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The structure of the title compound, C17H18FN3O3·6H2O, has been redetermined at 120 K. An invariom refinement, a structural refinement using aspherical scattering factors from theoretically predicted multipole population parameters, yields accurate geometry and anisotropic displacement parameters, including hydrogen-bonding parameters. All potential hydrogen-bond donors and acceptors are involved in hydrogen bonding, forming an intricate three-dimensional network of N—H...O and O—H...O bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808037409/bi2314sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536808037409/bi2314Isup2.hkl
Contains datablock I

CCDC reference: 712460

Key indicators

  • Single-crystal X-ray study
  • T = 120 K
  • Mean [sigma](C-C) = 0.001 Å
  • R factor = 0.024
  • wR factor = 0.032
  • Data-to-parameter ratio = 17.1

checkCIF/PLATON results

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Alert level A DIFF020_ALERT_1_A _diffrn_standards_interval_count and _diffrn_standards_interval_time are missing. Number of measurements between standards or time (min) between standards. DIFF022_ALERT_1_A _diffrn_standards_decay_% is missing Percentage decrease in standards intensity.
Alert level C Value of measurement temperature given = 120.000 Value of melting point given = 0.000 GOODF01_ALERT_2_C The least squares goodness of fit parameter lies outside the range 0.80 <> 2.00 Goodness of fit given = 2.089 PLAT087_ALERT_2_C Unsatisfactory S value (Too High) .............. 2.09 PLAT353_ALERT_3_C Long N-H Bond (0.87A) N3 - H311 ... 1.02 Ang. PLAT353_ALERT_3_C Long N-H Bond (0.87A) N3 - H312 ... 1.02 Ang. PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ? PLAT153_ALERT_1_C The su's on the Cell Axes are Equal (x 100000) 30 Ang. PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 200 Deg. PLAT703_ALERT_1_C Torsion Calc 153.24(5), Rep 153.30(10), Dev.. 1.20 Sigma C(8)-C(6)-C(7)-O(1) 1.555 1.555 1.555 1.555 PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 4 H2 O PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 6 H2 O PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 7 H2 O
2 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 11 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 6 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Comment top

The title compound, commonly known as ciprofloxacin hexahydrate, belongs to the quinolone family of synthetic antibiotics (Turel, 2002; Mitscher, 2005). In this study, the structure of ciprofloxacin hexahydrate (Fig. 1), has been redetermined at 120 K using a 30 W microfocus Mo sealed tube. An invariom refinement (Dittrich et al., 2005), a structural refinement using aspherical scattering factors from theoretically predicted multipole population parameters, yields accurate ADPs and molecular geometries, including hydrogen-bonding parameters. All primary bond lengths and angles are in good agreement with those of the previously reported room-temperature structure (Turel et al.,1997), but are more precise. The crystal structure exhibits an intricate 3-D hydrogen-bonding pattern. All potential hydrogen-bond donors and acceptors are involved in hydrogen bonding: water O41, O61 and O91 accept one hydrogen bond; O51, O71, O81 and carboxyl O1 accept two; both carboxyl O2 and carbonyl O3 accept three. The majority of hydrogen bonds are linear; N3—H311, O71—H711 and O8—H811 form bifurcated ones.

Related literature top

For related literature on the invariom refinement procedure, see: Dittrich et al. (2005); Hübschle et al. (2007); Hansen & Coppens (1978). For the original structure determination and background information on quinolone antibacterial agents, see: Turel et al. (1997); Turel (2002); Mitscher (2005).

Experimental top

Ciprofloxacin (Sigma Aldrich) was used as received. Single crystals suitable for X-ray measurements were obtained by recrystallization from water by slow evaporation at room temperature.

Refinement top

The refinement was initiated with the original structure determined at ambient temperature by Turel et al. (1997) (CSD refcode COVPIN). We note that the numbering scheme in the original paper differs from that of the deposited structure. We used the same numbering scheme as in COVPIN. We also note that although the original paper reports refined H atom positions, these are not present in the deposited structure. An Independent Atom Model (IAM) refinement with CRYSTALS (Betteridge et al., 2003) provided starting values for subsequent invariom refinement (Dittrich et al., 2005), which is based on the Hansen & Coppens multipole formalism (Hansen & Coppens, 1978). This non-spherical atom refinement, which included reflections with [F > 3 σ(F)], was performed with XDLSM as included in the XD package (Koritsánszky et al., 2003). XD input files were processed with the program InvariomTool (Hübschle et al., 2007). For invariom refinement, non-spherical valence scattering contributions for atoms in an environment of simple bonds were obtained from theoretical calculations on model compounds that included nearest-neighbour atoms, whereas for H-atoms and atoms in a delocalized chemical environment, model compounds also included the next-nearest neighbour atoms (see table in the Supplementary Information). Full details for the general invariom modelling procedure of organic molecules can be found in Hübschle et al. (2007). Since in the invariom refinement the multipole parameters are fixed at theoretically predicted values, only the positional and displacement parameters were refined. Bond distances to H-atoms were freely refined due to the high quality of the data set, but can optionally be set to the values found in the model compounds, which are very close to those obtained from neutron diffraction.

