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The amide bond represents one of the most fundamental functional groups in chemistry. The properties of amides are defined by amidic resonance (nN→π*C=O conjugation), which enforces planarity of the six atoms comprising the amide bond. Despite the importance of 4-halo-substituted benzamides in organic synthesis, molecular interactions and medicinal chemistry, the effect of 4-halo-substitution on the properties of the amide bond in N,N-disubstituted benzamides has not been studied. Herein, we report the crystal structures and energetic properties of a full series of 4-halobenzamides. The structures of four 4-halobenzamides (halo = iodo, bromo, chloro and fluoro) in the N-morpholinyl series have been determined, namely 4-[(4-halophenyl)carbonyl]morpholine, C11H12XNO2, for halo = iodo (X = I), bromo (X = Br), chloro (X = Cl) and fluoro (X = F). Computations have been used to determine the effect of halogen substitution on the structures and resonance energies. 4-Iodo-N-morpholinylbenzamide crystallized with a significant distortion of the amide bond (τ + χN = 33°). The present study supports the correlation between the Ar—C(O) axis twist angle and the twist angle of the amide N—C(O) bond. Comparison of resonance energies in synthetically valuable N-morpholinyl and N-piperidinyl amides demonstrates that the O atom of the morpholinyl ring has a negligible effect on amidic resonance in the series.
Supporting information
CCDC references: 1850333; 1538098; 1850324; 1850335
For all structures, data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell refinement: CrysAlis CCD (Oxford Diffraction, 2008); data reduction: CrysAlis CCD (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015b).
4-[(4-Iodophenyl)carbonyl]morpholine (BD268_a)
top
Crystal data top
C11H12INO2 | F(000) = 616 |
Mr = 317.12 | Dx = 1.854 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 10.5193 (3) Å | Cell parameters from 7452 reflections |
b = 12.2078 (4) Å | θ = 3.3–26.0° |
c = 8.8674 (3) Å | µ = 2.80 mm−1 |
β = 93.763 (3)° | T = 100 K |
V = 1136.27 (6) Å3 | Plate, colourless |
Z = 4 | 0.5 × 0.4 × 0.3 mm |
Data collection top
Oxford Diffraction Xcalibur diffractometer | 2207 independent reflections |
Radiation source: fine-focus sealed tube | 2019 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
Detector resolution: 1024 x 1024 with blocks 2 x 2 pixels mm-1 | θmax = 26.0°, θmin = 3.3° |
ω–scan | h = −12→12 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010) | k = −15→10 |
Tmin = 0.518, Tmax = 1.000 | l = −10→10 |
7452 measured reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.017 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.044 | w = 1/[σ2(Fo2) + (0.0253P)2 + 0.2684P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
2207 reflections | Δρmax = 0.42 e Å−3 |
144 parameters | Δρmin = −0.52 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.25090 (19) | 0.49287 (16) | 0.2721 (2) | 0.0151 (4) | |
H1 | 0.2332 | 0.5498 | 0.2043 | 0.018* | |
C2 | 0.3772 (2) | 0.46360 (16) | 0.3106 (2) | 0.0132 (4) | |
C3 | 0.4023 (2) | 0.38039 (16) | 0.4160 (2) | 0.0141 (4) | |
H3 | 0.4862 | 0.3612 | 0.4436 | 0.017* | |
C4 | 0.3037 (2) | 0.32591 (16) | 0.4801 (2) | 0.0148 (4) | |
H4 | 0.3212 | 0.2714 | 0.5517 | 0.018* | |
C5 | 0.1784 (2) | 0.35334 (16) | 0.4365 (2) | 0.0150 (4) | |
C6 | 0.1518 (2) | 0.43780 (17) | 0.3340 (2) | 0.0164 (4) | |
H6 | 0.0678 | 0.4572 | 0.3071 | 0.020* | |
N9 | 0.58356 (16) | 0.47781 (13) | 0.19736 (19) | 0.0133 (4) | |
O8 | 0.46903 (13) | 0.63067 (11) | 0.24035 (16) | 0.0163 (3) | |
C7 | 0.47978 (18) | 0.53010 (16) | 0.2454 (2) | 0.0124 (4) | |
C10 | 0.6874 (2) | 0.54433 (17) | 0.1424 (2) | 0.0149 (4) | |
H10A | 0.6855 | 0.6172 | 0.1859 | 0.018* | |
H10B | 0.6769 | 0.5511 | 0.0333 | 0.018* | |
C11 | 0.8136 (2) | 0.48979 (16) | 0.1873 (3) | 0.0191 (5) | |
H11A | 0.8820 | 0.5313 | 0.1462 | 0.023* | |
H11B | 0.8273 | 0.4902 | 0.2965 | 0.023* | |
O12 | 0.81748 (14) | 0.37967 (12) | 0.13401 (19) | 0.0229 (4) | |
C13 | 0.7192 (2) | 0.31622 (17) | 0.1958 (3) | 0.0191 (5) | |
H13A | 0.7318 | 0.3155 | 0.3051 | 0.023* | |
H13B | 0.7239 | 0.2413 | 0.1602 | 0.023* | |
C14 | 0.5893 (2) | 0.36269 (16) | 0.1504 (2) | 0.0144 (4) | |
H14A | 0.576 (2) | 0.3567 (17) | 0.042 (2) | 0.011 (5)* | |
H14B | 0.522 (2) | 0.322 (2) | 0.192 (3) | 0.020 (6)* | |
