Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536803012327/ac6043sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536803012327/ac6043Isup2.hkl |
CCDC reference: 217439
The title compound was isolated from the stems of Coscinium fenestratum. Crystals were obtained by recrystallizing the ethyl acetate/dichloromethane crude extract from a solvent mixture of dichloromethane/methanol. M.p. 481–483 K. The 1H and 13C NMR results confirmed that the title compound is 8-oxotetrahydrothalifendine as previously reported (Pinho et al., 1992; Gentry et al., 1998).
The Friedel pairs were merged during the refinement. The absolute configuration could not be determined, thus an arbitrary chioce of enantiomers has been made. All H atoms were located from a difference Fourier map and both positional and isotropic displacement parameters were refined except for H14A; as the C14–H14A bond is too long (1.24 Å), it is restrained to a reasonable distance of 1.09 Å. The ranges of C–H and O–H bond lengths are 0.88 (4)–1.03 (3) and 0.88 (4) Å, respectively.
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SHELXTL (Bruker, 2000) and SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and MOLSCRIPT (Kraulis, 1991); software used to prepare material for publication: PLATON (Spek, 1990) and SHELXL97.
C19H17NO5 | Dx = 1.458 Mg m−3 |
Mr = 339.34 | Melting point: 481–483 K K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 1481 reflections |
a = 8.0217 (7) Å | θ = 2.5–20.4° |
b = 13.5313 (12) Å | µ = 0.11 mm−1 |
c = 14.2383 (12) Å | T = 295 K |
V = 1545.5 (2) Å3 | Rod, colorless |
Z = 4 | 0.16 × 0.11 × 0.09 mm |
F(000) = 712 |
Bruker SMART APEX CCD area-detector diffractometer | 2104 independent reflections |
Radiation source: fine-focus sealed tube | 1771 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
ω–scans | θmax = 28.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −10→10 |
Tmin = 0.986, Tmax = 0.991 | k = −13→17 |
9913 measured reflections | l = −17→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0546P)2 + 0.153P] where P = (Fo2 + 2Fc2)/3 |
2104 reflections | (Δ/σ)max = 0.001 |
294 parameters | Δρmax = 0.24 e Å−3 |
1 restraint | Δρmin = −0.33 e Å−3 |
C19H17NO5 | V = 1545.5 (2) Å3 |
Mr = 339.34 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.0217 (7) Å | µ = 0.11 mm−1 |
b = 13.5313 (12) Å | T = 295 K |
c = 14.2383 (12) Å | 0.16 × 0.11 × 0.09 mm |
Bruker SMART APEX CCD area-detector diffractometer | 2104 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1771 reflections with I > 2σ(I) |
Tmin = 0.986, Tmax = 0.991 | Rint = 0.041 |
9913 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 1 restraint |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.24 e Å−3 |
2104 reflections | Δρmin = −0.33 e Å−3 |
