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The monodeprotonated Schiff base ligand in the title compound, [Sn(CH3)(C14H19N4S)Cl2], N,N′,S-chelates to the Sn atom, which is six-coordinated in an octa­hedral environment. The three coordinating atoms along with the methyl C atom comprise a square plane, above and below which are positioned the Cl atoms. The amino group is a hydrogen-bond donor to a Cl atom of an adjacent mol­ecule, the hydrogen bond giving rise to a helical chain extending parallel to [100].

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810014443/bt5250sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536810014443/bt5250Isup2.hkl
Contains datablock I

CCDC reference: 777886

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.005 Å
  • R factor = 0.021
  • wR factor = 0.054
  • Data-to-parameter ratio = 21.0

checkCIF/PLATON results

No syntax errors found



Alert level B PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C13
Alert level C PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.39 Ratio PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C11 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C14 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C15 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C10
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.49 From the CIF: _reflns_number_total 4498 Count of symmetry unique reflns 2554 Completeness (_total/calc) 176.12% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1944 Fraction of Friedel pairs measured 0.761 Are heavy atom types Z>Si present yes PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature 293 K PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 16 C1 -SN1 -N2 -C7 1.90 0.90 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 21 C1 -SN1 -N2 -N3 -177.30 0.80 1.555 1.555 1.555 1.555
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 5 ALERT level C = Check and explain 5 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Comment top

The mono-deprotonated anion of 2-acetylpyridine 4-cyclohexyl thiosemicarbazone is a ligand that N,N',S-binds to metal atoms (Joseph et al., 2004). Whereas similar ligands have been complexed with diorganotin and triorganotin systems, the monoorganotin analogues have not been so extensively studied. The mono-deprotonated Schiff-base ligand in SnCl2(CH3)(C14H19N4S) N,N',S-chelates to the tin atom, which is six-coordinate in an octahedral environment (Scheme I, Fig. 1). The three coordinating atoms along with the methyl carbon comprise a square plane, above and below which are positioned the chlorine atoms.

Related literature top

For the crystal structures of other metal derivatives of the Schiff base, see: Joseph et al. (2004); Kovala-Demertzi et al. (2007).

Experimental top

2-Acetylpyridine 4-cyclohexyl thiosemicarbazone was synthesized by using a literature method (Joseph et al., 2004). The compound (0.28 g, 1 mmol) was dissolved in dry methanol (10 ml) in a Schlenk apparatus under a nitrogen atmosphere. Methyltin trichoride (0.24 g, 1 mmol) dissolved in methanol (10 ml) was added. The mixture was heated for an hour. The solvent was removed and the yellow compound recrystallized from chloroform/methanol (1:1) in 70% yield, m.p. 551-553 K.

Refinement top

Carbon-bound H-atoms were placed in calculated positions (C—H 0.93 to 0.978 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2 to 1.5U(C).

The amino H-atom was located in a difference Fourier map, and was refined isotropically with a distance restraint of N–H 0.84±0.01 Å.

Structure description top

The mono-deprotonated anion of 2-acetylpyridine 4-cyclohexyl thiosemicarbazone is a ligand that N,N',S-binds to metal atoms (Joseph et al., 2004). Whereas similar ligands have been complexed with diorganotin and triorganotin systems, the monoorganotin analogues have not been so extensively studied. The mono-deprotonated Schiff-base ligand in SnCl2(CH3)(C14H19N4S) N,N',S-chelates to the tin atom, which is six-coordinate in an octahedral environment (Scheme I, Fig. 1). The three coordinating atoms along with the methyl carbon comprise a square plane, above and below which are positioned the chlorine atoms.

For the crystal structures of other metal derivatives of the Schiff base, see: Joseph et al. (2004); Kovala-Demertzi et al. (2007).

