Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536813012324/bt6901sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536813012324/bt6901Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S1600536813012324/bt6901Isup3.cml |
CCDC reference: 954901
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.040
- wR factor = 0.120
- Data-to-parameter ratio = 21.4
checkCIF/PLATON results
No syntax errors found
Alert level G PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF ? PLAT128_ALERT_4_G Note: Alternate Setting of Space-group P21/c . P21/n PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature 293 K PLAT793_ALERT_4_G The Model has Chirality at C4 (Verify) .... S PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 16
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 0 ALERT level C = Check. Ensure it is not caused by an omission or oversight 6 ALERT level G = General information/check it is not something unexpected 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
To an ice cold solution of tetrahydrobenzodiazepine (1.9 g, 10 m.mol) in anhydrous benzene (50 ml), triethylamine (4 ml, 30 m.mol) and chloroacetylchloride (2.4 ml, 30 m.mol) were added and stirred at room temperature. The resulting solid was purified by recrystallization from benzene to yield pale yellow crystals.
The H atom bonded to N was freely refined. C-bound H atoms were positioned geometrically (C–H = 0.93–0.98 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for all other H atoms.
Data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
C14H19ClN2O | F(000) = 568 |
Mr = 266.76 | Dx = 1.255 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3568 reflections |
a = 10.3971 (3) Å | θ = 2.5–28.5° |
b = 12.2589 (3) Å | µ = 0.26 mm−1 |
c = 11.0994 (3) Å | T = 293 K |
β = 93.953 (1)° | Block, pale yellow |
V = 1411.33 (7) Å3 | 0.23 × 0.22 × 0.20 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 3568 independent reflections |
Radiation source: fine-focus sealed tube | 2767 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ω and ϕ scans | θmax = 28.5°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −11→13 |
Tmin = 0.942, Tmax = 0.949 | k = −16→14 |
13339 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0584P)2 + 0.253P] where P = (Fo2 + 2Fc2)/3 |
3568 reflections | (Δ/σ)max < 0.001 |
167 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C14H19ClN2O | V = 1411.33 (7) Å3 |
Mr = 266.76 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.3971 (3) Å | µ = 0.26 mm−1 |
b = 12.2589 (3) Å | T = 293 K |
c = 11.0994 (3) Å | 0.23 × 0.22 × 0.20 mm |
β = 93.953 (1)° |
Bruker SMART APEXII CCD diffractometer | 3568 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2767 reflections with I > 2σ(I) |
Tmin = 0.942, Tmax = 0.949 | Rint = 0.018 |
13339 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.22 e Å−3 |
3568 reflections | Δρmin = −0.27 e Å−3 |
167 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C2 | 0.51697 (13) | 0.25960 (11) | 0.45502 (13) | 0.0430 (3) | |
C3 | 0.42704 (13) | 0.16143 (11) | 0.43872 (12) | 0.0418 (3) | |
H3A | 0.4703 | 0.0989 | 0.4767 | 0.050* | |