294 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.1012 (4) | 0.4201 (2) | 0.25512 (19) | 0.0366 (7) | |
C2 | −0.0828 (4) | 0.4013 (2) | 0.1609 (2) | 0.0401 (7) | |
C3 | 0.0009 (5) | 0.3188 (2) | 0.12944 (19) | 0.0409 (7) | |
C4 | 0.0693 (4) | 0.2518 (2) | 0.1894 (2) | 0.0427 (8) | |
C4A | 0.0529 (4) | 0.2691 (2) | 0.28624 (19) | 0.0339 (6) | |
C5 | 0.1155 (5) | 0.1950 (3) | 0.3559 (2) | 0.0450 (8) | |
C6 | 0.0087 (5) | 0.1959 (2) | 0.4430 (2) | 0.0381 (7) | |
N7 | 0.0080 (4) | 0.29493 (16) | 0.48346 (15) | 0.0328 (6) | |
C8 | 0.0408 (4) | 0.30775 (19) | 0.57583 (17) | 0.0285 (6) | |
C8A | 0.0432 (4) | 0.41180 (19) | 0.61218 (18) | 0.0290 (6) | |
C9 | 0.0277 (4) | 0.43288 (18) | 0.70804 (18) | 0.0295 (6) | |
C10 | 0.0348 (4) | 0.5311 (2) | 0.73873 (18) | 0.0349 (7) | |
C11 | 0.0627 (4) | 0.6058 (2) | 0.6755 (2) | 0.0410 (7) | |
C12 | 0.0776 (4) | 0.5851 (2) | 0.5808 (2) | 0.0416 (8) | |
C12A | 0.0649 (4) | 0.48938 (19) | 0.54857 (18) | 0.0319 (6) | |
C13 | 0.0741 (4) | 0.4653 (2) | 0.4449 (2) | 0.0352 (7) | |
C13A | −0.0398 (4) | 0.37858 (19) | 0.42215 (18) | 0.0296 (6) | |
C13B | −0.0291 (4) | 0.3525 (2) | 0.31851 (18) | 0.0315 (6) | |
C14 | −0.1097 (9) | 0.3956 (4) | 0.0064 (3) | 0.0820 (18) | |
C15 | 0.1564 (5) | 0.3299 (3) | 0.8167 (2) | 0.0476 (9) | |
O16 | −0.1411 (4) | 0.45540 (17) | 0.08607 (14) | 0.0568 (7) | |
O17 | −0.0007 (4) | 0.31739 (17) | 0.03245 (14) | 0.0600 (7) | |
O18 | 0.0706 (3) | 0.23673 (14) | 0.62793 (13) | 0.0401 (5) | |
O19 | 0.0021 (3) | 0.36075 (14) | 0.77491 (12) | 0.0356 (5) | |
O20 | 0.0131 (3) | 0.54781 (16) | 0.83272 (13) | 0.0437 (6) | |
H1 | −0.164 (4) | 0.478 (2) | 0.2751 (19) | 0.029 (7)* | |
H4 | 0.120 (4) | 0.197 (3) | 0.165 (2) | 0.040 (9)* | |
H5A | 0.229 (6) | 0.208 (3) | 0.372 (3) | 0.072 (13)* | |
H5B | 0.125 (5) | 0.134 (3) | 0.328 (2) | 0.064 (11)* | |
H6A | 0.054 (5) | 0.156 (3) | 0.493 (2) | 0.059 (11)* | |
H6B | −0.111 (4) | 0.176 (2) | 0.425 (2) | 0.038 (8)* | |
H11 | 0.081 (4) | 0.669 (2) | 0.693 (2) | 0.042 (9)* | |
H12 | 0.099 (5) | 0.633 (3) | 0.538 (2) | 0.051 (10)* | |
H13A | 0.044 (4) | 0.520 (2) | 0.4066 (18) | 0.030 (7)* | |
H13B | 0.189 (4) | 0.446 (2) | 0.4262 (19) | 0.030 (8)* | |
H13' | −0.154 (3) | 0.3986 (19) | 0.4376 (16) | 0.015 (6)* | |
H14A | −0.232 (10) | 0.362 (6) | −0.006 (6) | 0.24 (4)* | |
H14B | −0.077 (5) | 0.428 (3) | −0.044 (3) | 0.060 (11)* | |
H15A | 0.223 (5) | 0.294 (3) | 0.770 (3) | 0.072 (12)* | |
H15B | 0.214 (5) | 0.385 (3) | 0.847 (2) | 0.060 (11)* | |
H15C | 0.126 (6) | 0.282 (3) | 0.863 (3) | 0.080 (13)* | |
H20 | −0.012 (5) | 0.611 (3) | 0.835 (2) | 0.060 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0494 (19) | 0.0290 (15) | 0.0315 (14) | 0.0027 (14) | 0.0028 (13) | −0.0002 (12) |
