

Acridinium (6-carboxypyridine-2-carboxylato)(pyridine-2,6-dicarboxylato)zincate(II) pentahydrate


Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536809011106/bq2129sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536809011106/bq2129Isup2.hkl |
CCDC reference: 726295
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean
(C-C) = 0.003 Å
- R factor = 0.041
- wR factor = 0.108
- Data-to-parameter ratio = 16.8
checkCIF/PLATON results
No syntax errors found
Alert level C Value of measurement temperature given = 120.000 Value of melting point given = 0.000 PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.47 PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.83 Ratio PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Zn1 -- O1 .. 6.12 su PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C8 - C13 ... 1.53 Ang. PLAT417_ALERT_2_C Short Inter D-H..H-D H2O .. H1W3 .. 2.10 Ang. PLAT417_ALERT_2_C Short Inter D-H..H-D H2O .. H2W3 .. 2.10 Ang. PLAT042_ALERT_1_C Calc. and Reported MoietyFormula Strings Differ ?
Alert level G PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 10
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 5 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
An aqueous solution of zinc nitrate (Zn(NO3)2. 6H2O, (0.15 g, 0.5 mmol) in water (20 ml) was added to a stirring solution of (20 ml) pyridine-2,6-dicarboxylic acid (0.1 g, 0.5 mmol) and 0.25 g (1.5 mmol) acridine. The reaction mixture was stirred at 25°C for 2 h. Colorless crystals of the title compound were obtained after two weeks at room temperature.
The H(C) atoms were positioned geometrically and refined in isotropically in riding model with Uiso(H)=1.2Ueq(C). The H atoms of water molecules, OH and NH groups were located in difference Fourier synthesis and refined isotropically.
Data collection: SMART (Bruker, 1998); cell refinement: SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
(C13H10N)[Zn(C7H3NO4)(C7H4NO4)]·5H2O | F(000) = 1376 |
Mr = 666.89 | Dx = 1.572 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 8302 reflections |
a = 9.6083 (5) Å | θ = 2.2–29.7° |
b = 18.9681 (9) Å | µ = 0.95 mm−1 |
c = 15.5435 (8) Å | T = 120 K |
β = 96.051 (1)° | Prism, yellow |
V = 2817.0 (2) Å3 | 0.60 × 0.14 × 0.14 mm |
Z = 4 |
Bruker SMART 1000 CCD area-detector diffractometer | 7457 independent reflections |
Radiation source: normal-focus sealed tube | 5795 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
ω scans | θmax = 29.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | h = −13→13 |
Tmin = 0.652, Tmax = 0.879 | k = −25→25 |
26948 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0451P)2 + 2.9525P] where P = (Fo2 + 2Fc2)/3 |
7457 reflections | (Δ/σ)max = 0.002 |
445 parameters | Δρmax = 0.87 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
(C13H10N)[Zn(C7H3NO4)(C7H4NO4)]·5H2O | V = 2817.0 (2) Å3 |
Mr = 666.89 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.6083 (5) Å | µ = 0.95 mm−1 |
b = 18.9681 (9) Å | T = 120 K |