I15 | 0.02903 (2) | 0.26585 (2) | 0.52607 (2) | 0.01825 (6) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0153 (11) | 0.0142 (10) | 0.0158 (10) | 0.0032 (8) | −0.0003 (8) | −0.0004 (8) |
C2 | 0.0145 (11) | 0.0119 (9) | 0.0134 (10) | 0.0017 (8) | 0.0026 (8) | −0.0035 (8) |
C3 | 0.0118 (10) | 0.0151 (10) | 0.0154 (10) | 0.0040 (8) | 0.0009 (8) | −0.0024 (8) |
C4 | 0.0181 (11) | 0.0134 (10) | 0.0131 (10) | 0.0024 (8) | 0.0015 (8) | −0.0006 (8) |
C5 | 0.0153 (11) | 0.0136 (10) | 0.0167 (10) | −0.0014 (8) | 0.0065 (8) | −0.0033 (8) |
C6 | 0.0111 (11) | 0.0183 (10) | 0.0198 (11) | 0.0034 (8) | 0.0003 (8) | −0.0004 (8) |
N9 | 0.0113 (9) | 0.0088 (8) | 0.0200 (9) | −0.0012 (7) | 0.0036 (7) | 0.0002 (7) |
O8 | 0.0161 (8) | 0.0112 (7) | 0.0218 (8) | 0.0019 (6) | 0.0019 (6) | −0.0007 (6) |
C7 | 0.0122 (11) | 0.0137 (9) | 0.0111 (9) | 0.0009 (8) | −0.0013 (8) | 0.0001 (8) |
C10 | 0.0152 (11) | 0.0128 (10) | 0.0172 (10) | −0.0020 (8) | 0.0052 (8) | 0.0011 (8) |
C11 | 0.0140 (11) | 0.0167 (11) | 0.0272 (12) | −0.0017 (9) | 0.0062 (9) | 0.0014 (9) |
O12 | 0.0145 (8) | 0.0155 (7) | 0.0403 (10) | 0.0022 (6) | 0.0129 (7) | 0.0027 (7) |
C13 | 0.0154 (11) | 0.0126 (10) | 0.0302 (12) | 0.0009 (9) | 0.0082 (9) | 0.0043 (9) |
C14 | 0.0152 (11) | 0.0104 (10) | 0.0183 (11) | −0.0012 (8) | 0.0060 (8) | 0.0001 (8) |
I15 | 0.01462 (9) | 0.01995 (9) | 0.02094 (9) | −0.00115 (5) | 0.00690 (6) | 0.00172 (5) |
Geometric parameters (Å, º) top
C1—C6 | 1.384 (3) | N9—C10 | 1.470 (3) |
C1—C2 | 1.397 (3) | O8—C7 | 1.233 (2) |
C1—H1 | 0.9300 | C10—C11 | 1.515 (3) |
C2—C3 | 1.394 (3) | C10—H10A | 0.9700 |
C2—C7 | 1.496 (3) | C10—H10B | 0.9700 |
C3—C4 | 1.385 (3) | C11—O12 | 1.426 (2) |
C3—H3 | 0.9300 | C11—H11A | 0.9700 |
C4—C5 | 1.390 (3) | C11—H11B | 0.9700 |
C4—H4 | 0.9300 | O12—C13 | 1.430 (2) |
C5—C6 | 1.391 (3) | C13—C14 | 1.509 (3) |
C5—I15 | 2.098 (2) | C13—H13A | 0.9700 |
C6—H6 | 0.9300 | C13—H13B | 0.9700 |
N9—C7 | 1.357 (2) | C14—H14A | 0.97 (2) |
N9—C14 | 1.468 (3) | C14—H14B | 0.96 (2) |
| | | |
C6—C1—C2 | 120.56 (19) | N9—C10—H10A | 109.9 |
C6—C1—H1 | 119.7 | C11—C10—H10A | 109.9 |
C2—C1—H1 | 119.7 | N9—C10—H10B | 109.9 |
C3—C2—C1 | 119.1 (2) | C11—C10—H10B | 109.9 |
C3—C2—C7 | 123.02 (18) | H10A—C10—H10B | 108.3 |
C1—C2—C7 | 117.73 (18) | O12—C11—C10 | 111.76 (17) |
C4—C3—C2 | 120.74 (19) | O12—C11—H11A | 109.3 |
C4—C3—H3 | 119.6 | C10—C11—H11A | 109.3 |
C2—C3—H3 | 119.6 | O12—C11—H11B | 109.3 |
C3—C4—C5 | 119.50 (19) | C10—C11—H11B | 109.3 |
C3—C4—H4 | 120.2 | H11A—C11—H11B | 107.9 |
C5—C4—H4 | 120.2 | C11—O12—C13 | 110.29 (16) |
C4—C5—C6 | 120.44 (19) | O12—C13—C14 | 111.03 (17) |
C4—C5—I15 | 119.48 (15) | O12—C13—H13A | 109.4 |
C6—C5—I15 | 120.07 (16) | C14—C13—H13A | 109.4 |
C1—C6—C5 | 119.64 (19) | O12—C13—H13B | 109.4 |
C1—C6—H6 | 120.2 | C14—C13—H13B | 109.4 |
C5—C6—H6 | 120.2 | H13A—C13—H13B | 108.0 |
C7—N9—C14 | 126.05 (17) | N9—C14—C13 | 109.75 (17) |
C7—N9—C10 | 118.35 (17) | N9—C14—H14A | 110.4 (13) |
C14—N9—C10 | 112.92 (16) | C13—C14—H14A | 107.7 (13) |
O8—C7—N9 | 122.04 (18) | N9—C14—H14B | 110.2 (14) |
O8—C7—C2 | 119.17 (18) | C13—C14—H14B | 112.4 (14) |
N9—C7—C2 | 118.77 (17) | H14A—C14—H14B | 106.3 (19) |
N9—C10—C11 | 109.13 (16) | | |
| | | |
C6—C1—C2—C3 | −2.0 (3) | C10—N9—C7—C2 | −176.20 (17) |
C6—C1—C2—C7 | −177.07 (18) | C3—C2—C7—O8 | −132.8 (2) |
C1—C2—C3—C4 | 1.1 (3) | C1—C2—C7—O8 | 42.1 (3) |
C7—C2—C3—C4 | 175.86 (18) | C3—C2—C7—N9 | 45.5 (3) |
C2—C3—C4—C5 | 1.2 (3) | C1—C2—C7—N9 | −139.70 (19) |
C3—C4—C5—C6 | −2.6 (3) | C7—N9—C10—C11 | 144.61 (18) |
C3—C4—C5—I15 | 177.16 (14) | C14—N9—C10—C11 | −52.8 (2) |
C2—C1—C6—C5 | 0.7 (3) | N9—C10—C11—O12 | 55.7 (2) |
C4—C5—C6—C1 | 1.7 (3) | C10—C11—O12—C13 | −60.2 (2) |
I15—C5—C6—C1 | −178.08 (15) | C11—O12—C13—C14 | 60.2 (2) |
C14—N9—C7—O8 | −158.05 (19) | C7—N9—C14—C13 | −145.47 (19) |
C10—N9—C7—O8 | 2.0 (3) | C10—N9—C14—C13 | 53.6 (2) |
C14—N9—C7—C2 | 23.8 (3) | O12—C13—C14—N9 | −56.3 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14A···O8i | 0.97 (2) | 2.52 (2) | 3.480 (3) | 171.7 (18) |
C14—H14B···O8ii | 0.96 (2) | 2.41 (2) | 3.069 (2) | 125.6 (18) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, y−1/2, −z+1/2. |
4-[(4-Bromophenyl)carbonyl]morpholine (BD144_a)
top
Crystal data top
C11H12BrNO2 | Dx = 1.596 Mg m−3 |
Mr = 270.13 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, P31 | Cell parameters from 5805 reflections |
