Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270106013461/av3011sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270106013461/av3011Isup2.hkl |
CCDC reference: 601685
A mixture of 3-hydroxy-2-naphthoic acid (0.075 g, 0.4 mmol) and 4,4'-bipyridine (0.032 g, 0.2 mmol) was stirred in enthanol (10 ml). The solution was kept in air and after several days yellow crystals were obtained with 70% yield.
All H atoms were constrained to ride on their parent atoms with Uiso(H) values of 1.2Ueq(parent atom) (C—H = 0.95 Å).
Data collection: CrystalClear (Rigaku Corporation, 2000); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997).
C11H8O3·0.5C10H8N2 | F(000) = 556 |
Mr = 266.27 | Dx = 1.367 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 8.999 (5) Å | Cell parameters from 2304 reflections |
b = 11.735 (7) Å | θ = 2.9–27.4° |
c = 12.393 (7) Å | µ = 0.10 mm−1 |
β = 98.799 (12)° | T = 293 K |
V = 1293.4 (13) Å3 | Prism, yellow |
Z = 4 | 0.44 × 0.38 × 0.10 mm |
Make and Model?? CCD diffractometer | 2934 independent reflections |
Radiation source: fine-focus sealed tube | 1768 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
Detector resolution: 28.5714 pixels mm-1 | θmax = 27.4°, θmin = 2.3° |
CCD_Profile_fitting scans | h = −11→11 |
Absorption correction: multi-scan ? | k = −13→15 |
Tmin = 0.821, Tmax = 1.000 | l = −15→15 |
9720 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.054 | H-atom parameters constrained |
wR(F2) = 0.158 | w = 1/[σ2(Fo2) + (0.0944P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.96 | (Δ/σ)max < 0.001 |
2934 reflections | Δρmax = 0.27 e Å−3 |
182 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.29 (2) |
C11H8O3·0.5C10H8N2 | V = 1293.4 (13) Å3 |
Mr = 266.27 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.999 (5) Å | µ = 0.10 mm−1 |
b = 11.735 (7) Å | T = 293 K |
c = 12.393 (7) Å | 0.44 × 0.38 × 0.10 mm |
β = 98.799 (12)° |
Make and Model?? CCD diffractometer | 2934 independent reflections |
Absorption correction: multi-scan ? | 1768 reflections with I > 2σ(I) |
Tmin = 0.821, Tmax = 1.000 | Rint = 0.042 |
9720 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.158 | H-atom parameters constrained |
S = 0.96 | Δρmax = 0.27 e Å−3 |
2934 reflections | Δρmin = −0.19 e Å−3 |
182 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.15570 (12) | 0.05389 (12) | 0.22487 (10) | 0.0717 (4) | |
H1 | 0.0643 | 0.0462 | 0.1993 | 0.086* | |
O2 | 0.13676 (15) | 0.19441 (15) | 0.10344 (14) | 0.0983 (5) | |
O3 | 0.37149 (18) | 0.30019 (14) | 0.06488 (12) | 0.0971 (5) | |
H3 | 0.2812 | 0.2792 | 0.0545 | 0.117* | |
N1 | −0.12165 (14) | 0.01352 (13) | 0.13242 (11) | 0.0588 (4) | |
C1 | 0.21090 (19) | 0.13774 (17) | 0.17723 (15) | 0.0633 (5) | |
C2 | 0.37275 (17) | 0.16406 (15) | 0.21240 (14) | 0.0552 (4) | |
C3 | 0.4462 (2) | 0.24535 (16) | 0.15306 (15) | 0.0650 (5) | |
C4 | 0.5967 (2) | 0.26847 (18) | 0.18401 (17) | 0.0754 (6) | |