c = 15.5435 (8) Å | 0.60 × 0.14 × 0.14 mm |
β = 96.051 (1)° |
Bruker SMART 1000 CCD area-detector diffractometer | 7457 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | 5795 reflections with I > 2σ(I) |
Tmin = 0.652, Tmax = 0.879 | Rint = 0.034 |
26948 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.87 e Å−3 |
7457 reflections | Δρmin = −0.35 e Å−3 |
445 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.49831 (3) | 0.093889 (12) | 0.701036 (14) | 0.01975 (8) | |
O1 | 0.34045 (16) | 0.18535 (8) | 0.71906 (9) | 0.0242 (3) | |
O2 | 0.23932 (16) | 0.23960 (8) | 0.82468 (10) | 0.0231 (3) | |
H2O | 0.198 (5) | 0.261 (2) | 0.779 (3) | 0.092 (15)* | |
O3 | 0.63925 (16) | 0.01596 (8) | 0.74853 (9) | 0.0227 (3) | |
O4 | 0.73383 (16) | −0.03264 (8) | 0.87279 (10) | 0.0248 (3) | |
O5 | 0.32802 (16) | 0.02475 (8) | 0.65903 (9) | 0.0229 (3) | |
O6 | 0.20086 (16) | −0.01389 (8) | 0.53928 (10) | 0.0262 (3) | |
O7 | 0.65542 (15) | 0.17569 (8) | 0.68086 (9) | 0.0218 (3) | |
O8 | 0.74307 (17) | 0.23451 (8) | 0.57367 (10) | 0.0269 (3) | |
N1 | 0.48997 (17) | 0.10445 (8) | 0.82995 (10) | 0.0167 (3) | |
N2 | 0.48458 (17) | 0.10381 (8) | 0.57225 (10) | 0.0155 (3) | |
C1 | 0.4084 (2) | 0.15173 (10) | 0.86374 (12) | 0.0182 (4) | |
C2 | 0.4085 (2) | 0.15979 (10) | 0.95278 (13) | 0.0200 (4) | |
H2A | 0.3487 | 0.1928 | 0.9764 | 0.024* | |
C3 | 0.5000 (2) | 0.11747 (11) | 1.00590 (13) | 0.0222 (4) | |
H3A | 0.5039 | 0.1219 | 1.0670 | 0.027* | |
C4 | 0.5854 (2) | 0.06882 (11) | 0.96989 (13) | 0.0207 (4) | |
H4A | 0.6485 | 0.0401 | 1.0057 | 0.025* | |
C5 | 0.5764 (2) | 0.06307 (10) | 0.88014 (12) | 0.0168 (4) | |
C6 | 0.3236 (2) | 0.19449 (10) | 0.79562 (13) | 0.0191 (4) | |
C7 | 0.6578 (2) | 0.01088 (10) | 0.83018 (13) | 0.0193 (4) | |
C8 | 0.3880 (2) | 0.06609 (10) | 0.52419 (12) | 0.0170 (4) | |
C9 | 0.3753 (2) | 0.07039 (11) | 0.43455 (12) | 0.0198 (4) | |
H9A | 0.3063 | 0.0438 | 0.4003 | 0.024* | |
C10 | 0.4666 (2) | 0.11477 (11) | 0.39627 (13) | 0.0227 (4) | |
H10A | 0.4619 | 0.1176 | 0.3350 | 0.027* | |
C11 | 0.5645 (2) | 0.15491 (11) | 0.44730 (13) | 0.0213 (4) | |
H11A | 0.6256 | 0.1862 | 0.4219 | 0.026* | |
C12 | 0.5702 (2) | 0.14777 (10) | 0.53652 (12) | 0.0167 (4) | |
C13 | 0.2970 (2) | 0.02123 (10) | 0.57769 (13) | 0.0190 (4) | |
C14 | 0.6661 (2) | 0.18976 (10) | 0.60159 (13) | 0.0189 (4) | |
N3 | 0.76898 (19) | 0.21857 (9) | 0.84229 (12) | 0.0208 (3) | |
H3N | 0.746 (3) | 0.2148 (15) | 0.7896 (19) | 0.037 (8)* | |
C15 | 0.6925 (2) | 0.26041 (10) | 0.88993 (13) | 0.0204 (4) | |
C16 | 0.5844 (2) | 0.30294 (11) | 0.85003 (15) | 0.0255 (4) | |
H16A | 0.5673 | 0.3048 | 0.7887 | 0.031* | |
C17 | 0.5043 (3) | 0.34143 (11) | 0.90007 (16) | 0.0302 (5) | |
H17A | 0.4304 | 0.3695 | 0.8731 | 0.036* | |
C18 | 0.5291 (3) | 0.34042 (12) | 0.99176 (16) | 0.0321 (5) | |
H18A | 0.4708 | 0.3671 | 1.0253 | 0.039* | |
C19 | 0.6361 (3) | 0.30137 (13) | 1.03178 (15) | 0.0311 (5) | |
H19A | 0.6538 | 0.3021 | 1.0931 | 0.037* | |
