11) | −0.0042 (10) |
C8C | 0.0126 (12) | 0.0148 (12) | 0.0170 (15) | 0.0057 (9) | 0.0050 (10) | 0.0007 (10) |
C7C | 0.0213 (14) | 0.0108 (11) | 0.0150 (15) | 0.0031 (10) | 0.0017 (11) | −0.0027 (10) |
O1D | 0.0030 (7) | 0.0203 (9) | 0.0015 (8) | 0.0026 (6) | 0.0009 (6) | 0.0023 (6) |
O2D | 0.0061 (7) | 0.0103 (8) | 0.0022 (8) | 0.0003 (6) | −0.0017 (6) | 0.0012 (6) |
C3D | 0.0108 (10) | 0.0074 (9) | 0.0042 (11) | 0.0004 (8) | 0.0016 (8) | 0.0032 (7) |
C4D | 0.0068 (9) | 0.0062 (9) | 0.0065 (11) | 0.0006 (7) | 0.0007 (8) | 0.0029 (7) |
C5D | 0.0102 (11) | 0.0107 (11) | 0.0135 (14) | −0.0024 (8) | 0.0058 (9) | −0.0016 (9) |
C9D | 0.0069 (10) | 0.0122 (11) | 0.0153 (14) | −0.0008 (8) | 0.0031 (9) | 0.0034 (9) |
C8D | 0.0097 (11) | 0.0138 (12) | 0.0205 (15) | −0.0036 (9) | −0.0028 (10) | 0.0036 (10) |
C6D | 0.0204 (13) | 0.0136 (12) | 0.0132 (15) | 0.0000 (10) | 0.0038 (11) | −0.0034 (10) |
C7D | 0.0192 (13) | 0.0098 (11) | 0.0152 (14) | −0.0029 (10) | −0.0044 (11) | 0.0009 (9) |
O2A—C1A | 1.255 (3) | O1C—C1C | 1.258 (3) |
O1A—C1A | 1.258 (3) | O2C—C1C | 1.256 (3) |
C1A—C2A | 1.535 (3) | N1C—C2C | 1.501 (3) |
N1A—C2A | 1.498 (3) | N1C—H11C | 0.9100 |
N1A—H11A | 0.9100 | N1C—H12C | 0.9100 |
N1A—H12A | 0.9100 | N1C—H13C | 0.9100 |
N1A—H13A | 0.9100 | C2C—C3C | 1.531 (3) |
C2A—C3A | 1.528 (3) | C2C—C1C | 1.534 (3) |
C2A—H21A | 1.0000 | C2C—H21C | 1.0000 |
C3A—C4A | 1.505 (4) | C4C—C5C | 1.391 (4) |
C3A—H31A | 0.9900 | C4C—C9C | 1.402 (4) |
C3A—H32A | 0.9900 | C4C—C3C | 1.510 (4) |
C4A—C9A | 1.390 (4) | C9C—C8C | 1.390 (4) |
C4A—C5A | 1.394 (4) | C9C—H91C | 0.9500 |
C5A—C6A | 1.392 (5) | C3C—H31C | 0.9900 |
C5A—H51A | 0.9500 | C3C—H32C | 0.9900 |
C6A—C7A | 1.381 (6) | C5C—C6C | 1.389 (4) |
C6A—H61A | 0.9500 | C5C—H51C | 0.9500 |
C7A—C8A | 1.390 (6) | C6C—C7C | 1.393 (5) |
C7A—H71A | 0.9500 | C6C—H61C | 0.9500 |
C8A—C9A | 1.386 (5) | C8C—C7C | 1.387 (4) |
C8A—H81A | 0.9500 | C8C—H81C | 0.9500 |
C9A—H91A | 0.9500 | C7C—H71C | 0.9500 |
O2B—C1B | 1.262 (3) | O1D—C1D | 1.256 (3) |
O1B—C1B | 1.253 (3) | O2D—C1D | 1.264 (3) |
N1B—C2B | 1.496 (3) | C3D—C4D | 1.506 (4) |
N1B—H11B | 0.9100 | C3D—C2D | 1.532 (3) |
N1B—H12B | 0.9100 | C3D—H31D | 0.9900 |
N1B—H13B | 0.9100 | C3D—H32D | 0.9900 |
C2B—C1B | 1.533 (3) | C2D—N1D | 1.496 (3) |
C2B—C3B | 1.535 (3) | C2D—C1D | 1.532 (3) |