H3B | 0.3511 | 0.1759 | 0.4822 | 0.050* | |
C4 | 0.38266 (12) | 0.12997 (12) | 0.31006 (12) | 0.0421 (3) | |
H4 | 0.3297 | 0.1897 | 0.2751 | 0.051* | |
C6 | 0.61213 (12) | 0.07242 (11) | 0.29286 (11) | 0.0378 (3) | |
C7 | 0.65316 (15) | −0.02988 (12) | 0.25761 (13) | 0.0472 (3) | |
H7 | 0.5998 | −0.0720 | 0.2055 | 0.057* | |
C8 | 0.77192 (16) | −0.06946 (13) | 0.29912 (15) | 0.0557 (4) | |
H8 | 0.7995 | −0.1377 | 0.2749 | 0.067* | |
C9 | 0.84918 (16) | −0.00669 (15) | 0.37691 (16) | 0.0584 (4) | |
H9 | 0.9311 | −0.0314 | 0.4026 | 0.070* | |
C10 | 0.80708 (14) | 0.09221 (13) | 0.41727 (13) | 0.0490 (3) | |
H10 | 0.8600 | 0.1321 | 0.4720 | 0.059* | |
C11 | 0.68638 (12) | 0.13399 (11) | 0.37769 (11) | 0.0373 (3) | |
C12 | 0.5320 (2) | 0.28786 (16) | 0.58975 (16) | 0.0687 (5) | |
H12A | 0.5650 | 0.2257 | 0.6344 | 0.103* | |
H12B | 0.4496 | 0.3078 | 0.6171 | 0.103* | |
H12C | 0.5908 | 0.3478 | 0.6021 | 0.103* | |
C13 | 0.46332 (16) | 0.35866 (13) | 0.38470 (19) | 0.0635 (5) | |
H13A | 0.5217 | 0.4189 | 0.3970 | 0.095* | |
H13B | 0.3810 | 0.3780 | 0.4127 | 0.095* | |
H13C | 0.4535 | 0.3413 | 0.3002 | 0.095* | |
C14 | 0.30135 (17) | 0.02757 (15) | 0.30537 (17) | 0.0618 (4) | |
H14A | 0.2749 | 0.0108 | 0.2229 | 0.093* | |
H14B | 0.2265 | 0.0389 | 0.3499 | 0.093* | |
H14C | 0.3510 | −0.0319 | 0.3404 | 0.093* | |
C15 | 0.48304 (13) | 0.14054 (13) | 0.11892 (12) | 0.0449 (3) | |
C16 | 0.60674 (15) | 0.13616 (16) | 0.05310 (14) | 0.0554 (4) | |
H16A | 0.6253 | 0.0611 | 0.0327 | 0.067* | |
H16B | 0.6780 | 0.1633 | 0.1057 | 0.067* | |
N1 | 0.64710 (12) | 0.23518 (10) | 0.41521 (12) | 0.0446 (3) | |
H1 | 0.7043 (18) | 0.2675 (14) | 0.4580 (16) | 0.057 (5)* | |
N5 | 0.49529 (10) | 0.11740 (9) | 0.23764 (9) | 0.0394 (3) | |
O1 | 0.38003 (10) | 0.16453 (13) | 0.06665 (10) | 0.0683 (4) | |
Cl1 | 0.59194 (4) | 0.21546 (4) | −0.07992 (4) | 0.06677 (17) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C2 | 0.0408 (7) | 0.0429 (7) | 0.0454 (7) | 0.0064 (6) | 0.0046 (6) | −0.0003 (6) |
C3 | 0.0388 (7) | 0.0465 (7) | 0.0405 (7) | 0.0047 (6) | 0.0059 (5) | 0.0050 (5) |
C4 | 0.0304 (6) | 0.0524 (8) | 0.0436 (7) | 0.0024 (6) | 0.0021 (5) | 0.0048 (6) |
C6 | 0.0312 (6) | 0.0460 (7) | 0.0359 (6) | 0.0047 (5) | −0.0011 (5) | 0.0016 (5) |
C7 | 0.0464 (8) | 0.0492 (8) | 0.0458 (7) | 0.0031 (6) | 0.0013 (6) | −0.0063 (6) |
C8 | 0.0541 (9) | 0.0532 (8) | 0.0599 (9) | 0.0185 (7) | 0.0053 (7) | −0.0055 (7) |
C9 | 0.0413 (8) | 0.0722 (10) | 0.0605 (9) | 0.0220 (7) | −0.0050 (7) | −0.0028 (8) |
C10 | 0.0371 (7) | 0.0616 (9) | 0.0467 (7) | 0.0073 (6) | −0.0082 (6) | −0.0028 (6) |
C11 | 0.0330 (6) | 0.0436 (7) | 0.0350 (6) | 0.0037 (5) | 0.0009 (5) | 0.0029 (5) |
C12 | 0.0760 (12) | 0.0747 (12) | 0.0563 (10) | −0.0039 (9) | 0.0107 (9) | −0.0193 (8) |
C13 | 0.0508 (9) | 0.0459 (9) | 0.0940 (13) | 0.0107 (7) | 0.0068 (9) | 0.0146 (8) |
C14 | 0.0490 (9) | 0.0716 (11) | 0.0649 (10) | −0.0161 (8) | 0.0047 (7) | −0.0021 (8) |
C15 | 0.0334 (7) | 0.0613 (9) | 0.0393 (7) | −0.0025 (6) | −0.0036 (5) | 0.0043 (6) |
C16 | 0.0420 (8) | 0.0808 (11) | 0.0434 (7) | −0.0005 (7) | 0.0018 (6) | 0.0056 (7) |