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. Anisotropic displacement ellipsoid plot (Barbour, 2001) of SnCl2(CH3)(C14H19N4S) at the 50% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.
Dichlorido{4-cyclohexyl-1-[1-(2-pyridyl- κN)ethylidene]thiosemicarbazidato- κ2N1,S}methyltin(IV) top
Crystal data top
[Sn(CH3)(C14H19N4S)Cl2]F(000) = 960
Mr = 480.02Dx = 1.621 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 8827 reflections
a = 9.2016 (5) Åθ = 2.3–27.7°
b = 12.2434 (7) ŵ = 1.68 mm1
c = 17.4544 (10) ÅT = 293 K
V = 1966.39 (19) Å3Prism, yellow
Z = 40.30 × 0.25 × 0.20 mm
Data collection top
Bruker SMART APEX
diffractometer
4498 independent reflections
Radiation source: fine-focus sealed tube4223 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1111
Tmin = 0.633, Tmax = 0.730k = 1515
18838 measured reflectionsl = 2222
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.021H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.054 w = 1/[σ2(Fo2) + (0.032P)2 + 0.1524P]
where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4498 reflectionsΔρmax = 0.29 e Å3
214 parametersΔρmin = 0.41 e Å3
1 restraintAbsolute structure: Flack (1983), 1493 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.020 (17)
Crystal data top
[Sn(CH3)(C14H19N4S)Cl2]V = 1966.39 (19) Å3
Mr = 480.02Z = 4
Orthorhombic, P212121Mo Kα radiation
a = 9.2016 (5) ŵ = 1.68 mm1
b = 12.2434 (7) ÅT = 293 K
c = 17.4544 (10) Å0.30 × 0.25 × 0.20 mm
Data collection top
Bruker SMART APEX
diffractometer
4498 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
4223 reflections with I > 2σ(I)
Tmin = 0.633, Tmax = 0.730Rint = 0.025
18838 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.021H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.054Δρmax = 0.29 e Å3
S = 1.02Δρmin = 0.41 e Å3
4498 reflectionsAbsolute structure: Flack (1983), 1493 Friedel pairs
214 parametersAbsolute structure parameter: 0.020 (17)
1 restraint
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Sn11.061930 (18)0.634199 (13)0.160119 (10)0.03748 (6)
Cl10.97585 (8)0.54078 (6)0.04139 (4)0.04922 (17)
Cl21.10680 (12)0.73379 (8)0.28090 (5)0.0724 (3)
S11.22890 (7)0.75142 (6)0.08461 (5)0.04529 (16)
N10.8388 (3)0.59846 (18)0.20943 (13)0.0411 (5)
N20.9157 (2)0.77150 (16)0.12825 (11)0.0351 (5)
N30.9636 (2)0.85860 (18)0.08811 (12)0.0398 (5)
N41.1533 (3)0.9409 (2)0.02881 (19)0.0602 (7)
H41.2404 (17)0.944 (3)0.0111 (18)0.063 (11)*
C11.1749 (4)0.4916 (3)0.1978 (2)0.0687 (10)
H1A1.17550.48930.25270.103*
H1B1.27310.49360.17920.103*
H1C1.12700.42770.17830.103*
C20.8073 (4)0.5114 (2)0.25205 (17)0.0524 (7)
H20.87830.45860.26020.063*
C30.6713 (4)0.4978 (3)0.28448 (19)0.0599 (9)
H30.65130.43700.31460.072*
C40.5676 (4)0.5746 (3)0.27171 (17)0.0589 (8)
H4A0.47610.56750.29380.071*
C50.5985 (3)0.6628 (2)0.22600 (16)0.0490 (7)
H50.52710.71460.21570.059*
C60.7362 (3)0.6743 (2)0.19527 (14)0.0372 (6)
C70.7802 (3)0.7679 (2)0.14765 (14)0.0363 (5)
C80.6739 (3)0.8530 (3)0.12494 (18)0.0517 (7)
H8A0.72400.91210.10020.077*
H8B0.62490.87990.16970.077*