Computing details top

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: from known coordinates (Turel et al., 1997); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003) and XD (Koritsánszky et al., 2003); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: XDCIF (Koritsánszky et al., 2003) and publCIF (Westrip, 2008).

Figures top
[Figure 1] Fig. 1. The title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as spheres of arbitrary radius.
1-cyclopropyl-6-fluoro-4-oxo-7-(piperazin-4-ium-1-yl)-1,4-dihydroquinoline- 3-carboxylate hexahydrate top
Crystal data top
C17H18FN3O3·6H2OZ = 2.0
Mr = 439.44F(000) = 468
Triclinic, P1Dx = 1.426 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.5079 (3) ÅCell parameters from 9906 reflections
b = 9.9437 (3) Åθ = 2.6–35.8°
c = 11.0391 (3) ŵ = 0.12 mm1
α = 94.227 (2)°T = 120 K
β = 100.206 (2)°Plate, colourless
γ = 91.327 (2)°0.30 × 0.25 × 0.03 mm
V = 1023.66 (6) Å3
Data collection top
Bruker APEXII
diffractometer
7766 independent reflections
Radiation source: Mo microsource6705 reflections with F > 3σ(F)
Graphite monochromatorRint = 0.037
ω scansθmax = 33.1°, θmin = 2.1°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1414
Tmin = 0.918, Tmax = 0.996k = 1515
35927 measured reflectionsl = 016
Refinement top
Refinement on FPrimary atom site location: none
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: difference Fourier map
wR(F2) = 0.032All H-atom parameters refined
S = 2.09 w1 = 1/[s2(Fo)]
6705 reflections(Δ/σ)max < 0.001
391 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = 0.29 e Å3
Crystal data top
C17H18FN3O3·6H2Oγ = 91.327 (2)°
Mr = 439.44V = 1023.66 (6) Å3
Triclinic, P1Z = 2.0
a = 9.5079 (3) ÅMo Kα radiation
b = 9.9437 (3) ŵ = 0.12 mm1
c = 11.0391 (3) ÅT = 120 K
α = 94.227 (2)°0.30 × 0.25 × 0.03 mm
β = 100.206 (2)°
Data collection top
Bruker APEXII
diffractometer
7766 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
6705 reflections with F > 3σ(F)
Tmin = 0.918, Tmax = 0.996Rint = 0.037
35927 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0240 restraints
wR(F2) = 0.032All H-atom parameters refined
S = 2.09Δρmax = 0.22 e Å3
6705 reflectionsΔρmin = 0.29 e Å3
391 parameters
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
F(1)0.33045 (4)0.12852 (4)0.58299 (3)0.017
O(1)0.40535 (4)0.62476 (4)0.78894 (4)0.016
O(2)0.20874 (4)0.70663 (4)0.84664 (4)0.017