C2B—H21B | 1.0000 | C2D—H21D | 1.0000 |
C3B—C4B | 1.511 (4) | N1D—H11D | 0.9100 |
C3B—H31B | 0.9900 | N1D—H12D | 0.9100 |
C3B—H32B | 0.9900 | N1D—H13D | 0.9100 |
C4B—C9B | 1.392 (4) | C4D—C5D | 1.395 (4) |
C4B—C5B | 1.393 (4) | C4D—C9D | 1.399 (4) |
C5B—C6B | 1.392 (4) | C5D—C6D | 1.387 (4) |
C5B—H51B | 0.9500 | C5D—H51D | 0.9500 |
C9B—C8B | 1.394 (4) | C9D—C8D | 1.396 (4) |
C9B—H91B | 0.9500 | C9D—H91D | 0.9500 |
C7B—C6B | 1.386 (4) | C8D—C7D | 1.379 (5) |
C7B—C8B | 1.394 (4) | C8D—H81D | 0.9500 |
C7B—H71B | 0.9500 | C6D—C7D | 1.398 (4) |
C8B—H81B | 0.9500 | C6D—H61D | 0.9500 |
C6B—H61B | 0.9500 | C7D—H71D | 0.9500 |
O2A—C1A—O1A | 126.3 (2) | C2C—N1C—H11C | 109.5 |
O2A—C1A—C2A | 119.1 (2) | C2C—N1C—H12C | 109.5 |
O1A—C1A—C2A | 114.6 (2) | H11C—N1C—H12C | 109.5 |
C2A—N1A—H11A | 109.5 | C2C—N1C—H13C | 109.5 |
C2A—N1A—H12A | 109.5 | H11C—N1C—H13C | 109.5 |
H11A—N1A—H12A | 109.5 | H12C—N1C—H13C | 109.5 |
C2A—N1A—H13A | 109.5 | N1C—C2C—C3C | 106.5 (2) |
H11A—N1A—H13A | 109.5 | N1C—C2C—C1C | 108.36 (18) |
H12A—N1A—H13A | 109.5 | C3C—C2C—C1C | 113.04 (19) |
N1A—C2A—C3A | 106.3 (2) | N1C—C2C—H21C | 109.6 |
N1A—C2A—C1A | 108.17 (18) | C3C—C2C—H21C | 109.6 |
C3A—C2A—C1A | 112.74 (19) | C1C—C2C—H21C | 109.6 |
N1A—C2A—H21A | 109.8 | C5C—C4C—C9C | 118.5 (2) |
C3A—C2A—H21A | 109.8 | C5C—C4C—C3C | 119.6 (2) |
C1A—C2A—H21A | 109.8 | C9C—C4C—C3C | 121.9 (2) |
C4A—C3A—C2A | 115.7 (2) | C8C—C9C—C4C | 120.0 (3) |
C4A—C3A—H31A | 108.4 | C8C—C9C—H91C | 120.0 |
C2A—C3A—H31A | 108.4 | C4C—C9C—H91C | 120.0 |
C4A—C3A—H32A | 108.4 | C4C—C3C—C2C | 114.2 (2) |
C2A—C3A—H32A | 108.4 | C4C—C3C—H31C | 108.7 |
H31A—C3A—H32A | 107.4 | C2C—C3C—H31C | 108.7 |
C9A—C4A—C5A | 118.2 (3) | C4C—C3C—H32C | 108.7 |
C9A—C4A—C3A | 120.5 (2) | C2C—C3C—H32C | 108.7 |
C5A—C4A—C3A | 121.2 (2) | H31C—C3C—H32C | 107.6 |
C6A—C5A—C4A | 120.8 (3) | C6C—C5C—C4C | 121.4 (3) |
C6A—C5A—H51A | 119.6 | C6C—C5C—H51C | 119.3 |
C4A—C5A—H51A | 119.6 | C4C—C5C—H51C | 119.3 |
C7A—C6A—C5A | 120.4 (3) | C5C—C6C—C7C | 119.8 (3) |
C7A—C6A—H61A | 119.8 | C5C—C6C—H61C | 120.1 |
C5A—C6A—H61A | 119.8 | C7C—C6C—H61C | 120.1 |
C6A—C7A—C8A | 119.2 (3) | C7C—C8C—C9C | 121.1 (3) |
C6A—C7A—H71A | 120.4 | C7C—C8C—H81C | 119.4 |
C8A—C7A—H71A | 120.4 | C9C—C8C—H81C | 119.4 |
C9A—C8A—C7A | 120.3 (3) | O2C—C1C—O1C | 126.5 (2) |
C9A—C8A—H81A | 119.8 | O2C—C1C—C2C | 118.5 (2) |
