The equimolar and hydrochloric acid-catalysed reaction between
cis-jasmone and 4-methylthiosemicarbazide in ethanolic solution yields the title compound, C
13H
21N
3S (common name:
cis-jasmone 4-methylthiosemicarbazone). Two molecules with all atoms in general positions are present in the asymmetric unit. In one of them, the carbon chain is disordered [site occupancy ratio = 0.821 (3):0.179 (3)]. The thiosemicarbazone entities [N—N—C(=S)—N] are approximately planar, with the maximum deviation from the mean plane through the selected atoms being −0.0115 (16) Å (r.m.s.d. = 0.0078 Å) for the non-disordered molecule and 0.0052 (14) Å (r.m.s.d. = 0.0031 Å) for the disordered one. The molecules are not planar, since the jasmone groups have a chain with
sp3-hybridized carbon atoms and, in addition, the thiosemicarbazone fragments are attached to the respective carbon five-membered rings and the dihedral angles between them for each molecule amount to 8.9 (1) and 6.3 (1)°. In the crystal, the molecules are connected through pairs of N—H
S and C—H
S interactions into crystallographically independent centrosymmetric dimers, in which rings of graph-set motifs
R22(8) and
R21(7) are observed. A Hirshfeld surface analysis indicates that the major contributions for the crystal cohesion are from H
H (70.6%), H
S/S
H (16.7%), H
C/C
H (7.5%) and H
N/N
H (4.9%) interactions [considering the two crystallographically independent molecules and only the disordered atoms with the highest s.o.f. for the evaluation].
Supporting information
CCDC reference: 2304272
Key indicators
Structure: I
- Single-crystal X-ray study
- T = 223 K
- Mean (C-C) = 0.003 Å
- Disorder in main residue
- R factor = 0.052
- wR factor = 0.140
- Data-to-parameter ratio = 14.6
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT906_ALERT_3_C Large K Value in the Analysis of Variance ...... 3.856 Check
PLAT910_ALERT_3_C Missing # of FCF Reflection(s) Below Theta(Min). 8 Note
1 0 0, 0 1 0, 1 1 0, 0 -1 1, 0 0 1, 1 0 1,
0 1 1, 0 0 2,
PLAT911_ALERT_3_C Missing FCF Refl Between Thmin & STh/L= 0.600 10 Report
2 0 0, -2 1 0, -8 4 2, -7 -4 9, -4 7 13, -2 8 13,
-4 6 14, -2 7 15, 0 8 16, -1 -4 17,
Alert level G
PLAT066_ALERT_1_G Predicted and Reported Tmin&Tmax Range Identical ? Check
PLAT171_ALERT_4_G The CIF-Embedded .res File Contains EADP Records 4 Report
PLAT230_ALERT_2_G Hirshfeld Test Diff for C19 --C20B . 7.0 s.u.
PLAT301_ALERT_3_G Main Residue Disorder ..............(Resd 1) 24% Note
PLAT411_ALERT_2_G Short Inter H...H Contact H6A ..H20A . 2.07 Ang.
x,y,z = 1_555 Check
PLAT412_ALERT_2_G Short Intra XH3 .. XHn H24A ..H20B . 2.13 Ang.
x,y,z = 1_555 Check
PLAT480_ALERT_4_G Long H...A H-Bond Reported H5B ..S1 . 2.90 Ang.
PLAT480_ALERT_4_G Long H...A H-Bond Reported H18A ..S2 . 2.98 Ang.
