Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680801790X/bh2172sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680801790X/bh2172Isup2.hkl |
CCDC reference: 700502
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.002 Å
- R factor = 0.037
- wR factor = 0.112
- Data-to-parameter ratio = 16.3
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.97 PLAT414_ALERT_2_C Short Intra D-H..H-X H7 .. H13X .. 1.92 Ang. PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2 Cl
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A stock solution of DIPA was made in 2-propanol (85 mg, 2 ml). To a crystallizer vessel, 0.43 ml of stock solution was added with 1 equivalent of concentrated hydrochloric acid. For salt formation participation we gradually added 6 ml of methyl t-butyl ether, then the sample was purged with dry nitrogen for evaporation until dryness, allowed to evaporate over 24 h mark. A crystal of the title salt was removed from the crystallizer vessel and mounted on a MiTeGen loop with Paratone-N oil.
H atoms bonded to C atoms were placed in idealized positions and refined using a riding model with C—H = 0.93 Å for Csp2—H, 0.96 Å for CH3, and 0.98 Å for CH. Uiso(H) values were fixed to 0.08 Å2. H atoms bound to N3 were located in a difference maps and their positions and isotropic displacement parameters were refined freely.
Data collection: SMART (Bruker, 2006; cell refinement: SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C12H20N+·Cl− | F(000) = 928 |
Mr = 213.74 | Dx = 1.150 Mg m−3 |
Orthorhombic, Pbcn | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -P 2n 2ab | Cell parameters from 9259 reflections |
a = 13.0390 (3) Å | θ = 4.0–70.8° |
b = 21.0436 (4) Å | µ = 2.43 mm−1 |
c = 8.9968 (2) Å | T = 173 K |
V = 2468.61 (9) Å3 | Prism, colourless |
Z = 8 | 0.36 × 0.23 × 0.21 mm |
Bruker SMART APEXII CCD diffractometer | 2343 independent reflections |
Radiation source: Rotating Anode | 2248 reflections with I > 2σ(I) |
Montel Multilayer Optics monochromator | Rint = 0.028 |
ϕ and ω scans | θmax = 71.7°, θmin = 4.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | h = −15→15 |
Tmin = 0.451, Tmax = 0.597 | k = −25→20 |
23541 measured reflections | l = −10→9 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0758P)2 + 1.0624P] where P = (Fo2 + 2Fc2)/3 |
2343 reflections | (Δ/σ)max = 0.029 |
144 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C12H20N+·Cl− | V = 2468.61 (9) Å3 |
Mr = 213.74 | Z = 8 |
Orthorhombic, Pbcn | Cu Kα radiation |
a = 13.0390 (3) Å | µ = 2.43 mm−1 |
b = 21.0436 (4) Å | T = 173 K |
c = 8.9968 (2) Å | 0.36 × 0.23 × 0.21 mm |
Bruker SMART APEXII CCD diffractometer | 2343 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | 2248 reflections with I > 2σ(I) |
Tmin = 0.451, Tmax = 0.597 | Rint = 0.028 |
23541 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.112 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.35 e Å−3 |
2343 reflections | Δρmin = −0.21 e Å−3 |