C2 | 0.056 (2) | 0.0329 (16) | 0.0318 (14) | −0.0008 (15) | −0.0013 (14) | 0.0065 (12) |
C3 | 0.058 (2) | 0.0366 (16) | 0.0285 (13) | −0.0087 (16) | 0.0070 (14) | −0.0032 (12) |
C4 | 0.055 (2) | 0.0333 (16) | 0.0395 (16) | 0.0035 (16) | 0.0097 (15) | −0.0051 (13) |
C4A | 0.0383 (17) | 0.0300 (14) | 0.0332 (14) | 0.0008 (12) | 0.0018 (13) | −0.0024 (12) |
C5 | 0.062 (2) | 0.0404 (19) | 0.0323 (16) | 0.0168 (17) | −0.0020 (16) | −0.0045 (14) |
C6 | 0.059 (2) | 0.0228 (13) | 0.0322 (14) | −0.0002 (14) | −0.0062 (15) | 0.0002 (12) |
N7 | 0.0473 (15) | 0.0216 (11) | 0.0294 (11) | −0.0001 (11) | −0.0001 (11) | 0.0021 (9) |
C8 | 0.0363 (16) | 0.0239 (12) | 0.0253 (12) | −0.0014 (12) | 0.0039 (12) | 0.0019 (11) |
C8A | 0.0319 (16) | 0.0241 (12) | 0.0309 (13) | −0.0002 (12) | 0.0010 (11) | −0.0005 (10) |
C9 | 0.0321 (15) | 0.0251 (13) | 0.0314 (13) | 0.0001 (11) | 0.0012 (12) | 0.0020 (11) |
C10 | 0.0422 (18) | 0.0331 (15) | 0.0295 (13) | 0.0012 (14) | −0.0027 (13) | −0.0027 (12) |
C11 | 0.057 (2) | 0.0232 (15) | 0.0425 (17) | −0.0044 (15) | −0.0025 (15) | −0.0042 (12) |
C12 | 0.058 (2) | 0.0264 (14) | 0.0404 (16) | −0.0091 (14) | −0.0001 (16) | 0.0069 (13) |
C12A | 0.0397 (17) | 0.0258 (13) | 0.0303 (13) | −0.0042 (12) | 0.0030 (12) | 0.0004 (11) |
C13 | 0.049 (2) | 0.0281 (14) | 0.0281 (13) | −0.0057 (14) | 0.0043 (13) | 0.0051 (12) |
C13A | 0.0365 (17) | 0.0234 (13) | 0.0290 (13) | 0.0032 (12) | 0.0018 (12) | 0.0034 (11) |
C13B | 0.0383 (17) | 0.0285 (13) | 0.0276 (13) | −0.0017 (13) | 0.0021 (12) | 0.0020 (11) |
C14 | 0.157 (6) | 0.063 (3) | 0.0262 (18) | 0.028 (3) | 0.003 (2) | 0.0057 (18) |
C15 | 0.067 (2) | 0.0371 (19) | 0.0386 (18) | 0.0059 (17) | −0.0133 (17) | 0.0024 (15) |
O16 | 0.095 (2) | 0.0457 (13) | 0.0295 (11) | 0.0067 (14) | −0.0076 (13) | 0.0022 (10) |
O17 | 0.102 (2) | 0.0511 (14) | 0.0267 (11) | 0.0040 (16) | 0.0055 (12) | −0.0022 (9) |
O18 | 0.0638 (15) | 0.0235 (10) | 0.0330 (10) | 0.0026 (10) | −0.0043 (10) | 0.0031 (8) |
O19 | 0.0479 (12) | 0.0280 (10) | 0.0307 (9) | −0.0007 (10) | −0.0013 (10) | 0.0051 (8) |
O20 | 0.0716 (16) | 0.0294 (11) | 0.0303 (10) | 0.0066 (12) | −0.0016 (11) | −0.0045 (9) |
C1—C2 | 1.374 (4) | C9—O19 | 1.379 (3) |
C1—C13B | 1.408 (4) | C9—C10 | 1.400 (4) |
C1—H1 | 0.98 (3) | C10—O20 | 1.368 (3) |
C2—O16 | 1.375 (4) | C10—C11 | 1.372 (4) |
C2—C3 | 1.377 (4) | C11—C12 | 1.383 (4) |
C3—C4 | 1.361 (5) | C11—H11 | 0.91 (3) |
C3—O17 | 1.381 (3) | C12—C12A | 1.377 (4) |
C4—C4A | 1.404 (4) | C12—H12 | 0.90 (3) |
C4—H4 | 0.91 (3) | C12A—C13 | 1.514 (4) |
C4A—C13B | 1.385 (4) | C13—C13A | 1.522 (4) |
C4A—C5 | 1.497 (4) | C13—H13A | 0.95 (3) |
C5—C6 | 1.508 (5) | C13—H13B | 0.99 (3) |
C5—H5A | 0.95 (5) | C13A—C13B | 1.519 (4) |
C5—H5B | 0.91 (4) | C13A—H13' | 0.98 (3) |
C6—N7 | 1.459 (3) | C14—O16 | 1.415 (5) |