PLAT899_ALERT_4_G SHELXL2018 is Deprecated and Succeeded by SHELXL 2019/3 Note
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 48 Note
PLAT913_ALERT_3_G Missing # of Very Strong Reflections in FCF .... 2 Note
2 0 0, -2 1 0,
PLAT941_ALERT_3_G Average HKL Measurement Multiplicity ........... 3.7 Low
PLAT969_ALERT_5_G The 'Henn et al.' R-Factor-gap value ........... 2.66 Note
Predicted wR2: Based on SigI 2 5.26 or SHELX Weight 14.05
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 2 Info
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
3 ALERT level C = Check. Ensure it is not caused by an omission or oversight
14 ALERT level G = General information/check it is not something unexpected
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
4 ALERT type 2 Indicator that the structure model may be wrong or deficient
6 ALERT type 3 Indicator that the structure quality may be low
5 ALERT type 4 Improvement, methodology, query or suggestion
1 ALERT type 5 Informative message, check
N-Methyl-2-{3-methyl-2-[(2
Z)-pent-2-en-1-yl]cyclopent-2-en-1-ylidene}hydrazinecarbothioamide
top
Crystal data top
C13H21N3S | Z = 4 |
Mr = 251.39 | F(000) = 544 |
Triclinic, P1 | Dx = 1.205 Mg m−3 |
a = 7.9583 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.2703 (2) Å | Cell parameters from 22795 reflections |
c = 16.0080 (5) Å | θ = 2.9–27.5° |
α = 83.0428 (18)° | µ = 0.22 mm−1 |
β = 86.9392 (13)° | T = 223 K |
γ = 76.5236 (18)° | Prism, colourless |
V = 1385.51 (6) Å3 | 0.28 × 0.13 × 0.12 mm |
Data collection top
Enraf–Nonius FR590 Kappa CCD diffractometer | 6319 independent reflections |
Radiation source: sealed X-ray tube, Enraf Nonius FR590 | 3700 reflections with I > 2σ(I) |
Horizontally mounted graphite crystal monochromator | Rint = 0.056 |
Detector resolution: 9 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
CCD rotation images, thick slices, κ–goniostat scans | h = −10→10 |
Absorption correction: analytical (Alcock, 1970) | k = −14→14 |
Tmin = 0.945, Tmax = 0.978 | l = −20→20 |
23118 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: mixed |
wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0556P)2 + 0.4261P] where P = (Fo2 + 2Fc2)/3 |
6319 reflections | (Δ/σ)max = 0.001 |
432 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
C1 | 0.0353 (3) | 0.1677 (2) | 0.75329 (13) | 0.0349 (5) | |
C2 | 0.0002 (4) | 0.0424 (2) | 0.75249 (14) | 0.0389 (5) | |
C3 | 0.0007 (4) | 0.0248 (2) | 0.65901 (15) | 0.0417 (6) | |
C4 | 0.0398 (3) | 0.1401 (2) | 0.61351 (13) | 0.0376 (5) | |
C5 | 0.0551 (3) | 0.2205 (2) | 0.66637 (13) | 0.0364 (5) | |
C6 | 0.0898 (4) | 0.3467 (2) | 0.64395 (17) | 0.0442 (6) | |
C7 | −0.0620 (4) | 0.4410 (2) | 0.60830 (17) | 0.0486 (6) | |
H7 | −0.090 (3) | 0.427 (3) | 0.5551 (18) | 0.067 (9)* | |
C8 | −0.1493 (4) | 0.5392 (3) | 0.6422 (2) | 0.0583 (7) | |
H8 | −0.243 (3) | 0.593 (2) | 0.6108 (16) | 0.055 (7)* | |