O(3)0.01084 (5)0.50635 (4)0.80861 (4)0.018
O(41)0.51207 (6)0.36492 (5)0.80865 (6)0.032
O(51)0.67335 (6)0.70056 (6)0.93720 (5)0.026
O(61)0.12179 (6)0.06543 (6)0.12561 (5)0.028
O(71)0.05227 (6)0.79577 (5)0.91011 (5)0.027
O(81)0.21443 (5)0.44232 (6)0.94044 (5)0.024
O(91)0.35014 (5)0.08636 (5)0.00415 (4)0.017
N(1)0.17346 (5)0.36898 (5)0.51490 (4)0.011
N(2)0.22506 (5)0.04178 (5)0.37452 (4)0.011
N(3)0.37382 (5)0.12031 (5)0.16130 (5)0.012
C(1)0.23877 (6)0.33110 (6)0.40859 (5)0.012
C(2)0.39731 (6)0.31298 (7)0.42941 (6)0.018
C(3)0.29514 (6)0.19203 (6)0.39590 (6)0.016
C(4)0.04233 (5)0.31170 (5)0.52812 (5)0.01
C(5)0.23769 (6)0.46656 (5)0.59958 (5)0.011
C(6)0.18357 (6)0.51677 (5)0.70044 (5)0.011
C(7)0.27219 (6)0.62394 (5)0.78547 (5)0.012
C(8)0.04741 (6)0.46515 (6)0.72033 (5)0.012
C(9)0.02011 (5)0.35741 (5)0.62955 (5)0.01
C(10)0.14985 (6)0.29436 (6)0.64428 (5)0.012
C(11)0.21170 (6)0.19255 (6)0.56113 (5)0.012
C(12)0.15499 (6)0.14755 (5)0.45515 (5)0.011
C(13)0.14735 (6)0.01330 (6)0.27971 (5)0.012
C(14)0.22196 (6)0.14286 (6)0.21485 (5)0.013
C(15)0.44960 (6)0.06561 (6)0.26046 (5)0.013
C(16)0.37577 (6)0.06451 (6)0.32136 (5)0.012
C(17)0.02664 (6)0.20945 (5)0.44071 (5)0.011
H(311)0.4250 (10)0.2100 (10)0.1250 (10)0.043 (3)
H(312)0.3779 (9)0.0550 (9)0.0933 (9)0.027 (2)
H(11)0.1918 (9)0.3733 (8)0.3296 (8)0.029 (2)
H(21)0.4516 (9)0.3257 (8)0.5233 (8)0.029 (2)
H(22)0.4485 (9)0.3462 (9)0.3602 (9)0.037 (2)
H(31)0.2831 (9)0.1433 (9)0.3068 (9)0.033 (2)
H(32)0.2849 (9)0.1304 (9)0.4675 (8)0.035 (2)
H(51)0.3399 (9)0.5067 (9)0.5852 (7)0.028 (2)
H(101)0.1957 (9)0.3228 (9)0.7198 (8)0.031 (2)
H(131)0.0424 (9)0.0394 (9)0.3266 (8)0.029 (2)
H(132)0.1367 (9)0.0571 (9)0.2100 (8)0.028 (2)
H(141)0.1715 (9)0.1792 (9)0.1422 (8)0.030 (2)
H(142)0.2228 (9)0.2200 (9)0.2761 (8)0.028 (2)
H(151)0.4442 (9)0.1406 (9)0.3245 (8)0.034 (2)
H(152)0.5590 (10)0.0490 (10)0.2190 (10)0.039 (2)
H(161)0.3774 (9)0.1389 (9)0.2537 (8)0.030 (2)
H(162)0.4302 (9)0.0975 (8)0.3918 (8)0.031 (2)
H(171)0.0170 (8)0.1819 (8)0.3589 (8)0.022 (2)
H(411)0.6040 (10)0.3780 (10)0.8550 (10)0.039 (3)
H(412)0.4720 (10)0.4530 (10)0.8050 (10)0.041 (3)
H(511)0.7020 (10)0.6100 (10)0.9510 (10)0.041 (3)
H(512)0.5850 (10)0.6900 (10)0.8910 (10)0.039 (3)
H(611)0.0920 (10)0.0250 (10)0.1190 (10)0.043 (3)
H(612)0.0550 (10)0.1170 (10)0.0610 (10)0.047 (3)
H(711)0.0040 (10)0.7320 (10)0.8750 (10)0.049 (3)
H(712)0.1410 (10)0.7550 (10)0.9080 (10)0.045 (3)