C6—H6A | 0.96 (4) | C14—O17 | 1.422 (5) |
C6—H6B | 1.03 (3) | C14—H14A | 1.09 (7) |
N7—C8 | 1.352 (3) | C14—H14B | 0.88 (4) |
N7—C13A | 1.480 (3) | C15—O19 | 1.436 (4) |
C8—O18 | 1.237 (3) | C15—H15A | 0.98 (4) |
C8—C8A | 1.500 (3) | C15—H15B | 0.98 (4) |
C8A—C12A | 1.397 (4) | C15—H15C | 0.96 (4) |
C8A—C9 | 1.400 (4) | O20—H20 | 0.88 (4) |
C2—C1—C13B | 117.5 (3) | C11—C10—C9 | 120.1 (2) |
C2—C1—H1 | 119.3 (17) | C10—C11—C12 | 120.3 (3) |
C13B—C1—H1 | 123.2 (16) | C10—C11—H11 | 123 (2) |
C1—C2—O16 | 128.4 (3) | C12—C11—H11 | 117 (2) |
C1—C2—C3 | 121.3 (3) | C12A—C12—C11 | 120.6 (3) |
O16—C2—C3 | 110.2 (2) | C12A—C12—H12 | 117 (2) |
C4—C3—C2 | 122.2 (3) | C11—C12—H12 | 122 (2) |
C4—C3—O17 | 128.5 (3) | C12—C12A—C8A | 120.0 (3) |
C2—C3—O17 | 109.4 (3) | C12—C12A—C13 | 121.6 (3) |
C3—C4—C4A | 117.8 (3) | C8A—C12A—C13 | 118.5 (2) |
C3—C4—H4 | 118.7 (19) | C12A—C13—C13A | 110.1 (2) |
C4A—C4—H4 | 123.4 (19) | C12A—C13—H13A | 112.4 (16) |
C13B—C4A—C4 | 120.4 (3) | C13A—C13—H13A | 108.8 (18) |
C13B—C4A—C5 | 119.1 (2) | C12A—C13—H13B | 111.3 (16) |
C4—C4A—C5 | 120.4 (3) | C13A—C13—H13B | 107.4 (16) |
C4A—C5—C6 | 110.4 (3) | H13A—C13—H13B | 107 (2) |
C4A—C5—H5A | 111 (2) | N7—C13A—C13B | 112.4 (2) |
C6—C5—H5A | 110 (2) | N7—C13A—C13 | 108.0 (2) |
C4A—C5—H5B | 110 (2) | C13B—C13A—C13 | 110.6 (2) |
C6—C5—H5B | 114 (2) | N7—C13A—H13' | 108.7 (15) |
H5A—C5—H5B | 101 (3) | C13B—C13A—H13' | 109.5 (14) |
N7—C6—C5 | 109.5 (3) | C13—C13A—H13' | 107.6 (15) |
N7—C6—H6A | 103 (2) | C4A—C13B—C1 | 120.7 (2) |
C5—C6—H6A | 113 (2) | C4A—C13B—C13A | 122.5 (2) |
N7—C6—H6B | 109.6 (17) | C1—C13B—C13A | 116.7 (3) |
C5—C6—H6B | 109.0 (17) | O16—C14—O17 | 109.0 (3) |
H6A—C6—H6B | 113 (3) | O16—C14—H14A | 102 (4) |
C8—N7—C6 | 120.1 (2) | O17—C14—H14A | 107 (5) |
C8—N7—C13A | 121.7 (2) | O16—C14—H14B | 115 (2) |
C6—N7—C13A | 118.1 (2) | O17—C14—H14B | 114 (3) |
O18—C8—N7 | 121.4 (2) | H14A—C14—H14B | 110 (5) |
O18—C8—C8A | 121.3 (2) | O19—C15—H15A | 110 (2) |
N7—C8—C8A | 117.3 (2) | O19—C15—H15B | 111 (2) |
C12A—C8A—C9 | 119.3 (2) | H15A—C15—H15B | 115 (3) |
C12A—C8A—C8 | 118.9 (2) | O19—C15—H15C | 105 (3) |
C9—C8A—C8 | 121.8 (2) | H15A—C15—H15C | 105 (3) |
O19—C9—C8A | 122.8 (2) | H15B—C15—H15C | 109 (3) |
O19—C9—C10 | 117.5 (2) | C2—O16—C14 | 104.8 (3) |
C8A—C9—C10 | 119.6 (2) | C3—O17—C14 | 104.8 (3) |
O20—C10—C11 | 122.7 (3) | C9—O19—C15 | 111.3 (2) |
O20—C10—C9 | 117.2 (3) | C10—O20—H20 | 103 (2) |
C13B—C1—C2—O16 | 179.9 (3) | C10—C11—C12—C12A | −0.1 (5) |
C13B—C1—C2—C3 | 0.9 (5) | C11—C12—C12A—C8A | −2.5 (5) |
C1—C2—C3—C4 | 0.0 (5) | C11—C12—C12A—C13 | 177.6 (3) |
O16—C2—C3—C4 | −179.1 (3) | C9—C8A—C12A—C12 | 2.6 (5) |
C1—C2—C3—O17 | 179.3 (3) | C8—C8A—C12A—C12 | −176.1 (3) |
O16—C2—C3—O17 | 0.1 (4) | C9—C8A—C12A—C13 | −177.5 (3) |
C2—C3—C4—C4A | −0.2 (5) | C8—C8A—C12A—C13 | 3.8 (4) |