C9 | −0.1227 (6) | 0.5789 (3) | 0.7249 (2) | 0.0773 (10) | |
H9A | −0.009 (5) | 0.516 (4) | 0.750 (2) | 0.124 (14)* | |
H9B | −0.226 (5) | 0.571 (3) | 0.762 (2) | 0.110 (13)* | |
C10 | −0.1051 (5) | 0.7098 (3) | 0.7187 (2) | 0.0664 (9) | |
H10A | −0.003 (5) | 0.725 (3) | 0.684 (2) | 0.090 (11)* | |
H10B | −0.095 (5) | 0.735 (3) | 0.771 (2) | 0.103 (13)* | |
H10C | −0.203 (5) | 0.764 (3) | 0.692 (2) | 0.102 (12)* | |
C11 | 0.0650 (3) | 0.2114 (2) | 0.96479 (14) | 0.0410 (6) | |
C12 | 0.0594 (4) | 0.1544 (3) | 0.52013 (16) | 0.0502 (7) | |
C13 | 0.1722 (4) | 0.3754 (3) | 1.01676 (17) | 0.0605 (8) | |
H13A | 0.078825 | 0.394161 | 1.057058 | 0.091* | |
H13B | 0.202888 | 0.449897 | 0.992591 | 0.091* | |
H13C | 0.270256 | 0.321649 | 1.044276 | 0.091* | |
H1 | 0.000 (3) | 0.099 (3) | 0.9014 (16) | 0.055 (9)* | |
H2 | 0.136 (4) | 0.342 (3) | 0.9011 (18) | 0.062 (9)* | |
H4A | −0.107 (3) | 0.012 (2) | 0.6423 (14) | 0.043 (7)* | |
H4B | 0.087 (3) | −0.043 (2) | 0.6446 (14) | 0.041 (6)* | |
H5A | −0.111 (4) | 0.036 (2) | 0.7836 (16) | 0.062 (8)* | |
H5B | 0.083 (3) | −0.023 (2) | 0.7831 (16) | 0.055 (7)* | |
H6A | 0.132 (3) | 0.375 (2) | 0.6918 (14) | 0.037 (6)* | |
H6B | 0.178 (4) | 0.344 (2) | 0.6043 (17) | 0.058 (8)* | |
H11A | −0.050 (4) | 0.144 (3) | 0.4942 (19) | 0.078 (10)* | |
H11B | 0.151 (4) | 0.097 (3) | 0.5017 (18) | 0.070 (9)* | |
H11C | 0.082 (4) | 0.233 (3) | 0.4981 (18) | 0.078 (10)* | |
N1 | 0.0527 (2) | 0.22380 (17) | 0.81644 (11) | 0.0402 (5) | |
N2 | 0.0324 (3) | 0.1628 (2) | 0.89595 (12) | 0.0443 (5) | |
N3 | 0.1185 (3) | 0.3154 (2) | 0.95063 (14) | 0.0503 (6) | |
S1 | 0.03760 (10) | 0.14256 (6) | 1.06201 (4) | 0.0555 (2) | |
C14 | 0.5379 (3) | 0.16267 (19) | 0.71740 (13) | 0.0329 (5) | |
C15 | 0.5078 (4) | 0.0367 (2) | 0.74221 (14) | 0.0370 (5) | |
C16 | 0.5116 (4) | 0.0211 (2) | 0.83872 (14) | 0.0412 (6) | |
C17 | 0.5457 (3) | 0.1391 (2) | 0.86107 (13) | 0.0375 (5) | |
C18 | 0.5580 (3) | 0.21881 (19) | 0.79294 (13) | 0.0347 (5) | |
C19 | 0.5811 (3) | 0.3483 (2) | 0.78856 (15) | 0.0448 (6) | |
H19A | 0.643811 | 0.356753 | 0.837003 | 0.054* | 0.821 (3) |
H19B | 0.647894 | 0.366698 | 0.738193 | 0.054* | 0.821 (3) |
H19C | 0.685443 | 0.350346 | 0.754772 | 0.054* | 0.179 (3) |
H19D | 0.486229 | 0.399219 | 0.755824 | 0.054* | 0.179 (3) |
C20A | 0.4087 (5) | 0.4364 (3) | 0.7871 (2) | 0.0532 (8) | 0.821 (3) |
H20A | 0.329480 | 0.415962 | 0.754005 | 0.064* | 0.821 (3) |
C21A | 0.3451 (5) | 0.5388 (3) | 0.8238 (2) | 0.0569 (9) | 0.821 (3) |
H21A | 0.229448 | 0.576497 | 0.815022 | 0.068* | 0.821 (3) |
C22A | 0.4385 (6) | 0.5964 (3) | 0.8758 (2) | 0.0621 (10) | 0.821 (3) |
H22A | 0.557592 | 0.550356 | 0.879680 | 0.075* | 0.821 (3) |
H22B | 0.387225 | 0.595899 | 0.932190 | 0.075* | 0.821 (3) |
C23A | 0.4333 (6) | 0.7287 (3) | 0.8386 (3) | 0.0612 (11) | 0.821 (3) |
H23A | 0.474681 | 0.729616 | 0.781112 | 0.092* | 0.821 (3) |