H(811)0.1790 (10)0.4090 (10)1.0130 (10)0.044 (3)
H(812)0.1370 (10)0.4600 (10)0.8990 (10)0.040 (3)
H(911)0.2840 (10)0.0710 (10)0.0460 (10)0.032 (3)
H(912)0.3176 (9)0.1646 (10)0.0559 (9)0.031 (2)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
F(1)0.0139 (2)0.0189 (2)0.0175 (2)0.00660 (10)0.00720 (10)0.00390 (10)
O(1)0.0106 (2)0.0146 (2)0.0204 (2)0.00230 (10)0.0016 (2)0.0033 (2)
O(2)0.0155 (2)0.0133 (2)0.0198 (2)0.0025 (2)0.0049 (2)0.0062 (2)
O(3)0.0158 (2)0.0208 (2)0.0180 (2)0.0067 (2)0.0095 (2)0.0096 (2)
O(41)0.0217 (2)0.0143 (2)0.0567 (4)0.0022 (2)0.0038 (2)0.0000 (2)
O(51)0.0192 (2)0.0240 (3)0.0313 (3)0.0029 (2)0.0015 (2)0.0065 (2)
O(61)0.0268 (3)0.0282 (3)0.0281 (3)0.0032 (2)0.0103 (2)0.0013 (2)
O(71)0.0217 (2)0.0201 (2)0.0372 (3)0.0010 (2)0.0076 (2)0.0060 (2)
O(81)0.0186 (2)0.0314 (3)0.0240 (3)0.0036 (2)0.0081 (2)0.0086 (2)
O(91)0.0157 (2)0.0172 (2)0.0161 (2)0.0035 (2)0.0008 (2)0.0002 (2)
N(1)0.0100 (2)0.0119 (2)0.0094 (2)0.0008 (2)0.0026 (2)0.0000 (2)
N(2)0.0087 (2)0.0111 (2)0.0125 (2)0.0006 (2)0.0021 (2)0.0019 (2)
N(3)0.0105 (2)0.0127 (2)0.0129 (2)0.0005 (2)0.0007 (2)0.0020 (2)
C(1)0.0107 (2)0.0133 (2)0.0121 (2)0.0001 (2)0.0039 (2)0.0003 (2)
C(2)0.0110 (2)0.0197 (3)0.0217 (3)0.0010 (2)0.0069 (2)0.0033 (2)
C(3)0.0140 (2)0.0145 (3)0.0196 (3)0.0016 (2)0.0053 (2)0.0019 (2)
C(4)0.0087 (2)0.0105 (2)0.0107 (2)0.0005 (2)0.0023 (2)0.0009 (2)
C(5)0.0095 (2)0.0107 (2)0.0133 (2)0.0014 (2)0.0028 (2)0.0007 (2)
C(6)0.0097 (2)0.0102 (2)0.0123 (2)0.0016 (2)0.0026 (2)0.0019 (2)
C(7)0.0108 (2)0.0099 (2)0.0134 (2)0.0012 (2)0.0022 (2)0.0012 (2)
C(8)0.0105 (2)0.0117 (2)0.0119 (2)0.0011 (2)0.0033 (2)0.0032 (2)
C(9)0.0092 (2)0.0106 (2)0.0111 (2)0.0010 (2)0.0024 (2)0.0019 (2)
C(10)0.0101 (2)0.0139 (2)0.0130 (2)0.0022 (2)0.0045 (2)0.0028 (2)
C(11)0.0100 (2)0.0133 (2)0.0127 (2)0.0022 (2)0.0041 (2)0.0018 (2)
C(12)0.0089 (2)0.0109 (2)0.0112 (2)0.0006 (2)0.0025 (2)0.0016 (2)
C(13)0.0092 (2)0.0122 (2)0.0137 (2)0.0001 (2)0.0026 (2)0.0025 (2)
C(14)0.0111 (2)0.0114 (2)0.0153 (3)0.0009 (2)0.0006 (2)0.0022 (2)
C(15)0.0096 (2)0.0145 (3)0.0136 (2)0.0019 (2)0.0020 (2)0.0016 (2)
C(16)0.0090 (2)0.0121 (2)0.0146 (3)0.0007 (2)0.0016 (2)0.0018 (2)
C(17)0.0090 (2)0.0111 (2)0.0118 (2)0.0013 (2)0.0019 (2)0.0016 (2)
Geometric parameters (Å, º) top
F(1)—C(11)1.3504 (6)C(2)—C(3)1.5098 (9)
O(1)—C(7)1.2595 (7)C(2)—H(21)1.070 (9)
O(2)—C(7)1.2577 (7)C(2)—H(22)1.045 (10)
O(3)—C(8)1.2520 (7)C(3)—H(31)1.050 (9)