N1 | 0.0350 (6) | 0.0442 (6) | 0.0537 (7) | 0.0002 (5) | −0.0026 (5) | −0.0073 (5) |
N5 | 0.0294 (5) | 0.0513 (6) | 0.0369 (5) | 0.0030 (5) | −0.0025 (4) | 0.0014 (5) |
O1 | 0.0380 (6) | 0.1162 (10) | 0.0492 (6) | 0.0051 (6) | −0.0072 (5) | 0.0230 (6) |
Cl1 | 0.0581 (3) | 0.0963 (4) | 0.0461 (2) | −0.0130 (2) | 0.00504 (18) | 0.01223 (19) |
C2—N1 | 1.4825 (18) | C10—C11 | 1.3979 (18) |
C2—C3 | 1.527 (2) | C10—H10 | 0.9300 |
C2—C13 | 1.528 (2) | C11—N1 | 1.3793 (17) |
C2—C12 | 1.532 (2) | C12—H12A | 0.9600 |
C3—C4 | 1.5199 (19) | C12—H12B | 0.9600 |
C3—H3A | 0.9700 | C12—H12C | 0.9600 |
C3—H3B | 0.9700 | C13—H13A | 0.9600 |
C4—N5 | 1.4734 (16) | C13—H13B | 0.9600 |
C4—C14 | 1.512 (2) | C13—H13C | 0.9600 |
C4—H4 | 0.9800 | C14—H14A | 0.9600 |
C6—C7 | 1.3896 (19) | C14—H14B | 0.9600 |
C6—C11 | 1.3971 (18) | C14—H14C | 0.9600 |
C6—N5 | 1.4327 (16) | C15—O1 | 1.2184 (17) |
C7—C8 | 1.376 (2) | C15—N5 | 1.3453 (17) |
C7—H7 | 0.9300 | C15—C16 | 1.523 (2) |
C8—C9 | 1.374 (2) | C16—Cl1 | 1.7656 (16) |
C8—H8 | 0.9300 | C16—H16A | 0.9700 |
C9—C10 | 1.374 (2) | C16—H16B | 0.9700 |
C9—H9 | 0.9300 | N1—H1 | 0.835 (19) |
N1—C2—C3 | 111.68 (11) | C6—C11—C10 | 117.15 (12) |
N1—C2—C13 | 108.47 (12) | C2—C12—H12A | 109.5 |
C3—C2—C13 | 111.52 (12) | C2—C12—H12B | 109.5 |
N1—C2—C12 | 107.62 (13) | H12A—C12—H12B | 109.5 |
C3—C2—C12 | 108.31 (12) | C2—C12—H12C | 109.5 |
C13—C2—C12 | 109.14 (14) | H12A—C12—H12C | 109.5 |
C4—C3—C2 | 117.06 (11) | H12B—C12—H12C | 109.5 |
C4—C3—H3A | 108.0 | C2—C13—H13A | 109.5 |
C2—C3—H3A | 108.0 | C2—C13—H13B | 109.5 |
C4—C3—H3B | 108.0 | H13A—C13—H13B | 109.5 |
C2—C3—H3B | 108.0 | C2—C13—H13C | 109.5 |
H3A—C3—H3B | 107.3 | H13A—C13—H13C | 109.5 |
N5—C4—C14 | 110.96 (12) | H13B—C13—H13C | 109.5 |
N5—C4—C3 | 109.75 (10) | C4—C14—H14A | 109.5 |
C14—C4—C3 | 112.07 (12) | C4—C14—H14B | 109.5 |
N5—C4—H4 | 108.0 | H14A—C14—H14B | 109.5 |
C14—C4—H4 | 108.0 | C4—C14—H14C | 109.5 |
C3—C4—H4 | 108.0 | H14A—C14—H14C | 109.5 |
C7—C6—C11 | 120.75 (12) | H14B—C14—H14C | 109.5 |
C7—C6—N5 | 119.64 (12) | O1—C15—N5 | 122.55 (13) |
C11—C6—N5 | 119.56 (12) | O1—C15—C16 | 121.58 (13) |
C8—C7—C6 | 120.64 (14) | N5—C15—C16 | 115.87 (12) |
C8—C7—H7 | 119.7 | C15—C16—Cl1 | 110.72 (11) |
C6—C7—H7 | 119.7 | C15—C16—H16A | 109.5 |
C9—C8—C7 | 119.02 (14) | Cl1—C16—H16A | 109.5 |
C9—C8—H8 | 120.5 | C15—C16—H16B | 109.5 |
C7—C8—H8 | 120.5 | Cl1—C16—H16B | 109.5 |
C8—C9—C10 | 120.89 (14) | H16A—C16—H16B | 108.1 |
C8—C9—H9 | 119.6 | C11—N1—C2 | 124.54 (12) |
C10—C9—H9 | 119.6 | C11—N1—H1 | 112.6 (12) |
C9—C10—C11 | 121.33 (14) | C2—N1—H1 | 111.3 (12) |
C9—C10—H10 | 119.3 | C15—N5—C6 | 121.36 (11) |
C11—C10—H10 | 119.3 | C15—N5—C4 | 119.16 (11) |
N1—C11—C6 | 121.87 (12) | C6—N5—C4 | 119.29 (10) |
N1—C11—C10 | 120.84 (12) | ||
N1—C2—C3—C4 | −70.58 (15) | C6—C11—N1—C2 | 48.60 (19) |
C13—C2—C3—C4 | 50.97 (17) | C10—C11—N1—C2 | −135.87 (15) |
C12—C2—C3—C4 | 171.08 (13) | C3—C2—N1—C11 | −5.18 (19) |
C2—C3—C4—N5 | 52.53 (16) | C13—C2—N1—C11 | −128.48 (15) |
C2—C3—C4—C14 | 176.30 (12) | C12—C2—N1—C11 | 113.57 (15) |
C11—C6—C7—C8 | −4.6 (2) | O1—C15—N5—C6 | 169.69 (15) |
N5—C6—C7—C8 | 172.60 (14) | C16—C15—N5—C6 | −10.9 (2) |