H23B | 0.505314 | 0.763050 | 0.870457 | 0.092* | 0.821 (3) |
H23C | 0.316591 | 0.776477 | 0.840756 | 0.092* | 0.821 (3) |
C20B | 0.592 (2) | 0.4084 (12) | 0.8561 (9) | 0.0532 (8) | 0.179 (3) |
H20B | 0.682753 | 0.377545 | 0.892534 | 0.064* | 0.179 (3) |
C21B | 0.479 (2) | 0.5069 (15) | 0.8714 (11) | 0.0569 (9) | 0.179 (3) |
H21B | 0.516842 | 0.521502 | 0.922436 | 0.068* | 0.179 (3) |
C22B | 0.319 (3) | 0.6156 (17) | 0.8557 (11) | 0.0621 (10) | 0.179 (3) |
H22C | 0.239982 | 0.592198 | 0.820463 | 0.075* | 0.179 (3) |
H22D | 0.260444 | 0.632136 | 0.909131 | 0.075* | 0.179 (3) |
C23B | 0.366 (3) | 0.728 (2) | 0.8152 (14) | 0.0612 (11) | 0.179 (3) |
H23D | 0.363076 | 0.783573 | 0.856476 | 0.092* | 0.179 (3) |
H23E | 0.284292 | 0.766305 | 0.772294 | 0.092* | 0.179 (3) |
H23F | 0.479632 | 0.707879 | 0.790243 | 0.092* | 0.179 (3) |
C24 | 0.5633 (5) | 0.1554 (3) | 0.95104 (15) | 0.0526 (7) | |
C25 | 0.5613 (3) | 0.2125 (2) | 0.49665 (13) | 0.0354 (5) | |
C26 | 0.6433 (4) | 0.3925 (2) | 0.41676 (15) | 0.0529 (7) | |
H26A | 0.739134 | 0.344372 | 0.387775 | 0.079* | |
H26B | 0.673244 | 0.465559 | 0.430318 | 0.079* | |
H26C | 0.544756 | 0.414694 | 0.381308 | 0.079* | |
H3 | 0.508 (3) | 0.089 (3) | 0.5819 (16) | 0.052 (8)* | |
H4 | 0.611 (3) | 0.348 (2) | 0.5401 (16) | 0.048 (7)* | |
H17A | 0.599 (3) | −0.050 (2) | 0.8611 (15) | 0.053 (7)* | |
H17B | 0.401 (3) | 0.004 (2) | 0.8647 (15) | 0.050 (7)* | |
H18A | 0.590 (3) | −0.023 (2) | 0.7182 (14) | 0.044 (7)* | |
H18B | 0.398 (3) | 0.032 (2) | 0.7211 (15) | 0.048 (7)* | |
H24A | 0.573 (4) | 0.238 (3) | 0.960 (2) | 0.095 (11)* | |
H24B | 0.459 (4) | 0.138 (3) | 0.9862 (18) | 0.070 (9)* | |
H24C | 0.662 (4) | 0.096 (3) | 0.9751 (19) | 0.078 (10)* | |
N4 | 0.5513 (2) | 0.22004 (16) | 0.64328 (11) | 0.0370 (4) | |
N5 | 0.5353 (3) | 0.15779 (19) | 0.57504 (11) | 0.0384 (5) | |
N6 | 0.6022 (3) | 0.32130 (18) | 0.49376 (13) | 0.0453 (5) | |
S2 | 0.54338 (9) | 0.14458 (6) | 0.41094 (3) | 0.04489 (19) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0328 (13) | 0.0353 (12) | 0.0357 (12) | −0.0050 (10) | −0.0016 (9) | −0.0056 (9) |
C2 | 0.0442 (15) | 0.0375 (13) | 0.0337 (12) | −0.0094 (11) | 0.0011 (11) | −0.0002 (10) |
C3 | 0.0490 (16) | 0.0385 (14) | 0.0375 (13) | −0.0090 (12) | 0.0019 (11) | −0.0076 (10) |
C4 | 0.0383 (13) | 0.0390 (13) | 0.0335 (12) | −0.0059 (10) | 0.0031 (10) | −0.0035 (9) |
C5 | 0.0373 (13) | 0.0366 (13) | 0.0340 (12) | −0.0063 (10) | −0.0003 (9) | −0.0028 (9) |
C6 | 0.0495 (16) | 0.0426 (14) | 0.0425 (15) | −0.0161 (12) | −0.0001 (13) | −0.0023 (11) |
C7 | 0.0600 (18) | 0.0396 (15) | 0.0477 (16) | −0.0185 (13) | −0.0049 (13) | 0.0053 (11) |
C8 | 0.0541 (18) | 0.0418 (16) | 0.075 (2) | −0.0109 (13) | −0.0013 (15) | 0.0083 (14) |
C9 | 0.111 (3) | 0.0500 (19) | 0.064 (2) | −0.0098 (19) | 0.033 (2) | −0.0092 (15) |
C10 | 0.078 (2) | 0.0518 (19) | 0.067 (2) | −0.0093 (17) | 0.0050 (19) | −0.0087 (15) |
