Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270100005588/qa0279sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270100005588/qa0279Isup2.hkl |
The ligand and its chlorocopper(II) complex were prepared as described previously (Okuno et al., 1997). Crystals of the title compound were grown from a methanol solution.
Positional parameters of all the H atoms were calculated geometrically and fixed with U(H) = 1.2Ueq(parent atom). The maximum residual density was located 0.99 Å from the Cu1 atom.
Data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1993); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation, 1999); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: TEXSAN; software used to prepare material for publication: TEXSAN.
[CuCl(C16H22N4)]ClO4 | Dx = 1.610 Mg m−3 |
Mr = 468.83 | Mo Kα radiation, λ = 0.71073 Å |
Monoclinic, P21/c | Cell parameters from 25 reflections |
a = 11.044 (2) Å | θ = 10–15° |
b = 11.085 (1) Å | µ = 1.44 mm−1 |
c = 15.858 (1) Å | T = 299 K |
β = 95.100 (9)° | Prism, blue |
V = 1933.8 (4) Å3 | 0.6 × 0.5 × 0.2 mm |
Z = 4 |
Rigaku AFC-5S diffractometer | Rint = 0.028 |
θ–2θ scans | θmax = 27.5° |
Absorption correction: integration (Coppens et al., 1965) | h = 0→14 |
Tmin = 0.365, Tmax = 0.764 | k = 0→14 |
4916 measured reflections | l = −21→21 |
4445 independent reflections | 3 standard reflections every 100 reflections |
3426 reflections with I > 2σ(I) | intensity decay: none |
Refinement on F2 | H-atom parameters not refined |
R[F2 > 2σ(F2)] = 0.049 | w = 1/[σ2(Fo2) + (0.05(Fo2 + 2Fc2)/3)2] |
wR(F2) = 0.122 | (Δ/σ)max = 0.001 |
S = 1.51 | Δρmax = 0.98 e Å−3 |
4445 reflections | Δρmin = −0.68 e Å−3 |
244 parameters |
[CuCl(C16H22N4)]ClO4 | V = 1933.8 (4) Å3 |
Mr = 468.83 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.044 (2) Å | µ = 1.44 mm−1 |
b = 11.085 (1) Å | T = 299 K |
c = 15.858 (1) Å | 0.6 × 0.5 × 0.2 mm |
β = 95.100 (9)° |
Rigaku AFC-5S diffractometer | 3426 reflections with I > 2σ(I) |
Absorption correction: integration (Coppens et al., 1965) | Rint = 0.028 |
Tmin = 0.365, Tmax = 0.764 | 3 standard reflections every 100 reflections |
4916 measured reflections | intensity decay: none |
4445 independent reflections |
R[F2 > 2σ(F2)] = 0.049 | 244 parameters |
wR(F2) = 0.122 | H-atom parameters not refined |