C7A—C8A—H81A | 119.8 | O1C—C1C—C2C | 115.1 (2) |
C8A—C9A—C4A | 121.0 (3) | C8C—C7C—C6C | 119.2 (3) |
C8A—C9A—H91A | 119.5 | C8C—C7C—H71C | 120.4 |
C4A—C9A—H91A | 119.5 | C6C—C7C—H71C | 120.4 |
C2B—N1B—H11B | 109.5 | C4D—C3D—C2D | 115.1 (2) |
C2B—N1B—H12B | 109.5 | C4D—C3D—H31D | 108.5 |
H11B—N1B—H12B | 109.5 | C2D—C3D—H31D | 108.5 |
C2B—N1B—H13B | 109.5 | C4D—C3D—H32D | 108.5 |
H11B—N1B—H13B | 109.5 | C2D—C3D—H32D | 108.5 |
H12B—N1B—H13B | 109.5 | H31D—C3D—H32D | 107.5 |
N1B—C2B—C1B | 108.17 (19) | N1D—C2D—C3D | 106.61 (19) |
N1B—C2B—C3B | 107.22 (19) | N1D—C2D—C1D | 108.26 (18) |
C1B—C2B—C3B | 112.3 (2) | C3D—C2D—C1D | 112.3 (2) |
N1B—C2B—H21B | 109.7 | N1D—C2D—H21D | 109.9 |
C1B—C2B—H21B | 109.7 | C3D—C2D—H21D | 109.9 |
C3B—C2B—H21B | 109.7 | C1D—C2D—H21D | 109.9 |
C4B—C3B—C2B | 114.2 (2) | C2D—N1D—H11D | 109.5 |
C4B—C3B—H31B | 108.7 | C2D—N1D—H12D | 109.5 |
C2B—C3B—H31B | 108.7 | H11D—N1D—H12D | 109.5 |
C4B—C3B—H32B | 108.7 | C2D—N1D—H13D | 109.5 |
C2B—C3B—H32B | 108.7 | H11D—N1D—H13D | 109.5 |
H31B—C3B—H32B | 107.6 | H12D—N1D—H13D | 109.5 |
C9B—C4B—C5B | 118.2 (2) | C5D—C4D—C9D | 118.4 (2) |
C9B—C4B—C3B | 121.8 (2) | C5D—C4D—C3D | 120.6 (2) |
C5B—C4B—C3B | 120.0 (2) | C9D—C4D—C3D | 120.9 (2) |
O1B—C1B—O2B | 126.1 (2) | C6D—C5D—C4D | 121.4 (3) |
O1B—C1B—C2B | 115.3 (2) | C6D—C5D—H51D | 119.3 |
O2B—C1B—C2B | 118.6 (2) | C4D—C5D—H51D | 119.3 |
C4B—C5B—C6B | 121.6 (3) | C8D—C9D—C4D | 120.3 (3) |
C4B—C5B—H51B | 119.2 | C8D—C9D—H91D | 119.8 |
C6B—C5B—H51B | 119.2 | C4D—C9D—H91D | 119.8 |
C4B—C9B—C8B | 120.7 (3) | C7D—C8D—C9D | 120.5 (3) |
C4B—C9B—H91B | 119.7 | C7D—C8D—H81D | 119.8 |
C8B—C9B—H91B | 119.7 | C9D—C8D—H81D | 119.8 |
C6B—C7B—C8B | 119.4 (3) | C5D—C6D—C7D | 119.5 (3) |
C6B—C7B—H71B | 120.3 | C5D—C6D—H61D | 120.2 |
C8B—C7B—H71B | 120.3 | C7D—C6D—H61D | 120.2 |
C9B—C8B—C7B | 120.4 (3) | O1D—C1D—O2D | 126.3 (2) |
C9B—C8B—H81B | 119.8 | O1D—C1D—C2D | 115.2 (2) |
C7B—C8B—H81B | 119.8 | O2D—C1D—C2D | 118.5 (2) |
C7B—C6B—C5B | 119.7 (3) | C8D—C7D—C6D | 119.9 (3) |
C7B—C6B—H61B | 120.2 | C8D—C7D—H71D | 120.1 |
C5B—C6B—H61B | 120.2 | C6D—C7D—H71D | 120.1 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H11A···O2B | 0.91 | 1.99 | 2.840 (3) | 155 |
N1A—H12A···O1Ci | 0.91 | 1.79 | 2.695 (3) | 174 |
N1A—H13A···O2Cii | 0.91 | 2.06 | 2.950 (3) | 166 |
N1B—H11B···O1D | 0.91 | 1.80 | 2.707 (3) | 177 |
