The structure of the title compound, C
17H
18FN
3O
3·6H
2O, has been redetermined at 120 K. An invariom refinement, a structural refinement using aspherical scattering factors from theoretically predicted multipole population parameters, yields accurate geometry and anisotropic displacement parameters, including hydrogen-bonding parameters. All potential hydrogen-bond donors and acceptors are involved in hydrogen bonding, forming an intricate three-dimensional network of N—H
O and O—H
O bonds.
Supporting information
CCDC reference: 712460
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean (C-C) = 0.001 Å
- R factor = 0.024
- wR factor = 0.032
- Data-to-parameter ratio = 17.1
checkCIF/PLATON results
No syntax errors found
Alert level A
DIFF020_ALERT_1_A _diffrn_standards_interval_count and
_diffrn_standards_interval_time are missing. Number of measurements
between standards or time (min) between standards.
DIFF022_ALERT_1_A _diffrn_standards_decay_% is missing
Percentage decrease in standards intensity.
Alert level C
Value of measurement temperature given = 120.000
Value of melting point given = 0.000
GOODF01_ALERT_2_C The least squares goodness of fit parameter lies
outside the range 0.80 <> 2.00
Goodness of fit given = 2.089
PLAT087_ALERT_2_C Unsatisfactory S value (Too High) .............. 2.09
PLAT353_ALERT_3_C Long N-H Bond (0.87A) N3 - H311 ... 1.02 Ang.
PLAT353_ALERT_3_C Long N-H Bond (0.87A) N3 - H312 ... 1.02 Ang.
PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
PLAT153_ALERT_1_C The su's on the Cell Axes are Equal (x 100000) 30 Ang.
PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 200 Deg.
PLAT703_ALERT_1_C Torsion Calc 153.24(5), Rep 153.30(10), Dev.. 1.20 Sigma
C(8)-C(6)-C(7)-O(1) 1.555 1.555 1.555 1.555
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 4
H2 O
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 6
H2 O
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 7
H2 O
2 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
11 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
6 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
2 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
3 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Ciprofloxacin (Sigma Aldrich) was used as received. Single crystals suitable
for X-ray measurements were obtained by recrystallization from water by slow
evaporation at room temperature.
The refinement was initiated with the original structure determined at ambient
temperature by Turel et al. (1997) (CSD refcode COVPIN). We note
that
the numbering scheme in the original paper differs from that of the deposited
structure. We used the same numbering scheme as in COVPIN. We also note that
although the original paper reports refined H atom positions, these are not
present in the deposited structure. An Independent Atom Model (IAM) refinement
with CRYSTALS (Betteridge et al., 2003) provided starting
values
for subsequent invariom refinement (Dittrich et al., 2005),
which is
based on the Hansen & Coppens multipole formalism (Hansen & Coppens,
1978).
This non-spherical atom refinement, which included reflections with [F
> 3 σ(F)], was performed with XDLSM as included in the
XD package (Koritsánszky et al., 2003). XD input
files
were processed with the program InvariomTool (Hübschle et al.,
2007). For invariom refinement, non-spherical valence scattering
contributions
for atoms in an environment of simple bonds were obtained from theoretical
calculations on model compounds that included nearest-neighbour atoms, whereas
for H-atoms and atoms in a delocalized chemical environment, model compounds
also included the next-nearest neighbour atoms (see table in the Supplementary
Information). Full details for the general invariom modelling procedure of
organic molecules can be found in Hübschle et al. (2007).
Since in
the invariom refinement the multipole parameters are fixed at theoretically
predicted values, only the positional and displacement parameters were
refined. Bond distances to H-atoms were freely refined due to the high quality
of the data set, but can optionally be set to the values found in the model
compounds, which are very close to those obtained from neutron diffraction.
Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: from known coordinates (Turel et al., 1997); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003) and XD (Koritsánszky et
al., 2003); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: XDCIF (Koritsánszky et al., 2003) and publCIF (Westrip,
2008).