144 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.79245 (10) | 0.88741 (6) | 0.98360 (14) | 0.0207 (3) | |
C2 | 0.77502 (10) | 0.84000 (6) | 1.08919 (15) | 0.0238 (3) | |
C3 | 0.67345 (11) | 0.82064 (6) | 1.11109 (16) | 0.0276 (3) | |
H3 | 0.6592 | 0.7891 | 1.1806 | 0.080* | |
C4 | 0.59411 (11) | 0.84748 (7) | 1.03134 (17) | 0.0296 (3) | |
H4 | 0.5271 | 0.8341 | 1.0476 | 0.080* | |
C5 | 0.61414 (10) | 0.89426 (7) | 0.92708 (16) | 0.0276 (3) | |
H5 | 0.5601 | 0.9119 | 0.8738 | 0.080* | |
C6 | 0.71389 (11) | 0.91548 (6) | 0.90040 (15) | 0.0229 (3) | |
C7 | 0.73500 (11) | 0.96575 (6) | 0.78298 (16) | 0.0250 (3) | |
H7 | 0.7931 | 0.9913 | 0.8179 | 0.080* | |
C8 | 0.64526 (13) | 1.01091 (8) | 0.75817 (17) | 0.0356 (4) | |
H8A | 0.5916 | 0.9891 | 0.7059 | 0.080* | |
H8B | 0.6678 | 1.0467 | 0.7005 | 0.080* | |
H8C | 0.6199 | 1.0254 | 0.8524 | 0.080* | |
C9 | 0.76786 (13) | 0.93367 (8) | 0.63763 (16) | 0.0357 (4) | |
H9A | 0.8242 | 0.9054 | 0.6568 | 0.080* | |
H9B | 0.7887 | 0.9655 | 0.5674 | 0.080* | |
H9C | 0.7113 | 0.9100 | 0.5977 | 0.080* | |
C10 | 0.85921 (11) | 0.80846 (6) | 1.17924 (16) | 0.0276 (3) | |
H10 | 0.9249 | 0.8271 | 1.1493 | 0.080* | |
C11 | 0.84443 (14) | 0.82083 (9) | 1.34518 (18) | 0.0418 (4) | |
H11A | 0.8456 | 0.8658 | 1.3635 | 0.080* | |
H11B | 0.8987 | 0.8008 | 1.3999 | 0.080* | |
H11C | 0.7797 | 0.8037 | 1.3764 | 0.080* | |
C12 | 0.86270 (15) | 0.73722 (8) | 1.1448 (2) | 0.0491 (5) | |
H12A | 0.7992 | 0.7179 | 1.1742 | 0.080* | |
H12B | 0.9182 | 0.7180 | 1.1985 | 0.080* | |
H12C | 0.8729 | 0.7311 | 1.0401 | 0.080* | |
N13 | 0.89957 (8) | 0.90795 (6) | 0.95727 (13) | 0.0218 (3) | |
H13X | 0.9045 (14) | 0.9424 (9) | 0.899 (2) | 0.034 (5)* | |
H13Y | 0.9357 (15) | 0.8761 (9) | 0.908 (2) | 0.036 (4)* | |
H13Z | 0.9318 (14) | 0.9187 (8) | 1.045 (2) | 0.030 (4)* | |
Cl1X | 1.0000 | 0.97357 (2) | 1.2500 | 0.02472 (17) | |
Cl1Y | 1.0000 | 0.80980 (2) | 0.7500 | 0.03006 (18) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0213 (6) | 0.0208 (6) | 0.0200 (6) | −0.0023 (4) | 0.0011 (5) | −0.0029 (5) |
C2 | 0.0270 (7) | 0.0224 (6) | 0.0221 (7) | −0.0008 (5) | 0.0012 (5) | −0.0014 (5) |
C3 | 0.0306 (7) | 0.0243 (6) | 0.0279 (7) | −0.0061 (5) | 0.0033 (6) | 0.0016 (5) |
C4 | 0.0244 (7) | 0.0315 (7) | 0.0329 (8) | −0.0085 (5) | 0.0015 (6) | −0.0022 (6) |
C5 | 0.0238 (7) | 0.0307 (7) | 0.0282 (7) | −0.0025 (5) | −0.0039 (5) | −0.0015 (6) |
C6 | 0.0255 (7) | 0.0229 (6) | 0.0204 (7) | −0.0018 (5) | −0.0013 (5) | −0.0023 (5) |
C7 | 0.0247 (7) | 0.0267 (7) | 0.0237 (6) | −0.0012 (5) | −0.0028 (5) | 0.0032 (5) |
C8 | 0.0318 (8) | 0.0357 (8) | 0.0392 (9) | 0.0041 (7) | −0.0018 (6) | 0.0106 (6) |
C9 | 0.0462 (9) | 0.0374 (8) | 0.0235 (7) | −0.0010 (7) | 0.0013 (6) | 0.0029 (6) |
C10 | 0.0296 (7) | 0.0275 (7) | 0.0258 (7) | −0.0001 (5) | −0.0005 (6) | 0.0059 (5) |
C11 | 0.0436 (9) | 0.0560 (10) | 0.0259 (8) | −0.0009 (7) | −0.0025 (7) | 0.0044 (7) |
C12 | 0.0539 (11) | 0.0319 (8) | 0.0614 (12) | 0.0133 (7) | −0.0163 (9) | −0.0029 (8) |
N13 | 0.0217 (6) | 0.0230 (6) | 0.0208 (6) | −0.0015 (4) | 0.0001 (4) | 0.0008 (5) |