a = 9.9577 (2) Å | θ = 3.1–26.0° |
c = 9.8213 (2) Å | µ = 3.64 mm−1 |
V = 843.37 (4) Å3 | T = 100 K |
Z = 3 | Plate, colourless |
F(000) = 408 | 0.5 × 0.45 × 0.4 mm |
Data collection top
Oxford Diffraction Xcalibur diffractometer | 2180 independent reflections |
Radiation source: fine-focus sealed tube | 2129 reflections with I > 2σ(I) |
Detector resolution: 1024 x 1024 with blocks 2 x 2 pixels mm-1 | Rint = 0.046 |
ω–scan | θmax = 26.0°, θmin = 3.1° |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010) | h = −10→12 |
Tmin = 0.776, Tmax = 1.000 | k = −12→10 |
5805 measured reflections | l = −12→11 |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.023 | w = 1/[σ2(Fo2) + (0.0358P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.057 | (Δ/σ)max < 0.001 |
S = 1.05 | Δρmax = 0.32 e Å−3 |
2180 reflections | Δρmin = −0.38 e Å−3 |
150 parameters | Absolute structure: Flack x determined using 1007 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
1 restraint | Absolute structure parameter: −0.007 (9) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Br1 | 0.42153 (4) | 0.07632 (4) | 0.08969 (4) | 0.02375 (13) | |
N1 | 0.2551 (4) | 0.3767 (4) | 0.6554 (3) | 0.0185 (6) | |
O1 | 0.4186 (3) | 0.5968 (3) | 0.5427 (3) | 0.0229 (6) | |
C1 | 0.3508 (4) | 0.4544 (4) | 0.5518 (4) | 0.0171 (7) | |
C3 | 0.1615 (4) | 0.2074 (4) | 0.6681 (4) | 0.0199 (8) | |
H3A | 0.197 (4) | 0.165 (4) | 0.605 (4) | 0.027 (12)* | |
H3B | 0.0542 | 0.1797 | 0.6511 | 0.023 (11)* | |
C2 | 0.2206 (5) | 0.4597 (4) | 0.7606 (4) | 0.0208 (8) | |
H2B | 0.287 (4) | 0.571 (4) | 0.753 (3) | 0.023 (11)* | |
H2A | 0.1098 | 0.4456 | 0.7443 | 0.025 (12)* | |
O2 | 0.1320 (3) | 0.2354 (3) | 0.9102 (3) | 0.0235 (6) | |
C5 | 0.1773 (5) | 0.1614 (5) | 0.8105 (4) | 0.0233 (8) | |
H5A | 0.1134 | 0.0498 | 0.8200 | 0.028* | |
H5B | 0.2842 | 0.1889 | 0.8263 | 0.028* | |
C4 | 0.2289 (5) | 0.4002 (4) | 0.9003 (4) | 0.0233 (8) | |
H4A | 0.3353 | 0.4283 | 0.9195 | 0.028* | |
H4B | 0.1970 | 0.4495 | 0.9682 | 0.028* | |
C1P | 0.3722 (4) | 0.3616 (4) | 0.4415 (4) | 0.0159 (7) | |
C2P | 0.3019 (4) | 0.3508 (4) | 0.3160 (4) | 0.0180 (7) | |
H2P | 0.2437 | 0.3992 | 0.3029 | 0.022* | |
C3P | 0.3188 (4) | 0.2680 (4) | 0.2109 (4) | 0.0185 (7) | |
H3P | 0.264 (5) | 0.251 (5) | 0.123 (5) | 0.023 (11)* | |
C4P | 0.4098 (4) | 0.1999 (4) | 0.2318 (4) | 0.0172 (7) | |
C5P | 0.4841 (4) | 0.2142 (4) | 0.3525 (4) | 0.0210 (8) | |
H5P | 0.5472 | 0.1707 | 0.3633 | 0.025* | |
C6P | 0.4641 (4) | 0.2949 (4) | 0.4593 (4) | 0.0207 (8) | |
H6P | 0.5125 | 0.3038 | 0.5425 | 0.025* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.0271 (2) | 0.0240 (2) | 0.02284 (19) | 0.01485 (18) | 0.00566 (16) | −0.00278 (16) |
N1 | 0.0232 (16) | 0.0136 (15) | 0.0186 (16) | 0.0090 (13) | −0.0002 (13) | −0.0014 (11) |
O1 | 0.0305 (14) | 0.0128 (13) | 0.0226 (14) | 0.0086 (11) | −0.0015 (11) | 0.0001 (10) |
C1 | 0.0193 (17) | 0.0191 (18) | 0.0144 (17) | 0.0108 (15) | −0.0054 (14) | −0.0021 (14) |
C3 | 0.0192 (19) | 0.0145 (19) | 0.024 (2) | 0.0067 (16) | −0.0013 (15) | −0.0038 (15) |
C2 | 0.024 (2) | 0.0190 (18) | 0.021 (2) | 0.0116 (16) | 0.0002 (14) | −0.0043 (15) |
O2 | 0.0246 (14) | 0.0191 (12) | 0.0224 (15) | 0.0077 (11) | 0.0034 (11) | 0.0007 (11) |
C5 | 0.028 (2) | 0.0167 (18) | 0.024 (2) | 0.0102 (17) | 0.0019 (16) | 0.0007 (16) |
C4 | 0.022 (2) | 0.0205 (18) | 0.0227 (19) | 0.0075 (15) | −0.0004 (15) | −0.0037 (16) |
C1P | 0.0160 (17) | 0.0110 (16) | 0.0173 (18) | 0.0041 (13) | 0.0015 (14) | 0.0016 (13) |
C2P | 0.0187 (17) | 0.0208 (18) | 0.0190 (19) | 0.0133 (15) | 0.0007 (14) | 0.0039 (14) |
C3P | 0.0199 (18) | 0.0214 (18) | 0.0155 (18) | 0.0112 (15) | −0.0003 (14) | 0.0019 (14) |
C4P | 0.0180 (17) | 0.0125 (16) | 0.0186 (18) | 0.0058 (13) | 0.0070 (14) | 0.0016 (14) |
C5P | 0.0145 (17) | 0.0181 (18) | 0.033 (2) | 0.0098 (15) | −0.0018 (15) | −0.0009 (15) |
C6P | 0.0206 (19) | 0.0197 (17) | 0.022 (2) | 0.0104 (16) | −0.0080 (15) | −0.0032 (15) |
Geometric parameters (Å, º) top
Br1—C4P | 1.902 (4) | C5—H5A | 0.9700 |
N1—C1 | 1.344 (5) | C5—H5B | 0.9700 |
N1—C2 | 1.467 (5) | C4—H4A | 0.9700 |
N1—C3 | 1.468 (5) | C4—H4B | 0.9700 |
O1—C1 | 1.231 (5) | C1P—C6P | 1.386 (5) |
C1—C1P | 1.506 (5) | C1P—C2P | 1.395 (5) |
C3—C5 | 1.505 (5) | C2P—C3P | 1.383 (5) |
C3—H3A | 0.92 (4) | C2P—H2P | 0.9300 |
C3—H3B | 0.9750 | C3P—C4P | 1.393 (5) |
C2—C4 | 1.513 (6) | C3P—H3P | 0.99 (5) |