C6—C7—C8—C9 | 0.5 (2) | O1—C15—N5—C4 | −5.1 (2) |
C7—C8—C9—C10 | 2.8 (3) | C16—C15—N5—C4 | 174.26 (13) |
C8—C9—C10—C11 | −2.1 (3) | C7—C6—N5—C15 | −63.37 (18) |
C7—C6—C11—N1 | −179.24 (13) | C11—C6—N5—C15 | 113.83 (15) |
N5—C6—C11—N1 | 3.60 (19) | C7—C6—N5—C4 | 111.44 (15) |
C7—C6—C11—C10 | 5.1 (2) | C11—C6—N5—C4 | −71.37 (16) |
N5—C6—C11—C10 | −172.09 (12) | C14—C4—N5—C15 | 86.63 (16) |
C9—C10—C11—N1 | −177.52 (15) | C3—C4—N5—C15 | −148.96 (12) |
C9—C10—C11—C6 | −1.8 (2) | C14—C4—N5—C6 | −88.29 (15) |
O1—C15—C16—Cl1 | 21.9 (2) | C3—C4—N5—C6 | 36.11 (17) |
N5—C15—C16—Cl1 | −157.53 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.835 (19) | 2.276 (19) | 3.1049 (16) | 171.5 (17) |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C14H19ClN2O |
Mr | 266.76 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.3971 (3), 12.2589 (3), 11.0994 (3) |
β (°) | 93.953 (1) |
V (Å3) | 1411.33 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.23 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.942, 0.949 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13339, 3568, 2767 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.672 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.120, 1.07 |
No. of reflections | 3568 |
No. of parameters | 167 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.27 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.835 (19) | 2.276 (19) | 3.1049 (16) | 171.5 (17) |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2. |
Various substituted 1,5-benzodiazepines have been synthesized and their stereochemistry has been reported (Ponnuswamy et al., 2006). Among these, the benzodiazepines act as a class of psychoactive drugs. Benzodiazepines are known for their natural occurrence in filamentous fungi and actinomycetes of the genera pencillium, aspergillus and streptomyces (Rahbaek et al., 1999). Benzodiazepines from aspergillus include asperlicin, which is used for the treatment of gastrointestinal and central nervous system disorders. Against this background and to ascertain the molecular structure and conformation, the X-ray crystal structure determination of the title compound has been carried out.
The ORTEP plot of the molecule is shown in Fig. 1. The chloro substituted benzodiazepine derivative crystallizes in the monoclinic space group P21/n. The diazepine ring system adopts a boat conformation (Kavitha et al., 2012). The puckering parameters (Cremer & Pople, 1975) and the asymmetry parameters (Nardelli, 1983) are: q2=0.9558 (2) Å, q3 = 0.1431 (2) Å, ϕ2 = 16.93 (9)° and Δs(C6)= 25.13 (2)°. The Cl atom of the chloroacetyl group is trans to the N atom of the diazepine ring which is evidenced from the torsion angle [N5—C15—C16—CL1=]-157.5 (1)°. The bond lengths C16—CL1 and C15—O1 [1.770 (2) Å & 1.219 (2) Å] are comparable with the mean value reported in the literature (Allen et al., 1987). The carbonyl group is oriented anti to C6 [C6—N5—C15—O1=] 169.7 (2)° and syn to C4 [C4—N5—C15—O1=] -5.12 (2)°. The crystal packing shows that the molecules form linear chains linked through N—H···O hydrogen bonds. The chains run along the diagonal of the ac plane (Fig. 2).