1-cyclopropyl-6-fluoro-4-oxo-7-(piperazin-4-ium-1-yl)-1,4-dihydroquinoline-
3-carboxylate hexahydrate
top
Crystal data top
C17H18FN3O3·6H2O | Z = 2.0 |
Mr = 439.44 | F(000) = 468 |
Triclinic, P1 | Dx = 1.426 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5079 (3) Å | Cell parameters from 9906 reflections |
b = 9.9437 (3) Å | θ = 2.6–35.8° |
c = 11.0391 (3) Å | µ = 0.12 mm−1 |
α = 94.227 (2)° | T = 120 K |
β = 100.206 (2)° | Plate, colourless |
γ = 91.327 (2)° | 0.30 × 0.25 × 0.03 mm |
V = 1023.66 (6) Å3 | |
Data collection top
Bruker APEXII diffractometer | 7766 independent reflections |
Radiation source: Mo microsource | 6705 reflections with F > 3σ(F) |
Graphite monochromator | Rint = 0.037 |
ω scans | θmax = 33.1°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→14 |
Tmin = 0.918, Tmax = 0.996 | k = −15→15 |
35927 measured reflections | l = 0→16 |
Refinement top
Refinement on F | Primary atom site location: none |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.024 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.032 | All H-atom parameters refined |
S = 2.09 | w1 = 1/[s2(Fo)] |
6705 reflections | (Δ/σ)max < 0.001 |
391 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
Crystal data top
C17H18FN3O3·6H2O | γ = 91.327 (2)° |
Mr = 439.44 | V = 1023.66 (6) Å3 |
Triclinic, P1 | Z = 2.0 |
a = 9.5079 (3) Å | Mo Kα radiation |
b = 9.9437 (3) Å | µ = 0.12 mm−1 |
c = 11.0391 (3) Å | T = 120 K |
α = 94.227 (2)° | 0.30 × 0.25 × 0.03 mm |
β = 100.206 (2)° | |
Data collection top
Bruker APEXII diffractometer | 7766 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 6705 reflections with F > 3σ(F) |
Tmin = 0.918, Tmax = 0.996 | Rint = 0.037 |
35927 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.024 | 0 restraints |
wR(F2) = 0.032 | All H-atom parameters refined |
S = 2.09 | Δρmax = 0.22 e Å−3 |
6705 reflections | Δρmin = −0.29 e Å−3 |
391 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
F(1) | −0.33045 (4) | 0.12852 (4) | 0.58299 (3) | 0.017 | |
O(1) | 0.40535 (4) | 0.62476 (4) | 0.78894 (4) | 0.016 | |
O(2) | 0.20874 (4) | 0.70663 (4) | 0.84664 (4) | 0.017 | |
O(3) | −0.01084 (5) | 0.50635 (4) | 0.80861 (4) | 0.018 | |
O(41) | 0.51207 (6) | 0.36492 (5) | 0.80865 (6) | 0.032 | |
O(51) | 0.67335 (6) | 0.70056 (6) | 0.93720 (5) | 0.026 | |
O(61) | −0.12179 (6) | 0.06543 (6) | −0.12561 (5) | 0.028 | |
O(71) | −0.05227 (6) | 0.79577 (5) | 0.91011 (5) | 0.027 | |
O(81) | −0.21443 (5) | 0.44232 (6) | 0.94044 (5) | 0.024 | |
O(91) | −0.35014 (5) | 0.08636 (5) | 0.00415 (4) | 0.017 | |
N(1) | 0.17346 (5) | 0.36898 (5) | 0.51490 (4) | 0.011 | |
N(2) | −0.22506 (5) | 0.04178 (5) | 0.37452 (4) | 0.011 | |
N(3) | −0.37382 (5) | −0.12031 (5) | 0.16130 (5) | 0.012 | |
C(1) | 0.23877 (6) | 0.33110 (6) | 0.40859 (5) | 0.012 | |
C(2) | 0.39731 (6) | 0.31298 (7) | 0.42941 (6) | 0.018 | |
C(3) | 0.29514 (6) | 0.19203 (6) | 0.39590 (6) | 0.016 | |
C(4) | 0.04233 (5) | 0.31170 (5) | 0.52812 (5) | 0.01 | |
C(5) | 0.23769 (6) | 0.46656 (5) | 0.59958 (5) | 0.011 | |
C(6) | 0.18357 (6) | 0.51677 (5) | 0.70044 (5) | 0.011 | |
C(7) | 0.27219 (6) | 0.62394 (5) | 0.78547 (5) | 0.012 | |