H8C0.60420.82220.09020.077*
C91.1021 (3)0.8555 (2)0.06741 (14)0.0400 (6)
C101.0719 (4)1.0403 (2)0.0096 (2)0.0595 (8)
H100.97251.03280.02900.071*
C111.1403 (6)1.1369 (3)0.0467 (2)0.0941 (16)
H11A1.24211.14040.03240.113*
H11B1.13511.12880.10190.113*
C121.0651 (7)1.2431 (3)0.0232 (2)0.0936 (15)
H12A0.96711.24360.04370.112*
H12B1.11711.30440.04520.112*
C131.0586 (6)1.2563 (3)0.0593 (2)0.0750 (11)
H13A1.15611.26880.07860.090*
H13B1.00071.32030.07120.090*
C140.9968 (8)1.1623 (3)0.0982 (3)0.123 (2)
H14A1.00861.17170.15310.147*
H14B0.89351.15920.08750.147*
C151.0660 (8)1.0544 (3)0.0745 (2)0.115 (2)
H15A1.01090.99470.09670.138*
H15B1.16391.05090.09500.138*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Sn10.03555 (9)0.03065 (8)0.04623 (9)0.00216 (7)0.00566 (7)0.00345 (7)
Cl10.0458 (4)0.0469 (4)0.0550 (4)0.0002 (3)0.0045 (3)0.0088 (3)
Cl20.0986 (7)0.0686 (5)0.0500 (4)0.0184 (5)0.0149 (4)0.0065 (4)
S10.0341 (3)0.0362 (3)0.0656 (4)0.0016 (3)0.0043 (3)0.0044 (3)
N10.0436 (13)0.0366 (11)0.0431 (11)0.0039 (10)0.0010 (9)0.0059 (9)
N20.0395 (12)0.0274 (10)0.0383 (10)0.0034 (9)0.0030 (9)0.0019 (8)
N30.0371 (11)0.0332 (10)0.0491 (11)0.0028 (10)0.0050 (9)0.0071 (10)
N40.0442 (15)0.0431 (14)0.093 (2)0.0067 (11)0.0179 (14)0.0239 (14)
C10.060 (2)0.0515 (19)0.095 (3)0.0150 (17)0.021 (2)0.0203 (18)
C20.061 (2)0.0445 (16)0.0518 (16)0.0074 (15)0.0060 (15)0.0125 (13)
C30.067 (2)0.058 (2)0.0554 (17)0.0250 (18)0.0023 (16)0.0152 (15)
C40.0554 (18)0.067 (2)0.0543 (16)0.0200 (19)0.0087 (16)0.0020 (14)
C50.0451 (17)0.0505 (17)0.0513 (15)0.0044 (12)0.0106 (13)0.0029 (12)
C60.0389 (14)0.0353 (13)0.0375 (12)0.0017 (11)0.0023 (11)0.0067 (10)
C70.0371 (13)0.0348 (12)0.0371 (13)0.0036 (10)0.0032 (10)0.0028 (10)
C80.0415 (15)0.0502 (17)0.0632 (16)0.0141 (14)0.0045 (13)0.0060 (14)
C90.0426 (14)0.0317 (13)0.0458 (13)0.0002 (12)0.0011 (10)0.0017 (11)
C100.0435 (15)0.0419 (15)0.093 (2)0.0065 (15)0.0162 (18)0.0256 (15)
C110.159 (5)0.059 (2)0.064 (2)0.046 (3)0.036 (3)0.0167 (19)
C120.154 (4)0.052 (2)0.075 (2)0.032 (3)0.021 (3)0.0103 (19)
C130.092 (3)0.0485 (18)0.085 (2)0.013 (2)0.013 (2)0.0252 (17)
C140.214 (7)0.071 (3)0.083 (3)0.057 (3)0.064 (4)0.008 (2)
C150.197 (6)0.058 (2)0.090 (3)0.049 (3)0.067 (4)0.022 (2)
Geometric parameters (Å, º) top
Sn1—C12.136 (3)C5—C61.383 (4)
Sn1—N12.269 (2)C5—H50.9300
Sn1—N22.224 (2)C6—C71.473 (4)
Sn1—S12.4814 (7)C7—C81.483 (4)
Sn1—Cl12.4960 (7)C8—H8A0.9600
Sn1—Cl22.4701 (8)C8—H8B0.9600
S1—C91.753 (3)C8—H8C0.9600
N1—C21.332 (4)C10—C151.479 (5)
N1—C61.348 (3)C10—C111.488 (6)
N2—C71.292 (3)C10—H100.9800
N2—N31.350 (3)C11—C121.529 (5)
N3—C91.326 (3)C11—H11A0.9700
N4—C91.330 (4)C11—H11B0.9700
N4—C101.468 (4)C12—C131.450 (5)
N4—H40.861 (10)C12—H12A0.9700
C1—H1A0.9600C12—H12B0.9700
C1—H1B0.9600C13—C141.453 (6)
C1—H1C0.9600C13—H13A0.9700
C2—C31.383 (5)C13—H13B0.9700
C2—H20.9300C14—C151.523 (5)
C3—C41.359 (5)C14—H14A0.9700
C3—H30.9300C14—H14B0.9700
C4—C51.372 (4)C15—H15A0.9700
C4—H4A0.9300C15—H15B0.9700
C1—Sn1—N2171.66 (12)N2—C7—C8122.8 (2)
C1—Sn1—N199.56 (12)C6—C7—C8121.1 (2)