C20 | 0.7215 (2) | 0.25951 (11) | 0.98225 (13) | 0.0238 (4) | |
C21 | 0.8285 (2) | 0.21652 (12) | 1.01903 (14) | 0.0284 (5) | |
H21A | 0.8496 | 0.2160 | 1.0801 | 0.034* | |
C22 | 0.9057 (2) | 0.17410 (11) | 0.96824 (14) | 0.0263 (4) | |
C23 | 1.0150 (3) | 0.12781 (14) | 1.00362 (18) | 0.0382 (6) | |
H23A | 1.0393 | 0.1257 | 1.0644 | 0.046* | |
C24 | 1.0833 (3) | 0.08721 (13) | 0.9503 (2) | 0.0426 (7) | |
H24A | 1.1552 | 0.0565 | 0.9743 | 0.051* | |
C25 | 1.0502 (3) | 0.08954 (12) | 0.8598 (2) | 0.0397 (6) | |
H25A | 1.1008 | 0.0606 | 0.8241 | 0.048* | |
C26 | 0.9464 (2) | 0.13276 (12) | 0.82196 (17) | 0.0309 (5) | |
H26A | 0.9245 | 0.1338 | 0.7609 | 0.037* | |
C27 | 0.8730 (2) | 0.17567 (11) | 0.87635 (14) | 0.0231 (4) | |
O1W | 0.84765 (17) | 0.32871 (9) | 0.69335 (11) | 0.0251 (3) | |
H1W1 | 0.815 (3) | 0.3033 (16) | 0.656 (2) | 0.034 (8)* | |
H2W1 | 0.813 (4) | 0.369 (2) | 0.681 (2) | 0.065 (11)* | |
O2W | 0.96559 (18) | −0.06357 (9) | 0.77630 (12) | 0.0279 (3) | |
H1W2 | 0.909 (3) | −0.0493 (17) | 0.808 (2) | 0.045 (9)* | |
H2W2 | 0.940 (3) | −0.0417 (16) | 0.729 (2) | 0.039 (8)* | |
O3W | 0.12555 (19) | 0.31700 (9) | 0.71080 (10) | 0.0262 (3) | |
H1W3 | 0.037 (4) | 0.3180 (18) | 0.708 (2) | 0.051 (9)* | |
H2W3 | 0.170 (5) | 0.356 (2) | 0.710 (3) | 0.084 (14)* | |
O4W | 0.25508 (19) | −0.05822 (9) | 0.79542 (12) | 0.0302 (4) | |
H1W4 | 0.170 (4) | −0.0602 (18) | 0.791 (2) | 0.049 (10)* | |
H2W4 | 0.268 (4) | −0.0327 (18) | 0.755 (2) | 0.050 (9)* | |
O5W | 0.0430 (2) | −0.01699 (10) | 0.37439 (12) | 0.0322 (4) | |
H1W5 | −0.029 (3) | −0.0086 (15) | 0.3945 (19) | 0.031 (7)* | |
H2W5 | 0.099 (4) | −0.016 (2) | 0.421 (3) | 0.066 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.02513 (13) | 0.02160 (13) | 0.01244 (12) | −0.00038 (9) | 0.00163 (9) | −0.00009 (8) |
O1 | 0.0300 (8) | 0.0264 (7) | 0.0162 (7) | 0.0090 (6) | 0.0017 (6) | 0.0001 (6) |
O2 | 0.0248 (8) | 0.0238 (7) | 0.0208 (7) | 0.0080 (6) | 0.0026 (6) | −0.0013 (6) |
O3 | 0.0293 (8) | 0.0239 (7) | 0.0149 (6) | 0.0062 (6) | 0.0015 (6) | −0.0021 (5) |
O4 | 0.0279 (8) | 0.0236 (7) | 0.0227 (7) | 0.0082 (6) | 0.0012 (6) | 0.0023 (6) |
O5 | 0.0251 (7) | 0.0262 (7) | 0.0172 (7) | −0.0050 (6) | 0.0018 (6) | 0.0018 (6) |
O6 | 0.0247 (8) | 0.0276 (8) | 0.0255 (8) | −0.0079 (6) | −0.0008 (6) | 0.0004 (6) |
O7 | 0.0266 (8) | 0.0233 (7) | 0.0152 (6) | −0.0052 (6) | 0.0011 (5) | −0.0005 (5) |
O8 | 0.0298 (8) | 0.0273 (8) | 0.0236 (7) | −0.0114 (6) | 0.0030 (6) | −0.0003 (6) |
N1 | 0.0194 (8) | 0.0174 (7) | 0.0132 (7) | −0.0023 (6) | 0.0014 (6) | −0.0003 (6) |
N2 | 0.0166 (8) | 0.0164 (7) | 0.0136 (7) | 0.0014 (6) | 0.0018 (6) | −0.0007 (6) |
C1 | 0.0195 (9) | 0.0177 (9) | 0.0178 (9) | −0.0024 (7) | 0.0030 (7) | −0.0010 (7) |
C2 | 0.0231 (10) | 0.0189 (9) | 0.0187 (9) | −0.0006 (7) | 0.0046 (7) | −0.0029 (7) |
C3 | 0.0281 (10) | 0.0245 (10) | 0.0146 (9) | −0.0029 (8) | 0.0050 (8) | −0.0033 (7) |
C4 | 0.0255 (10) | 0.0194 (9) | 0.0168 (9) | −0.0012 (8) | 0.0001 (7) | 0.0021 (7) |