C11 | 0.0462 (15) | 0.0418 (14) | 0.0355 (13) | −0.0086 (11) | −0.0052 (10) | −0.0072 (10) |
C12 | 0.063 (2) | 0.0497 (17) | 0.0366 (14) | −0.0105 (15) | 0.0044 (13) | −0.0067 (12) |
C13 | 0.083 (2) | 0.0542 (17) | 0.0518 (16) | −0.0235 (15) | −0.0136 (14) | −0.0132 (13) |
N1 | 0.0460 (12) | 0.0425 (11) | 0.0324 (10) | −0.0114 (9) | −0.0009 (8) | −0.0029 (8) |
N2 | 0.0604 (14) | 0.0447 (13) | 0.0321 (11) | −0.0210 (11) | −0.0027 (9) | −0.0035 (9) |
N3 | 0.0715 (16) | 0.0471 (13) | 0.0372 (13) | −0.0233 (11) | −0.0059 (11) | −0.0036 (10) |
S1 | 0.0842 (5) | 0.0544 (4) | 0.0327 (3) | −0.0261 (4) | −0.0033 (3) | −0.0034 (3) |
C14 | 0.0371 (13) | 0.0325 (12) | 0.0292 (11) | −0.0085 (10) | 0.0009 (9) | −0.0039 (9) |
C15 | 0.0450 (15) | 0.0325 (13) | 0.0335 (12) | −0.0087 (11) | 0.0003 (11) | −0.0045 (9) |
C16 | 0.0585 (17) | 0.0331 (13) | 0.0319 (12) | −0.0119 (12) | 0.0020 (12) | −0.0014 (9) |
C17 | 0.0463 (14) | 0.0353 (12) | 0.0307 (12) | −0.0085 (10) | 0.0020 (10) | −0.0064 (9) |
C18 | 0.0404 (13) | 0.0338 (12) | 0.0315 (11) | −0.0110 (10) | 0.0006 (9) | −0.0057 (9) |
C19 | 0.0614 (17) | 0.0410 (14) | 0.0381 (13) | −0.0233 (12) | −0.0009 (11) | −0.0059 (10) |
C20A | 0.071 (2) | 0.0345 (16) | 0.0559 (19) | −0.0156 (15) | −0.0056 (16) | −0.0041 (13) |
C21A | 0.054 (2) | 0.0441 (19) | 0.072 (2) | −0.0135 (16) | −0.0031 (16) | −0.0019 (16) |
C22A | 0.089 (3) | 0.052 (2) | 0.049 (2) | −0.024 (2) | −0.004 (2) | −0.0035 (15) |
C23A | 0.092 (4) | 0.0384 (17) | 0.057 (3) | −0.023 (2) | −0.008 (2) | −0.0053 (17) |
C20B | 0.071 (2) | 0.0345 (16) | 0.0559 (19) | −0.0156 (15) | −0.0056 (16) | −0.0041 (13) |
C21B | 0.054 (2) | 0.0441 (19) | 0.072 (2) | −0.0135 (16) | −0.0031 (16) | −0.0019 (16) |
C22B | 0.089 (3) | 0.052 (2) | 0.049 (2) | −0.024 (2) | −0.004 (2) | −0.0035 (15) |
C23B | 0.092 (4) | 0.0384 (17) | 0.057 (3) | −0.023 (2) | −0.008 (2) | −0.0053 (17) |
C24 | 0.079 (2) | 0.0511 (18) | 0.0284 (13) | −0.0152 (16) | −0.0032 (14) | −0.0050 (11) |
C25 | 0.0385 (13) | 0.0341 (12) | 0.0324 (12) | −0.0075 (10) | 0.0000 (9) | −0.0013 (9) |
C26 | 0.0690 (18) | 0.0466 (15) | 0.0443 (14) | −0.0222 (13) | 0.0037 (13) | 0.0056 (11) |
N4 | 0.0457 (12) | 0.0375 (11) | 0.0302 (10) | −0.0129 (9) | −0.0012 (8) | −0.0067 (8) |
N5 | 0.0550 (13) | 0.0338 (11) | 0.0287 (10) | −0.0147 (10) | 0.0006 (8) | −0.0044 (8) |
N6 | 0.0667 (15) | 0.0414 (12) | 0.0314 (11) | −0.0209 (10) | 0.0021 (10) | −0.0027 (9) |
S2 | 0.0637 (4) | 0.0434 (4) | 0.0286 (3) | −0.0142 (3) | −0.0008 (3) | −0.0043 (2) |
Geometric parameters (Å, º) top
C1—N1 | 1.285 (3) | C16—H17A | 0.98 (3) |
C1—C5 | 1.461 (3) | C16—H17B | 1.00 (3) |
C1—C2 | 1.504 (3) | C17—C18 | 1.341 (3) |
C2—C3 | 1.533 (3) | C17—C24 | 1.492 (3) |
C2—H5A | 1.00 (3) | C18—C19 | 1.506 (3) |
C2—H5B | 0.97 (3) | C19—C20B | 1.359 (14) |
C3—C4 | 1.500 (3) | C19—C20A | 1.493 (4) |