N2—Sn1—N172.12 (8)C7—C8—H8A109.5
C1—Sn1—Cl293.43 (11)C7—C8—H8B109.5
N2—Sn1—Cl286.65 (6)H8A—C8—H8B109.5
N1—Sn1—Cl285.57 (6)C7—C8—H8C109.5
C1—Sn1—S1109.56 (11)H8A—C8—H8C109.5
N2—Sn1—S178.74 (6)H8B—C8—H8C109.5
N1—Sn1—S1150.85 (6)N3—C9—N4117.1 (3)
Cl2—Sn1—S193.69 (3)N3—C9—S1127.9 (2)
C1—Sn1—Cl192.01 (11)N4—C9—S1115.0 (2)
N2—Sn1—Cl186.94 (6)N4—C10—C15110.0 (3)
N1—Sn1—Cl186.53 (6)N4—C10—C11110.1 (3)
Cl2—Sn1—Cl1171.05 (3)C15—C10—C11110.8 (3)
S1—Sn1—Cl191.18 (3)N4—C10—H10108.6
C9—S1—Sn195.70 (9)C15—C10—H10108.6
C2—N1—C6120.1 (3)C11—C10—H10108.6
C2—N1—Sn1124.3 (2)C10—C11—C12111.5 (3)
C6—N1—Sn1115.58 (17)C10—C11—H11A109.3
C7—N2—N3118.5 (2)C12—C11—H11A109.3
C7—N2—Sn1119.51 (17)C10—C11—H11B109.3
N3—N2—Sn1121.94 (16)C12—C11—H11B109.3
C9—N3—N2115.7 (2)H11A—C11—H11B108.0
C9—N4—C10126.0 (3)C13—C12—C11112.3 (3)
C9—N4—H4123 (2)C13—C12—H12A109.1
C10—N4—H4111 (2)C11—C12—H12A109.1
Sn1—C1—H1A109.5C13—C12—H12B109.1
Sn1—C1—H1B109.5C11—C12—H12B109.1
H1A—C1—H1B109.5H12A—C12—H12B107.9
Sn1—C1—H1C109.5C12—C13—C14113.1 (4)
H1A—C1—H1C109.5C12—C13—H13A109.0
H1B—C1—H1C109.5C14—C13—H13A109.0
N1—C2—C3121.5 (3)C12—C13—H13B109.0
N1—C2—H2119.3C14—C13—H13B109.0
C3—C2—H2119.3H13A—C13—H13B107.8
C4—C3—C2119.0 (3)C13—C14—C15113.3 (4)
C4—C3—H3120.5C13—C14—H14A108.9
C2—C3—H3120.5C15—C14—H14A108.9
C3—C4—C5119.6 (3)C13—C14—H14B108.9
C3—C4—H4A120.2C15—C14—H14B108.9
C5—C4—H4A120.2H14A—C14—H14B107.7
C4—C5—C6119.7 (3)C10—C15—C14112.7 (4)
C4—C5—H5120.1C10—C15—H15A109.0
C6—C5—H5120.1C14—C15—H15A109.0
N1—C6—C5120.1 (2)C10—C15—H15B109.0
N1—C6—C7116.6 (2)C14—C15—H15B109.0
C5—C6—C7123.4 (2)H15A—C15—H15B107.8
N2—C7—C6116.1 (2)
C1—Sn1—S1—C9178.73 (15)C3—C4—C5—C61.9 (5)
N2—Sn1—S1—C92.07 (10)C2—N1—C6—C51.0 (4)
N1—Sn1—S1—C93.74 (16)Sn1—N1—C6—C5176.8 (2)
Cl2—Sn1—S1—C983.77 (9)C2—N1—C6—C7180.0 (2)
Cl1—Sn1—S1—C988.72 (9)Sn1—N1—C6—C72.1 (3)
C1—Sn1—N1—C22.9 (3)C4—C5—C6—N10.8 (4)
N2—Sn1—N1—C2177.8 (2)C4—C5—C6—C7178.0 (3)
Cl2—Sn1—N1—C289.9 (2)N3—N2—C7—C6176.5 (2)
S1—Sn1—N1—C2179.50 (18)Sn1—N2—C7—C64.4 (3)
Cl1—Sn1—N1—C294.3 (2)N3—N2—C7—C82.6 (4)
C1—Sn1—N1—C6179.4 (2)Sn1—N2—C7—C8176.5 (2)
N2—Sn1—N1—C60.01 (17)N1—C6—C7—N24.3 (3)
Cl2—Sn1—N1—C687.89 (18)C5—C6—C7—N2174.6 (2)
S1—Sn1—N1—C61.7 (3)N1—C6—C7—C8176.6 (2)
Cl1—Sn1—N1—C687.92 (18)C5—C6—C7—C84.5 (4)
C1—Sn1—N2—C71.9 (9)N2—N3—C9—N4179.0 (3)
N1—Sn1—N2—C72.46 (18)N2—N3—C9—S11.1 (3)
Cl2—Sn1—N2—C788.88 (19)C10—N4—C9—N32.6 (5)
S1—Sn1—N2—C7176.68 (19)C10—N4—C9—S1177.5 (3)
Cl1—Sn1—N2—C784.87 (19)Sn1—S1—C9—N32.6 (3)
C1—Sn1—N2—N3177.3 (8)Sn1—S1—C9—N4177.5 (2)
N1—Sn1—N2—N3178.4 (2)C9—N4—C10—C15120.0 (5)
Cl2—Sn1—N2—N391.99 (17)C9—N4—C10—C11117.6 (4)
S1—Sn1—N2—N32.45 (17)N4—C10—C11—C12175.8 (4)
Cl1—Sn1—N2—N394.26 (17)C15—C10—C11—C1253.9 (6)
C7—N2—N3—C9177.5 (2)C10—C11—C12—C1354.4 (7)
Sn1—N2—N3—C91.6 (3)C11—C12—C13—C1452.4 (7)
C6—N1—C2—C31.8 (4)C12—C13—C14—C1550.4 (8)
Sn1—N1—C2—C3175.8 (2)N4—C10—C15—C14174.0 (5)
N1—C2—C3—C40.7 (5)C11—C10—C15—C1452.0 (7)
C2—C3—C4—C51.2 (5)C13—C14—C15—C1050.5 (8)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···Cl1i0.86 (1)2.36 (1)3.219 (3)177 (3)
Symmetry code: (i) x+1/2, y+3/2, z.