C2—H2B | 0.96 (4) | C4P—C5P | 1.367 (5) |
C2—H2A | 1.0517 | C5P—C6P | 1.395 (6) |
O2—C5 | 1.428 (5) | C5P—H5P | 0.9300 |
O2—C4 | 1.432 (4) | C6P—H6P | 0.9300 |
| | | |
C1—N1—C2 | 120.5 (3) | O2—C4—C2 | 111.9 (3) |
C1—N1—C3 | 125.9 (3) | O2—C4—H4A | 109.2 |
C2—N1—C3 | 113.2 (3) | C2—C4—H4A | 109.2 |
O1—C1—N1 | 122.7 (3) | O2—C4—H4B | 109.2 |
O1—C1—C1P | 119.3 (3) | C2—C4—H4B | 109.2 |
N1—C1—C1P | 117.9 (3) | H4A—C4—H4B | 107.9 |
N1—C3—C5 | 109.0 (3) | C6P—C1P—C2P | 120.0 (3) |
N1—C3—H3A | 108 (2) | C6P—C1P—C1 | 122.3 (3) |
C5—C3—H3A | 111 (2) | C2P—C1P—C1 | 117.7 (3) |
N1—C3—H3B | 106.7 | C3P—C2P—C1P | 120.1 (3) |
C5—C3—H3B | 109.9 | C3P—C2P—H2P | 120.0 |
H3A—C3—H3B | 112.2 | C1P—C2P—H2P | 120.0 |
N1—C2—C4 | 110.2 (3) | C2P—C3P—C4P | 118.9 (3) |
N1—C2—H2B | 112 (2) | C2P—C3P—H3P | 122 (3) |
C4—C2—H2B | 112 (2) | C4P—C3P—H3P | 119 (3) |
N1—C2—H2A | 110.0 | C5P—C4P—C3P | 121.8 (4) |
C4—C2—H2A | 110.2 | C5P—C4P—Br1 | 119.9 (3) |
H2B—C2—H2A | 102.3 | C3P—C4P—Br1 | 118.2 (3) |
C5—O2—C4 | 109.9 (3) | C4P—C5P—C6P | 119.1 (3) |
O2—C5—C3 | 111.8 (3) | C4P—C5P—H5P | 120.4 |
O2—C5—H5A | 109.2 | C6P—C5P—H5P | 120.4 |
C3—C5—H5A | 109.2 | C1P—C6P—C5P | 120.0 (4) |
O2—C5—H5B | 109.2 | C1P—C6P—H6P | 120.0 |
C3—C5—H5B | 109.2 | C5P—C6P—H6P | 120.0 |
H5A—C5—H5B | 107.9 | | |
| | | |
C2—N1—C1—O1 | 3.1 (5) | N1—C1—C1P—C6P | −76.6 (4) |
C3—N1—C1—O1 | 175.1 (3) | O1—C1—C1P—C2P | −72.1 (4) |
C2—N1—C1—C1P | −175.5 (3) | N1—C1—C1P—C2P | 106.6 (4) |
C3—N1—C1—C1P | −3.5 (5) | C6P—C1P—C2P—C3P | 2.6 (5) |
C1—N1—C3—C5 | 134.4 (4) | C1—C1P—C2P—C3P | 179.5 (3) |
C2—N1—C3—C5 | −53.1 (4) | C1P—C2P—C3P—C4P | −1.7 (5) |
C1—N1—C2—C4 | −135.3 (3) | C2P—C3P—C4P—C5P | −0.7 (5) |
C3—N1—C2—C4 | 51.7 (4) | C2P—C3P—C4P—Br1 | 176.3 (3) |
C4—O2—C5—C3 | −60.8 (4) | C3P—C4P—C5P—C6P | 2.2 (6) |
N1—C3—C5—O2 | 57.4 (4) | Br1—C4P—C5P—C6P | −174.9 (3) |
C5—O2—C4—C2 | 58.7 (4) | C2P—C1P—C6P—C5P | −1.2 (6) |
N1—C2—C4—O2 | −53.9 (4) | C1—C1P—C6P—C5P | −177.9 (3) |
O1—C1—C1P—C6P | 104.7 (4) | C4P—C5P—C6P—C1P | −1.2 (6) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···O2i | 0.92 (4) | 2.63 (3) | 3.257 (4) | 126 (3) |
C2—H2B···O1ii | 0.96 (4) | 2.48 (4) | 3.322 (5) | 146 (3) |
C3P—H3P···O2iii | 0.99 (5) | 2.43 (5) | 3.417 (5) | 174 (4) |
Symmetry codes: (i) −x+y, −x, z−1/3; (ii) −y+1, x−y+1, z+1/3; (iii) x, y, z−1. |
4-[(4-Chlorophenyl)carbonyl]morpholine (BD138_1_a)
top
Crystal data top
C11H12ClNO2 | Dx = 1.359 Mg m−3 |
Mr = 225.67 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, P31 | Cell parameters from 5673 reflections |
a = 9.9808 (3) Å | θ = 3.2–26.0° |
c = 9.5853 (3) Å | µ = 0.33 mm−1 |
V = 826.93 (6) Å3 | T = 100 K |
Z = 3 | Plate, colourless |
F(000) = 354 | 0.5 × 0.45 × 0.4 mm |
Data collection top
Oxford Diffraction Xcalibur diffractometer | 1590 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.017 |
Detector resolution: 1024 x 1024 with blocks 2 x 2 pixels mm-1 | θmax = 26.0°, θmin = 3.2° |
ω–scan | h = −12→12 |
5673 measured reflections | k = −12→11 |
1680 independent reflections | l = −11→8 |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.028 | w = 1/[σ2(Fo2) + (0.0396P)2 + 0.0699P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.068 | (Δ/σ)max < 0.001 |
S = 1.09 | Δρmax = 0.27 e Å−3 |
1680 reflections | Δρmin = −0.45 e Å−3 |
185 parameters | Absolute structure: Flack x determined using 505 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
1 restraint | Absolute structure parameter: 0.00 (2) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
C1 | 0.3163 (3) | 0.2866 (3) | 0.4498 (3) | 0.0226 (5) | |
C2 | 0.1564 (3) | 0.1932 (3) | 0.4573 (3) | 0.0256 (5) | |
H2 | 0.1106 | 0.1392 | 0.5389 | 0.031* | |
C3 | 0.0650 (3) | 0.1804 (3) | 0.3433 (3) | 0.0290 (6) | |
H3 | −0.0418 | 0.1167 | 0.3472 | 0.035* | |
C4 | 0.1349 (3) | 0.2634 (3) | 0.2245 (3) | 0.0293 (6) | |
C5 | 0.2943 (3) | 0.3562 (3) | 0.2143 (3) | 0.0300 (6) | |
H5 | 0.335 (4) | 0.407 (4) | 0.137 (4) | 0.035 (8)* | |
C6 | 0.3843 (3) | 0.3654 (3) | 0.3272 (3) | 0.0267 (5) | |
H6 | 0.4915 | 0.4249 | 0.3211 | 0.032* | |
C7 | 0.4210 (3) | 0.2962 (3) | 0.5668 (3) | 0.0263 (6) | |
O8 | 0.5048 (2) | 0.2403 (2) | 0.55140 (19) | 0.0288 (4) | |
O12 | 0.4569 (2) | 0.5489 (2) | 0.9185 (2) | 0.0339 (5) | |
Cl15 | 0.02234 (9) | 0.25628 (8) | 0.08276 (8) | 0.0463 (2) | |
N9B | 0.4023 (5) | 0.3476 (5) | 0.6961 (4) | 0.0228 (8) | 0.65 |
C10A | 0.4949 (5) | 0.3523 (5) | 0.8162 (4) | 0.0252 (8) | 0.65 |
