Download citation
Download citation
link to html
The title compound, C26H26N4O6·2C4H8O, representing a bis-urea with terminal phenyl­alanine units, crystallized with two tetra­hydro­furan (THF) mol­ecules. The main mol­ecule is located on a crystallographic twofold axis, while the solvent mol­ecule is disordered over two positions, with occupancies of 0.571 (15) and 0.429 (15). The host mol­ecules are linked by N—H...O=C hydrogen bonds and C—H...O contacts with R21(6) and R21(7) ring motifs. The THF mol­ecules enclosed in the crystal are connected to the bis-urea compound via O—H...O and C—H...O inter­actions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2414314623007435/bh4077sup1.cif
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2414314623007435/bh4077Isup2.hkl
Contains datablock I

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2414314623007435/bh4077Isup3.cml
Supplementary material

CCDC reference: 2290568

Key indicators

Structure: I
  • Single-crystal X-ray study
  • T = 153 K
  • Mean [sigma](C-C) = 0.004 Å
  • Disorder in solvent or counterion
  • R factor = 0.040
  • wR factor = 0.107
  • Data-to-parameter ratio = 13.4

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT089_ALERT_3_C Poor Data / Parameter Ratio (Zmax < 18) ........ 6.90 Note PLAT222_ALERT_3_C NonSolvent Resd 1 H Uiso(max)/Uiso(min) Range 4.7 Ratio PLAT230_ALERT_2_C Hirshfeld Test Diff for O2 --C13 . 5.8 s.u. PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds ............... 0.00415 Ang. PLAT911_ALERT_3_C Missing FCF Refl Between Thmin & STh/L= 0.600 3 Report
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 12 Note PLAT003_ALERT_2_G Number of Uiso or Uij Restrained non-H Atoms ... 12 Report PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 1 Report PLAT176_ALERT_4_G The CIF-Embedded .res File Contains SADI Records 3 Report PLAT178_ALERT_4_G The CIF-Embedded .res File Contains SIMU Records 1 Report PLAT186_ALERT_4_G The CIF-Embedded .res File Contains ISOR Records 2 Report PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0100 Report PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0100 Report PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0100 Report PLAT302_ALERT_4_G Anion/Solvent/Minor-Residue Disorder (Resd 2 ) 100% Note PLAT302_ALERT_4_G Anion/Solvent/Minor-Residue Disorder (Resd 3 ) 100% Note PLAT304_ALERT_4_G Non-Integer Number of Atoms in ..... (Resd 2 ) 7.42 Check PLAT304_ALERT_4_G Non-Integer Number of Atoms in ..... (Resd 3 ) 5.58 Check PLAT398_ALERT_2_G Deviating C-O-C Angle From 120 for O4B . 107.1 Degree PLAT480_ALERT_4_G Long H...A H-Bond Reported H8 ..O2 . 2.70 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H14B ..O3 . 2.78 Ang. PLAT717_ALERT_1_G D...A Unknown or Inconsistent Label .......... <I>CG</I> Check PLAT717_ALERT_1_G D...A Unknown or Inconsistent Label .......... <I>CG</I> Check PLAT717_ALERT_1_G D...A Unknown or Inconsistent Label .......... <I>CG</I> Check PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 95 Note PLAT899_ALERT_4_G SHELXL2018 is Deprecated and Succeeded by SHELXL 2019/3 Note PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Theta(Min). 2 Note PLAT913_ALERT_3_G Missing # of Very Strong Reflections in FCF .... 1 Note PLAT933_ALERT_2_G Number of HKL-OMIT Records in Embedded .res File 3 Note PLAT967_ALERT_5_G Note: Two-Theta Cutoff Value in Embedded .res .. 54.0 Degree PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 5 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 5 ALERT level C = Check. Ensure it is not caused by an omission or oversight 26 ALERT level G = General information/check it is not something unexpected 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 10 ALERT type 3 Indicator that the structure quality may be low 11 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check

Computing details top

Data collection: X-AREA (Stoe & Cie, 2009); cell refinement: X-AREA (Stoe & Cie, 2009); data reduction: X-RED (Stoe & Cie, 2009); program(s) used to solve structure: SHELXT2018 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: XP (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 2012), publCIF (Westrip, 2010) and shelXle (Hübschle et al., 2011).