O17—C3—C4—C4A | −179.3 (3) | C12—C12A—C13—C13A | −145.6 (3) |
C3—C4—C4A—C13B | −0.7 (5) | C8A—C12A—C13—C13A | 34.5 (4) |
C3—C4—C4A—C5 | 176.0 (3) | C8—N7—C13A—C13B | 165.9 (3) |
C13B—C4A—C5—C6 | 28.7 (4) | C6—N7—C13A—C13B | −18.0 (4) |
C4—C4A—C5—C6 | −148.1 (3) | C8—N7—C13A—C13 | 43.7 (4) |
C4A—C5—C6—N7 | −57.7 (4) | C6—N7—C13A—C13 | −140.2 (3) |
C5—C6—N7—C8 | −129.9 (3) | C12A—C13—C13A—N7 | −55.6 (3) |
C5—C6—N7—C13A | 54.0 (4) | C12A—C13—C13A—C13B | −179.0 (2) |
C6—N7—C8—O18 | −0.5 (5) | C4—C4A—C13B—C1 | 1.7 (5) |
C13A—N7—C8—O18 | 175.5 (3) | C5—C4A—C13B—C1 | −175.0 (3) |
C6—N7—C8—C8A | 178.2 (3) | C4—C4A—C13B—C13A | −175.5 (3) |
C13A—N7—C8—C8A | −5.8 (4) | C5—C4A—C13B—C13A | 7.7 (4) |
O18—C8—C8A—C12A | 158.7 (3) | C2—C1—C13B—C4A | −1.8 (5) |
N7—C8—C8A—C12A | −20.0 (4) | C2—C1—C13B—C13A | 175.6 (3) |
O18—C8—C8A—C9 | −20.0 (5) | N7—C13A—C13B—C4A | −14.2 (4) |
N7—C8—C8A—C9 | 161.3 (3) | C13—C13A—C13B—C4A | 106.6 (3) |
C12A—C8A—C9—O19 | 178.4 (3) | N7—C13A—C13B—C1 | 168.4 (3) |
C8—C8A—C9—O19 | −2.9 (5) | C13—C13A—C13B—C1 | −70.8 (4) |
C12A—C8A—C9—C10 | −0.2 (5) | C1—C2—O16—C14 | −171.3 (4) |
C8—C8A—C9—C10 | 178.4 (3) | C3—C2—O16—C14 | 7.8 (5) |
O19—C9—C10—O20 | −1.0 (4) | O17—C14—O16—C2 | −12.8 (5) |
C8A—C9—C10—O20 | 177.7 (3) | C4—C3—O17—C14 | 171.2 (4) |
O19—C9—C10—C11 | 179.0 (3) | C2—C3—O17—C14 | −8.0 (5) |
C8A—C9—C10—C11 | −2.3 (5) | O16—C14—O17—C3 | 12.9 (6) |
O20—C10—C11—C12 | −177.6 (3) | C8A—C9—O19—C15 | 95.2 (3) |
C9—C10—C11—C12 | 2.5 (5) | C10—C9—O19—C15 | −86.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O20—H20···O18i | 0.88 (4) | 1.84 (4) | 2.702 (3) | 165 (3) |
C5—H5B···O16ii | 0.91 (4) | 2.72 (4) | 3.352 (4) | 128 (3) |
C14—H14B···O19iii | 0.88 (4) | 2.81 (4) | 3.449 (4) | 130 (3) |
C14—H14B···O20iii | 0.88 (4) | 2.50 (4) | 3.366 (5) | 170 (3) |
C15—H15C···O17iv | 0.96 (4) | 2.66 (4) | 3.325 (4) | 127 (3) |
Symmetry codes: (i) −x, y+1/2, −z+3/2; (ii) −x, y−1/2, −z+1/2; (iii) x, y, z−1; (iv) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H17NO5 |
Mr | 339.34 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 295 |
a, b, c (Å) | 8.0217 (7), 13.5313 (12), 14.2383 (12) |
V (Å3) | 1545.5 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.16 × 0.11 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.986, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9913, 2104, 1771 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.113, 1.12 |
No. of reflections | 2104 |
No. of parameters | 294 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.24, −0.33 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXTL (Bruker, 2000) and SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEPIII (Burnett & Johnson, 1996) and MOLSCRIPT (Kraulis, 1991), PLATON (Spek, 1990) and SHELXL97.