O(41)—H(411)0.931 (11)C(3)—H(32)1.051 (9)
O(41)—H(412)0.965 (11)C(4)—C(9)1.4093 (8)
O(51)—H(511)0.957 (11)C(4)—C(17)1.4125 (8)
O(51)—H(512)0.903 (11)C(5)—C(6)1.3738 (8)
O(61)—H(611)0.948 (12)C(5)—H(51)1.084 (9)
O(61)—H(612)0.969 (12)C(6)—C(7)1.5023 (8)
O(71)—H(711)0.941 (12)C(6)—C(8)1.4400 (7)
O(71)—H(712)0.922 (11)C(8)—C(9)1.4650 (8)
O(81)—H(811)0.904 (11)C(9)—C(10)1.4110 (7)
O(81)—H(812)0.952 (11)C(10)—C(11)1.3629 (8)
O(91)—H(911)0.919 (10)C(10)—H(101)1.031 (9)
O(91)—H(912)0.943 (10)C(11)—C(12)1.4205 (8)
N(1)—C(1)1.4523 (7)C(12)—C(17)1.3933 (7)
N(1)—C(4)1.3940 (7)C(13)—C(14)1.5222 (8)
N(1)—C(5)1.3509 (7)C(13)—H(131)1.086 (9)
N(2)—C(12)1.4006 (7)C(13)—H(132)1.094 (9)
N(2)—C(13)1.4663 (7)C(14)—H(141)1.052 (9)
N(3)—H(311)1.026 (12)C(14)—H(142)1.060 (9)
N(3)—H(312)1.025 (10)C(15)—C(16)1.5103 (8)
N(2)—C(16)1.4782 (7)C(15)—H(151)1.061 (9)
N(3)—C(14)1.4889 (7)C(15)—H(152)1.084 (10)
N(3)—C(15)1.4910 (8)C(16)—H(161)1.087 (9)
C(1)—C(2)1.5010 (8)C(16)—H(162)1.046 (9)
C(1)—C(3)1.5004 (8)C(17)—H(171)1.079 (8)
C(1)—H(11)1.030 (9)
H(411)—O(41)—H(412)105.7 (8)O(3)—C(8)—C(9)121.14 (5)
H(511)—O(51)—H(512)104.1 (8)C(6)—C(8)—C(9)115.11 (5)
H(611)—O(61)—H(612)103.5 (8)C(4)—C(9)—C(8)121.95 (5)
H(711)—O(71)—H(712)107.6 (8)C(4)—C(9)—C(10)118.27 (5)
H(811)—O(81)—H(812)108.2 (8)C(8)—C(9)—C(10)119.77 (5)
H(911)—O(91)—H(912)106.5 (7)C(9)—C(10)—C(11)119.92 (5)
C(1)—N(1)—C(4)121.37 (5)C(9)—C(10)—H(101)120.0 (5)
C(1)—N(1)—C(5)119.24 (4)C(11)—C(10)—H(101)120.1 (5)
C(4)—N(1)—C(5)119.30 (5)F(1)—C(11)—C(10)118.14 (5)
C(12)—N(2)—C(13)116.04 (4)F(1)—C(11)—C(12)118.45 (5)
H(311)—N(3)—H(312)109.3 (7)C(10)—C(11)—C(12)123.38 (5)
N(1)—C(1)—C(2)118.16 (5)N(2)—C(12)—C(11)119.72 (5)
N(1)—C(1)—C(3)118.70 (5)N(2)—C(12)—C(17)123.50 (5)
N(1)—C(1)—H(11)113.4 (5)C(11)—C(12)—C(17)116.72 (5)
C(2)—C(1)—C(3)60.40 (4)N(2)—C(13)—C(14)110.41 (4)
C(2)—C(1)—H(11)118.3 (5)N(2)—C(13)—H(131)107.3 (4)
C(3)—C(1)—H(11)118.1 (5)N(2)—C(13)—H(132)113.1 (4)
C(1)—C(2)—C(3)59.78 (4)C(14)—C(13)—H(131)107.3 (4)
C(1)—C(2)—H(21)116.0 (4)C(14)—C(13)—H(132)108.5 (4)
C(1)—C(2)—H(22)114.8 (5)H(131)—C(13)—H(132)110.1 (6)
C(3)—C(2)—H(21)116.1 (4)C(13)—C(14)—H(141)111.0 (5)
C(3)—C(2)—H(22)117.3 (5)C(13)—C(14)—H(142)112.0 (4)
H(21)—C(2)—H(22)119.0 (6)H(141)—C(14)—H(142)108.1 (6)
C(1)—C(3)—C(2)59.82 (4)N(3)—C(14)—C(13)111.14 (5)
C(1)—C(3)—H(31)117.8 (5)N(3)—C(14)—H(141)107.5 (4)
C(1)—C(3)—H(32)115.7 (5)N(3)—C(14)—H(142)106.9 (4)