N,N'-[1,4-Phenylenebis(iminocarbonyl)]bis(L-phenylalanine) tetrahydrofuran disolvate top
Crystal data top
C26H26N4O6·2C4H8ODx = 1.296 Mg m3
Mr = 634.71Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41Cell parameters from 1266 reflections
a = 13.632 (4) Åθ = 3.1–26.7°
c = 17.507 (6) ŵ = 0.09 mm1
V = 3253 (2) Å3T = 153 K
Z = 4Chunk, colourless
F(000) = 13520.10 × 0.05 × 0.04 mm
Data collection top
STOE IPDS 2T
diffractometer
3269 reflections with I > 2σ(I)
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focusRint = 0.028
Plane graphite monochromatorθmax = 27.0°, θmin = 3.0°
Detector resolution: 6.67 pixels mm-1h = 1717
rotation method scansk = 1717
25670 measured reflectionsl = 2222
3554 independent reflections
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: mixed
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0557P)2 + 2.0532P]
where P = (Fo2 + 2Fc2)/3
3554 reflections(Δ/σ)max = 0.002
266 parametersΔρmax = 0.31 e Å3
95 restraintsΔρmin = 0.20 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N10.38152 (16)0.16933 (16)0.54757 (12)0.0285 (4)
H1N0.376 (2)0.194 (2)0.504 (2)0.030 (8)*
N20.27971 (16)0.29428 (15)0.58122 (12)0.0278 (4)
H2N0.285 (2)0.310 (2)0.533 (2)0.034 (8)*
O10.31329 (14)0.17368 (13)0.66808 (10)0.0302 (4)
O20.11068 (16)0.19008 (15)0.57508 (14)0.0445 (5)
O30.02642 (16)0.30373 (19)0.63921 (15)0.0529 (6)
H3O0.023 (4)0.263 (4)0.627 (5)0.14 (3)*
C10.3225 (2)0.5393 (2)0.54681 (18)0.0389 (6)
H10.3026270.5245280.4960960.047*
C20.4061 (2)0.5960 (2)0.55894 (19)0.0460 (7)
H2A0.4427630.6195100.5165910.055*
C30.4360 (2)0.6185 (2)0.6331 (2)0.0497 (8)
H30.4930130.6570490.6415310.060*
C40.3818 (3)0.5840 (2)0.69431 (19)0.0466 (7)
H40.4017260.5990880.7449670.056*
C50.2986 (2)0.5276 (2)0.68217 (16)0.0380 (6)
H50.2620050.5045950.7247420.046*
C60.26774 (19)0.50397 (18)0.60822 (16)0.0313 (5)
C70.17887 (19)0.44008 (19)0.59624 (15)0.0327 (6)
H7A0.1612320.4401970.5413780.039*
H7B0.1228630.4676600.6251260.039*
C80.19711 (18)0.33349 (18)0.62249 (14)0.0283 (5)
H80.2130170.3337950.6782560.034*
C90.32327 (17)0.20934 (17)0.60329 (13)0.0252 (5)
C100.43982 (17)0.08384 (17)0.55283 (14)0.0250 (5)
C110.47052 (18)0.04159 (18)0.62133 (14)0.0275 (5)
H110.4509350.0699670.6684860.033*
C120.4700 (2)0.0413 (2)0.48385 (14)0.0341 (6)
H120.4493940.0689880.4367340.041*
C130.1072 (2)0.2663 (2)0.60914 (15)0.0370 (6)
O4A0.6924 (5)0.1252 (4)0.3577 (7)0.048 (2)0.571 (15)
C14A0.5578 (8)0.2254 (9)0.3317 (12)0.062 (5)0.571 (15)
H14A0.5194200.2243670.3796700.074*0.571 (15)