C(8) | 0.04741 (6) | 0.46515 (6) | 0.72033 (5) | 0.012 | |
C(9) | −0.02011 (5) | 0.35741 (5) | 0.62955 (5) | 0.01 | |
C(10) | −0.14985 (6) | 0.29436 (6) | 0.64428 (5) | 0.012 | |
C(11) | −0.21170 (6) | 0.19255 (6) | 0.56113 (5) | 0.012 | |
C(12) | −0.15499 (6) | 0.14755 (5) | 0.45515 (5) | 0.011 | |
C(13) | −0.14735 (6) | −0.01330 (6) | 0.27971 (5) | 0.012 | |
C(14) | −0.22196 (6) | −0.14286 (6) | 0.21485 (5) | 0.013 | |
C(15) | −0.44960 (6) | −0.06561 (6) | 0.26046 (5) | 0.013 | |
C(16) | −0.37577 (6) | 0.06451 (6) | 0.32136 (5) | 0.012 | |
C(17) | −0.02664 (6) | 0.20945 (5) | 0.44071 (5) | 0.011 | |
H(311) | −0.4250 (10) | −0.2100 (10) | 0.1250 (10) | 0.043 (3) | |
H(312) | −0.3779 (9) | −0.0550 (9) | 0.0933 (9) | 0.027 (2) | |
H(11) | 0.1918 (9) | 0.3733 (8) | 0.3296 (8) | 0.029 (2) | |
H(21) | 0.4516 (9) | 0.3257 (8) | 0.5233 (8) | 0.029 (2) | |
H(22) | 0.4485 (9) | 0.3462 (9) | 0.3602 (9) | 0.037 (2) | |
H(31) | 0.2831 (9) | 0.1433 (9) | 0.3068 (9) | 0.033 (2) | |
H(32) | 0.2849 (9) | 0.1304 (9) | 0.4675 (8) | 0.035 (2) | |
H(51) | 0.3399 (9) | 0.5067 (9) | 0.5852 (7) | 0.028 (2) | |
H(101) | −0.1957 (9) | 0.3228 (9) | 0.7198 (8) | 0.031 (2) | |
H(131) | −0.0424 (9) | −0.0394 (9) | 0.3266 (8) | 0.029 (2) | |
H(132) | −0.1367 (9) | 0.0571 (9) | 0.2100 (8) | 0.028 (2) | |
H(141) | −0.1715 (9) | −0.1792 (9) | 0.1422 (8) | 0.030 (2) | |
H(142) | −0.2228 (9) | −0.2200 (9) | 0.2761 (8) | 0.028 (2) | |
H(151) | −0.4442 (9) | −0.1406 (9) | 0.3245 (8) | 0.034 (2) | |
H(152) | −0.5590 (10) | −0.0490 (10) | 0.2190 (10) | 0.039 (2) | |
H(161) | −0.3774 (9) | 0.1389 (9) | 0.2537 (8) | 0.030 (2) | |
H(162) | −0.4302 (9) | 0.0975 (8) | 0.3918 (8) | 0.031 (2) | |
H(171) | 0.0170 (8) | 0.1819 (8) | 0.3589 (8) | 0.022 (2) | |
H(411) | 0.6040 (10) | 0.3780 (10) | 0.8550 (10) | 0.039 (3) | |
H(412) | 0.4720 (10) | 0.4530 (10) | 0.8050 (10) | 0.041 (3) | |
H(511) | 0.7020 (10) | 0.6100 (10) | 0.9510 (10) | 0.041 (3) | |
H(512) | 0.5850 (10) | 0.6900 (10) | 0.8910 (10) | 0.039 (3) | |
H(611) | −0.0920 (10) | −0.0250 (10) | −0.1190 (10) | 0.043 (3) | |
H(612) | −0.0550 (10) | 0.1170 (10) | −0.0610 (10) | 0.047 (3) | |
H(711) | 0.0040 (10) | 0.7320 (10) | 0.8750 (10) | 0.049 (3) | |
H(712) | −0.1410 (10) | 0.7550 (10) | 0.9080 (10) | 0.045 (3) | |
H(811) | −0.1790 (10) | 0.4090 (10) | 1.0130 (10) | 0.044 (3) | |
H(812) | −0.1370 (10) | 0.4600 (10) | 0.8990 (10) | 0.040 (3) | |
H(911) | −0.2840 (10) | 0.0710 (10) | −0.0460 (10) | 0.032 (3) | |
H(912) | −0.3176 (9) | 0.1646 (10) | 0.0559 (9) | 0.031 (2) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
F(1) | 0.0139 (2) | 0.0189 (2) | 0.0175 (2) | −0.00660 (10) | 0.00720 (10) | −0.00390 (10) |
O(1) | 0.0106 (2) | 0.0146 (2) | 0.0204 (2) | −0.00230 (10) | 0.0016 (2) | −0.0033 (2) |
O(2) | 0.0155 (2) | 0.0133 (2) | 0.0198 (2) | −0.0025 (2) | 0.0049 (2) | −0.0062 (2) |
O(3) | 0.0158 (2) | 0.0208 (2) | 0.0180 (2) | −0.0067 (2) | 0.0095 (2) | −0.0096 (2) |
O(41) | 0.0217 (2) | 0.0143 (2) | 0.0567 (4) | −0.0022 (2) | 0.0038 (2) | 0.0000 (2) |
O(51) | 0.0192 (2) | 0.0240 (3) | 0.0313 (3) | −0.0029 (2) | −0.0015 (2) | −0.0065 (2) |