Cl1X | 0.0248 (3) | 0.0249 (3) | 0.0244 (3) | 0.000 | −0.00197 (15) | 0.000 |
Cl1Y | 0.0339 (3) | 0.0247 (3) | 0.0315 (3) | 0.000 | 0.00491 (17) | 0.000 |
C1—C2 | 1.3962 (18) | C8—H8C | 0.9600 |
C1—C6 | 1.3994 (19) | C9—H9A | 0.9600 |
C1—N13 | 1.4812 (16) | C9—H9B | 0.9600 |
C2—C3 | 1.3996 (19) | C9—H9C | 0.9600 |
C2—C10 | 1.5171 (19) | C10—C11 | 1.528 (2) |
C3—C4 | 1.380 (2) | C10—C12 | 1.532 (2) |
C3—H3 | 0.9300 | C10—H10 | 0.9800 |
C4—C5 | 1.385 (2) | C11—H11A | 0.9600 |
C4—H4 | 0.9300 | C11—H11B | 0.9600 |
C5—C6 | 1.3959 (19) | C11—H11C | 0.9600 |
C5—H5 | 0.9300 | C12—H12A | 0.9600 |
C6—C7 | 1.5202 (19) | C12—H12B | 0.9600 |
C7—C8 | 1.524 (2) | C12—H12C | 0.9600 |
C7—C9 | 1.533 (2) | N13—H13X | 0.90 (2) |
C7—H7 | 0.9800 | N13—H13Y | 0.93 (2) |
C8—H8A | 0.9600 | N13—H13Z | 0.921 (19) |
C8—H8B | 0.9600 | ||
C2—C1—C6 | 123.12 (12) | C7—C9—H9A | 109.5 |
C2—C1—N13 | 118.08 (11) | C7—C9—H9B | 109.5 |
C6—C1—N13 | 118.79 (11) | H9A—C9—H9B | 109.5 |
C1—C2—C3 | 117.24 (12) | C7—C9—H9C | 109.5 |
C1—C2—C10 | 123.93 (12) | H9A—C9—H9C | 109.5 |
C3—C2—C10 | 118.83 (12) | H9B—C9—H9C | 109.5 |
C4—C3—C2 | 121.14 (13) | C2—C10—C11 | 110.86 (12) |
C4—C3—H3 | 119.4 | C2—C10—C12 | 109.97 (12) |
C2—C3—H3 | 119.4 | C11—C10—C12 | 111.61 (14) |
C3—C4—C5 | 120.12 (13) | C2—C10—H10 | 108.1 |
C3—C4—H4 | 119.9 | C11—C10—H10 | 108.1 |
C5—C4—H4 | 119.9 | C12—C10—H10 | 108.1 |
C4—C5—C6 | 121.31 (13) | C10—C11—H11A | 109.5 |
C4—C5—H5 | 119.3 | C10—C11—H11B | 109.5 |
C6—C5—H5 | 119.3 | H11A—C11—H11B | 109.5 |
C5—C6—C1 | 117.07 (12) | C10—C11—H11C | 109.5 |
C5—C6—C7 | 120.72 (12) | H11A—C11—H11C | 109.5 |
C1—C6—C7 | 122.20 (12) | H11B—C11—H11C | 109.5 |
C6—C7—C8 | 113.37 (12) | C10—C12—H12A | 109.5 |
C6—C7—C9 | 109.69 (11) | C10—C12—H12B | 109.5 |
C8—C7—C9 | 111.36 (12) | H12A—C12—H12B | 109.5 |
C6—C7—H7 | 107.4 | C10—C12—H12C | 109.5 |
C8—C7—H7 | 107.4 | H12A—C12—H12C | 109.5 |
C9—C7—H7 | 107.4 | H12B—C12—H12C | 109.5 |
C7—C8—H8A | 109.5 | C1—N13—H13X | 113.4 (11) |
C7—C8—H8B | 109.5 | C1—N13—H13Y | 110.0 (12) |
H8A—C8—H8B | 109.5 | H13X—N13—H13Y | 105.1 (16) |
C7—C8—H8C | 109.5 | C1—N13—H13Z | 111.5 (11) |
H8A—C8—H8C | 109.5 | H13X—N13—H13Z | 105.7 (15) |
H8B—C8—H8C | 109.5 | H13Y—N13—H13Z | 110.9 (16) |
C6—C1—C2—C3 | −0.23 (19) | N13—C1—C6—C5 | 179.19 (11) |
N13—C1—C2—C3 | −179.18 (11) | C2—C1—C6—C7 | −178.28 (12) |
C6—C1—C2—C10 | 179.28 (12) | N13—C1—C6—C7 | 0.66 (18) |
N13—C1—C2—C10 | 0.33 (19) | C5—C6—C7—C8 | 28.51 (18) |
C1—C2—C3—C4 | 0.0 (2) | C1—C6—C7—C8 | −153.01 (13) |
C10—C2—C3—C4 | −179.55 (13) | C5—C6—C7—C9 | −96.67 (15) |
C2—C3—C4—C5 | 0.2 (2) | C1—C6—C7—C9 | 81.80 (16) |
C3—C4—C5—C6 | −0.2 (2) | C1—C2—C10—C11 | 118.08 (15) |
C4—C5—C6—C1 | 0.0 (2) | C3—C2—C10—C11 | −62.42 (16) |
C4—C5—C6—C7 | 178.53 (13) | C1—C2—C10—C12 | −118.01 (16) |
C2—C1—C6—C5 | 0.25 (19) | C3—C2—C10—C12 | 61.49 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N13—H13X···Cl1Xi | 0.90 (2) | 2.54 (2) | 3.3777 (12) | 154.7 (15) |
N13—H13Y···Cl1Y | 0.93 (2) | 2.16 (2) | 3.0753 (12) | 167.2 (16) |