C(2)—C(3)—H(31)118.9 (5)N(3)—C(15)—C(16)109.86 (5)
C(2)—C(3)—H(32)116.4 (5)N(3)—C(15)—H(151)105.8 (5)
H(31)—C(3)—H(32)116.3 (7)N(3)—C(15)—H(152)108.2 (5)
N(1)—C(4)—C(9)119.07 (5)C(16)—C(15)—H(151)110.8 (5)
N(1)—C(4)—C(17)120.24 (5)C(16)—C(15)—H(152)111.0 (5)
C(9)—C(4)—C(17)120.69 (5)H(151)—C(15)—H(152)111.1 (7)
N(1)—C(5)—C(6)125.09 (5)N(2)—C(16)—C(15)110.46 (5)
N(1)—C(5)—H(51)116.1 (4)N(2)—C(16)—H(161)108.3 (4)
C(6)—C(5)—H(51)118.8 (4)N(2)—C(16)—H(162)109.6 (5)
C(5)—C(6)—C(7)117.23 (5)C(15)—C(16)—H(161)110.0 (4)
C(5)—C(6)—C(8)119.45 (5)C(15)—C(16)—H(162)107.3 (5)
C(7)—C(6)—C(8)123.32 (5)H(161)—C(16)—H(162)111.2 (6)
O(1)—C(7)—O(2)124.85 (5)C(4)—C(17)—C(12)120.94 (5)
O(1)—C(7)—C(6)117.03 (5)C(4)—C(17)—H(171)120.0 (4)
O(2)—C(7)—C(6)118.12 (5)C(12)—C(17)—H(171)119.0 (4)
O(3)—C(8)—C(6)123.75 (5)
C(4)—N(1)—C(1)—C(2)139.1 (1)N(1)—C(4)—C(17)—C(12)177.5 (1)
C(4)—N(1)—C(1)—C(3)69.3 (1)N(1)—C(4)—C(17)—H(171)5.7 (5)
C(1)—N(1)—C(4)—C(9)176.5 (1)C(17)—C(4)—C(9)—C(8)178.7 (1)
C(1)—N(1)—C(4)—C(17)3.4 (1)C(17)—C(4)—C(9)—C(10)2.7 (1)
C(4)—N(1)—C(1)—H(11)76.0 (6)C(9)—C(4)—C(17)—C(12)2.6 (1)
C(5)—N(1)—C(1)—C(2)44.2 (1)C(9)—C(4)—C(17)—H(171)174.2 (5)
C(5)—N(1)—C(1)—C(3)114.0 (1)N(1)—C(5)—C(6)—C(7)179.0 (1)
C(1)—N(1)—C(5)—C(6)176.3 (1)N(1)—C(5)—C(6)—C(8)0.6 (1)
C(5)—N(1)—C(1)—H(11)100.6 (6)H(51)—C(5)—C(6)—C(7)0.8 (6)
C(1)—N(1)—C(5)—H(51)3.9 (6)H(51)—C(5)—C(6)—C(8)179.5 (6)
C(4)—N(1)—C(5)—C(6)0.4 (1)C(5)—C(6)—C(7)—O(1)26.4 (1)
C(5)—N(1)—C(4)—C(9)0.1 (1)C(5)—C(6)—C(7)—O(2)152.9 (1)
C(5)—N(1)—C(4)—C(17)179.9 (1)C(5)—C(6)—C(8)—O(3)178.9 (1)
C(4)—N(1)—C(5)—H(51)179.4 (6)C(5)—C(6)—C(8)—C(9)1.8 (1)
C(13)—N(2)—C(12)—C(11)170.1 (1)C(8)—C(6)—C(7)—O(1)153.3 (1)
C(12)—N(2)—C(13)—C(14)169.4 (1)C(8)—C(6)—C(7)—O(2)27.5 (1)
C(13)—N(2)—C(12)—C(17)7.0 (1)C(7)—C(6)—C(8)—O(3)1.4 (1)
C(12)—N(2)—C(13)—H(131)52.8 (5)C(7)—C(6)—C(8)—C(9)177.9 (1)
C(12)—N(2)—C(13)—H(132)68.8 (5)O(3)—C(8)—C(9)—C(4)178.6 (1)
N(1)—C(1)—C(2)—C(3)108.8 (1)O(3)—C(8)—C(9)—C(10)2.9 (1)
N(1)—C(1)—C(2)—H(21)2.4 (6)C(6)—C(8)—C(9)—C(4)2.1 (1)
N(1)—C(1)—C(2)—H(22)142.7 (6)C(6)—C(8)—C(9)—C(10)176.4 (1)
N(1)—C(1)—C(3)—C(2)107.9 (1)C(4)—C(9)—C(10)—C(11)0.3 (1)
N(1)—C(1)—C(3)—H(31)143.1 (6)C(4)—C(9)—C(10)—H(101)177.3 (6)
N(1)—C(1)—C(3)—H(32)1.1 (6)C(8)—C(9)—C(10)—C(11)178.9 (1)
C(2)—C(1)—C(3)—C(2)0.0 (1)C(8)—C(9)—C(10)—H(101)1.3 (6)
C(3)—C(1)—C(2)—C(3)0.0 (1)C(9)—C(10)—C(11)—F(1)175.5 (1)