O(61) | 0.0268 (3) | 0.0282 (3) | 0.0281 (3) | 0.0032 (2) | 0.0103 (2) | 0.0013 (2) |
O(71) | 0.0217 (2) | 0.0201 (2) | 0.0372 (3) | 0.0010 (2) | 0.0076 (2) | −0.0060 (2) |
O(81) | 0.0186 (2) | 0.0314 (3) | 0.0240 (3) | 0.0036 (2) | 0.0081 (2) | 0.0086 (2) |
O(91) | 0.0157 (2) | 0.0172 (2) | 0.0161 (2) | −0.0035 (2) | 0.0008 (2) | 0.0002 (2) |
N(1) | 0.0100 (2) | 0.0119 (2) | 0.0094 (2) | −0.0008 (2) | 0.0026 (2) | 0.0000 (2) |
N(2) | 0.0087 (2) | 0.0111 (2) | 0.0125 (2) | −0.0006 (2) | 0.0021 (2) | −0.0019 (2) |
N(3) | 0.0105 (2) | 0.0127 (2) | 0.0129 (2) | −0.0005 (2) | 0.0007 (2) | −0.0020 (2) |
C(1) | 0.0107 (2) | 0.0133 (2) | 0.0121 (2) | −0.0001 (2) | 0.0039 (2) | −0.0003 (2) |
C(2) | 0.0110 (2) | 0.0197 (3) | 0.0217 (3) | −0.0010 (2) | 0.0069 (2) | −0.0033 (2) |
C(3) | 0.0140 (2) | 0.0145 (3) | 0.0196 (3) | 0.0016 (2) | 0.0053 (2) | −0.0019 (2) |
C(4) | 0.0087 (2) | 0.0105 (2) | 0.0107 (2) | −0.0005 (2) | 0.0023 (2) | −0.0009 (2) |
C(5) | 0.0095 (2) | 0.0107 (2) | 0.0133 (2) | −0.0014 (2) | 0.0028 (2) | −0.0007 (2) |
C(6) | 0.0097 (2) | 0.0102 (2) | 0.0123 (2) | −0.0016 (2) | 0.0026 (2) | −0.0019 (2) |
C(7) | 0.0108 (2) | 0.0099 (2) | 0.0134 (2) | −0.0012 (2) | 0.0022 (2) | −0.0012 (2) |
C(8) | 0.0105 (2) | 0.0117 (2) | 0.0119 (2) | −0.0011 (2) | 0.0033 (2) | −0.0032 (2) |
C(9) | 0.0092 (2) | 0.0106 (2) | 0.0111 (2) | −0.0010 (2) | 0.0024 (2) | −0.0019 (2) |
C(10) | 0.0101 (2) | 0.0139 (2) | 0.0130 (2) | −0.0022 (2) | 0.0045 (2) | −0.0028 (2) |
C(11) | 0.0100 (2) | 0.0133 (2) | 0.0127 (2) | −0.0022 (2) | 0.0041 (2) | −0.0018 (2) |
C(12) | 0.0089 (2) | 0.0109 (2) | 0.0112 (2) | −0.0006 (2) | 0.0025 (2) | −0.0016 (2) |
C(13) | 0.0092 (2) | 0.0122 (2) | 0.0137 (2) | −0.0001 (2) | 0.0026 (2) | −0.0025 (2) |
C(14) | 0.0111 (2) | 0.0114 (2) | 0.0153 (3) | 0.0009 (2) | 0.0006 (2) | −0.0022 (2) |
C(15) | 0.0096 (2) | 0.0145 (3) | 0.0136 (2) | −0.0019 (2) | 0.0020 (2) | −0.0016 (2) |
C(16) | 0.0090 (2) | 0.0121 (2) | 0.0146 (3) | 0.0007 (2) | 0.0016 (2) | −0.0018 (2) |
C(17) | 0.0090 (2) | 0.0111 (2) | 0.0118 (2) | −0.0013 (2) | 0.0019 (2) | −0.0016 (2) |
Geometric parameters (Å, º) top
F(1)—C(11) | 1.3504 (6) | C(2)—C(3) | 1.5098 (9) |
O(1)—C(7) | 1.2595 (7) | C(2)—H(21) | 1.070 (9) |
O(2)—C(7) | 1.2577 (7) | C(2)—H(22) | 1.045 (10) |
O(3)—C(8) | 1.2520 (7) | C(3)—H(31) | 1.050 (9) |
O(41)—H(411) | 0.931 (11) | C(3)—H(32) | 1.051 (9) |
O(41)—H(412) | 0.965 (11) | C(4)—C(9) | 1.4093 (8) |
O(51)—H(511) | 0.957 (11) | C(4)—C(17) | 1.4125 (8) |
O(51)—H(512) | 0.903 (11) | C(5)—C(6) | 1.3738 (8) |
O(61)—H(611) | 0.948 (12) | C(5)—H(51) | 1.084 (9) |
O(61)—H(612) | 0.969 (12) | C(6)—C(7) | 1.5023 (8) |
O(71)—H(711) | 0.941 (12) | C(6)—C(8) | 1.4400 (7) |
O(71)—H(712) | 0.922 (11) | C(8)—C(9) | 1.4650 (8) |
O(81)—H(811) | 0.904 (11) | C(9)—C(10) | 1.4110 (7) |
O(81)—H(812) | 0.952 (11) | C(10)—C(11) | 1.3629 (8) |
O(91)—H(911) | 0.919 (10) | C(10)—H(101) | 1.031 (9) |
O(91)—H(912) | 0.943 (10) | C(11)—C(12) | 1.4205 (8) |
N(1)—C(1) | 1.4523 (7) | C(12)—C(17) | 1.3933 (7) |
N(1)—C(4) | 1.3940 (7) | C(13)—C(14) | 1.5222 (8) |
N(1)—C(5) | 1.3509 (7) | C(13)—H(131) | 1.086 (9) |