H4 | 0.6446 | 0.3225 | 0.1438 | 0.091* | |
C5 | 0.68033 (19) | 0.21370 (17) | 0.27386 (16) | 0.0685 (5) | |
C6 | 0.8378 (2) | 0.2340 (2) | 0.3060 (2) | 0.0927 (8) | |
H6 | 0.8886 | 0.2862 | 0.2657 | 0.111* | |
C7 | 0.9147 (2) | 0.1795 (3) | 0.3930 (3) | 0.1102 (10) | |
H7 | 1.0195 | 0.1931 | 0.4122 | 0.132* | |
C8 | 0.8438 (3) | 0.1035 (3) | 0.4555 (2) | 0.1070 (9) | |
H8 | 0.8992 | 0.0681 | 0.5180 | 0.128* | |
C9 | 0.6928 (2) | 0.0803 (2) | 0.42592 (19) | 0.0876 (7) | |
H9 | 0.6451 | 0.0273 | 0.4675 | 0.105* | |
C10 | 0.60855 (18) | 0.13392 (17) | 0.33503 (15) | 0.0646 (5) | |
C11 | 0.45347 (18) | 0.11116 (16) | 0.30113 (14) | 0.0598 (5) | |
H11 | 0.4042 | 0.0577 | 0.3411 | 0.072* | |
C12 | −0.16956 (19) | 0.07572 (18) | 0.04482 (17) | 0.0737 (6) | |
H12 | −0.1002 | 0.1252 | 0.0178 | 0.088* | |
C13 | −0.31515 (18) | 0.07213 (17) | −0.00897 (16) | 0.0692 (6) | |
H13 | −0.3436 | 0.1184 | −0.0716 | 0.083* | |
C14 | −0.22045 (19) | −0.05580 (17) | 0.16810 (16) | 0.0684 (5) | |
H14 | −0.1881 | −0.1016 | 0.2305 | 0.082* | |
C15 | −0.36796 (18) | −0.06393 (16) | 0.11825 (15) | 0.0651 (5) | |
H15 | −0.4344 | −0.1150 | 0.1464 | 0.078* | |
C16 | −0.41996 (15) | 0.00183 (13) | 0.02734 (12) | 0.0482 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0449 (6) | 0.0862 (10) | 0.0820 (9) | −0.0066 (6) | 0.0032 (6) | 0.0061 (7) |
O2 | 0.0602 (8) | 0.1003 (12) | 0.1237 (12) | −0.0072 (7) | −0.0199 (8) | 0.0347 (9) |
O3 | 0.0899 (10) | 0.0976 (12) | 0.0998 (11) | −0.0135 (9) | 0.0014 (8) | 0.0287 (9) |
N1 | 0.0444 (7) | 0.0642 (10) | 0.0676 (9) | −0.0032 (6) | 0.0076 (6) | −0.0012 (7) |
C1 | 0.0491 (9) | 0.0667 (12) | 0.0718 (11) | 0.0013 (8) | 0.0014 (8) | −0.0057 (9) |
C2 | 0.0463 (8) | 0.0570 (10) | 0.0619 (10) | −0.0009 (7) | 0.0075 (8) | −0.0119 (8) |
C3 | 0.0635 (10) | 0.0634 (12) | 0.0676 (11) | −0.0022 (9) | 0.0079 (9) | −0.0051 (9) |
C4 | 0.0646 (11) | 0.0727 (13) | 0.0929 (14) | −0.0166 (10) | 0.0246 (11) | −0.0134 (11) |
C5 | 0.0488 (9) | 0.0717 (12) | 0.0854 (13) | −0.0056 (8) | 0.0114 (9) | −0.0300 (10) |
C6 | 0.0530 (11) | 0.1053 (19) | 0.1207 (18) | −0.0148 (11) | 0.0157 (12) | −0.0519 (15) |
C7 | 0.0480 (11) | 0.141 (3) | 0.135 (2) | 0.0041 (14) | −0.0056 (14) | −0.072 (2) |
C8 | 0.0687 (14) | 0.133 (2) | 0.1091 (19) | 0.0320 (15) | −0.0187 (14) | −0.0380 (17) |
C9 | 0.0679 (12) | 0.1027 (18) | 0.0863 (15) | 0.0162 (11) | −0.0076 (11) | −0.0147 (12) |
C10 | 0.0494 (9) | 0.0725 (13) | 0.0699 (11) | 0.0058 (8) | 0.0022 (8) | −0.0215 (9) |
C11 | 0.0479 (8) | 0.0653 (11) | 0.0658 (11) | −0.0008 (8) | 0.0074 (8) | −0.0056 (8) |
C12 | 0.0465 (9) | 0.0862 (14) | 0.0858 (14) | −0.0163 (9) | 0.0021 (9) | 0.0195 (11) |
C13 | 0.0504 (9) | 0.0788 (14) | 0.0761 (12) | −0.0127 (8) | 0.0023 (8) | 0.0242 (9) |
C14 | 0.0519 (9) | 0.0785 (13) | 0.0722 (12) | −0.0030 (9) | 0.0010 (8) | 0.0154 (9) |
C15 | 0.0484 (8) | 0.0729 (12) | 0.0738 (12) | −0.0094 (8) | 0.0083 (8) | 0.0166 (9) |