S = 1.51 | Δρmax = 0.98 e Å−3 |
4445 reflections | Δρmin = −0.68 e Å−3 |
Refinement. Refinement using reflections with F2 > 0.0 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.71254 (3) | 0.16092 (3) | 0.27961 (2) | 0.02884 (10) | |
Cl1 | 0.55658 (8) | 0.22147 (8) | 0.17090 (5) | 0.0431 (2) | |
Cl2 | 1.12933 (9) | 0.14997 (8) | 0.39210 (5) | 0.0443 (2) | |
O1 | 1.1330 (8) | 0.0417 (4) | 0.4312 (3) | 0.193 (3) | |
O2 | 1.0079 (4) | 0.1912 (6) | 0.3864 (3) | 0.147 (2) | |
O3 | 1.2025 (4) | 0.2331 (4) | 0.4416 (2) | 0.089 (1) | |
O4 | 1.1616 (4) | 0.1408 (4) | 0.3088 (2) | 0.102 (2) | |
N1 | 0.7187 (3) | 0.3226 (2) | 0.3429 (2) | 0.0351 (7) | |
N2 | 0.6194 (3) | 0.1125 (3) | 0.3819 (2) | 0.0388 (7) | |
N3 | 0.7537 (3) | −0.0188 (2) | 0.2757 (2) | 0.0374 (7) | |
N4 | 0.8456 (2) | 0.1720 (2) | 0.1994 (2) | 0.0334 (7) | |
C1 | 0.7219 (3) | 0.4352 (3) | 0.3114 (2) | 0.0414 (9) | |
C2 | 0.7028 (4) | 0.5365 (3) | 0.3591 (3) | 0.050 (1) | |
C3 | 0.6812 (4) | 0.5217 (4) | 0.4423 (3) | 0.058 (1) | |
C4 | 0.6774 (4) | 0.4067 (4) | 0.4761 (2) | 0.052 (1) | |
C5 | 0.6960 (3) | 0.3091 (3) | 0.4243 (2) | 0.0391 (9) | |
C6 | 0.6870 (4) | 0.1798 (3) | 0.4518 (2) | 0.0451 (10) | |
C7 | 0.6300 (4) | −0.0196 (3) | 0.3956 (2) | 0.051 (1) | |
C8 | 0.7457 (4) | −0.0652 (3) | 0.3630 (2) | 0.051 (1) | |
C9 | 0.8790 (3) | −0.0306 (3) | 0.2500 (2) | 0.0429 (9) | |
C10 | 0.9022 (3) | 0.0669 (3) | 0.1882 (2) | 0.0369 (8) | |
C11 | 0.9808 (4) | 0.0515 (4) | 0.1257 (3) | 0.051 (1) | |
C12 | 1.0050 (4) | 0.1490 (4) | 0.0759 (2) | 0.053 (1) | |
C13 | 0.9502 (3) | 0.2579 (4) | 0.0889 (2) | 0.048 (1) | |
C14 | 0.8690 (3) | 0.2653 (3) | 0.1499 (2) | 0.0414 (9) | |
C15 | 0.4893 (4) | 0.1493 (4) | 0.3745 (3) | 0.059 (1) | |
C16 | 0.6678 (4) | −0.0813 (3) | 0.2130 (2) | 0.048 (1) | |
H1 | 0.7382 | 0.4455 | 0.2533 | 0.0497* | |
H2 | 0.7045 | 0.6156 | 0.3346 | 0.0600* | |
H3 | 0.6687 | 0.5908 | 0.4770 | 0.0699* | |
H4 | 0.6622 | 0.3949 | 0.5342 | 0.0629* | |
H5 | 0.6445 | 0.1751 | 0.5019 | 0.0542* | |
H6 | 0.7670 | 0.1463 | 0.4632 | 0.0542* | |
H7 | 0.6312 | −0.0367 | 0.4550 | 0.0611* | |
H8 | 0.5617 | −0.0593 | 0.3659 | 0.0611* | |
H9 | 0.7452 | −0.1518 | 0.3623 | 0.0611* | |
H10 | 0.8143 | −0.0372 | 0.3992 | 0.0611* | |
H11 | 0.9362 | −0.0237 | 0.2990 | 0.0515* | |
H12 | 0.8881 | −0.1079 | 0.2240 | 0.0515* | |