C3—H4A | 0.96 (2) | C19—H19A | 0.9700 |
C3—H4B | 0.95 (2) | C19—H19B | 0.9700 |
C4—C5 | 1.342 (3) | C19—H19C | 0.9700 |
C4—C12 | 1.488 (3) | C19—H19D | 0.9700 |
C5—C6 | 1.509 (3) | C20A—C21A | 1.339 (5) |
C6—C7 | 1.498 (4) | C20A—H20A | 0.9300 |
C6—H6A | 0.97 (2) | C21A—C22A | 1.445 (5) |
C6—H6B | 0.92 (3) | C21A—H21A | 0.9300 |
C7—C8 | 1.323 (4) | C22A—C23A | 1.530 (5) |
C7—H7 | 0.93 (3) | C22A—H22A | 0.9700 |
C8—C9 | 1.488 (5) | C22A—H22B | 0.9700 |
C8—H8 | 0.96 (3) | C23A—H23A | 0.9600 |
C9—C10 | 1.505 (5) | C23A—H23B | 0.9600 |
C9—H9A | 1.07 (4) | C23A—H23C | 0.9600 |
C9—H9B | 1.00 (4) | C20B—C21B | 1.29 (2) |
C10—H10A | 1.00 (4) | C20B—H20B | 0.9300 |
C10—H10B | 0.93 (4) | C21B—C22B | 1.56 (3) |
C10—H10C | 0.96 (4) | C21B—H21B | 0.9300 |
C11—N3 | 1.329 (3) | C22B—C23B | 1.47 (3) |
C11—N2 | 1.351 (3) | C22B—H22C | 0.9700 |
C11—S1 | 1.680 (2) | C22B—H22D | 0.9700 |
C12—H11A | 1.02 (3) | C23B—H23D | 0.9600 |
C12—H11B | 0.91 (3) | C23B—H23E | 0.9600 |
C12—H11C | 0.96 (3) | C23B—H23F | 0.9600 |
C13—N3 | 1.455 (3) | C24—H24A | 0.97 (4) |
C13—H13A | 0.9600 | C24—H24B | 1.02 (3) |
C13—H13B | 0.9600 | C24—H24C | 0.97 (3) |
C13—H13C | 0.9600 | C25—N6 | 1.335 (3) |
N1—N2 | 1.392 (3) | C25—N5 | 1.357 (3) |
N2—H1 | 0.81 (3) | C25—S2 | 1.678 (2) |
N3—H2 | 0.83 (3) | C26—N6 | 1.453 (3) |
C14—N4 | 1.292 (3) | C26—H26A | 0.9600 |
C14—C18 | 1.463 (3) | C26—H26B | 0.9600 |
C14—C15 | 1.498 (3) | C26—H26C | 0.9600 |
C15—C16 | 1.535 (3) | N4—N5 | 1.394 (2) |
C15—H18A | 0.93 (2) | N5—H3 | 0.84 (3) |
C15—H18B | 0.97 (3) | N6—H4 | 0.85 (3) |
C16—C17 | 1.505 (3) | | |
| | | |
N1—C1—C5 | 122.2 (2) | C17—C16—H17B | 112.7 (14) |
N1—C1—C2 | 129.2 (2) | C15—C16—H17B | 111.6 (14) |
C5—C1—C2 | 108.56 (18) | H17A—C16—H17B | 104 (2) |
C1—C2—C3 | 104.79 (19) | C18—C17—C24 | 127.8 (2) |
C1—C2—H5A | 111.1 (15) | C18—C17—C16 | 112.35 (19) |
C3—C2—H5A | 113.8 (15) | C24—C17—C16 | 119.8 (2) |
C1—C2—H5B | 114.0 (16) | C17—C18—C14 | 109.11 (19) |
C3—C2—H5B | 111.5 (15) | C17—C18—C19 | 128.8 (2) |
H5A—C2—H5B | 102 (2) | C14—C18—C19 | 122.04 (19) |
C4—C3—C2 | 104.5 (2) | C20B—C19—C18 | 125.2 (6) |
C4—C3—H4A | 111.7 (14) | C20A—C19—C18 | 109.9 (2) |
C2—C3—H4A | 112.7 (14) | C20A—C19—H19A | 109.7 |
C4—C3—H4B | 108.8 (14) | C18—C19—H19A | 109.7 |
C2—C3—H4B | 112.6 (14) | C20A—C19—H19B | 109.7 |
H4A—C3—H4B | 107 (2) | C18—C19—H19B | 109.7 |
C5—C4—C12 | 127.4 (2) | H19A—C19—H19B | 108.2 |
C5—C4—C3 | 112.30 (19) | C20B—C19—H19C | 106.0 |
C12—C4—C3 | 120.3 (2) | C18—C19—H19C | 106.0 |
C4—C5—C1 | 109.8 (2) | C20B—C19—H19D | 106.0 |
C4—C5—C6 | 127.5 (2) | C18—C19—H19D | 106.0 |
C1—C5—C6 | 122.7 (2) | H19C—C19—H19D | 106.3 |
C7—C6—C5 | 114.0 (2) | C21A—C20A—C19 | 133.1 (3) |
C7—C6—H6A | 110.1 (13) | C21A—C20A—H20A | 113.5 |
C5—C6—H6A | 111.0 (13) | C19—C20A—H20A | 113.5 |
C7—C6—H6B | 107.0 (16) | C20A—C21A—C22A | 126.4 (4) |
C5—C6—H6B | 110.0 (17) | C20A—C21A—H21A | 116.8 |