H14B0.5152060.2476030.2892620.074*0.571 (15)
C15A0.6031 (10)0.1256 (10)0.3148 (10)0.046 (4)0.571 (15)
H15A0.5590790.0719680.3316440.055*0.571 (15)
H15B0.6163520.1180030.2595580.055*0.571 (15)
C16A0.7185 (6)0.2206 (5)0.3801 (6)0.057 (2)0.571 (15)
H16A0.7871870.2348620.3655130.068*0.571 (15)
H16B0.7119660.2281350.4361020.068*0.571 (15)
C17A0.6488 (4)0.2893 (4)0.3391 (4)0.0483 (19)0.571 (15)
H17A0.6746770.3086540.2884020.058*0.571 (15)
H17B0.6354960.3489370.3696270.058*0.571 (15)
O4B0.6865 (10)0.1184 (7)0.3439 (12)0.081 (5)0.429 (15)
C14B0.5595 (10)0.2278 (11)0.3178 (12)0.043 (4)0.429 (15)
H14C0.4915710.2256480.3377870.052*0.429 (15)
H14D0.5604010.2684100.2708820.052*0.429 (15)
C15B0.5969 (15)0.1248 (10)0.3012 (13)0.046 (4)0.429 (15)
H15C0.5491840.0747720.3185030.056*0.429 (15)
H15D0.6091680.1158310.2459040.056*0.429 (15)
C16B0.7256 (7)0.2178 (7)0.3503 (8)0.053 (3)0.429 (15)
H16C0.7489520.2435470.3006630.064*0.429 (15)
H16D0.7786080.2224870.3887810.064*0.429 (15)
C17B0.6294 (8)0.2691 (10)0.3774 (10)0.088 (4)0.429 (15)
H17C0.6107770.2492810.4298180.105*0.429 (15)
H17D0.6342100.3414530.3744490.105*0.429 (15)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0345 (11)0.0309 (10)0.0202 (9)0.0040 (9)0.0040 (8)0.0030 (8)
N20.0338 (11)0.0261 (10)0.0235 (10)0.0025 (8)0.0050 (8)0.0009 (8)
O10.0355 (10)0.0342 (9)0.0209 (8)0.0044 (7)0.0033 (7)0.0026 (7)
O20.0431 (11)0.0363 (11)0.0540 (13)0.0057 (8)0.0076 (10)0.0039 (9)
O30.0357 (11)0.0657 (15)0.0574 (14)0.0110 (10)0.0096 (10)0.0175 (12)
C10.0424 (15)0.0388 (14)0.0355 (13)0.0037 (12)0.0062 (12)0.0026 (12)
C20.0465 (17)0.0469 (17)0.0445 (17)0.0021 (13)0.0145 (14)0.0026 (13)
C30.0425 (16)0.0437 (17)0.063 (2)0.0089 (13)0.0042 (15)0.0104 (15)
C40.0492 (18)0.0451 (17)0.0454 (16)0.0092 (14)0.0022 (13)0.0104 (13)
C50.0451 (16)0.0353 (14)0.0337 (14)0.0013 (12)0.0016 (12)0.0016 (11)
C60.0337 (13)0.0249 (11)0.0353 (13)0.0066 (10)0.0010 (10)0.0003 (10)
C70.0294 (12)0.0328 (13)0.0360 (14)0.0061 (10)0.0019 (10)0.0012 (11)
C80.0277 (11)0.0333 (12)0.0240 (11)0.0004 (10)0.0008 (9)0.0005 (9)
C90.0268 (11)0.0263 (11)0.0224 (11)0.0041 (9)0.0001 (9)0.0019 (9)
C100.0250 (11)0.0284 (11)0.0218 (10)0.0018 (9)0.0011 (9)0.0006 (9)
C110.0309 (11)0.0306 (12)0.0210 (11)0.0013 (10)0.0007 (9)0.0018 (9)
C120.0396 (14)0.0427 (15)0.0199 (11)0.0115 (12)0.0000 (10)0.0012 (10)
C130.0344 (13)0.0479 (16)0.0289 (13)0.0011 (12)0.0001 (11)0.0060 (11)
O4A0.038 (3)0.034 (3)0.072 (5)0.003 (2)0.021 (3)0.001 (2)
C14A0.048 (6)0.054 (7)0.083 (9)0.003 (5)0.003 (5)0.012 (5)