H10A | 0.5720 | 0.3263 | 0.7866 | 0.030* | 0.65 |
H10B | 0.4287 | 0.2763 | 0.8846 | 0.030* | 0.65 |
C11A | 0.5737 (6) | 0.5102 (6) | 0.8814 (5) | 0.0267 (9) | 0.65 |
H11A | 0.6301 | 0.5107 | 0.9640 | 0.032* | 0.65 |
H11B | 0.6465 | 0.5857 | 0.8161 | 0.032* | 0.65 |
C13A | 0.3819 (7) | 0.5609 (7) | 0.7974 (6) | 0.0294 (11) | 0.65 |
H13A | 0.4577 | 0.6354 | 0.7333 | 0.035* | 0.65 |
H13B | 0.3104 | 0.5960 | 0.8227 | 0.035* | 0.65 |
C14A | 0.2949 (4) | 0.4031 (4) | 0.7284 (4) | 0.0228 (7) | 0.65 |
H14A | 0.2144 | 0.3306 | 0.7904 | 0.027* | 0.65 |
H14B | 0.2463 | 0.4103 | 0.6432 | 0.027* | 0.65 |
N9A | 0.4587 (9) | 0.4097 (9) | 0.6589 (8) | 0.0210 (15) | 0.35 |
C10B | 0.5752 (9) | 0.4401 (10) | 0.7686 (8) | 0.0259 (15) | 0.35 |
H10C | 0.6647 | 0.5420 | 0.7552 | 0.031* | 0.35 |
H10D | 0.6088 | 0.3644 | 0.7623 | 0.031* | 0.35 |
C11B | 0.5065 (10) | 0.4310 (11) | 0.9087 (9) | 0.0248 (16) | 0.35 |
H11C | 0.5822 | 0.4496 | 0.9807 | 0.030* | 0.35 |
H11D | 0.4181 | 0.3285 | 0.9229 | 0.030* | 0.35 |
C13B | 0.3236 (12) | 0.4895 (13) | 0.8160 (11) | 0.029 (2) | 0.35 |
H13C | 0.2496 | 0.3819 | 0.8356 | 0.035* | 0.35 |
H13D | 0.2713 | 0.5489 | 0.8246 | 0.035* | 0.35 |
C14B | 0.3855 (9) | 0.5048 (8) | 0.6735 (9) | 0.0257 (16) | 0.35 |
H14C | 0.3023 | 0.4718 | 0.6062 | 0.031* | 0.35 |
H14D | 0.4608 | 0.6122 | 0.6549 | 0.031* | 0.35 |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0256 (12) | 0.0226 (11) | 0.0227 (13) | 0.0144 (10) | −0.0026 (10) | −0.0042 (10) |
C2 | 0.0264 (12) | 0.0252 (12) | 0.0246 (13) | 0.0124 (10) | 0.0016 (10) | 0.0031 (10) |
C3 | 0.0246 (12) | 0.0220 (12) | 0.0389 (15) | 0.0104 (10) | −0.0063 (11) | −0.0034 (11) |
C4 | 0.0388 (14) | 0.0262 (13) | 0.0290 (14) | 0.0209 (11) | −0.0151 (12) | −0.0094 (11) |
C5 | 0.0406 (15) | 0.0267 (13) | 0.0256 (15) | 0.0190 (12) | 0.0014 (12) | 0.0012 (11) |
C6 | 0.0251 (12) | 0.0256 (12) | 0.0285 (14) | 0.0120 (10) | 0.0006 (11) | −0.0034 (10) |
C7 | 0.0267 (13) | 0.0251 (12) | 0.0285 (14) | 0.0141 (11) | −0.0063 (10) | −0.0041 (11) |
O8 | 0.0304 (9) | 0.0374 (10) | 0.0270 (11) | 0.0232 (8) | 0.0010 (8) | 0.0016 (8) |
O12 | 0.0464 (11) | 0.0405 (11) | 0.0245 (10) | 0.0290 (9) | −0.0079 (8) | −0.0068 (8) |
Cl15 | 0.0606 (5) | 0.0449 (4) | 0.0396 (4) | 0.0311 (4) | −0.0285 (4) | −0.0107 (4) |
N9B | 0.026 (2) | 0.025 (2) | 0.021 (2) | 0.0159 (17) | −0.0027 (16) | 0.0002 (16) |
C10A | 0.031 (2) | 0.024 (2) | 0.023 (2) | 0.0159 (18) | −0.0050 (18) | 0.0013 (18) |
C11A | 0.024 (2) | 0.024 (2) | 0.027 (2) | 0.0087 (19) | −0.0026 (18) | 0.002 (2) |
C13A | 0.040 (3) | 0.024 (3) | 0.029 (3) | 0.019 (2) | −0.008 (2) | −0.005 (2) |
C14A | 0.0247 (18) | 0.025 (2) | 0.0214 (19) | 0.0146 (17) | −0.0008 (16) | −0.0038 (17) |
N9A | 0.025 (4) | 0.026 (4) | 0.016 (4) | 0.016 (3) | −0.002 (3) | 0.001 (3) |
C10B | 0.026 (4) | 0.031 (4) | 0.022 (4) | 0.016 (3) | −0.009 (3) | −0.003 (3) |
C11B | 0.027 (4) | 0.020 (4) | 0.024 (4) | 0.010 (4) | −0.005 (3) | 0.001 (4) |
C13B | 0.030 (5) | 0.025 (5) | 0.033 (5) | 0.014 (4) | −0.006 (4) | −0.002 (5) |
C14B | 0.030 (4) | 0.018 (3) | 0.033 (4) | 0.015 (3) | −0.007 (3) | −0.003 (3) |
Geometric parameters (Å, º) top
C1—C6 | 1.388 (4) | C10A—H10A | 0.9700 |
C1—C2 | 1.391 (3) | C10A—H10B | 0.9700 |
C1—C7 | 1.503 (3) | C11A—H11A | 0.9700 |
C2—C3 | 1.388 (4) | C11A—H11B | 0.9700 |
C2—H2 | 0.9300 | C13A—C14A | 1.518 (6) |
C3—C4 | 1.375 (4) | C13A—H13A | 0.9700 |
C3—H3 | 0.9300 | C13A—H13B | 0.9700 |
C4—C5 | 1.387 (4) | C14A—H14A | 0.9700 |
C4—Cl15 | 1.741 (3) | C14A—H14B | 0.9700 |
C5—C6 | 1.380 (4) | N9A—C14B | 1.465 (10) |
C5—H5 | 0.88 (3) | N9A—C10B | 1.482 (10) |
C6—H6 | 0.9300 | C10B—C11B | 1.490 (12) |
C7—O8 | 1.224 (3) | C10B—H10C | 0.9700 |
C7—N9A | 1.334 (8) | C10B—H10D | 0.9700 |
C7—N9B | 1.389 (5) | C11B—H11C | 0.9700 |
O12—C13A | 1.418 (6) | C11B—H11D | 0.9700 |
O12—C11A | 1.444 (5) | C13B—C14B | 1.475 (14) |
O12—C11B | 1.490 (8) | C13B—H13C | 0.9700 |
O12—C13B | 1.516 (10) | C13B—H13D | 0.9700 |
N9B—C10A | 1.463 (5) | C14B—H14C | 0.9700 |
N9B—C14A | 1.465 (6) | C14B—H14D | 0.9700 |
C10A—C11A | 1.501 (6) | | |
| | | |
C6—C1—C2 | 119.8 (2) | O12—C13A—C14A | 108.7 (4) |
C6—C1—C7 | 117.9 (2) | O12—C13A—H13A | 109.9 |
C2—C1—C7 | 122.2 (2) | C14A—C13A—H13A | 109.9 |
C3—C2—C1 | 120.1 (3) | O12—C13A—H13B | 109.9 |
C3—C2—H2 | 119.9 | C14A—C13A—H13B | 109.9 |
C1—C2—H2 | 119.9 | H13A—C13A—H13B | 108.3 |