H13 | 1.0176 | −0.0255 | 0.1172 | 0.0608* | |
H14 | 1.0597 | 0.1409 | 0.0324 | 0.0632* | |
H15 | 0.9681 | 0.3275 | 0.0561 | 0.0570* | |
H16 | 0.8276 | 0.3403 | 0.1571 | 0.0497* | |
H17 | 0.4834 | 0.2344 | 0.3634 | 0.0703* | |
H18 | 0.4461 | 0.1059 | 0.3289 | 0.0703* | |
H19 | 0.4545 | 0.1316 | 0.4264 | 0.0703* | |
H20 | 0.5866 | −0.0740 | 0.2296 | 0.0580* | |
H21 | 0.6719 | −0.0454 | 0.1582 | 0.0580* | |
H22 | 0.6892 | −0.1651 | 0.2105 | 0.0580* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0317 (2) | 0.0244 (2) | 0.0310 (2) | −0.0015 (2) | 0.0062 (1) | 0.0025 (1) |
Cl1 | 0.0383 (4) | 0.0484 (5) | 0.0416 (4) | 0.0066 (4) | −0.0016 (3) | 0.0033 (3) |
Cl2 | 0.0537 (5) | 0.0364 (4) | 0.0434 (4) | −0.0061 (4) | 0.0082 (4) | −0.0042 (3) |
O1 | 0.38 (1) | 0.058 (3) | 0.124 (4) | −0.043 (4) | −0.067 (5) | 0.036 (3) |
O2 | 0.071 (3) | 0.254 (7) | 0.115 (4) | 0.041 (4) | −0.004 (2) | −0.076 (4) |
O3 | 0.089 (3) | 0.083 (3) | 0.097 (3) | −0.036 (2) | 0.022 (2) | −0.043 (2) |
O4 | 0.119 (4) | 0.124 (4) | 0.070 (2) | −0.023 (3) | 0.042 (2) | −0.033 (2) |
N1 | 0.038 (1) | 0.031 (1) | 0.036 (1) | −0.001 (1) | 0.004 (1) | 0.000 (1) |
N2 | 0.045 (2) | 0.039 (1) | 0.033 (1) | −0.003 (1) | 0.007 (1) | 0.006 (1) |
N3 | 0.039 (1) | 0.029 (1) | 0.044 (1) | −0.003 (1) | 0.004 (1) | 0.002 (1) |
N4 | 0.032 (1) | 0.032 (1) | 0.037 (1) | 0.000 (1) | 0.005 (1) | 0.003 (1) |
C1 | 0.042 (2) | 0.031 (2) | 0.053 (2) | −0.004 (1) | 0.010 (2) | −0.001 (1) |
C2 | 0.051 (2) | 0.030 (2) | 0.069 (2) | 0.001 (2) | 0.007 (2) | −0.002 (2) |
C3 | 0.068 (3) | 0.043 (2) | 0.064 (2) | 0.003 (2) | 0.008 (2) | −0.019 (2) |
C4 | 0.071 (3) | 0.047 (2) | 0.040 (2) | 0.004 (2) | 0.008 (2) | −0.008 (2) |
C5 | 0.044 (2) | 0.038 (2) | 0.035 (2) | 0.002 (1) | 0.001 (1) | −0.002 (1) |
C6 | 0.064 (2) | 0.040 (2) | 0.031 (2) | 0.004 (2) | 0.004 (2) | 0.003 (1) |
C7 | 0.073 (3) | 0.037 (2) | 0.044 (2) | −0.012 (2) | 0.014 (2) | 0.008 (1) |
C8 | 0.073 (3) | 0.030 (2) | 0.050 (2) | 0.003 (2) | 0.006 (2) | 0.012 (1) |
C9 | 0.040 (2) | 0.035 (2) | 0.054 (2) | 0.007 (1) | 0.001 (1) | 0.004 (1) |
C10 | 0.032 (2) | 0.036 (2) | 0.042 (2) | 0.000 (1) | 0.001 (1) | −0.001 (1) |
C11 | 0.039 (2) | 0.050 (2) | 0.065 (2) | 0.009 (2) | 0.012 (2) | −0.002 (2) |
C12 | 0.041 (2) | 0.066 (3) | 0.053 (2) | 0.001 (2) | 0.018 (2) | −0.002 (2) |
