Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808027360/at2611sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536808027360/at2611Isup2.hkl |
CCDC reference: 702591
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.019 Å
- R factor = 0.083
- wR factor = 0.229
- Data-to-parameter ratio = 12.6
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT341_ALERT_3_B Low Bond Precision on C-C Bonds (x 1000) Ang ... 19
Alert level C ABSTM02_ALERT_3_C The ratio of Tmax/Tmin expected RT(exp) is > 1.10 Absorption corrections should be applied. Tmin and Tmax expected: 0.646 0.770 RT(exp) = 1.192 PLAT057_ALERT_3_C Correction for Absorption Required RT(exp) ... 1.19 PLAT034_ALERT_1_C No Flack Parameter Given. Z .GT. Si, NonCentro . ? PLAT180_ALERT_4_C Check Cell Rounding: # of Values Ending with 0 = 4
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 24.99 From the CIF: _reflns_number_total 1822 Count of symmetry unique reflns 1025 Completeness (_total/calc) 177.76% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 797 Fraction of Friedel pairs measured 0.778 Are heavy atom types Z>Si present yes PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A mixture of 2-nitrobenzaldehyde (0.02 mol) and 4-methoxyaniline (0.02 mol) was stirred with ethanol (50 mL) at 377 K for 5 h, affording the title compound (4.33 g, yield 84.5%). Single crystals suitable for X-ray measurements were obtained by recrystallization from acetone at room temperature.
H atoms were positioned geometrically and allowed to ride on their parent atoms, with O—H and C—H distances of 0.82 and 0.93 Å, respectively, and with Uiso(H) = 1.2 or 1.5Ueq of the parent atoms.
The recent growing interest in Schiff bases is also due to their ability to form intramolecular hydrogen bonds by electron coupling between acid–base centers (Rozwadowski et al., 1999). The part of our research is to find Schiff base with higher biological activity, we synthesized the title compound (I) and report its crystal structure here.
In the crystal structure of compound (I) (Fig. 1), the dihedral angle between the benzene rings (C1–C6) and (C7–C12) was 4.6 (2)°. The C═N bond length [1.273 (1) Å] is in agreement with that observed before (Jian et al., 2006). There are intramolecular O—H···N hydrogen-bond interactions to stabilize the crystal structure (Table 1, Fig. 2).
For related literature, see: Jian et al. (2006); Rozwadowski et al. (1999).
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C13H10BrNO | F(000) = 276.0 |
Mr = 276.13 | Dx = 1.676 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 1666 reflections |
a = 3.9700 (8) Å | θ = 1.6–25.0° |
b = 10.540 (2) Å | µ = 3.73 mm−1 |
c = 13.200 (3) Å | T = 293 K |
β = 98.00 (3)° | Bar, yellow |
V = 546.96 (19) Å3 | 0.12 × 0.10 × 0.07 mm |
Z = 2 |
Bruker SMART CCD area-detector diffractometer | 1666 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.032 |
Graphite monochromator | θmax = 25.0°, θmin = 1.6° |
φ and ω scans | h = −4→4 |
2736 measured reflections | k = −12→12 |
1822 independent reflections | l = −12→15 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.082 | H-atom parameters constrained |
wR(F2) = 0.229 | w = 1/[σ2(Fo2) + (0.1154P)2 + 2.8393P] where P = (Fo2 + 2Fc2)/3 |