C4—C3—C2 | 119.0 (2) | N9B—C14A—C13A | 109.7 (4) |
C4—C3—H3 | 120.5 | N9B—C14A—H14A | 109.7 |
C2—C3—H3 | 120.5 | C13A—C14A—H14A | 109.7 |
C3—C4—C5 | 121.8 (3) | N9B—C14A—H14B | 109.7 |
C3—C4—Cl15 | 119.9 (2) | C13A—C14A—H14B | 109.7 |
C5—C4—Cl15 | 118.3 (2) | H14A—C14A—H14B | 108.2 |
C6—C5—C4 | 118.7 (3) | C7—N9A—C14B | 126.4 (6) |
C6—C5—H5 | 122 (2) | C7—N9A—C10B | 120.2 (6) |
C4—C5—H5 | 119 (2) | C14B—N9A—C10B | 113.2 (6) |
C5—C6—C1 | 120.5 (2) | N9A—C10B—C11B | 109.7 (6) |
C5—C6—H6 | 119.7 | N9A—C10B—H10C | 109.7 |
C1—C6—H6 | 119.7 | C11B—C10B—H10C | 109.7 |
O8—C7—N9A | 120.0 (4) | N9A—C10B—H10D | 109.7 |
O8—C7—N9B | 121.6 (3) | C11B—C10B—H10D | 109.7 |
O8—C7—C1 | 119.5 (2) | H10C—C10B—H10D | 108.2 |
N9A—C7—C1 | 116.1 (4) | C10B—C11B—O12 | 109.5 (6) |
N9B—C7—C1 | 118.1 (2) | C10B—C11B—H11C | 109.8 |
C13A—O12—C11A | 110.6 (3) | O12—C11B—H11C | 109.8 |
C11B—O12—C13B | 102.9 (5) | C10B—C11B—H11D | 109.8 |
C7—N9B—C10A | 121.0 (3) | O12—C11B—H11D | 109.8 |
C7—N9B—C14A | 126.0 (3) | H11C—C11B—H11D | 108.2 |
C10A—N9B—C14A | 113.0 (4) | C14B—C13B—O12 | 108.7 (7) |
N9B—C10A—C11A | 110.6 (3) | C14B—C13B—H13C | 110.0 |
N9B—C10A—H10A | 109.5 | O12—C13B—H13C | 110.0 |
C11A—C10A—H10A | 109.5 | C14B—C13B—H13D | 110.0 |
N9B—C10A—H10B | 109.5 | O12—C13B—H13D | 110.0 |
C11A—C10A—H10B | 109.5 | H13C—C13B—H13D | 108.3 |
H10A—C10A—H10B | 108.1 | N9A—C14B—C13B | 109.9 (7) |
O12—C11A—C10A | 108.3 (3) | N9A—C14B—H14C | 109.7 |
O12—C11A—H11A | 110.0 | C13B—C14B—H14C | 109.7 |
C10A—C11A—H11A | 110.0 | N9A—C14B—H14D | 109.7 |
O12—C11A—H11B | 110.0 | C13B—C14B—H14D | 109.7 |
C10A—C11A—H11B | 110.0 | H14C—C14B—H14D | 108.2 |
H11A—C11A—H11B | 108.4 | | |
| | | |
C6—C1—C2—C3 | −0.9 (4) | C7—N9B—C10A—C11A | 126.9 (4) |
C7—C1—C2—C3 | −175.9 (2) | C14A—N9B—C10A—C11A | −52.4 (5) |
C1—C2—C3—C4 | −1.1 (4) | C13A—O12—C11A—C10A | −64.4 (5) |
C2—C3—C4—C5 | 1.7 (4) | N9B—C10A—C11A—O12 | 56.5 (5) |
C2—C3—C4—Cl15 | −177.11 (19) | C11A—O12—C13A—C14A | 64.7 (5) |
C3—C4—C5—C6 | −0.3 (4) | C7—N9B—C14A—C13A | −127.2 (4) |
Cl15—C4—C5—C6 | 178.54 (19) | C10A—N9B—C14A—C13A | 52.0 (5) |
C4—C5—C6—C1 | −1.7 (4) | O12—C13A—C14A—N9B | −57.1 (5) |
C2—C1—C6—C5 | 2.3 (4) | O8—C7—N9A—C14B | 169.4 (6) |
C7—C1—C6—C5 | 177.5 (2) | C1—C7—N9A—C14B | 13.0 (10) |
C6—C1—C7—O8 | −64.8 (3) | O8—C7—N9A—C10B | −16.6 (9) |
C2—C1—C7—O8 | 110.2 (3) | C1—C7—N9A—C10B | −173.0 (6) |
C6—C1—C7—N9A | 91.7 (5) | C7—N9A—C10B—C11B | −123.5 (8) |
C2—C1—C7—N9A | −93.3 (5) | C14B—N9A—C10B—C11B | 51.1 (9) |
C6—C1—C7—N9B | 124.7 (3) | N9A—C10B—C11B—O12 | −60.1 (8) |
C2—C1—C7—N9B | −60.2 (3) | C13B—O12—C11B—C10B | 67.8 (8) |
O8—C7—N9B—C10A | 6.6 (5) | C11B—O12—C13B—C14B | −68.7 (8) |
C1—C7—N9B—C10A | 176.9 (3) | C7—N9A—C14B—C13B | 121.7 (9) |
O8—C7—N9B—C14A | −174.2 (3) | C10B—N9A—C14B—C13B | −52.6 (9) |
C1—C7—N9B—C14A | −3.9 (5) | O12—C13B—C14B—N9A | 62.0 (9) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O12i | 0.88 (3) | 2.48 (4) | 3.354 (4) | 178 (3) |
C10A—H10A···O8ii | 0.97 | 2.43 | 3.240 (4) | 140 |
C10A—H10B···Cl15iii | 0.97 | 2.92 | 3.382 (4) | 110 |
C14A—H14B···O12iv | 0.97 | 2.55 | 3.282 (4) | 133 |
C10B—H10D···O8ii | 0.97 | 2.48 | 3.306 (7) | 143 |
C11B—H11C···O8v | 0.97 | 2.65 | 3.601 (8) | 166 |
C14B—H14C···O12iv | 0.97 | 2.54 | 3.251 (7) | 130 |
Symmetry codes: (i) x, y, z−1; (ii) −y+1, x−y, z+1/3; (iii) −x+y, −x, z+2/3; (iv) −x+y, −x+1, z−1/3; (v) −x+y+1, −x+1, z+2/3. |
4-[(4-Fluorophenyl)carbonyl]morpholine (BD264_a)
top
Crystal data top
C11H12FNO2 | Dx = 1.377 Mg m−3 |
Mr = 209.22 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 12441 reflections |
a = 7.3584 (5) Å | θ = 3.0–26.0° |
b = 7.2979 (5) Å | µ = 0.11 mm−1 |
c = 37.576 (2) Å | T = 100 K |
V = 2017.9 (2) Å3 | Plate, colourless |
Z = 8 | 0.2 × 0.15 × 0.1 mm |
F(000) = 880 | |
Data collection top
Oxford Diffraction Xcalibur diffractometer | 1193 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.092 |
Graphite monochromator | θmax = 26.0°, θmin = 3.0° |
Detector resolution: 1024 x 1024 with blocks 2 x 2 pixels mm-1 | h = −9→9 |
ω–scan | k = −9→8 |
12441 measured reflections | l = −38→46 |
1977 independent reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.0327P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max < 0.001 |
1977 reflections | Δρmax = 0.19 e Å−3 |
152 parameters | Δρmin = −0.23 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.5048 (3) | 0.3731 (3) | 0.39818 (5) | 0.0150 (5) | |