N(2)—C(12) | 1.4006 (7) | C(13)—H(132) | 1.094 (9) |
N(2)—C(13) | 1.4663 (7) | C(14)—H(141) | 1.052 (9) |
N(3)—H(311) | 1.026 (12) | C(14)—H(142) | 1.060 (9) |
N(3)—H(312) | 1.025 (10) | C(15)—C(16) | 1.5103 (8) |
N(2)—C(16) | 1.4782 (7) | C(15)—H(151) | 1.061 (9) |
N(3)—C(14) | 1.4889 (7) | C(15)—H(152) | 1.084 (10) |
N(3)—C(15) | 1.4910 (8) | C(16)—H(161) | 1.087 (9) |
C(1)—C(2) | 1.5010 (8) | C(16)—H(162) | 1.046 (9) |
C(1)—C(3) | 1.5004 (8) | C(17)—H(171) | 1.079 (8) |
C(1)—H(11) | 1.030 (9) | | |
| | | |
H(411)—O(41)—H(412) | 105.7 (8) | O(3)—C(8)—C(9) | 121.14 (5) |
H(511)—O(51)—H(512) | 104.1 (8) | C(6)—C(8)—C(9) | 115.11 (5) |
H(611)—O(61)—H(612) | 103.5 (8) | C(4)—C(9)—C(8) | 121.95 (5) |
H(711)—O(71)—H(712) | 107.6 (8) | C(4)—C(9)—C(10) | 118.27 (5) |
H(811)—O(81)—H(812) | 108.2 (8) | C(8)—C(9)—C(10) | 119.77 (5) |
H(911)—O(91)—H(912) | 106.5 (7) | C(9)—C(10)—C(11) | 119.92 (5) |
C(1)—N(1)—C(4) | 121.37 (5) | C(9)—C(10)—H(101) | 120.0 (5) |
C(1)—N(1)—C(5) | 119.24 (4) | C(11)—C(10)—H(101) | 120.1 (5) |
C(4)—N(1)—C(5) | 119.30 (5) | F(1)—C(11)—C(10) | 118.14 (5) |
C(12)—N(2)—C(13) | 116.04 (4) | F(1)—C(11)—C(12) | 118.45 (5) |
H(311)—N(3)—H(312) | 109.3 (7) | C(10)—C(11)—C(12) | 123.38 (5) |
N(1)—C(1)—C(2) | 118.16 (5) | N(2)—C(12)—C(11) | 119.72 (5) |
N(1)—C(1)—C(3) | 118.70 (5) | N(2)—C(12)—C(17) | 123.50 (5) |
N(1)—C(1)—H(11) | 113.4 (5) | C(11)—C(12)—C(17) | 116.72 (5) |
C(2)—C(1)—C(3) | 60.40 (4) | N(2)—C(13)—C(14) | 110.41 (4) |
C(2)—C(1)—H(11) | 118.3 (5) | N(2)—C(13)—H(131) | 107.3 (4) |
C(3)—C(1)—H(11) | 118.1 (5) | N(2)—C(13)—H(132) | 113.1 (4) |
C(1)—C(2)—C(3) | 59.78 (4) | C(14)—C(13)—H(131) | 107.3 (4) |
C(1)—C(2)—H(21) | 116.0 (4) | C(14)—C(13)—H(132) | 108.5 (4) |
C(1)—C(2)—H(22) | 114.8 (5) | H(131)—C(13)—H(132) | 110.1 (6) |
C(3)—C(2)—H(21) | 116.1 (4) | C(13)—C(14)—H(141) | 111.0 (5) |
C(3)—C(2)—H(22) | 117.3 (5) | C(13)—C(14)—H(142) | 112.0 (4) |
H(21)—C(2)—H(22) | 119.0 (6) | H(141)—C(14)—H(142) | 108.1 (6) |
C(1)—C(3)—C(2) | 59.82 (4) | N(3)—C(14)—C(13) | 111.14 (5) |
C(1)—C(3)—H(31) | 117.8 (5) | N(3)—C(14)—H(141) | 107.5 (4) |
C(1)—C(3)—H(32) | 115.7 (5) | N(3)—C(14)—H(142) | 106.9 (4) |
C(2)—C(3)—H(31) | 118.9 (5) | N(3)—C(15)—C(16) | 109.86 (5) |
C(2)—C(3)—H(32) | 116.4 (5) | N(3)—C(15)—H(151) | 105.8 (5) |
H(31)—C(3)—H(32) | 116.3 (7) | N(3)—C(15)—H(152) | 108.2 (5) |
N(1)—C(4)—C(9) | 119.07 (5) | C(16)—C(15)—H(151) | 110.8 (5) |
N(1)—C(4)—C(17) | 120.24 (5) | C(16)—C(15)—H(152) | 111.0 (5) |
C(9)—C(4)—C(17) | 120.69 (5) | H(151)—C(15)—H(152) | 111.1 (7) |
N(1)—C(5)—C(6) | 125.09 (5) | N(2)—C(16)—C(15) | 110.46 (5) |
N(1)—C(5)—H(51) | 116.1 (4) | N(2)—C(16)—H(161) | 108.3 (4) |
C(6)—C(5)—H(51) | 118.8 (4) | N(2)—C(16)—H(162) | 109.6 (5) |
C(5)—C(6)—C(7) | 117.23 (5) | C(15)—C(16)—H(161) | 110.0 (4) |
C(5)—C(6)—C(8) | 119.45 (5) | C(15)—C(16)—H(162) | 107.3 (5) |
C(7)—C(6)—C(8) | 123.32 (5) | H(161)—C(16)—H(162) | 111.2 (6) |
O(1)—C(7)—O(2) | 124.85 (5) | C(4)—C(17)—C(12) | 120.94 (5) |
O(1)—C(7)—C(6) | 117.03 (5) | C(4)—C(17)—H(171) | 120.0 (4) |
O(2)—C(7)—C(6) | 118.12 (5) | C(12)—C(17)—H(171) | 119.0 (4) |