C5 | 0.0172 (9) | 0.0153 (8) | 0.0178 (9) | −0.0021 (7) | 0.0005 (7) | −0.0008 (7) |
C6 | 0.0193 (9) | 0.0192 (9) | 0.0188 (9) | 0.0004 (7) | 0.0017 (7) | −0.0003 (7) |
C7 | 0.0205 (9) | 0.0185 (9) | 0.0190 (9) | 0.0001 (7) | 0.0020 (7) | −0.0004 (7) |
C8 | 0.0181 (9) | 0.0151 (8) | 0.0178 (9) | 0.0025 (7) | 0.0014 (7) | −0.0006 (7) |
C9 | 0.0212 (10) | 0.0210 (9) | 0.0168 (9) | −0.0002 (7) | −0.0007 (7) | −0.0027 (7) |
C10 | 0.0277 (11) | 0.0273 (10) | 0.0130 (9) | 0.0003 (8) | 0.0015 (8) | 0.0003 (7) |
C11 | 0.0247 (10) | 0.0221 (9) | 0.0176 (9) | −0.0013 (8) | 0.0045 (8) | 0.0023 (7) |
C12 | 0.0173 (9) | 0.0161 (8) | 0.0164 (8) | 0.0017 (7) | 0.0004 (7) | 0.0000 (7) |
C13 | 0.0200 (9) | 0.0170 (9) | 0.0203 (9) | 0.0007 (7) | 0.0031 (7) | 0.0007 (7) |
C14 | 0.0192 (9) | 0.0177 (9) | 0.0197 (9) | −0.0009 (7) | 0.0014 (7) | −0.0015 (7) |
N3 | 0.0238 (9) | 0.0194 (8) | 0.0183 (8) | −0.0032 (7) | −0.0024 (7) | 0.0010 (6) |
C15 | 0.0220 (10) | 0.0191 (9) | 0.0197 (9) | −0.0058 (7) | 0.0007 (7) | 0.0009 (7) |
C16 | 0.0284 (11) | 0.0206 (10) | 0.0267 (10) | −0.0008 (8) | −0.0011 (8) | 0.0020 (8) |
C17 | 0.0298 (12) | 0.0193 (10) | 0.0418 (13) | −0.0009 (8) | 0.0054 (10) | 0.0004 (9) |
C18 | 0.0361 (13) | 0.0248 (11) | 0.0375 (13) | −0.0055 (9) | 0.0132 (10) | −0.0072 (9) |
C19 | 0.0388 (13) | 0.0325 (12) | 0.0233 (10) | −0.0139 (10) | 0.0084 (9) | −0.0064 (9) |
C20 | 0.0277 (11) | 0.0225 (10) | 0.0206 (10) | −0.0095 (8) | 0.0006 (8) | 0.0002 (8) |
C21 | 0.0327 (12) | 0.0317 (11) | 0.0193 (10) | −0.0119 (9) | −0.0049 (9) | 0.0051 (8) |
C22 | 0.0240 (10) | 0.0238 (10) | 0.0289 (11) | −0.0070 (8) | −0.0081 (8) | 0.0083 (8) |
C23 | 0.0312 (13) | 0.0341 (13) | 0.0452 (14) | −0.0058 (10) | −0.0146 (11) | 0.0147 (11) |
C24 | 0.0259 (12) | 0.0279 (12) | 0.070 (2) | 0.0008 (10) | −0.0132 (12) | 0.0085 (12) |
C25 | 0.0268 (12) | 0.0219 (11) | 0.0692 (19) | −0.0018 (9) | 0.0003 (12) | −0.0086 (11) |
C26 | 0.0247 (11) | 0.0251 (11) | 0.0424 (13) | −0.0023 (9) | 0.0014 (10) | −0.0060 (9) |
C27 | 0.0213 (10) | 0.0190 (9) | 0.0280 (10) | −0.0059 (8) | −0.0028 (8) | 0.0014 (8) |
O1W | 0.0268 (8) | 0.0240 (8) | 0.0233 (8) | −0.0020 (6) | −0.0036 (6) | −0.0009 (6) |
O2W | 0.0274 (8) | 0.0299 (8) | 0.0273 (8) | 0.0023 (7) | 0.0068 (7) | −0.0007 (7) |
O3W | 0.0239 (8) | 0.0250 (8) | 0.0290 (8) | 0.0035 (6) | −0.0010 (6) | −0.0002 (6) |
O4W | 0.0274 (9) | 0.0298 (9) | 0.0341 (9) | 0.0025 (7) | 0.0064 (7) | 0.0095 (7) |
O5W | 0.0264 (9) | 0.0412 (10) | 0.0288 (9) | −0.0026 (7) | 0.0019 (7) | 0.0048 (7) |
Zn1—N2 | 2.0011 (16) | N3—C27 | 1.352 (3) |
Zn1—N1 | 2.0238 (16) | N3—C15 | 1.354 (3) |
Zn1—O3 | 2.0864 (14) | N3—H3N | 0.83 (3) |
Zn1—O5 | 2.1443 (15) | C15—C16 | 1.407 (3) |
Zn1—O7 | 2.2100 (14) | C15—C20 | 1.433 (3) |
Zn1—O1 | 2.3406 (14) | C16—C17 | 1.362 (3) |
O1—C6 | 1.230 (2) | C16—H16A | 0.9500 |
O2—C6 | 1.292 (2) | C17—C18 | 1.420 (4) |
O2—H2O | 0.87 (5) | C17—H17A | 0.9500 |
O3—C7 | 1.267 (2) | C18—C19 | 1.363 (4) |
O4—C7 | 1.246 (2) | C18—H18A | 0.9500 |
O5—C13 | 1.270 (2) | C19—C20 | 1.425 (3) |