C2 | 0.6167 (3) | 0.2327 (3) | 0.41019 (5) | 0.0212 (5) | |
H2 | 0.6961 | 0.1756 | 0.3944 | 0.025* | |
C3 | 0.6111 (3) | 0.1773 (3) | 0.44536 (5) | 0.0225 (5) | |
H3 | 0.6859 | 0.0835 | 0.4535 | 0.027* | |
C4 | 0.4926 (3) | 0.2638 (3) | 0.46790 (5) | 0.0207 (5) | |
C5 | 0.3829 (3) | 0.4048 (3) | 0.45731 (5) | 0.0222 (5) | |
H5 | 0.3045 | 0.4613 | 0.4733 | 0.027* | |
C6 | 0.3916 (3) | 0.4614 (3) | 0.42214 (5) | 0.0193 (5) | |
H6 | 0.3208 | 0.5595 | 0.4146 | 0.023* | |
O8 | 0.54816 (18) | 0.60234 (18) | 0.35425 (3) | 0.0189 (4) | |
C7 | 0.5118 (3) | 0.4402 (3) | 0.36044 (5) | 0.0147 (5) | |
N9 | 0.4773 (2) | 0.3185 (2) | 0.33405 (4) | 0.0142 (4) | |
C10 | 0.4901 (3) | 0.3736 (3) | 0.29649 (5) | 0.0161 (5) | |
H10A | 0.5498 | 0.4918 | 0.2947 | 0.019* | |
H10B | 0.3692 | 0.3849 | 0.2864 | 0.019* | |
C11 | 0.5973 (3) | 0.2316 (3) | 0.27605 (5) | 0.0189 (5) | |
H11A | 0.5949 (18) | 0.2614 (17) | 0.2498 (4) | 0.015 (5)* | |
H11B | 0.7269 | 0.2305 | 0.2847 | 0.018* | |
O12 | 0.52018 (19) | 0.05262 (17) | 0.27991 (3) | 0.0201 (4) | |
C13 | 0.5174 (3) | 0.0010 (3) | 0.31667 (5) | 0.0177 (5) | |
H13A | 0.647 (3) | −0.001 (2) | 0.3263 (5) | 0.022 (6)* | |
H13B | 0.464 (2) | −0.125 (3) | 0.3176 (5) | 0.020 (5)* | |
C14 | 0.4050 (3) | 0.1331 (3) | 0.33829 (5) | 0.0165 (5) | |
H14A | 0.2806 (17) | 0.1330 (17) | 0.3295 (3) | 0.010 (5)* | |
H14B | 0.4053 | 0.0938 | 0.3642 | 0.012* | |
F15 | 0.48309 (18) | 0.20748 (16) | 0.50252 (3) | 0.0315 (4) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0138 (11) | 0.0155 (11) | 0.0157 (11) | −0.0022 (10) | 0.0001 (9) | −0.0014 (8) |
C2 | 0.0235 (13) | 0.0223 (13) | 0.0179 (12) | 0.0050 (11) | 0.0021 (9) | −0.0023 (10) |
C3 | 0.0291 (14) | 0.0201 (12) | 0.0182 (12) | 0.0080 (11) | −0.0045 (10) | 0.0034 (10) |
C4 | 0.0300 (14) | 0.0215 (11) | 0.0107 (11) | −0.0033 (12) | 0.0001 (10) | 0.0010 (9) |
C5 | 0.0248 (13) | 0.0242 (13) | 0.0176 (12) | 0.0017 (11) | 0.0038 (10) | −0.0038 (10) |
C6 | 0.0209 (12) | 0.0191 (12) | 0.0179 (12) | 0.0031 (10) | −0.0027 (9) | −0.0010 (10) |
O8 | 0.0240 (8) | 0.0132 (8) | 0.0196 (8) | −0.0015 (7) | −0.0025 (6) | −0.0003 (6) |
C7 | 0.0093 (11) | 0.0174 (11) | 0.0175 (11) | 0.0019 (9) | 0.0001 (9) | −0.0004 (9) |
N9 | 0.0174 (10) | 0.0139 (9) | 0.0115 (9) | −0.0028 (8) | 0.0005 (8) | 0.0016 (7) |
C10 | 0.0197 (12) | 0.0170 (11) | 0.0116 (11) | −0.0016 (11) | −0.0026 (9) | 0.0019 (8) |
C11 | 0.0248 (13) | 0.0156 (12) | 0.0164 (12) | −0.0024 (10) | 0.0018 (10) | 0.0003 (9) |
O12 | 0.0301 (9) | 0.0148 (7) | 0.0154 (7) | −0.0025 (7) | 0.0010 (7) | −0.0009 (6) |
C13 | 0.0210 (14) | 0.0155 (12) | 0.0167 (11) | −0.0022 (11) | −0.0009 (11) | 0.0028 (9) |
C14 | 0.0193 (12) | 0.0155 (11) | 0.0148 (11) | −0.0035 (10) | −0.0001 (10) | 0.0012 (10) |
F15 | 0.0487 (9) | 0.0319 (8) | 0.0137 (6) | 0.0032 (7) | 0.0018 (6) | 0.0047 (5) |
Geometric parameters (Å, º) top
C1—C6 | 1.385 (3) | N9—C14 | 1.463 (2) |
C1—C2 | 1.390 (3) | N9—C10 | 1.470 (2) |
C1—C7 | 1.501 (3) | C10—C11 | 1.512 (3) |
C2—C3 | 1.382 (3) | C10—H10A | 0.9700 |
C2—H2 | 0.9300 | C10—H10B | 0.9700 |
C3—C4 | 1.370 (3) | C11—O12 | 1.431 (2) |
C3—H3 | 0.9300 | C11—H11A | 1.010 (14) |
C4—F15 | 1.366 (2) | C11—H11B | 1.0073 |
C4—C5 | 1.366 (3) | O12—C13 | 1.432 (2) |
C5—C6 | 1.386 (3) | C13—C14 | 1.508 (3) |
C5—H5 | 0.9300 | C13—H13A | 1.02 (2) |
C6—H6 | 0.9300 | C13—H13B | 1.001 (19) |
O8—C7 | 1.235 (2) | C14—H14A | 0.974 (13) |
C7—N9 | 1.355 (2) | C14—H14B | 1.0138 |
| | | |
C6—C1—C2 | 119.23 (18) | N9—C10—H10A | 109.8 |
C6—C1—C7 | 118.86 (18) | C11—C10—H10A | 109.8 |
C2—C1—C7 | 121.79 (18) | N9—C10—H10B | 109.8 |
C3—C2—C1 | 120.5 (2) | C11—C10—H10B | 109.8 |
C3—C2—H2 | 119.7 | H10A—C10—H10B | 108.2 |
C1—C2—H2 | 119.7 | O12—C11—C10 | 111.53 (16) |
C4—C3—C2 | 118.4 (2) | O12—C11—H11A | 106.8 (8) |
C4—C3—H3 | 120.8 | C10—C11—H11A | 109.8 (8) |
C2—C3—H3 | 120.8 | O12—C11—H11B | 109.6 |
F15—C4—C5 | 118.27 (19) | C10—C11—H11B | 109.6 |
F15—C4—C3 | 118.85 (19) | H11A—C11—H11B | 109.4 |
C5—C4—C3 | 122.88 (19) | C11—O12—C13 | 110.11 (15) |
C4—C5—C6 | 118.3 (2) | O12—C13—C14 | 111.05 (17) |
C4—C5—H5 | 120.8 | O12—C13—H13A | 109.4 (11) |
C6—C5—H5 | 120.8 | C14—C13—H13A | 109.5 (11) |
C1—C6—C5 | 120.6 (2) | O12—C13—H13B | 106.2 (10) |
C1—C6—H6 | 119.7 | C14—C13—H13B | 110.7 (11) |
C5—C6—H6 | 119.7 | H13A—C13—H13B | 109.9 (15) |
O8—C7—N9 | 122.02 (17) | N9—C14—C13 | 109.46 (16) |
O8—C7—C1 | 119.86 (18) | N9—C14—H14A | 107.8 (8) |