C13 | 0.041 (2) | 0.057 (2) | 0.046 (2) | −0.006 (2) | 0.010 (2) | 0.007 (2) |
C14 | 0.044 (2) | 0.038 (2) | 0.043 (2) | 0.000 (2) | 0.009 (1) | 0.006 (1) |
C15 | 0.042 (2) | 0.078 (3) | 0.058 (2) | 0.001 (2) | 0.017 (2) | 0.015 (2) |
C16 | 0.051 (2) | 0.037 (2) | 0.057 (2) | −0.009 (2) | 0.004 (2) | −0.007 (2) |
Cu1—Cl1 | 2.421 (1) | C4—H4 | 0.960 |
Cu1—N1 | 2.053 (3) | C5—C6 | 1.504 (5) |
Cu1—N2 | 2.068 (3) | C6—H5 | 0.960 |
Cu1—N3 | 2.046 (3) | C6—H6 | 0.960 |
Cu1—N4 | 2.031 (3) | C7—C8 | 1.507 (6) |
Cl2—O1 | 1.350 (4) | C7—H7 | 0.960 |
Cl2—O2 | 1.412 (5) | C7—H8 | 0.960 |
Cl2—O3 | 1.417 (3) | C8—H9 | 0.960 |
Cl2—O4 | 1.402 (3) | C8—H10 | 0.960 |
N1—C1 | 1.347 (4) | C9—C10 | 1.496 (5) |
N1—C5 | 1.345 (4) | C9—H11 | 0.960 |
N2—C6 | 1.481 (4) | C9—H12 | 0.960 |
N2—C7 | 1.484 (5) | C10—C11 | 1.385 (5) |
N2—C15 | 1.488 (5) | C11—C12 | 1.379 (6) |
N3—C8 | 1.487 (4) | C11—H13 | 0.960 |
N3—C9 | 1.483 (5) | C12—C13 | 1.374 (6) |
N3—C16 | 1.485 (5) | C12—H14 | 0.960 |
N4—C10 | 1.341 (4) | C13—C14 | 1.379 (5) |
N4—C14 | 1.337 (4) | C13—H15 | 0.960 |
C1—C2 | 1.381 (5) | C14—H16 | 0.960 |
C1—H1 | 0.960 | C15—H17 | 0.960 |
C2—C3 | 1.371 (6) | C15—H18 | 0.960 |
C2—H2 | 0.960 | C15—H19 | 0.960 |
C3—C4 | 1.385 (6) | C16—H20 | 0.960 |
C3—H3 | 0.960 | C16—H21 | 0.960 |
C4—C5 | 1.384 (5) | C16—H22 | 0.960 |
Cu1···O2 | 3.556 (5) | O3···C12iv | 3.438 (5) |
Cl1···C2i | 3.520 (4) | O3···C3v | 3.465 (5) |
O1···C13ii | 3.285 (6) | O3···C15vi | 3.553 (6) |
O1···C14ii | 3.322 (6) | O3···C16vii | 3.594 (6) |
O1···C8iii | 3.425 (7) | O4···C1ii | 3.304 (5) |
O1···C6iii | 3.573 (7) | O4···C2ii | 3.374 (5) |
O2···N4 | 3.333 (5) | O4···C10 | 3.400 (6) |
O2···C13iv | 3.376 (6) | O4···C11 | 3.517 (6) |
O2···C12iv | 3.490 (6) | C1···C11vii | 3.586 (5) |
O2···C9 | 3.494 (7) | C2···C11vii | 3.486 (6) |
O2···N1 | 3.523 (6) | C2···C12vii | 3.528 (6) |
O2···C10 | 3.533 (6) | C6···C13iv | 3.539 (5) |
Cl1—Cu1—N1 | 95.6 (1) | N2—C6—H5 | 109.9 |
Cl1—Cu1—N2 | 105.0 (1) | N2—C6—H6 | 109.9 |
Cl1—Cu1—N3 | 113.3 (1) | C5—C6—H5 | 109.9 |
Cl1—Cu1—N4 | 92.6 (1) | C5—C6—H6 | 109.9 |
N1—Cu1—N2 | 80.8 (1) | H5—C6—H6 | 109.5 |
N1—Cu1—N3 | 150.1 (1) | N2—C7—C8 | 109.8 (3) |
N1—Cu1—N4 | 105.0 (1) | N2—C7—H7 | 109.4 |
N2—Cu1—N3 | 84.2 (1) | N2—C7—H8 | 109.4 |
N2—Cu1—N4 | 161.0 (1) | C8—C7—H7 | 109.4 |
N3—Cu1—N4 | 82.2 (1) | C8—C7—H8 | 109.4 |
O1—Cl2—O2 | 107.9 (5) | H7—C7—H8 | 109.5 |