N13—H13Z···Cl1X | 0.921 (19) | 2.352 (19) | 3.2493 (12) | 164.8 (14) |
Symmetry code: (i) −x+2, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C12H20N+·Cl− |
Mr | 213.74 |
Crystal system, space group | Orthorhombic, Pbcn |
Temperature (K) | 173 |
a, b, c (Å) | 13.0390 (3), 21.0436 (4), 8.9968 (2) |
V (Å3) | 2468.61 (9) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 2.43 |
Crystal size (mm) | 0.36 × 0.23 × 0.21 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2002) |
Tmin, Tmax | 0.451, 0.597 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23541, 2343, 2248 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.616 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.112, 1.00 |
No. of reflections | 2343 |
No. of parameters | 144 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.21 |
Computer programs: SMART (Bruker, 2006, SAINT (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N13—H13X···Cl1Xi | 0.90 (2) | 2.54 (2) | 3.3777 (12) | 154.7 (15) |
N13—H13Y···Cl1Y | 0.93 (2) | 2.16 (2) | 3.0753 (12) | 167.2 (16) |
N13—H13Z···Cl1X | 0.921 (19) | 2.352 (19) | 3.2493 (12) | 164.8 (14) |
Symmetry code: (i) −x+2, −y+2, −z+2. |
2,6-DIPA chloride is frequently used as a starting material for pharmaceutical synthesis. Hydrochloric acid is a desirable acid for salt formation and during our efforts to purify DIPA by salt formation and crystallization, we formed the title 1:1 salt (Fig. 1). Chlorine anions have an interesting 50:50 occupancy positions, sitting on 2-fold axis with x,y,z coordinates as follows: Cl1X (0, y, 1/4) and Cl1Y (0, y, 3/4).
The structure has all conventional hydrogen-bond donors used. In the crystal structure, four of the protonated NH3 groups face the counter-ions sitting on above mentioned special positions, forming two-dimensional sheets parallel to the (010) planes (Fig. 2). Hydrogen-bond network confirms the following interactions between 50% populated Cl- anions and polar ends of DIPAH+ (NH3+ groups): Cl1X participates a hydrogen-bonding interaction with H13X (2.54 Å separation), H13Z (2.35 Å), and H13Y (2.16 Å) are hydrogen-bonded to Cl1X and Cl1Y, respectively. There is an additional short contact within van der Waals radii between Cl1X and H7 (2.88 Å) yet this interaction does not occur with the Cl1Y occupancy.
The torsion angles from the aromatic group to the isopropyl groups are interesting. The expectation is that the isopropyl groups would eclipse the aromatic ring plane so that the C7—H7 and C10—H10 bonds lie in the same plane as atoms N13, C1, C6 and C7. One of these groups exhibits such a conformation (C1—C2—C10—H10 = -0.21°), while the other shows a slight twist (C1—C6—C7—H7 = -34.62°). The above mentioned Cl1X···H7 short contact is the probable reason for the obvious twist event around C1—C6—C7—H7 area. Similar events are observed in a related DIPA chloride salt structure, where only one of isopropyl hydrogen experiences van der Waals contacts with a Cl- anion (Bond & Doyle, 2003).