C(3)—C(1)—C(2)—H(21)106.5 (6)C(9)—C(10)—C(11)—C(12)2.3 (1)
C(3)—C(1)—C(2)—H(22)108.4 (6)H(101)—C(10)—C(11)—F(1)2.1 (6)
C(2)—C(1)—C(3)—H(31)109.0 (6)H(101)—C(10)—C(11)—C(12)179.9 (6)
C(2)—C(1)—C(3)—H(32)106.9 (6)F(1)—C(11)—C(12)—N(2)1.9 (1)
H(11)—C(1)—C(2)—C(3)108.1 (6)F(1)—C(11)—C(12)—C(17)175.4 (1)
H(11)—C(1)—C(2)—H(21)145.5 (8)C(10)—C(11)—C(12)—N(2)179.8 (1)
H(11)—C(1)—C(2)—H(22)0.4 (8)C(10)—C(11)—C(12)—C(17)2.4 (1)
H(11)—C(1)—C(3)—C(2)108.3 (6)N(2)—C(12)—C(17)—C(4)177.2 (1)
H(11)—C(1)—C(3)—H(31)0.7 (8)N(2)—C(12)—C(17)—H(171)6.0 (5)
H(11)—C(1)—C(3)—H(32)144.8 (8)C(11)—C(12)—C(17)—C(4)0.1 (1)
C(1)—C(2)—C(3)—C(1)0.0 (1)C(11)—C(12)—C(17)—H(171)176.8 (5)
C(1)—C(2)—C(3)—H(31)107.1 (6)N(2)—C(13)—C(14)—H(141)175.7 (6)
C(1)—C(2)—C(3)—H(32)105.8 (6)N(2)—C(13)—C(14)—H(142)63.4 (5)
H(21)—C(2)—C(3)—C(1)106.2 (6)H(131)—C(13)—C(14)—H(141)67.7 (7)
H(21)—C(2)—C(3)—H(31)146.6 (8)H(131)—C(13)—C(14)—H(142)53.2 (7)
H(21)—C(2)—C(3)—H(32)0.4 (8)H(132)—C(13)—C(14)—H(141)51.3 (7)
H(22)—C(2)—C(3)—C(1)104.2 (6)H(132)—C(13)—C(14)—H(142)172.2 (7)
H(22)—C(2)—C(3)—H(31)2.9 (9)H(151)—C(15)—C(16)—H(161)177.2 (7)
H(22)—C(2)—C(3)—H(32)150.0 (8)H(151)—C(15)—C(16)—H(162)61.7 (8)
N(1)—C(4)—C(9)—C(8)1.2 (1)H(152)—C(15)—C(16)—H(161)58.9 (8)
N(1)—C(4)—C(9)—C(10)177.4 (1)H(152)—C(15)—C(16)—H(162)62.2 (8)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N(3)—H(311)···O(51)i1.03 (1)2.53 (1)3.0458 (8)110 (1)
N(3)—H(311)···O(41)ii1.03 (1)1.98 (1)2.8063 (7)136 (1)
N(3)—H(312)···O(91)1.02 (1)1.81 (1)2.8153 (7)165 (1)
O(41)—H(412)···O(1)0.96 (1)1.85 (1)2.8064 (6)175 (1)
O(41)—H(411)···O(81)iii0.93 (1)1.89 (1)2.8055 (8)168 (1)
O(51)—H(511)···O(81)iii0.96 (1)1.87 (1)2.8032 (8)163 (1)
O(51)—H(512)···O(1)0.90 (1)1.94 (1)2.8265 (7)167 (1)
O(61)—H(611)···O(71)iv0.95 (1)1.87 (1)2.8150 (8)172 (1)
O(61)—H(612)···O(71)v0.97 (1)1.93 (1)2.8842 (8)168 (1)
O(71)—H(711)···O(2)0.94 (1)2.04 (1)2.8392 (7)141 (1)
O(71)—H(711)···O(3)0.94 (1)2.30 (1)3.0702 (7)138 (1)
O(71)—H(712)···O(51)vi0.92 (1)1.92 (1)2.8272 (8)166 (1)
O(81)—H(811)···O(2)vii0.90 (1)2.05 (1)2.8624 (7)149 (1)
O(81)—H(811)···O(3)vii0.90 (1)2.50 (1)3.1874 (7)133 (1)
O(81)—H(812)···O(3)0.95 (1)1.76 (1)2.7104 (7)172 (1)
O(91)—H(911)···O(61)0.92 (1)1.91 (1)2.8085 (7)168 (1)
O(91)—H(912)···O(2)v0.94 (1)1.79 (1)2.7102 (6)164 (1)
Symmetry codes: (i) x1, y1, z1; (ii) x, y, z+1; (iii) x+1, y, z; (iv) x, y1, z1; (v) x, y+1, z+1; (vi) x1, y, z; (vii) x, y+1, z+2.