O(3)—C(8)—C(6) | 123.75 (5) | | |
| | | |
C(4)—N(1)—C(1)—C(2) | −139.1 (1) | N(1)—C(4)—C(17)—C(12) | 177.5 (1) |
C(4)—N(1)—C(1)—C(3) | −69.3 (1) | N(1)—C(4)—C(17)—H(171) | −5.7 (5) |
C(1)—N(1)—C(4)—C(9) | −176.5 (1) | C(17)—C(4)—C(9)—C(8) | −178.7 (1) |
C(1)—N(1)—C(4)—C(17) | 3.4 (1) | C(17)—C(4)—C(9)—C(10) | 2.7 (1) |
C(4)—N(1)—C(1)—H(11) | 76.0 (6) | C(9)—C(4)—C(17)—C(12) | −2.6 (1) |
C(5)—N(1)—C(1)—C(2) | 44.2 (1) | C(9)—C(4)—C(17)—H(171) | 174.2 (5) |
C(5)—N(1)—C(1)—C(3) | 114.0 (1) | N(1)—C(5)—C(6)—C(7) | 179.0 (1) |
C(1)—N(1)—C(5)—C(6) | 176.3 (1) | N(1)—C(5)—C(6)—C(8) | −0.6 (1) |
C(5)—N(1)—C(1)—H(11) | −100.6 (6) | H(51)—C(5)—C(6)—C(7) | −0.8 (6) |
C(1)—N(1)—C(5)—H(51) | −3.9 (6) | H(51)—C(5)—C(6)—C(8) | 179.5 (6) |
C(4)—N(1)—C(5)—C(6) | −0.4 (1) | C(5)—C(6)—C(7)—O(1) | −26.4 (1) |
C(5)—N(1)—C(4)—C(9) | 0.1 (1) | C(5)—C(6)—C(7)—O(2) | 152.9 (1) |
C(5)—N(1)—C(4)—C(17) | −179.9 (1) | C(5)—C(6)—C(8)—O(3) | −178.9 (1) |
C(4)—N(1)—C(5)—H(51) | 179.4 (6) | C(5)—C(6)—C(8)—C(9) | 1.8 (1) |
C(13)—N(2)—C(12)—C(11) | −170.1 (1) | C(8)—C(6)—C(7)—O(1) | 153.3 (1) |
C(12)—N(2)—C(13)—C(14) | 169.4 (1) | C(8)—C(6)—C(7)—O(2) | −27.5 (1) |
C(13)—N(2)—C(12)—C(17) | 7.0 (1) | C(7)—C(6)—C(8)—O(3) | 1.4 (1) |
C(12)—N(2)—C(13)—H(131) | 52.8 (5) | C(7)—C(6)—C(8)—C(9) | −177.9 (1) |
C(12)—N(2)—C(13)—H(132) | −68.8 (5) | O(3)—C(8)—C(9)—C(4) | 178.6 (1) |
N(1)—C(1)—C(2)—C(3) | 108.8 (1) | O(3)—C(8)—C(9)—C(10) | −2.9 (1) |
N(1)—C(1)—C(2)—H(21) | 2.4 (6) | C(6)—C(8)—C(9)—C(4) | −2.1 (1) |
N(1)—C(1)—C(2)—H(22) | −142.7 (6) | C(6)—C(8)—C(9)—C(10) | 176.4 (1) |
N(1)—C(1)—C(3)—C(2) | −107.9 (1) | C(4)—C(9)—C(10)—C(11) | −0.3 (1) |
N(1)—C(1)—C(3)—H(31) | 143.1 (6) | C(4)—C(9)—C(10)—H(101) | 177.3 (6) |
N(1)—C(1)—C(3)—H(32) | −1.1 (6) | C(8)—C(9)—C(10)—C(11) | −178.9 (1) |
C(2)—C(1)—C(3)—C(2) | 0.0 (1) | C(8)—C(9)—C(10)—H(101) | −1.3 (6) |
C(3)—C(1)—C(2)—C(3) | 0.0 (1) | C(9)—C(10)—C(11)—F(1) | 175.5 (1) |
C(3)—C(1)—C(2)—H(21) | −106.5 (6) | C(9)—C(10)—C(11)—C(12) | −2.3 (1) |
C(3)—C(1)—C(2)—H(22) | 108.4 (6) | H(101)—C(10)—C(11)—F(1) | −2.1 (6) |
C(2)—C(1)—C(3)—H(31) | −109.0 (6) | H(101)—C(10)—C(11)—C(12) | −179.9 (6) |
C(2)—C(1)—C(3)—H(32) | 106.9 (6) | F(1)—C(11)—C(12)—N(2) | 1.9 (1) |
H(11)—C(1)—C(2)—C(3) | −108.1 (6) | F(1)—C(11)—C(12)—C(17) | −175.4 (1) |
H(11)—C(1)—C(2)—H(21) | 145.5 (8) | C(10)—C(11)—C(12)—N(2) | 179.8 (1) |
H(11)—C(1)—C(2)—H(22) | 0.4 (8) | C(10)—C(11)—C(12)—C(17) | 2.4 (1) |
H(11)—C(1)—C(3)—C(2) | 108.3 (6) | N(2)—C(12)—C(17)—C(4) | −177.2 (1) |
H(11)—C(1)—C(3)—H(31) | −0.7 (8) | N(2)—C(12)—C(17)—H(171) | 6.0 (5) |
H(11)—C(1)—C(3)—H(32) | −144.8 (8) | C(11)—C(12)—C(17)—C(4) | 0.1 (1) |
C(1)—C(2)—C(3)—C(1) | 0.0 (1) | C(11)—C(12)—C(17)—H(171) | −176.8 (5) |
C(1)—C(2)—C(3)—H(31) | 107.1 (6) | N(2)—C(13)—C(14)—H(141) | 175.7 (6) |
C(1)—C(2)—C(3)—H(32) | −105.8 (6) | N(2)—C(13)—C(14)—H(142) | −63.4 (5) |
H(21)—C(2)—C(3)—C(1) | 106.2 (6) | H(131)—C(13)—C(14)—H(141) | −67.7 (7) |
H(21)—C(2)—C(3)—H(31) | −146.6 (8) | H(131)—C(13)—C(14)—H(142) | 53.2 (7) |
H(21)—C(2)—C(3)—H(32) | 0.4 (8) | H(132)—C(13)—C(14)—H(141) | 51.3 (7) |
H(22)—C(2)—C(3)—C(1) | −104.2 (6) | H(132)—C(13)—C(14)—H(142) | 172.2 (7) |