S = 1.13 | (Δ/σ)max < 0.001 |
1822 reflections | Δρmax = 1.43 e Å−3 |
145 parameters | Δρmin = −1.17 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 787 Freidel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.1 (4) |
C13H10BrNO | V = 546.96 (19) Å3 |
Mr = 276.13 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 3.9700 (8) Å | µ = 3.73 mm−1 |
b = 10.540 (2) Å | T = 293 K |
c = 13.200 (3) Å | 0.12 × 0.10 × 0.07 mm |
β = 98.00 (3)° |
Bruker SMART CCD area-detector diffractometer | 1666 reflections with I > 2σ(I) |
2736 measured reflections | Rint = 0.032 |
1822 independent reflections |
R[F2 > 2σ(F2)] = 0.082 | H-atom parameters constrained |
wR(F2) = 0.229 | Δρmax = 1.43 e Å−3 |
S = 1.13 | Δρmin = −1.17 e Å−3 |
1822 reflections | Absolute structure: Flack (1983), 787 Freidel pairs |
145 parameters | Absolute structure parameter: 0.1 (4) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.4943 (3) | 0.6144 (2) | 0.53030 (8) | 0.0544 (5) | |
N1 | 0.643 (3) | 0.4449 (9) | 0.9014 (8) | 0.041 (2) | |
C4 | 0.538 (4) | 0.5109 (12) | 0.7289 (10) | 0.046 (3) | |
H4A | 0.6652 | 0.5830 | 0.7485 | 0.055* | |
C10 | 0.793 (3) | 0.3864 (10) | 1.0766 (9) | 0.036 (3) | |
C3 | 0.402 (4) | 0.4950 (13) | 0.6277 (11) | 0.049 (3) | |
C11 | 0.800 (4) | 0.2937 (12) | 1.1480 (10) | 0.043 (3) | |
H11A | 0.7186 | 0.2137 | 1.1274 | 0.052* | |
C5 | 0.487 (3) | 0.4229 (12) | 0.8000 (10) | 0.043 (3) | |
C8 | 1.128 (4) | 0.5145 (14) | 1.2004 (12) | 0.057 (4) | |
H8A | 1.2470 | 0.5889 | 1.2187 | 0.068* | |
C12 | 0.918 (4) | 0.3124 (13) | 1.2476 (10) | 0.052 (4) | |
H12A | 0.8763 | 0.2550 | 1.2978 | 0.062* | |
C13 | 0.644 (4) | 0.3630 (11) | 0.9723 (11) | 0.041 (3) | |
H13A | 0.5431 | 0.2846 | 0.9561 | 0.050* | |
C9 | 0.978 (4) | 0.4994 (12) | 1.1041 (10) | 0.045 (3) | |
C7 | 1.110 (4) | 0.4238 (15) | 1.2716 (13) | 0.060 (4) | |
H7A | 1.2254 | 0.4348 | 1.3373 | 0.072* | |
O1 | 0.995 (3) | 0.5906 (16) | 1.0355 (8) | 0.081 (6) | |
H1 | 0.8925 | 0.5681 | 0.9801 | 0.121* | |
C6 | 0.304 (3) | 0.3157 (12) | 0.7675 (13) | 0.050 (4) | |
H6A | 0.2798 | 0.2530 | 0.8157 | 0.060* | |
C2 | 0.216 (4) | 0.3883 (13) | 0.5982 (12) | 0.049 (3) | |
H2A | 0.1275 | 0.3769 | 0.5298 | 0.059* | |
C1 | 0.157 (5) | 0.2960 (13) | 0.6708 (11) | 0.054 (4) | |
H1B | 0.0231 | 0.2250 | 0.6527 | 0.065* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0649 (8) | 0.0635 (8) | 0.0338 (6) | −0.0095 (9) | 0.0028 (5) | 0.0168 (7) |
N1 | 0.053 (6) | 0.034 (5) | 0.034 (5) | −0.002 (4) | 0.001 (5) | −0.001 (4) |
C4 | 0.060 (8) | 0.041 (7) | 0.035 (7) | 0.005 (6) | −0.002 (6) | 0.001 (5) |
C10 | 0.042 (7) | 0.035 (6) | 0.026 (6) | 0.004 (5) | −0.009 (5) | −0.007 (5) |
C3 | 0.053 (8) | 0.053 (8) | 0.040 (7) | 0.006 (6) | 0.000 (6) | −0.002 (6) |
C11 | 0.052 (8) | 0.045 (7) | 0.035 (7) | 0.015 (6) | 0.009 (6) | 0.002 (6) |
C5 | 0.039 (7) | 0.049 (7) | 0.038 (7) | 0.013 (6) | −0.002 (5) | −0.002 (5) |
C8 | 0.061 (9) | 0.043 (7) | 0.060 (9) | −0.009 (6) | −0.015 (7) | −0.003 (6) |
C12 | 0.073 (10) | 0.045 (7) | 0.034 (7) | 0.001 (7) | −0.007 (6) | 0.013 (6) |
C13 | 0.060 (8) | 0.028 (6) | 0.034 (7) | 0.004 (5) | 0.000 (6) | 0.000 (4) |
C9 | 0.056 (8) | 0.039 (6) | 0.041 (7) | 0.007 (6) | 0.003 (6) | 0.003 (6) |