O6—C13 | 1.240 (2) | C19—H19A | 0.9500 |
O7—C14 | 1.275 (2) | C20—C21 | 1.387 (3) |
O8—C14 | 1.234 (2) | C21—C22 | 1.395 (3) |
N1—C5 | 1.334 (2) | C21—H21A | 0.9500 |
N1—C1 | 1.335 (2) | C22—C27 | 1.430 (3) |
N2—C12 | 1.333 (2) | C22—C23 | 1.433 (3) |
N2—C8 | 1.336 (2) | C23—C24 | 1.351 (4) |
C1—C2 | 1.392 (3) | C23—H23A | 0.9500 |
C1—C6 | 1.503 (3) | C24—C25 | 1.411 (4) |
C2—C3 | 1.395 (3) | C24—H24A | 0.9500 |
C2—H2A | 0.9500 | C25—C26 | 1.374 (4) |
C3—C4 | 1.391 (3) | C25—H25A | 0.9500 |
C3—H3A | 0.9500 | C26—C27 | 1.414 (3) |
C4—C5 | 1.393 (3) | C26—H26A | 0.9500 |
C4—H4A | 0.9500 | O1W—H1W1 | 0.79 (3) |
C5—C7 | 1.524 (3) | O1W—H2W1 | 0.84 (4) |
C8—C9 | 1.388 (3) | O2W—H1W2 | 0.82 (3) |
C8—C13 | 1.527 (3) | O2W—H2W2 | 0.85 (3) |
C9—C10 | 1.394 (3) | O3W—H1W3 | 0.85 (4) |
C9—H9A | 0.9500 | O3W—H2W3 | 0.85 (5) |
C10—C11 | 1.392 (3) | O4W—H1W4 | 0.82 (4) |
C10—H10A | 0.9500 | O4W—H2W4 | 0.81 (4) |
C11—C12 | 1.389 (3) | O5W—H1W5 | 0.80 (3) |
C11—H11A | 0.9500 | O5W—H2W5 | 0.86 (4) |
C12—C14 | 1.520 (3) | ||
N2—Zn1—N1 | 167.38 (7) | C10—C11—H11A | 121.0 |
N2—Zn1—O3 | 113.11 (6) | N2—C12—C11 | 121.08 (18) |
N1—Zn1—O3 | 79.15 (6) | N2—C12—C14 | 114.08 (16) |
N2—Zn1—O5 | 77.60 (6) | C11—C12—C14 | 124.79 (18) |
N1—Zn1—O5 | 104.68 (6) | O6—C13—O5 | 126.33 (19) |
O3—Zn1—O5 | 96.92 (6) | O6—C13—C8 | 118.50 (17) |
N2—Zn1—O7 | 76.47 (6) | O5—C13—C8 | 115.16 (17) |
N1—Zn1—O7 | 99.78 (6) | O8—C14—O7 | 126.56 (18) |
O3—Zn1—O7 | 96.89 (6) | O8—C14—C12 | 118.05 (17) |
O5—Zn1—O7 | 153.75 (5) | O7—C14—C12 | 115.37 (17) |
N2—Zn1—O1 | 94.29 (6) | C27—N3—C15 | 124.05 (19) |
N1—Zn1—O1 | 73.40 (6) | C27—N3—H3N | 116 (2) |
O3—Zn1—O1 | 152.55 (5) | C15—N3—H3N | 119 (2) |
O5—Zn1—O1 | 90.37 (6) | N3—C15—C16 | 120.89 (19) |
O7—Zn1—O1 | 87.57 (6) | N3—C15—C20 | 118.76 (19) |
C6—O1—Zn1 | 111.93 (13) | C16—C15—C20 | 120.3 (2) |
C6—O2—H2O | 106 (3) | C17—C16—C15 | 119.4 (2) |
C7—O3—Zn1 | 115.21 (12) | C17—C16—H16A | 120.3 |
C13—O5—Zn1 | 115.26 (12) | C15—C16—H16A | 120.3 |
C14—O7—Zn1 | 114.18 (12) | C16—C17—C18 | 121.4 (2) |
C5—N1—C1 | 121.40 (17) | C16—C17—H17A | 119.3 |
C5—N1—Zn1 | 115.70 (13) | C18—C17—H17A | 119.3 |
C1—N1—Zn1 | 122.84 (13) | C19—C18—C17 | 120.3 (2) |
C12—N2—C8 | 121.65 (16) | C19—C18—H18A | 119.9 |
C12—N2—Zn1 | 119.81 (13) | C17—C18—H18A | 119.9 |
C8—N2—Zn1 | 118.53 (13) | C18—C19—C20 | 120.4 (2) |
N1—C1—C2 | 121.71 (18) | C18—C19—H19A | 119.8 |
N1—C1—C6 | 112.49 (16) | C20—C19—H19A | 119.8 |
C2—C1—C6 | 125.77 (18) | C21—C20—C19 | 123.3 (2) |
C1—C2—C3 | 117.39 (18) | C21—C20—C15 | 118.5 (2) |
C1—C2—H2A | 121.3 | C19—C20—C15 | 118.2 (2) |
C3—C2—H2A | 121.3 | C20—C21—C22 | 121.4 (2) |
C4—C3—C2 | 120.34 (18) | C20—C21—H21A | 119.3 |
C4—C3—H3A | 119.8 | C22—C21—H21A | 119.3 |
C2—C3—H3A | 119.8 | C21—C22—C27 | 118.6 (2) |
C3—C4—C5 | 118.55 (18) | C21—C22—C23 | 123.2 (2) |
C3—C4—H4A | 120.7 | C27—C22—C23 | 118.1 (2) |
C5—C4—H4A | 120.7 | C24—C23—C22 | 119.9 (2) |
N1—C5—C4 | 120.58 (18) | C24—C23—H23A | 120.1 |
N1—C5—C7 | 113.94 (16) | C22—C23—H23A | 120.1 |