C15A0.037 (5)0.059 (7)0.043 (5)0.006 (4)0.002 (3)0.015 (4)
C16A0.057 (3)0.055 (3)0.059 (3)0.003 (2)0.009 (2)0.002 (2)
C17A0.049 (3)0.038 (2)0.058 (3)0.0014 (19)0.006 (2)0.000 (2)
O4B0.113 (10)0.064 (6)0.065 (6)0.058 (6)0.020 (5)0.008 (5)
C14B0.040 (7)0.047 (7)0.042 (5)0.024 (5)0.003 (4)0.003 (4)
C15B0.056 (8)0.025 (6)0.058 (9)0.009 (5)0.011 (5)0.010 (5)
C16B0.052 (3)0.053 (3)0.055 (4)0.001 (2)0.007 (3)0.003 (3)
C17B0.088 (5)0.087 (5)0.089 (5)0.009 (3)0.004 (3)0.004 (3)
Geometric parameters (Å, º) top
N1—C91.371 (3)C11—H110.9500
N1—C101.413 (3)C12—C12i1.390 (5)
N1—H1N0.84 (4)C12—H120.9500
N2—C91.357 (3)O4A—C16A1.405 (8)
N2—C81.441 (3)O4A—C15A1.430 (8)
N2—H2N0.88 (3)C14A—C15A1.522 (9)
O1—C91.241 (3)C14A—C17A1.522 (10)
O2—C131.199 (4)C14A—H14A0.9900
O3—C131.324 (4)C14A—H14B0.9900
O3—H3O0.90 (3)C15A—H15A0.9900
C1—C21.393 (5)C15A—H15B0.9900
C1—C61.395 (4)C16A—C17A1.515 (8)
C1—H10.9500C16A—H16A0.9900
C2—C31.395 (5)C16A—H16B0.9900
C2—H2A0.9500C17A—H17A0.9900
C3—C41.383 (5)C17A—H17B0.9900
C3—H30.9500O4B—C15B1.435 (10)
C4—C51.387 (4)O4B—C16B1.460 (10)
C4—H40.9500C14B—C15B1.521 (9)
C5—C61.399 (4)C14B—C17B1.521 (11)
C5—H50.9500C14B—H14C0.9900
C6—C71.507 (4)C14B—H14D0.9900
C7—C81.544 (3)C15B—H15C0.9900
C7—H7A0.9900C15B—H15D0.9900
C7—H7B0.9900C16B—C17B1.560 (10)
C8—C131.547 (4)C16B—H16C0.9900
C8—H81.0000C16B—H16D0.9900
C10—C111.395 (3)C17B—H17C0.9900
C10—C121.402 (3)C17B—H17D0.9900
C11—C11i1.390 (5)
C9—N1—C10127.4 (2)O3—C13—C8111.8 (3)
C9—N1—H1N116 (2)C16A—O4A—C15A111.0 (7)
C10—N1—H1N116 (2)C15A—C14A—C17A101.4 (8)
C9—N2—C8121.0 (2)C15A—C14A—H14A111.5
C9—N2—H2N117 (2)C17A—C14A—H14A111.5
C8—N2—H2N117 (2)C15A—C14A—H14B111.5
C13—O3—H3O107 (5)C17A—C14A—H14B111.5
C2—C1—C6120.8 (3)H14A—C14A—H14B109.3
C2—C1—H1119.6O4A—C15A—C14A104.3 (7)
C6—C1—H1119.6O4A—C15A—H15A110.9
C1—C2—C3120.2 (3)C14A—C15A—H15A110.9
C1—C2—H2A119.9O4A—C15A—H15B110.9
C3—C2—H2A119.9C14A—C15A—H15B110.9
C4—C3—C2119.4 (3)H15A—C15A—H15B108.9
C4—C3—H3120.3O4A—C16A—C17A106.4 (6)
C2—C3—H3120.3O4A—C16A—H16A110.5
C3—C4—C5120.4 (3)C17A—C16A—H16A110.5
C3—C4—H4119.8O4A—C16A—H16B110.5
C5—C4—H4119.8C17A—C16A—H16B110.5
C4—C5—C6121.0 (3)H16A—C16A—H16B108.6
C4—C5—H5119.5C16A—C17A—C14A101.4 (6)
C6—C5—H5119.5C16A—C17A—H17A111.5
C1—C6—C5118.2 (3)C14A—C17A—H17A111.5
C1—C6—C7121.5 (3)C16A—C17A—H17B111.5
C5—C6—C7120.2 (2)C14A—C17A—H17B111.5
C6—C7—C8111.9 (2)H17A—C17A—H17B109.3
C6—C7—H7A109.2C15B—O4B—C16B107.1 (10)
C8—C7—H7A109.2C15B—C14B—C17B105.2 (7)
C6—C7—H7B109.2C15B—C14B—H14C110.7
C8—C7—H7B109.2C17B—C14B—H14C110.7
H7A—C7—H7B107.9C15B—C14B—H14D110.7