H6A—C6—H6B | 104 (2) | C22A—C21A—H21A | 116.8 |
C8—C7—C6 | 127.3 (3) | C21A—C22A—C23A | 110.4 (3) |
C8—C7—H7 | 119.7 (17) | C21A—C22A—H22A | 109.6 |
C6—C7—H7 | 112.9 (17) | C23A—C22A—H22A | 109.6 |
C7—C8—C9 | 128.0 (3) | C21A—C22A—H22B | 109.6 |
C7—C8—H8 | 117.7 (16) | C23A—C22A—H22B | 109.6 |
C9—C8—H8 | 114.3 (15) | H22A—C22A—H22B | 108.1 |
C8—C9—C10 | 113.3 (3) | C22A—C23A—H23A | 109.5 |
C8—C9—H9A | 106 (2) | C22A—C23A—H23B | 109.5 |
C10—C9—H9A | 112 (2) | H23A—C23A—H23B | 109.5 |
C8—C9—H9B | 107 (2) | C22A—C23A—H23C | 109.5 |
C10—C9—H9B | 109 (2) | H23A—C23A—H23C | 109.5 |
H9A—C9—H9B | 110 (3) | H23B—C23A—H23C | 109.5 |
C9—C10—H10A | 113.2 (19) | C21B—C20B—C19 | 122.2 (14) |
C9—C10—H10B | 113 (2) | C21B—C20B—H20B | 118.9 |
H10A—C10—H10B | 107 (3) | C19—C20B—H20B | 118.9 |
C9—C10—H10C | 110 (2) | C20B—C21B—C22B | 157.0 (17) |
H10A—C10—H10C | 105 (3) | C20B—C21B—H21B | 101.5 |
H10B—C10—H10C | 108 (3) | C22B—C21B—H21B | 101.5 |
N3—C11—N2 | 116.2 (2) | C23B—C22B—C21B | 112.7 (18) |
N3—C11—S1 | 122.86 (18) | C23B—C22B—H22C | 109.0 |
N2—C11—S1 | 120.97 (19) | C21B—C22B—H22C | 109.0 |
C4—C12—H11A | 109.5 (17) | C23B—C22B—H22D | 109.0 |
C4—C12—H11B | 111.9 (18) | C21B—C22B—H22D | 109.0 |
H11A—C12—H11B | 108 (2) | H22C—C22B—H22D | 107.8 |
C4—C12—H11C | 112.6 (18) | C22B—C23B—H23D | 109.5 |
H11A—C12—H11C | 110 (2) | C22B—C23B—H23E | 109.5 |
H11B—C12—H11C | 105 (3) | H23D—C23B—H23E | 109.5 |
N3—C13—H13A | 109.5 | C22B—C23B—H23F | 109.5 |
N3—C13—H13B | 109.5 | H23D—C23B—H23F | 109.5 |
H13A—C13—H13B | 109.5 | H23E—C23B—H23F | 109.5 |
N3—C13—H13C | 109.5 | C17—C24—H24A | 114 (2) |
H13A—C13—H13C | 109.5 | C17—C24—H24B | 110.5 (16) |
H13B—C13—H13C | 109.5 | H24A—C24—H24B | 108 (3) |
C1—N1—N2 | 116.5 (2) | C17—C24—H24C | 110.6 (18) |
C11—N2—N1 | 119.4 (2) | H24A—C24—H24C | 109 (3) |
C11—N2—H1 | 119.8 (19) | H24B—C24—H24C | 105 (2) |
N1—N2—H1 | 120.8 (19) | N6—C25—N5 | 115.3 (2) |
C11—N3—C13 | 123.6 (2) | N6—C25—S2 | 123.71 (17) |
C11—N3—H2 | 118 (2) | N5—C25—S2 | 120.96 (17) |
C13—N3—H2 | 118 (2) | N6—C26—H26A | 109.5 |
N4—C14—C18 | 120.8 (2) | N6—C26—H26B | 109.5 |
N4—C14—C15 | 129.58 (19) | H26A—C26—H26B | 109.5 |
C18—C14—C15 | 109.57 (18) | N6—C26—H26C | 109.5 |
C14—C15—C16 | 104.14 (19) | H26A—C26—H26C | 109.5 |
C14—C15—H18A | 112.0 (15) | H26B—C26—H26C | 109.5 |
C16—C15—H18A | 112.9 (14) | C14—N4—N5 | 116.71 (18) |
C14—C15—H18B | 109.4 (14) | C25—N5—N4 | 117.8 (2) |
C16—C15—H18B | 112.9 (14) | C25—N5—H3 | 120.8 (17) |
H18A—C15—H18B | 106 (2) | N4—N5—H3 | 121.4 (17) |
C17—C16—C15 | 104.81 (19) | C25—N6—C26 | 124.3 (2) |
C17—C16—H17A | 111.6 (15) | C25—N6—H4 | 117.6 (17) |
C15—C16—H17A | 112.8 (14) | C26—N6—H4 | 118.0 (18) |
| | | |
N1—C1—C2—C3 | −177.8 (2) | C15—C16—C17—C18 | 1.3 (3) |
C5—C1—C2—C3 | 0.0 (3) | C15—C16—C17—C24 | −178.2 (2) |
C1—C2—C3—C4 | 1.2 (3) | C24—C17—C18—C14 | 178.0 (2) |
C2—C3—C4—C5 | −2.2 (3) | C16—C17—C18—C14 | −1.4 (3) |