C4—C5—C7 | 125.47 (18) | C23—C24—C25 | 121.4 (2) |
O1—C6—O2 | 125.66 (19) | C23—C24—H24A | 119.3 |
O1—C6—C1 | 119.23 (18) | C25—C24—H24A | 119.3 |
O2—C6—C1 | 115.09 (17) | C26—C25—C24 | 121.5 (3) |
O4—C7—O3 | 126.57 (19) | C26—C25—H25A | 119.2 |
O4—C7—C5 | 117.59 (17) | C24—C25—H25A | 119.2 |
O3—C7—C5 | 115.84 (17) | C25—C26—C27 | 118.2 (2) |
N2—C8—C9 | 120.81 (18) | C25—C26—H26A | 120.9 |
N2—C8—C13 | 113.42 (16) | C27—C26—H26A | 120.9 |
C9—C8—C13 | 125.76 (18) | N3—C27—C26 | 120.4 (2) |
C8—C9—C10 | 118.12 (18) | N3—C27—C22 | 118.6 (2) |
C8—C9—H9A | 120.9 | C26—C27—C22 | 120.9 (2) |
C10—C9—H9A | 120.9 | H1W1—O1W—H2W1 | 105 (3) |
C11—C10—C9 | 120.35 (18) | H1W2—O2W—H2W2 | 102 (3) |
C11—C10—H10A | 119.8 | H1W3—O3W—H2W3 | 119 (4) |
C9—C10—H10A | 119.8 | H1W4—O4W—H2W4 | 101 (3) |
C12—C11—C10 | 117.95 (19) | H1W5—O5W—H2W5 | 99 (3) |
C12—C11—H11A | 121.0 | ||
N2—Zn1—O1—C6 | −179.71 (14) | Zn1—O3—C7—C5 | −1.0 (2) |
N1—Zn1—O1—C6 | −2.52 (14) | N1—C5—C7—O4 | −175.43 (18) |
O3—Zn1—O1—C6 | −3.2 (2) | C4—C5—C7—O4 | 3.6 (3) |
O5—Zn1—O1—C6 | 102.70 (14) | N1—C5—C7—O3 | 3.8 (3) |
O7—Zn1—O1—C6 | −103.48 (14) | C4—C5—C7—O3 | −177.18 (19) |
N2—Zn1—O3—C7 | 175.78 (14) | C12—N2—C8—C9 | 1.3 (3) |
N1—Zn1—O3—C7 | −1.10 (14) | Zn1—N2—C8—C9 | −179.21 (14) |
O5—Zn1—O3—C7 | −104.79 (15) | C12—N2—C8—C13 | −177.72 (16) |
O7—Zn1—O3—C7 | 97.59 (14) | Zn1—N2—C8—C13 | 1.8 (2) |
O1—Zn1—O3—C7 | −0.5 (2) | N2—C8—C9—C10 | 0.4 (3) |
N2—Zn1—O5—C13 | 0.03 (14) | C13—C8—C9—C10 | 179.29 (18) |
N1—Zn1—O5—C13 | 167.26 (14) | C8—C9—C10—C11 | −1.8 (3) |
O3—Zn1—O5—C13 | −112.19 (14) | C9—C10—C11—C12 | 1.6 (3) |
O7—Zn1—O5—C13 | 9.1 (2) | C8—N2—C12—C11 | −1.5 (3) |
O1—Zn1—O5—C13 | 94.34 (14) | Zn1—N2—C12—C11 | 178.99 (14) |
N2—Zn1—O7—C14 | −1.10 (13) | C8—N2—C12—C14 | 176.01 (16) |
N1—Zn1—O7—C14 | −168.79 (14) | Zn1—N2—C12—C14 | −3.5 (2) |
O3—Zn1—O7—C14 | 111.08 (14) | C10—C11—C12—N2 | 0.0 (3) |
O5—Zn1—O7—C14 | −10.2 (2) | C10—C11—C12—C14 | −177.22 (19) |
O1—Zn1—O7—C14 | −96.10 (14) | Zn1—O5—C13—O6 | −178.26 (17) |
N2—Zn1—N1—C5 | −163.5 (3) | Zn1—O5—C13—C8 | 0.8 (2) |
O3—Zn1—N1—C5 | 3.30 (13) | N2—C8—C13—O6 | 177.49 (17) |
O5—Zn1—N1—C5 | 97.69 (14) | C9—C8—C13—O6 | −1.5 (3) |
O7—Zn1—N1—C5 | −91.92 (14) | N2—C8—C13—O5 | −1.7 (2) |
O1—Zn1—N1—C5 | −176.39 (15) | C9—C8—C13—O5 | 179.34 (19) |
N2—Zn1—N1—C1 | 13.6 (4) | Zn1—O7—C14—O8 | 177.92 (17) |
O3—Zn1—N1—C1 | −179.60 (16) | Zn1—O7—C14—C12 | −0.3 (2) |
O5—Zn1—N1—C1 | −85.21 (15) | N2—C12—C14—O8 | −176.04 (18) |
O7—Zn1—N1—C1 | 85.18 (15) | C11—C12—C14—O8 | 1.4 (3) |
O1—Zn1—N1—C1 | 0.71 (14) | N2—C12—C14—O7 | 2.3 (2) |
N1—Zn1—N2—C12 | 76.6 (3) | C11—C12—C14—O7 | 179.78 (19) |
O3—Zn1—N2—C12 | −89.25 (15) | C27—N3—C15—C16 | −179.05 (19) |
O5—Zn1—N2—C12 | 178.44 (15) | C27—N3—C15—C20 | −0.4 (3) |
O7—Zn1—N2—C12 | 2.55 (14) | N3—C15—C16—C17 | 176.4 (2) |
O1—Zn1—N2—C12 | 89.01 (14) | C20—C15—C16—C17 | −2.2 (3) |
N1—Zn1—N2—C8 | −102.9 (3) | C15—C16—C17—C18 | 1.0 (3) |
O3—Zn1—N2—C8 | 91.25 (14) | C16—C17—C18—C19 | 1.1 (3) |