N2—C8—C7109.0 (2)C17B—C14B—H14D110.7
N2—C8—C13108.9 (2)H14C—C14B—H14D108.8
C7—C8—C13112.6 (2)O4B—C15B—C14B104.0 (8)
N2—C8—H8108.8O4B—C15B—H15C111.0
C7—C8—H8108.8C14B—C15B—H15C111.0
C13—C8—H8108.8O4B—C15B—H15D111.0
O1—C9—N2123.1 (2)C14B—C15B—H15D111.0
O1—C9—N1123.9 (2)H15C—C15B—H15D109.0
N2—C9—N1113.0 (2)O4B—C16B—C17B97.6 (8)
C11—C10—C12118.8 (2)O4B—C16B—H16C112.2
C11—C10—N1124.4 (2)C17B—C16B—H16C112.2
C12—C10—N1116.8 (2)O4B—C16B—H16D112.2
C11i—C11—C10120.70 (14)C17B—C16B—H16D112.2
C11i—C11—H11119.7H16C—C16B—H16D109.8
C10—C11—H11119.7C14B—C17B—C16B98.8 (10)
C12i—C12—C10120.52 (15)C14B—C17B—H17C112.0
C12i—C12—H12119.7C16B—C17B—H17C112.0
C10—C12—H12119.7C14B—C17B—H17D112.0
O2—C13—O3124.4 (3)C16B—C17B—H17D112.0
O2—C13—C8123.9 (3)H17C—C17B—H17D109.7
C6—C1—C2—C30.1 (5)C9—N1—C10—C12161.9 (2)
C1—C2—C3—C40.1 (5)C12—C10—C11—C11i0.4 (4)
C2—C3—C4—C50.1 (5)N1—C10—C11—C11i178.7 (3)
C3—C4—C5—C60.2 (5)C11—C10—C12—C12i0.4 (5)
C2—C1—C6—C50.4 (4)N1—C10—C12—C12i178.1 (3)
C2—C1—C6—C7178.2 (3)N2—C8—C13—O25.8 (4)
C4—C5—C6—C10.5 (4)C7—C8—C13—O2126.8 (3)
C4—C5—C6—C7178.2 (3)N2—C8—C13—O3173.6 (2)
C1—C6—C7—C8110.2 (3)C7—C8—C13—O352.6 (3)
C5—C6—C7—C868.4 (3)C16A—O4A—C15A—C14A16.5 (18)
C9—N2—C8—C7167.2 (2)C17A—C14A—C15A—O4A34.2 (17)
C9—N2—C8—C1369.6 (3)C15A—O4A—C16A—C17A8.6 (15)
C6—C7—C8—N257.9 (3)O4A—C16A—C17A—C14A29.8 (13)
C6—C7—C8—C13178.9 (2)C15A—C14A—C17A—C16A38.3 (15)
C8—N2—C9—O118.6 (4)C16B—O4B—C15B—C14B28 (2)
C8—N2—C9—N1163.4 (2)C17B—C14B—C15B—O4B6 (2)
C10—N1—C9—O10.6 (4)C15B—O4B—C16B—C17B48.8 (18)
C10—N1—C9—N2177.4 (2)C15B—C14B—C17B—C16B34 (2)
C9—N1—C10—C1119.7 (4)O4B—C16B—C17B—C14B48.8 (16)
Symmetry code: (i) x+1, y, z.
Hydrogen-bond geometry (Å, º) top
Cg is defined as the centre of gravity of the rings: Cg1 is C1···C6; Cg2 is C10/C11/C12/C10'/C11'/C12' with primed atoms generated by symmetry -x+1, -y, z.
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1ii0.84 (4)2.32 (3)3.091 (3)153 (3)
N2—H2N···O1ii0.88 (3)2.08 (4)2.937 (3)163 (3)
O3—H3O···O4Aiii0.90 (3)1.73 (3)2.623 (7)175 (7)
C5—H5···O2iv0.952.553.464 (4)161
C8—H8···O2iv1.002.703.629 (4)155
C11—H11···O10.952.352.916 (3)118
C14A—H14B···O3v0.992.783.581 (18)139
C16A—H16A···Cg1vi0.992.613.497 (8)149
C16B—H16D···Cg1vi0.992.823.449 (10)122
C17A—H17B···Cg2vii0.993.003.574 (8)118
Symmetry codes: (ii) y+1/2, x, z1/4; (iii) y, x1/2, z+1/4; (iv) y, x+1/2, z+1/4; (v) x+1/2, y+1/2, z1/2; (vi) x, y+1, z; (vii) y+1/2, x+1, z1/4.
 

Follow IUCrData
Sign up for e-alerts
Follow IUCrData on Twitter
Follow us on facebook
Sign up for RSS feeds