N9—C7—C1 | 118.12 (17) | C13—C14—H14A | 109.4 (7) |
C7—N9—C14 | 126.47 (16) | N9—C14—H14B | 111.4 |
C7—N9—C10 | 120.76 (16) | C13—C14—H14B | 109.5 |
C14—N9—C10 | 112.38 (15) | H14A—C14—H14B | 109.2 |
N9—C10—C11 | 109.49 (16) | | |
| | | |
C6—C1—C2—C3 | 2.2 (3) | C2—C1—C7—N9 | 59.3 (3) |
C7—C1—C2—C3 | 178.1 (2) | O8—C7—N9—C14 | −169.47 (18) |
C1—C2—C3—C4 | 0.1 (3) | C1—C7—N9—C14 | 10.5 (3) |
C2—C3—C4—F15 | 178.61 (19) | O8—C7—N9—C10 | 2.8 (3) |
C2—C3—C4—C5 | −1.5 (3) | C1—C7—N9—C10 | −177.22 (17) |
F15—C4—C5—C6 | −179.61 (19) | C7—N9—C10—C11 | 133.04 (19) |
C3—C4—C5—C6 | 0.4 (3) | C14—N9—C10—C11 | −53.7 (2) |
C2—C1—C6—C5 | −3.2 (3) | N9—C10—C11—O12 | 55.7 (2) |
C7—C1—C6—C5 | −179.26 (19) | C10—C11—O12—C13 | −59.5 (2) |
C4—C5—C6—C1 | 1.9 (3) | C11—O12—C13—C14 | 60.3 (2) |
C6—C1—C7—O8 | 55.2 (3) | C7—N9—C14—C13 | −132.5 (2) |
C2—C1—C7—O8 | −120.7 (2) | C10—N9—C14—C13 | 54.7 (2) |
C6—C1—C7—N9 | −124.8 (2) | O12—C13—C14—N9 | −57.5 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11A···O12i | 1.010 (14) | 2.546 (13) | 3.265 (2) | 127.9 (9) |
C13—H13A···O8ii | 1.02 (2) | 2.59 (2) | 3.572 (3) | 161.5 (14) |
C13—H13B···O8iii | 1.001 (19) | 2.499 (18) | 3.242 (2) | 130.7 (14) |
C14—H14A···O8iv | 0.974 (13) | 2.601 (12) | 3.395 (2) | 138.8 (10) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+3/2, y−1/2, z; (iii) x, y−1, z; (iv) −x+1/2, y−1/2, z. |
Summary of hydrogen-bond geometry (Å, °) for 1a–1d topD—H···A | D—H (Å) | H···A (Å) | D···A (Å) | D—H···A (°) |
1a | | | | |
C14—H14A···O8i | 0.97 (2) | 2.52 (2) | 3.480 (3) | 171.7 (18) |
C14—H14B···O8ii | 0.96 (2) | 2.41 (2) | 3.069 (2) | 125.6 (18) |
| | | | |
1b | | | | |
C3—H3A···O2iii | 0.92 (4) | 2.63 (4) | 3.257 (4) | 126 (3) |
C2—H2B···O1iv | 0.96 (4) | 2.48 (4) | 3.322 (5) | 146 (3) |
C3P—H3P···O2v | 0.99 (5) | 2.43 (5) | 3.417 (5) | 174 (4) |
| | | | |
1c | | | | |
C5—H5···O12v | 0.88 (3) | 2.48 (4) | 3.353 (4) | 178 (3) |
C10A—H10A···O8vi | 0.97 | 2.43 | 3.240 (4) | 140.3 |
C10A—H10B···Cl15vii | 0.97 | 2.92 | 3.382 (4) | 110.1 |
C14A—H14B···O12viii | 0.97 | 2.55 | 3.281 (4) | 132.6 |
C10B—H10D···O8vi | 0.97 | 2.48 | 3.307 (7) | 143.2 |
C11B—H11C···O8ix | 0.97 | 2.65 | 3.601 (8) | 166.1 |
C14B—H14C···O12viii | 0.97 | 2.54 | 3.250 (7) | 130.2 |
| | | | |
1d | | | | |
C11—H11A···O12x | 1.010 (14) | 2.546 (13) | 3.265 (2) | 127.9 (9) |
C13—H13A···O8xi | 1.02 (2) | 2.59 (2) | 3.572 (2) | 161.5 (14) |
C13—H13B···O8xii | 1.001 (19) | 2.499 (18) | 3.242 (2) | 130.7 (14) |
C14—H14A···O8xiii | 0.974 (13) | 2.601 (12) | 3.395 (2) | 138.8 (10) |
Symmetry codes: (i) -x+1, -y+1, -z;
(ii) -x+1, y-1/2, -z+1/2;
(iii) -x+y, -x, z-1/3;
(iv) -y+1, x-y+1, z+1/3;
(v) x, y, z-1;
(vi) -y+1, x-y, z+1/3;
(vii) -x+y, -x, z+2/3;
(viii) -x+y, -x+1, z-1/3;
(ix) -x+y+1, -x+1, z+2/3;
(x) -x+1, y+1/2, -z+1/2;
(xi) -x+3/2, y-1/2, z;
(xii) x, y-1, z;
(xiii) -x+1/2, y-1/2, z. |
Selected crystallographic structural parameters (Å, °) of 4-halobenzamides
1a–1d topEntry | Amide | N—C(O) | C═O | NC(O) τ | NC(O) χN | CC(O) τ |
1 | 1a (R = I) | 1.357 | 1.234 | 12.90 | 19.99 | 43.77 |
2 | 1b (R = Br) | 1.345 | 1.230 | 0.18 | 8.28 | 74.30 |
3 | 1c (R = Cl) | 1.389 | 1.224 | 1.35 | 0.89 | 62.54 |
4 | 1d (R = F) | 1.354 | 1.236 | 6.69 | 7.81 | 57.28 |
5 | Benzamide | 1.342 | 1.265 | 0.02 | 0.07 | 25.66 |
6 | Formamide | 1.349 | 1.193 | 0.0 | 0.0 | 0.0 |
Entries 1–4 are from this study and are X-ray structures, entry 5 is from
Johansson & van de Streek (2016) and is an X-ray structure, and entry 6
is from
Greenberg & Venanzi (1993) and are calculated values. |
Resonance energies of amides 1a–1e calculated using the COSNAR methoda topEntry | 1 | ER (kcal mol-1) |
1 | 1a (R = I) | 15.3 |
2 | 1b (R = Br) | 15.2 |
3 | 1c (R = Cl) | 15.2 |
4 | 1d (R = F) | 15.0 |
5 | 1e (R = H) | 15.3 |
Note: (a) representative data on twisted amides: Szostak et al.
(2016); representative data on bridged lactams: Greenberg et al.
(1996) and Szostak et al. (2015). |
Resonance energies of amides 2a–2e calculated using the COSNAR methoda topEntry | 2 | ER (kcal mol-1) |
1 | 2a (R = I) | 15.5 |
2 | 2b (R = Br) | 15.4 |
3 | 2c (R = Cl) | 15.5 |
4 | 2d (R = F) | 15.1 |
5 | 2e (R = H) | 15.5 |
Note: (a) representative data on twisted amides: Szostak et al.
(2016); representative data on bridged lactams: Greenberg et al.
(1996) and Szostak et al. (2015). |
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