O5—Zn1—N2—C8 | −1.06 (13) | C17—C18—C19—C20 | −1.9 (3) |
O7—Zn1—N2—C8 | −176.94 (15) | C18—C19—C20—C21 | −177.4 (2) |
O1—Zn1—N2—C8 | −90.49 (14) | C18—C19—C20—C15 | 0.7 (3) |
C5—N1—C1—C2 | −0.5 (3) | N3—C15—C20—C21 | 1.0 (3) |
Zn1—N1—C1—C2 | −177.47 (14) | C16—C15—C20—C21 | 179.63 (19) |
C5—N1—C1—C6 | 177.80 (17) | N3—C15—C20—C19 | −177.22 (18) |
Zn1—N1—C1—C6 | 0.9 (2) | C16—C15—C20—C19 | 1.4 (3) |
N1—C1—C2—C3 | 1.4 (3) | C19—C20—C21—C22 | 177.2 (2) |
C6—C1—C2—C3 | −176.73 (19) | C15—C20—C21—C22 | −0.9 (3) |
C1—C2—C3—C4 | −0.8 (3) | C20—C21—C22—C27 | 0.2 (3) |
C2—C3—C4—C5 | −0.6 (3) | C20—C21—C22—C23 | −178.6 (2) |
C1—N1—C5—C4 | −0.9 (3) | C21—C22—C23—C24 | 178.6 (2) |
Zn1—N1—C5—C4 | 176.22 (14) | C27—C22—C23—C24 | −0.2 (3) |
C1—N1—C5—C7 | 178.16 (17) | C22—C23—C24—C25 | 0.4 (4) |
Zn1—N1—C5—C7 | −4.7 (2) | C23—C24—C25—C26 | −0.5 (4) |
C3—C4—C5—N1 | 1.5 (3) | C24—C25—C26—C27 | 0.3 (4) |
C3—C4—C5—C7 | −177.51 (19) | C15—N3—C27—C26 | 178.98 (19) |
Zn1—O1—C6—O2 | −177.61 (16) | C15—N3—C27—C22 | −0.3 (3) |
Zn1—O1—C6—C1 | 3.8 (2) | C25—C26—C27—N3 | −179.3 (2) |
N1—C1—C6—O1 | −3.4 (3) | C25—C26—C27—C22 | −0.1 (3) |
C2—C1—C6—O1 | 174.9 (2) | C21—C22—C27—N3 | 0.4 (3) |
N1—C1—C6—O2 | 177.91 (17) | C23—C22—C27—N3 | 179.27 (19) |
C2—C1—C6—O2 | −3.8 (3) | C21—C22—C27—C26 | −178.9 (2) |
Zn1—O3—C7—O4 | 178.12 (17) | C23—C22—C27—C26 | 0.0 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O3W | 0.88 (4) | 1.61 (4) | 2.465 (2) | 166 (4) |
N3—H3N···O7 | 0.83 (3) | 1.96 (3) | 2.752 (2) | 159 (3) |
O1W—H1W1···O8 | 0.79 (3) | 1.91 (3) | 2.696 (2) | 174 (3) |
O1W—H2W1···O4i | 0.85 (4) | 2.07 (4) | 2.901 (2) | 165 (3) |
O2W—H1W2···O4 | 0.82 (3) | 2.07 (3) | 2.873 (2) | 166 (3) |
O2W—H2W2···O5Wii | 0.86 (3) | 1.98 (3) | 2.791 (3) | 158 (3) |
O3W—H1W3···O1Wiii | 0.85 (4) | 1.82 (4) | 2.665 (2) | 173 (3) |
O3W—H2W3···O4Wiv | 0.85 (4) | 1.78 (4) | 2.636 (2) | 174 (5) |
O4W—H1W4···O2Wiii | 0.81 (4) | 1.95 (4) | 2.768 (3) | 178 (3) |
O4W—H2W4···O5 | 0.81 (3) | 1.98 (3) | 2.788 (2) | 172 (4) |
O5W—H1W5···O6v | 0.80 (3) | 2.08 (3) | 2.880 (2) | 173 (3) |
O5W—H2W5···O6 | 0.86 (4) | 1.99 (5) | 2.838 (2) | 171 (4) |
Symmetry codes: (i) −x+3/2, y+1/2, −z+3/2; (ii) −x+1, −y, −z+1; (iii) x−1, y, z; (iv) −x+1/2, y+1/2, −z+3/2; (v) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | (C13H10N)[Zn(C7H3NO4)(C7H4NO4)]·5H2O |
Mr | 666.89 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 120 |
a, b, c (Å) | 9.6083 (5), 18.9681 (9), 15.5435 (8) |
β (°) | 96.051 (1) |
V (Å3) | 2817.0 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.95 |
Crystal size (mm) | 0.60 × 0.14 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1998) |
Tmin, Tmax | 0.652, 0.879 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26948, 7457, 5795 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.108, 1.06 |
No. of reflections | 7457 |
No. of parameters | 445 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.87, −0.35 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXTL (Sheldrick, 2008).