C2—O16 | 1.375 (4) | C9—O19 | 1.379 (3) |
C3—O17 | 1.381 (3) | C10—O20 | 1.368 (3) |
C6—N7 | 1.459 (3) | C14—O16 | 1.415 (5) |
N7—C8 | 1.352 (3) | C14—O17 | 1.422 (5) |
N7—C13A | 1.480 (3) | C15—O19 | 1.436 (4) |
C8—O18 | 1.237 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O20—H20···O18i | 0.88 (4) | 1.84 (4) | 2.702 (3) | 165 (3) |
C5—H5B···O16ii | 0.91 (4) | 2.72 (4) | 3.352 (4) | 128 (3) |
C14—H14B···O19iii | 0.88 (4) | 2.81 (4) | 3.449 (4) | 130 (3) |
C14—H14B···O20iii | 0.88 (4) | 2.50 (4) | 3.366 (5) | 170 (3) |
C15—H15C···O17iv | 0.96 (4) | 2.66 (4) | 3.325 (4) | 127 (3) |
Symmetry codes: (i) −x, y+1/2, −z+3/2; (ii) −x, y−1/2, −z+1/2; (iii) x, y, z−1; (iv) x, y, z+1. |
Protoberberine alkaloids found in many plants exhibit pharmacological activities (Schmeller & Wink, 1998; Simeon et al., 1989). The crystal structures of berberine salts [chloride, bromide, iodide, sulfate, hydrogen sulfate, azide, thiocyanate (Abadi et al., 1984; Kariuki & Jones, 1995; Man et al., 2001], jatrorrhizine (Ghosh et al., 1993), 8-cyano-8H-berberine (Man et al., 2001), isocorypalmine (Ribar et al., 1992), canadine (Sakai & Taira, 1987) and capaurine (Shimanouchi et al., 1969) have been reported. In the present study, the structure of 8-oxotetrahydrothalifendine (10-hydroxy-9-methoxy-5,6,13,13a-tetrahydro -[1,3]dioxolo[4,5-g] isoquino[3,2-a]isoquinolin-8-one), (I), has been investigated.
The molecular structure of (I), with the atomic numbering scheme, is shown in Fig. 1. The dihydropyrido moiety adopts an intermediate form between envelope and screw boat conformations, with puckering parameters Q, θ and ϕ (Cremer & Pople, 1975) of 0.511 Å, 116.1 and 250.8°, respectively. The pyrido moiety exhibits an intermediate form between envelope and twist conformations, with the corresponding values of 0.513 Å, 67.3 and 276.4°, respectively. The dioxolane ring is in an envelope form, with Q of 0.119 Å and ϕ of 143.4°. The dihedral angle between the least-squares planes through the two benzo rings is 37.16°, which is comparable to those of isocorypalmine (33.81°; Ribar et al., 1992) and of 8-cyano-8H-berberine (37.69°; Man et al., 2001). This is much higher than those of the other above-mentioned berberine structures (range 4.24–14.96°). The methoxy group at C9 is nearly perpendicular to the benzo ring, with a torsion angle C10–C9–O19–C15 of −86.1 (3)°.
In the crystal structure, the molecules translated by a unit along the c axis are linked by weak C14–H14B···O19iii, C14–H14B···O20iii [symmetry code: (iii) x, y, z − 1] and C15–H15C···O17iv [symmetry code: (iv) x, y, 1 + z] interactions to form a molecular chain (Fig. 2 and Table 2). Along the a axis, adjacent chains related by screw symmetry are connected by a strong O20–H20···O18i [symmetry code: (i) −x, 1/2 + y, 3/2 − z] and a weak C5–H5B···O16ii [symmetry code: (ii) −x, y − 1/2, 1/2 − z] hydrogen bond to form layers (Fig. 2) parallel to the bc plane.