C16 | 0.0414 (7) | 0.0500 (9) | 0.0540 (9) | −0.0021 (6) | 0.0103 (6) | −0.0049 (7) |
O1—C1 | 1.286 (2) | C7—C8 | 1.398 (4) |
O1—H1 | 0.8400 | C7—H7 | 0.9500 |
O2—C1 | 1.240 (2) | C8—C9 | 1.379 (3) |
O3—C3 | 1.355 (2) | C8—H8 | 0.9500 |
O3—H3 | 0.8400 | C9—C10 | 1.407 (3) |
N1—C12 | 1.324 (2) | C9—H9 | 0.9500 |
N1—C14 | 1.330 (2) | C10—C11 | 1.420 (2) |
C1—C2 | 1.487 (2) | C11—H11 | 0.9500 |
C2—C11 | 1.370 (2) | C12—C13 | 1.377 (3) |
C2—C3 | 1.427 (3) | C12—H12 | 0.9500 |
C3—C4 | 1.377 (3) | C13—C16 | 1.379 (2) |
C4—C5 | 1.401 (3) | C13—H13 | 0.9500 |
C4—H4 | 0.9500 | C14—C15 | 1.379 (2) |
C5—C10 | 1.421 (3) | C14—H14 | 0.9500 |
C5—C6 | 1.432 (3) | C15—C16 | 1.387 (2) |
C6—C7 | 1.350 (4) | C15—H15 | 0.9500 |
C6—H6 | 0.9500 | C16—C16i | 1.496 (3) |
C1—O1—H1 | 109.5 | C7—C8—H8 | 120.2 |
C3—O3—H3 | 109.5 | C8—C9—C10 | 120.8 (3) |
C12—N1—C14 | 117.34 (14) | C8—C9—H9 | 119.6 |
O2—C1—O1 | 123.16 (16) | C10—C9—H9 | 119.6 |
O2—C1—C2 | 119.81 (17) | C9—C10—C11 | 122.5 (2) |
O1—C1—C2 | 117.01 (16) | C9—C10—C5 | 119.28 (18) |
C11—C2—C3 | 119.08 (15) | C11—C10—C5 | 118.21 (18) |
C11—C2—C1 | 121.08 (16) | C2—C11—C10 | 121.91 (18) |
C3—C2—C1 | 119.84 (16) | C2—C11—H11 | 119.0 |
O3—C3—C4 | 118.45 (18) | C10—C11—H11 | 119.0 |
O3—C3—C2 | 121.45 (16) | N1—C12—C13 | 123.12 (16) |
C4—C3—C2 | 120.09 (18) | N1—C12—H12 | 118.4 |
C3—C4—C5 | 121.13 (19) | C13—C12—H12 | 118.4 |
C3—C4—H4 | 119.4 | C12—C13—C16 | 120.53 (17) |
C5—C4—H4 | 119.4 | C12—C13—H13 | 119.7 |
C4—C5—C10 | 119.57 (16) | C16—C13—H13 | 119.7 |
C4—C5—C6 | 122.2 (2) | N1—C14—C15 | 122.69 (17) |
C10—C5—C6 | 118.2 (2) | N1—C14—H14 | 118.7 |
C7—C6—C5 | 120.5 (2) | C15—C14—H14 | 118.7 |
C7—C6—H6 | 119.7 | C14—C15—C16 | 120.51 (15) |
C5—C6—H6 | 119.7 | C14—C15—H15 | 119.7 |
C6—C7—C8 | 121.5 (2) | C16—C15—H15 | 119.7 |
C6—C7—H7 | 119.2 | C13—C16—C15 | 115.80 (14) |
C8—C7—H7 | 119.2 | C13—C16—C16i | 121.91 (18) |
C9—C8—C7 | 119.6 (3) | C15—C16—C16i | 122.29 (17) |
C9—C8—H8 | 120.2 |
Symmetry code: (i) −x−1, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.84 | 1.79 | 2.625 (2) | 172 |
O3—H3···O2 | 0.84 | 1.81 | 2.557 (2) | 147 |
Experimental details
Crystal data | |
Chemical formula | C11H8O3·0.5C10H8N2 |
Mr | 266.27 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 8.999 (5), 11.735 (7), 12.393 (7) |
β (°) | 98.799 (12) |
V (Å3) | 1293.4 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.44 × 0.38 × 0.10 |
Data collection | |
Diffractometer | Make and Model?? CCD diffractometer |
Absorption correction | Multi-scan |
Tmin, Tmax | 0.821, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9720, 2934, 1768 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.648 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.158, 0.96 |
No. of reflections | 2934 |
No. of parameters | 182 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.19 |
Computer programs: CrystalClear (Rigaku Corporation, 2000), CrystalClear, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997).