Zn1—N2 | 2.0011 (16) | Zn1—O5 | 2.1443 (15) |
Zn1—N1 | 2.0238 (16) | Zn1—O7 | 2.2100 (14) |
Zn1—O3 | 2.0864 (14) | Zn1—O1 | 2.3406 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O3W | 0.88 (4) | 1.61 (4) | 2.465 (2) | 166 (4) |
N3—H3N···O7 | 0.83 (3) | 1.96 (3) | 2.752 (2) | 159 (3) |
O1W—H1W1···O8 | 0.79 (3) | 1.91 (3) | 2.696 (2) | 174 (3) |
O1W—H2W1···O4i | 0.85 (4) | 2.07 (4) | 2.901 (2) | 165 (3) |
O2W—H1W2···O4 | 0.82 (3) | 2.07 (3) | 2.873 (2) | 166 (3) |
O2W—H2W2···O5Wii | 0.86 (3) | 1.98 (3) | 2.791 (3) | 158 (3) |
O3W—H1W3···O1Wiii | 0.85 (4) | 1.82 (4) | 2.665 (2) | 173 (3) |
O3W—H2W3···O4Wiv | 0.85 (4) | 1.78 (4) | 2.636 (2) | 174 (5) |
O4W—H1W4···O2Wiii | 0.81 (4) | 1.95 (4) | 2.768 (3) | 178 (3) |
O4W—H2W4···O5 | 0.81 (3) | 1.98 (3) | 2.788 (2) | 172 (4) |
O5W—H1W5···O6v | 0.80 (3) | 2.08 (3) | 2.880 (2) | 173 (3) |
O5W—H2W5···O6 | 0.86 (4) | 1.99 (5) | 2.838 (2) | 171 (4) |
Symmetry codes: (i) −x+3/2, y+1/2, −z+3/2; (ii) −x+1, −y, −z+1; (iii) x−1, y, z; (iv) −x+1/2, y+1/2, −z+3/2; (v) −x, −y, −z+1. |
In the recent years, our research group has been interested in the synthesis of proton transfer compounds and study of their behavior with metal ions. We have focused on the proton delivery from polycarboxylic acids, which are considered as very good donors and amines as acceptors. Among polycarboxylic acids, pyridine-2,6-dicarboxylic acid (pydcH2) as a very important carboxylate derivative has attracted much interest in coordination chemistry and it is the one that we utilized widely in our studies (Aghabozorg, Attar Gharamaleki et al., 2008; Aghabozorg, Firoozi et al., 2008; Aghabozorg, Manteghi et al., 2008; Tabatabaee et al., 2008; Soleimannejad et al., 2008; Aghabozorg et al., 2009; Safaei-Ghomi et al., 2009). In order to develop novel systems, we wish to report the first complex of ZnII with pyridine-2,6-dicarboxylic acid as proton donor and acridine as proton acceptor.
The title compound consists of [Zn(pydcH)(pydc)]- anion, (acrH)+ cation and five uncoordinated water molecules (Fig. 1). ZnII ionic complex includes dianionic ((pydc)2-) and monoanionic ((pydcH)–) forms of pydcH2, simultaneously. ZnII atom is six-coordinated by these anions and the geometry of the resulting ZnN2O4 coordination can be described as distorted octahedral (Table 1). The N atoms occupy the axial positions. The N1—Zn1—N2 angle (167.38 (8)°) deviates from linearity. The dihedral angle between the mean planes of the pyridine rings (A1 and A2, defined in Fig. 1) is 88.16 (9)° indicating that (pydc)2– and (pydcH)– fragments are almost perpendicular to each other. Zn—N distances of (2.0011 (16)Å and 2.0238 (16)Å and Zn—O distances (Zn1—O1:2.0864 (14)Å, Zn1—O5: 2.1443 (15)Å, Zn1—O3:2.2100 (14)Å and Zn1—O7: 2.3406 (14)Å) are consistent with those found in (pydaH)[Zn(pydcH)(pydc)].3H2O (Ranjbar et al. 2002) and (creatH)[Zn(pydcH)(pydc)].4H2O (Moghimi et al. 2005). There are some hydrogen bonding interactions such as O–H···O and N–H···O between cations, anions and uncoordinated water molecules (Table 2). The water molecules act also as bridging agents and link anions together via hydrogen bonds (Fig. 2). As it is seen in Fig. 3, there are also π-π stacking interactions between the aromatic rings of the coordinated (pydc)2– and (pydcH)- anions and acridinum cation, with distances of 3.537 (1)Å for Cg5···Cg7 [Cg5: N1/C1—C5, Cg7:N3/C15—C20—C21—C22—C27] and 3.751 (1)Å for Cg6···Cg7 (Cg6:N2/C8—C12). Ion pairing, hydrogen bonding, π–π stacking and van der Waals interactions are also effective packing for the crystal structure. These interactions lead to formation of a three-dimensional supramolecular structure.