H(22)—C(2)—C(3)—H(31) | 2.9 (9) | H(151)—C(15)—C(16)—H(161) | 177.2 (7) |
H(22)—C(2)—C(3)—H(32) | 150.0 (8) | H(151)—C(15)—C(16)—H(162) | −61.7 (8) |
N(1)—C(4)—C(9)—C(8) | 1.2 (1) | H(152)—C(15)—C(16)—H(161) | −58.9 (8) |
N(1)—C(4)—C(9)—C(10) | −177.4 (1) | H(152)—C(15)—C(16)—H(162) | 62.2 (8) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N(3)—H(311)···O(51)i | 1.03 (1) | 2.53 (1) | 3.0458 (8) | 110 (1) |
N(3)—H(311)···O(41)ii | 1.03 (1) | 1.98 (1) | 2.8063 (7) | 136 (1) |
N(3)—H(312)···O(91) | 1.02 (1) | 1.81 (1) | 2.8153 (7) | 165 (1) |
O(41)—H(412)···O(1) | 0.96 (1) | 1.85 (1) | 2.8064 (6) | 175 (1) |
O(41)—H(411)···O(81)iii | 0.93 (1) | 1.89 (1) | 2.8055 (8) | 168 (1) |
O(51)—H(511)···O(81)iii | 0.96 (1) | 1.87 (1) | 2.8032 (8) | 163 (1) |
O(51)—H(512)···O(1) | 0.90 (1) | 1.94 (1) | 2.8265 (7) | 167 (1) |
O(61)—H(611)···O(71)iv | 0.95 (1) | 1.87 (1) | 2.8150 (8) | 172 (1) |
O(61)—H(612)···O(71)v | 0.97 (1) | 1.93 (1) | 2.8842 (8) | 168 (1) |
O(71)—H(711)···O(2) | 0.94 (1) | 2.04 (1) | 2.8392 (7) | 141 (1) |
O(71)—H(711)···O(3) | 0.94 (1) | 2.30 (1) | 3.0702 (7) | 138 (1) |
O(71)—H(712)···O(51)vi | 0.92 (1) | 1.92 (1) | 2.8272 (8) | 166 (1) |
O(81)—H(811)···O(2)vii | 0.90 (1) | 2.05 (1) | 2.8624 (7) | 149 (1) |
O(81)—H(811)···O(3)vii | 0.90 (1) | 2.50 (1) | 3.1874 (7) | 133 (1) |
O(81)—H(812)···O(3) | 0.95 (1) | 1.76 (1) | 2.7104 (7) | 172 (1) |
O(91)—H(911)···O(61) | 0.92 (1) | 1.91 (1) | 2.8085 (7) | 168 (1) |
O(91)—H(912)···O(2)v | 0.94 (1) | 1.79 (1) | 2.7102 (6) | 164 (1) |
Symmetry codes: (i) x−1, y−1, z−1; (ii) −x, −y, −z+1; (iii) x+1, y, z; (iv) x, y−1, z−1; (v) −x, −y+1, −z+1; (vi) x−1, y, z; (vii) −x, −y+1, −z+2. |
Experimental details
Crystal data |
Chemical formula | C17H18FN3O3·6H2O |
Mr | 439.44 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 9.5079 (3), 9.9437 (3), 11.0391 (3) |
α, β, γ (°) | 94.227 (2), 100.206 (2), 91.327 (2) |
V (Å3) | 1023.66 (6) |
Z | 2.0 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.30 × 0.25 × 0.03 |
|
Data collection |
Diffractometer | Bruker APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.918, 0.996 |
No. of measured, independent and observed [F > 3σ(F)] reflections | 35927, 7766, 6705 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.769 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.024, 0.032, 2.09 |
No. of reflections | 6705 |
No. of parameters | 391 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.22, −0.29 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N(3)—H(311)···O(51)i | 1.025 (10) | 2.533 (10) | 3.0458 (8) | 110.4 (7) |
N(3)—H(311)···O(41)ii | 1.025 (10) | 1.979 (10) | 2.8063 (7) | 135.8 (9) |
N(3)—H(312)···O(91) | 1.024 (9) | 1.814 (9) | 2.8153 (7) | 164.6 (8) |
O(41)—H(412)···O(1) | 0.964 (10) | 1.845 (10) | 2.8064 (6) | 175.2 (9) |
O(41)—H(411)···O(81)iii | 0.932 (10) | 1.887 (10) | 2.8055 (8) | 168.0 (9) |
O(51)—H(511)···O(81)iii | 0.962 (10) | 1.868 (10) | 2.8032 (8) | 163.4 (9) |
O(51)—H(512)···O(1) | 0.902 (10) | 1.941 (10) | 2.8265 (7) | 167.1 (9) |
O(61)—H(611)···O(71)iv | 0.953 (10) | 1.869 (10) | 2.8150 (8) | 171.6 (9) |