Experimental details

Crystal data
Chemical formula[Sn(CH3)(C14H19N4S)Cl2]
Mr480.02
Crystal system, space groupOrthorhombic, P212121
Temperature (K)293
a, b, c (Å)9.2016 (5), 12.2434 (7), 17.4544 (10)
V3)1966.39 (19)
Z4
Radiation typeMo Kα
µ (mm1)1.68
Crystal size (mm)0.30 × 0.25 × 0.20
Data collection
DiffractometerBruker SMART APEX
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 1996)
Tmin, Tmax0.633, 0.730
No. of measured, independent and
observed [I > 2σ(I)] reflections
18838, 4498, 4223
Rint0.025
(sin θ/λ)max1)0.649
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.021, 0.054, 1.02
No. of reflections4498
No. of parameters214
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.29, 0.41
Absolute structureFlack (1983), 1493 Friedel pairs
Absolute structure parameter0.020 (17)

Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).

Selected bond lengths (Å) top
Sn1—C12.136 (3)Sn1—S12.4814 (7)
Sn1—N12.269 (2)Sn1—Cl12.4960 (7)
Sn1—N22.224 (2)Sn1—Cl22.4701 (8)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···Cl1i0.86 (1)2.36 (1)3.219 (3)177 (3)
Symmetry code: (i) x+1/2, y+3/2, z.
 

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