O1—C1 | 1.286 (2) | N1—C12 | 1.324 (2) |
O2—C1 | 1.240 (2) | N1—C14 | 1.330 (2) |
O3—C3 | 1.355 (2) | ||
C12—N1—C14 | 117.34 (14) | O1—C1—C2 | 117.01 (16) |
O2—C1—O1 | 123.16 (16) | O3—C3—C4 | 118.45 (18) |
O2—C1—C2 | 119.81 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.84 | 1.79 | 2.625 (2) | 172 |
O3—H3···O2 | 0.84 | 1.81 | 2.557 (2) | 147 |
D—H···A | D—H(Å) | H···A(Å) | D···A(Å) | D—H···A(°) | Symmetry |
C12—H12···O2 | 0.95 | 2.375 | 3.075 | 130 | |
C9—H9···O3 | 0.95 | 2.696 | 3.342 | 126 | 1 − x,y − 1/2,1/2 − z |
C15—H15···Cg1a | 0.95 | 2.858 | 3.755 | 158 | -x,y − 1/2,1/2 − z |
Cg1···Cg2b | 3.480c | 3.630d | 165e | x + 1,y,z |
Notes: (a) Cg1 = Ring C2–C5/C10/C11. (b) Cg(2)= Ring N1/C12/C13/C16/C15/C14. (c) Perpendicular distance of Cg1 on ring 2. (d) Distance between ring Centroids (Å). (e) Angle between the Cg1···Cg2 vector and normal to plane 2. |
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Crystal engineering of organic molecules has been exploited in organic materials and even in active pharmaceutical ingredients (Desiraju, 2003; Almarsson & Zaworotko, 2004). Supramolecular synthons provide an effective strategy for synthesizing the specific organic supramolecular solids (Desiraju,1997). In particular, supramolecular heterosynthons have great advantages in designing the cocrystals of two or more components. For example, Bailey Walsh et al. (2003) inserted 4,4'-bipyridine between carboxylic acid moieties and utilized the pyridine–carboxylic acid heterosynthon to obtain several pharmaceutical cocrystals. Weak C—H···O interaction plays an important role in the heterosynthon. The pyridyl ring of 4,4'-bipyridine is also able to provide other weak interactions, such as π–π and C—H···π interactions. We have treated 4,4'-bipyridine with 3-hydroxy-2-naphthoic acid and obtained the crystalline supramolecular adduct (I), in which the pyridine–carboxylic acid heterosynthon generates a molecular complex which is engineered into a three-dimensional assembly by π–π and C—H···π interactions between pyridyl and naphthoic rings.
X-ray diffraction shows that the centrosymmetric three-component adduct is formed between 3-hydroxy-2-naphthoic acid and 4,4'-bipyridine in 2:1 ratio. The expected pyridine–carboxylic acid heterosynthon contains hydrogen-bonding [N1···O1 = 2.625 (2) A°] and C—H···O interaction (2.375 A°, 130.18°) between pyridyl ring and carboxylic acid group. The hydroxy group is involved in intramolecular hydrogen-bonding [O3···O2 = 2.557 (2) A°] with the carbonyl O atom (Table 2). The 4,4'-bipyridine molcule is located in the center of the adduct and on the inversion center, and the two pyridine rings are coplanar. Moreover, the naphthoic acid rings are parallel to the 4,4'-bipyridine molecule. The crystal packing of the adduct is controlled by two distinct weak interactions between the 4,4'-bipyridine and naphthoic acid rings. One naphthoic acid ring is involved in π–π interactions with a pyridyl ring at (x + 1, y, z) at a centroid–centroid distance of 3.630 Å (Table 3). Two adduct molecules connected together are parallel displaced and along a axis the adduct is linked into a one-dimensional infinite chain by face-to-face π stacking (Fig. 2). There also exists a point-to-face C15—H15···π interaction (H···centroid = 2.858 Å and C15—H15···π= 158°) between the CH group of a pyridyl ring and an adjacent naphthoic acid ring (−x, y − 1/2, 1/2 − z). Moreover, the hydroxy O atom is involved in C9—H9···O3 interactions (2.696 Å and 125.81°) with naphthoic acid rings related by (1 − x, y − 1/2, 1/2 − z). For the whole adduct molecule, the naphthoic acid rings lie in the end and pyridyl rings lie in the middle. Thus, each adduct molecule interacts with eight adjacent molecules in four directions, and each one-dimensional chain resulting from π–π interactions connects four chains through weak C—H ···π and C—H···O interactions into a three-dimensional assembly (Fig. 3), which exhibits intense photoluminescence at 534 nm upon photo-excitation at 365 nm. 3-Hydroxy-2-naphthoic acid exhibits luminescence at 524 nm upon excitation at 365 nm, which shows that the interactions between 3-hydroxy-2-naphthoic acid and 4,4'- bipyridine slightly affect the luminescent property. In conclusion, in the cocrystal 3-hydroxy-2-naphthoic acid interacts with 4,4'-bipyridine in four ways: O—H···N hydrogen-bonding, weak C—H···O, π–π stacking and C—H···π interactions. The four non-covalent interactions together with the C—H···O interactions between naphthoic acid molecules result in a three-dimensional supramolecular assembly. This result also demonstrates the fact that the pyridyl ring is an excellent cocrystal former.