C7 | 0.052 (9) | 0.066 (9) | 0.060 (9) | 0.002 (7) | −0.001 (7) | −0.005 (7) |
O1 | 0.096 (8) | 0.077 (16) | 0.065 (7) | −0.043 (8) | −0.005 (6) | −0.004 (7) |
C6 | 0.035 (7) | 0.032 (6) | 0.079 (10) | −0.009 (5) | −0.002 (7) | 0.004 (6) |
C2 | 0.039 (7) | 0.059 (9) | 0.049 (8) | 0.003 (6) | 0.006 (6) | −0.010 (7) |
C1 | 0.084 (11) | 0.043 (8) | 0.037 (7) | −0.011 (7) | 0.014 (7) | −0.013 (6) |
Br1—C3 | 1.872 (15) | C8—C7 | 1.35 (2) |
N1—C13 | 1.273 (17) | C8—H8A | 0.9300 |
N1—C5 | 1.414 (16) | C12—C7 | 1.41 (2) |
C4—C5 | 1.354 (19) | C12—H12A | 0.9300 |
C4—C3 | 1.379 (19) | C13—H13A | 0.9300 |
C4—H4A | 0.9300 | C9—O1 | 1.328 (19) |
C10—C11 | 1.355 (18) | C7—H7A | 0.9300 |
C10—C9 | 1.420 (18) | O1—H1 | 0.8200 |
C10—C13 | 1.443 (18) | C6—C1 | 1.34 (2) |
C3—C2 | 1.37 (2) | C6—H6A | 0.9300 |
C11—C12 | 1.348 (19) | C2—C1 | 1.41 (2) |
C11—H11A | 0.9300 | C2—H2A | 0.9300 |
C5—C6 | 1.381 (18) | C1—H1B | 0.9300 |
C8—C9 | 1.34 (2) | ||
C13—N1—C5 | 122.7 (11) | C7—C12—H12A | 121.8 |
C5—C4—C3 | 120.8 (13) | N1—C13—C10 | 123.0 (11) |
C5—C4—H4A | 119.6 | N1—C13—H13A | 118.5 |
C3—C4—H4A | 119.6 | C10—C13—H13A | 118.5 |
C11—C10—C9 | 117.9 (11) | O1—C9—C8 | 120.3 (13) |
C11—C10—C13 | 120.4 (11) | O1—C9—C10 | 120.4 (11) |
C9—C10—C13 | 121.1 (11) | C8—C9—C10 | 119.3 (12) |
C2—C3—C4 | 119.8 (14) | C8—C7—C12 | 120.8 (14) |
C2—C3—Br1 | 120.4 (11) | C8—C7—H7A | 119.6 |
C4—C3—Br1 | 119.7 (11) | C12—C7—H7A | 119.6 |
C12—C11—C10 | 122.9 (13) | C9—O1—H1 | 109.5 |
C12—C11—H11A | 118.6 | C1—C6—C5 | 124.1 (13) |
C10—C11—H11A | 118.6 | C1—C6—H6A | 117.9 |
C4—C5—C6 | 117.9 (13) | C5—C6—H6A | 117.9 |
C4—C5—N1 | 117.2 (12) | C3—C2—C1 | 120.5 (14) |
C6—C5—N1 | 124.8 (13) | C3—C2—H2A | 119.8 |
C9—C8—C7 | 121.2 (14) | C1—C2—H2A | 119.8 |
C9—C8—H8A | 119.4 | C6—C1—C2 | 116.7 (13) |
C7—C8—H8A | 119.4 | C6—C1—H1B | 121.6 |
C11—C12—C7 | 116.5 (14) | C2—C1—H1B | 121.6 |
C11—C12—H12A | 121.8 |
Experimental details
Crystal data | |
Chemical formula | C13H10BrNO |
Mr | 276.13 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 3.9700 (8), 10.540 (2), 13.200 (3) |
β (°) | 98.00 (3) |
V (Å3) | 546.96 (19) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.73 |
Crystal size (mm) | 0.12 × 0.10 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2736, 1822, 1666 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.082, 0.229, 1.13 |
No. of reflections | 1822 |
No. of parameters | 145 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.43, −1.17 |
Absolute structure | Flack (1983), 787 Freidel pairs |
Absolute structure parameter | 0.1 (4) |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
The recent growing interest in Schiff bases is also due to their ability to form intramolecular hydrogen bonds by electron coupling between acid–base centers (Rozwadowski et al., 1999). The part of our research is to find Schiff base with higher biological activity, we synthesized the title compound (I) and report its crystal structure here.
In the crystal structure of compound (I) (Fig. 1), the dihedral angle between the benzene rings (C1–C6) and (C7–C12) was 4.6 (2)°. The C═N bond length [1.273 (1) Å] is in agreement with that observed before (Jian et al., 2006). There are intramolecular O—H···N hydrogen-bond interactions to stabilize the crystal structure (Table 1, Fig. 2).