O(61)—H(612)···O(71)v | 0.972 (10) | 1.927 (11) | 2.8842 (8) | 167.8 (9) |
O(71)—H(711)···O(2) | 0.944 (10) | 2.044 (10) | 2.8392 (7) | 140.8 (8) |
O(71)—H(711)···O(3) | 0.944 (10) | 2.302 (10) | 3.0702 (7) | 138.1 (8) |
O(71)—H(712)···O(51)vi | 0.923 (10) | 1.922 (10) | 2.8272 (8) | 166.2 (9) |
O(81)—H(811)···O(2)vii | 0.902 (11) | 2.050 (10) | 2.8624 (7) | 149.1 (9) |
O(81)—H(811)···O(3)vii | 0.902 (11) | 2.504 (10) | 3.1874 (7) | 132.9 (8) |
O(81)—H(812)···O(3) | 0.953 (10) | 1.764 (10) | 2.7104 (7) | 171.8 (9) |
O(91)—H(911)···O(61) | 0.917 (10) | 1.906 (10) | 2.8085 (7) | 167.9 (9) |
O(91)—H(912)···O(2)v | 0.942 (10) | 1.791 (10) | 2.7102 (6) | 164.1 (8) |
Symmetry codes: (i) x−1, y−1, z−1; (ii) −x, −y, −z+1; (iii) x+1, y, z; (iv) x, y−1, z−1; (v) −x, −y+1, −z+1; (vi) x−1, y, z; (vii) −x, −y+1, −z+2. |
Invarioms and model compounds used for aspherical refinement of the title
compound topAtom label | Invariom assigned | Model compound |
F1 | F1c | fluoromethane |
O1, O2, O3 | O1.5c[1.5o1c]- | acetic acid anion |
O41–O91 | O1h1h | water |
N1, N2 | N1c1c1c | trimethylamine |
N3 | N1c1c1h1h+ | N,N-dimethylammonium |
C1 | C1n1c1c1h | 2-aminopropane |
C2, C3 | C1c1c1h1h | propane |
C4 | C1.5c[1.5c1c]1.5c[1.5c1h]1n | o-methylaniline |
C5 | C1.5n[1.5c1c]1.5c[1.5c1c]1h+ | N-methyl-3-methylpyridinium |
C6 | C1.5c[1.5n1h]1.5c[1.5c1o]1c+ | 3-methyl-4-hydroxypyridinium |
C7 | C1.5o1.5o1c- | acetic acid anion |
C8 | C2o1c1c | acetone |
C9 | C1.5c[1.5c1n]1.5c[1.5c1h]1c | o-methylaniline |
C10 | C1.5c[1.5c1f]1.5c[1.5c1c]1h | 1-fluoro-3-methylbenzene |
C11 | C1.5c[1.5c1n]1.5c[1.5c1h]1f | 2-fluoroaniline |
C12 | C1.5c[1.5c1f]1.5c[1.5c1h]1n | 2-fluoroaniline |
C13–C16 | C1n1c1h1h | aminoethane |
C17 | C1.5c[1.5c1n]1.5c[1.5c1n]1h | m-phenylenediamine |
H312, H322 | H1n[1c1c1h]+ | dimethylammonium |
H11 | H1c[1n1c1c] | 2-aminopropane |
H21–H32 | H1c[1c1c1h] | propane |
H51 | H1c[1.5n1.5c] | pyridine |
H101, H171 | H1c[1.5c1.5c] | benzene |
H131–H162 | H1c[1n1c1h] | aminoethane |
H411–H912 | H1o[1h] | water |
The title compound, commonly known as ciprofloxacin hexahydrate, belongs to the quinolone family of synthetic antibiotics (Turel, 2002; Mitscher, 2005). In this study, the structure of ciprofloxacin hexahydrate (Fig. 1), has been redetermined at 120 K using a 30 W microfocus Mo sealed tube. An invariom refinement (Dittrich et al., 2005), a structural refinement using aspherical scattering factors from theoretically predicted multipole population parameters, yields accurate ADPs and molecular geometries, including hydrogen-bonding parameters. All primary bond lengths and angles are in good agreement with those of the previously reported room-temperature structure (Turel et al.,1997), but are more precise. The crystal structure exhibits an intricate 3-D hydrogen-bonding pattern. All potential hydrogen-bond donors and acceptors are involved in hydrogen bonding: water O41, O61 and O91 accept one hydrogen bond; O51, O71, O81 and carboxyl O1 accept two; both carboxyl O2 and carbonyl O3 accept three. The majority of hydrogen bonds are linear; N3—H311, O71—H711 and O8—H811 form bifurcated ones.