Experimental details

Crystal data
Chemical formulaC17H18FN3O3·6H2O
Mr439.44
Crystal system, space groupTriclinic, P1
Temperature (K)120
a, b, c (Å)9.5079 (3), 9.9437 (3), 11.0391 (3)
α, β, γ (°)94.227 (2), 100.206 (2), 91.327 (2)
V3)1023.66 (6)
Z2.0
Radiation typeMo Kα
µ (mm1)0.12
Crystal size (mm)0.30 × 0.25 × 0.03
Data collection
DiffractometerBruker APEXII
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 1996)
Tmin, Tmax0.918, 0.996
No. of measured, independent and
observed [F > 3σ(F)] reflections
35927, 7766, 6705
Rint0.037
(sin θ/λ)max1)0.769
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.024, 0.032, 2.09
No. of reflections6705
No. of parameters391
H-atom treatmentAll H-atom parameters refined
Δρmax, Δρmin (e Å3)0.22, 0.29

Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), from known coordinates (Turel et al., 1997), CRYSTALS (Betteridge et al., 2003) and XD (Koritsánszky et al., 2003), ORTEPIII (Burnett & Johnson, 1996), XDCIF (Koritsánszky et al., 2003) and publCIF (Westrip, 2008).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N(3)—H(311)···O(51)i1.025 (10)2.533 (10)3.0458 (8)110.4 (7)
N(3)—H(311)···O(41)ii1.025 (10)1.979 (10)2.8063 (7)135.8 (9)
N(3)—H(312)···O(91)1.024 (9)1.814 (9)2.8153 (7)164.6 (8)
O(41)—H(412)···O(1)0.964 (10)1.845 (10)2.8064 (6)175.2 (9)
O(41)—H(411)···O(81)iii0.932 (10)1.887 (10)2.8055 (8)168.0 (9)
O(51)—H(511)···O(81)iii0.962 (10)1.868 (10)2.8032 (8)163.4 (9)
O(51)—H(512)···O(1)0.902 (10)1.941 (10)2.8265 (7)167.1 (9)
O(61)—H(611)···O(71)iv0.953 (10)1.869 (10)2.8150 (8)171.6 (9)
O(61)—H(612)···O(71)v0.972 (10)1.927 (11)2.8842 (8)167.8 (9)
O(71)—H(711)···O(2)0.944 (10)2.044 (10)2.8392 (7)140.8 (8)
O(71)—H(711)···O(3)0.944 (10)2.302 (10)3.0702 (7)138.1 (8)
O(71)—H(712)···O(51)vi0.923 (10)1.922 (10)2.8272 (8)166.2 (9)
O(81)—H(811)···O(2)vii0.902 (11)2.050 (10)2.8624 (7)149.1 (9)
O(81)—H(811)···O(3)vii0.902 (11)2.504 (10)3.1874 (7)132.9 (8)
O(81)—H(812)···O(3)0.953 (10)1.764 (10)2.7104 (7)171.8 (9)
O(91)—H(911)···O(61)0.917 (10)1.906 (10)2.8085 (7)167.9 (9)
O(91)—H(912)···O(2)v0.942 (10)1.791 (10)2.7102 (6)164.1 (8)
Symmetry codes: (i) x1, y1, z1; (ii) x, y, z+1; (iii) x+1, y, z; (iv) x, y1, z1; (v) x, y+1, z+1; (vi) x1, y, z; (vii) x, y+1, z+2.
Invarioms and model compounds used for aspherical refinement of the title compound top
Atom labelInvariom assignedModel compound
F1F1cfluoromethane
O1, O2, O3O1.5c[1.5o1c]-acetic acid anion
O41–O91O1h1hwater
N1, N2N1c1c1ctrimethylamine
N3N1c1c1h1h+N,N-dimethylammonium
C1C1n1c1c1h2-aminopropane
C2, C3C1c1c1h1hpropane
C4C1.5c[1.5c1c]1.5c[1.5c1h]1no-methylaniline
C5C1.5n[1.5c1c]1.5c[1.5c1c]1h+N-methyl-3-methylpyridinium
C6C1.5c[1.5n1h]1.5c[1.5c1o]1c+3-methyl-4-hydroxypyridinium
C7C1.5o1.5o1c-acetic acid anion
C8C2o1c1cacetone
C9C1.5c[1.5c1n]1.5c[1.5c1h]1co-methylaniline
C10C1.5c[1.5c1f]1.5c[1.5c1c]1h1-fluoro-3-methylbenzene
C11C1.5c[1.5c1n]1.5c[1.5c1h]1f2-fluoroaniline
C12C1.5c[1.5c1f]1.5c[1.5c1h]1n2-fluoroaniline
C13–C16C1n1c1h1haminoethane
C17C1.5c[1.5c1n]1.5c[1.5c1n]1hm-phenylenediamine
H312, H322H1n[1c1c1h]+dimethylammonium
H11H1c[1n1c1c]2-aminopropane
H21–H32H1c[1c1c1h]propane
H51H1c[1.5n1.5c]pyridine
H101, H171H1c[1.5c1.5c]benzene
H131–H162H1c[1n1c1h]aminoethane
H411–H912H1o[1h]water
 

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