C2—C3—C4—C12 | 177.1 (2) | C24—C17—C18—C19 | −4.4 (4) |
C12—C4—C5—C1 | −176.9 (2) | C16—C17—C18—C19 | 176.2 (2) |
C3—C4—C5—C1 | 2.3 (3) | N4—C14—C18—C17 | −177.4 (2) |
C12—C4—C5—C6 | 2.3 (4) | C15—C14—C18—C17 | 0.9 (3) |
C3—C4—C5—C6 | −178.5 (2) | N4—C14—C18—C19 | 4.8 (3) |
N1—C1—C5—C4 | 176.6 (2) | C15—C14—C18—C19 | −176.9 (2) |
C2—C1—C5—C4 | −1.4 (3) | C17—C18—C19—C20B | −0.8 (9) |
N1—C1—C5—C6 | −2.7 (3) | C14—C18—C19—C20B | 176.5 (9) |
C2—C1—C5—C6 | 179.3 (2) | C17—C18—C19—C20A | −91.4 (3) |
C4—C5—C6—C7 | 73.9 (3) | C14—C18—C19—C20A | 85.9 (3) |
C1—C5—C6—C7 | −107.0 (3) | C18—C19—C20A—C21A | 139.9 (4) |
C5—C6—C7—C8 | 114.6 (3) | C19—C20A—C21A—C22A | 2.8 (6) |
C6—C7—C8—C9 | −2.1 (5) | C20A—C21A—C22A—C23A | 121.9 (4) |
C7—C8—C9—C10 | 128.0 (4) | C18—C19—C20B—C21B | −117.6 (13) |
C5—C1—N1—N2 | −179.33 (19) | C19—C20B—C21B—C22B | −4 (5) |
C2—C1—N1—N2 | −1.8 (4) | C20B—C21B—C22B—C23B | −95 (4) |
N3—C11—N2—N1 | −1.2 (3) | C18—C14—N4—N5 | 178.16 (19) |
S1—C11—N2—N1 | 178.55 (17) | C15—C14—N4—N5 | 0.2 (4) |
C1—N1—N2—C11 | 173.8 (2) | N6—C25—N5—N4 | 0.8 (3) |
N2—C11—N3—C13 | −175.1 (2) | S2—C25—N5—N4 | −179.57 (16) |
S1—C11—N3—C13 | 5.1 (4) | C14—N4—N5—C25 | −175.3 (2) |
N4—C14—C15—C16 | 178.1 (2) | N5—C25—N6—C26 | 176.9 (2) |
C18—C14—C15—C16 | −0.1 (3) | S2—C25—N6—C26 | −2.7 (4) |
C14—C15—C16—C17 | −0.6 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1···S1i | 0.81 (3) | 2.80 (3) | 3.591 (2) | 167 (2) |
C2—H5B···S1i | 0.97 (3) | 2.90 (3) | 3.457 (2) | 117.4 (18) |
N5—H3···S2ii | 0.84 (3) | 2.75 (3) | 3.585 (2) | 172 (2) |
C15—H18A···S2ii | 0.93 (2) | 2.98 (2) | 3.472 (2) | 115.0 (17) |
Symmetry codes: (i) −x, −y, −z+2; (ii) −x+1, −y, −z+1. |
Selected geometric parameters (Å, °) for the two crystallographically
independent
cis-jasmone 4-methylthiosemicarbazone molecules, JMTSC-1 and
JMTSC-2 topCompound | Atom chain | Torsion angle | Atom chain | Torsion angle |
JMTSC-1 | N1/N2/C11/N3 | -1.2 (3) | C5/C6/C7/C8 | 114.6 (3) |
JMTSC-1 | N1/N2/C11/S1 | 178.55 (17) | C7/C8/C9/C10 | 128.0 (4) |
JMTSC-2 | N4/N5/C25/N6 | 0.8 (3) | C18/C19/C20A/C21A | 139.9 (4) |
JMTSC-2 | N4/N5/C25/S2 | -179.57 (16) | C18/C19/C20B/C21B | -117.6 (13) |
| | | C20A/C21A/C22A/C23A | 121.9 (4) |
| | | C20B/C21B/C22B/C23B | -95 (4) |
| | | | |
| Fragment | Max. deviationa | r.m.s.d. | Angleb |
JMTSC-1 | N1/N2/C11/S1/N3 | -0.0115 (16) [N2] | 0.0078 | |
JMTSC-1 | C1-C5 ring | 0.0130 (16) [C4] | 0.0089 | 8.9 (1) |
JMTSC-2 | N4/N5/C25/S2/N6 | 0.0052 (14) [N5] | 0.0031 | |
JMTSC-2 | C14-C18 ring | 0.0078 (16) [C17] | 0.0054 | 6.3 (1) |
| | | | |
| Bond lengthsc | N—N | N—C | C=S |
JMTSC-1 | | 1.392 (3) | 1.351 (3) | 1.680 (2) |
JMTSC-2 | | 1.394 (2) | 1.357 (3) | 1.678 (2) |
Notes:
(a) The maximum deviation from the mean plane through the selected
atoms; (b) angle to previous plane;
(c) bond lengths for the N1/N2/C11/S1 and N4/N5/C25/S2 entities. |