N1B—H12B···O2Diii | 0.91 | 1.99 | 2.883 (3) | 168 |
N1B—H13B···O2A | 0.91 | 2.00 | 2.854 (3) | 156 |
N1C—H11C···O2D | 0.91 | 1.98 | 2.839 (3) | 158 |
N1C—H12C···O1Aiv | 0.91 | 1.79 | 2.694 (3) | 176 |
N1C—H13C···O2A | 0.91 | 1.99 | 2.884 (3) | 168 |
N1D—H11D···O1Bv | 0.91 | 1.80 | 2.694 (3) | 167 |
N1D—H12D···O2Bvi | 0.91 | 2.07 | 2.963 (3) | 168 |
N1D—H13D···O2C | 0.91 | 1.98 | 2.829 (3) | 156 |
Symmetry codes: (i) x, y, z+1; (ii) x−1, y, z+1; (iii) x−1, y, z; (iv) x+1, y, z; (v) x+1, y, z−1; (vi) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C9H11NO2 |
Mr | 165.19 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 6.0010 (5), 30.8020 (17), 8.7980 (4) |
β (°) | 90.120 (4) |
V (Å3) | 1626.24 (17) |
Z | 8 |
Radiation type | Synchrotron, λ = 0.61995 Å |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.10 × 0.07 |
Data collection | |
Diffractometer | MD2M mini diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 45788, 12740, 10932 |
Rint | 0.064 |
(sin θ/λ)max (Å−1) | 0.820 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.064, 0.170, 1.15 |
No. of reflections | 12740 |
No. of parameters | 389 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.91, −0.75 |
Absolute structure | Flack x determined using 4805 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons and Flack (2004), Acta Cryst. A60, s61). |
Absolute structure parameter | 0.0 (4) |
Computer programs: MxCuBE (Gabadinho et al., 2010), XDS (Kabsch, 1993), SHELXS97 (Sheldrick, 2008), SHELXL2013 (Sheldrick, 2008), PLATON (Spek, 2003, 2009), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H11A···O2B | 0.91 | 1.99 | 2.840 (3) | 155 |
N1A—H12A···O1Ci | 0.91 | 1.79 | 2.695 (3) | 174 |
N1A—H13A···O2Cii | 0.91 | 2.06 | 2.950 (3) | 166 |
N1B—H11B···O1D | 0.91 | 1.80 | 2.707 (3) | 177 |
N1B—H12B···O2Diii | 0.91 | 1.99 | 2.883 (3) | 168 |
N1B—H13B···O2A | 0.91 | 2.00 | 2.854 (3) | 156 |
N1C—H11C···O2D | 0.91 | 1.98 | 2.839 (3) | 158 |
N1C—H12C···O1Aiv | 0.91 | 1.79 | 2.694 (3) | 176 |
N1C—H13C···O2A | 0.91 | 1.99 | 2.884 (3) | 168 |
N1D—H11D···O1Bv | 0.91 | 1.80 | 2.694 (3) | 167 |
N1D—H12D···O2Bvi | 0.91 | 2.07 | 2.963 (3) | 168 |
N1D—H13D···O2C | 0.91 | 1.98 | 2.829 (3) | 156 |
Symmetry codes: (i) x, y, z+1; (ii) x−1, y, z+1; (iii) x−1, y, z; (iv) x+1, y, z; (v) x+1, y, z−1; (vi) x, y, z−1. |