O1—Cl2—O3 | 109.4 (3) | N3—C8—C7 | 109.0 (3) |
O1—Cl2—O4 | 111.6 (4) | N3—C8—H9 | 109.6 |
O2—Cl2—O3 | 108.5 (3) | N3—C8—H10 | 109.6 |
O2—Cl2—O4 | 106.4 (3) | C7—C8—H9 | 109.6 |
O3—Cl2—O4 | 112.9 (2) | C7—C8—H10 | 109.6 |
Cu1—N1—C1 | 128.9 (2) | H9—C8—H10 | 109.5 |
Cu1—N1—C5 | 111.8 (2) | N3—C9—C10 | 109.5 (3) |
C1—N1—C5 | 118.2 (3) | N3—C9—H11 | 109.5 |
Cu1—N2—C6 | 101.7 (2) | N3—C9—H12 | 109.5 |
Cu1—N2—C7 | 109.4 (2) | C10—C9—H11 | 109.5 |
Cu1—N2—C15 | 114.2 (2) | C10—C9—H12 | 109.5 |
C6—N2—C7 | 111.1 (3) | H11—C9—H12 | 109.5 |
C6—N2—C15 | 109.9 (3) | N4—C10—C9 | 115.6 (3) |
C7—N2—C15 | 110.2 (3) | N4—C10—C11 | 122.0 (3) |
Cu1—N3—C8 | 106.1 (2) | C9—C10—C11 | 122.3 (3) |
Cu1—N3—C9 | 108.1 (2) | C10—C11—C12 | 118.7 (3) |
Cu1—N3—C16 | 110.1 (2) | C10—C11—H13 | 120.7 |
C8—N3—C9 | 111.1 (3) | C12—C11—H13 | 120.7 |
C8—N3—C16 | 112.0 (3) | C11—C12—C13 | 119.5 (3) |
C9—N3—C16 | 109.3 (3) | C11—C12—H14 | 120.3 |
Cu1—N4—C10 | 113.7 (2) | C13—C12—H14 | 120.3 |
Cu1—N4—C14 | 127.1 (2) | C12—C13—C14 | 118.7 (3) |
C10—N4—C14 | 118.5 (3) | C12—C13—H15 | 120.6 |
N1—C1—C2 | 122.6 (3) | C14—C13—H15 | 120.6 |
N1—C1—H1 | 118.7 | N4—C14—C13 | 122.5 (3) |
C2—C1—H1 | 118.7 | N4—C14—H16 | 118.7 |
C1—C2—C3 | 118.6 (3) | C13—C14—H16 | 118.8 |
C1—C2—H2 | 120.7 | N2—C15—H17 | 109.5 |
C3—C2—H2 | 120.7 | N2—C15—H18 | 109.5 |
C2—C3—C4 | 119.7 (3) | N2—C15—H19 | 109.5 |
C2—C3—H3 | 120.1 | H17—C15—H18 | 109.5 |
C4—C3—H3 | 120.1 | H17—C15—H19 | 109.5 |
C3—C4—C5 | 118.6 (3) | H18—C15—H19 | 109.5 |
C3—C4—H4 | 120.7 | N3—C16—H20 | 109.5 |
C5—C4—H4 | 120.7 | N3—C16—H21 | 109.5 |
N1—C5—C4 | 122.2 (3) | N3—C16—H22 | 109.5 |
N1—C5—C6 | 114.0 (3) | H20—C16—H21 | 109.5 |
C4—C5—C6 | 123.8 (3) | H20—C16—H22 | 109.5 |
N2—C6—C5 | 107.8 (3) | H21—C16—H22 | 109.5 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+2, y−1/2, −z+1/2; (iii) −x+2, −y, −z+1; (iv) x, −y+1/2, z+1/2; (v) −x+2, −y+1, −z+1; (vi) x+1, y, z; (vii) −x+2, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [CuCl(C16H22N4)]ClO4 |
Mr | 468.83 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 299 |
a, b, c (Å) | 11.044 (2), 11.085 (1), 15.858 (1) |
β (°) | 95.100 (9) |
V (Å3) | 1933.8 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.44 |
Crystal size (mm) | 0.6 × 0.5 × 0.2 |
Data collection | |
Diffractometer | Rigaku AFC-5S diffractometer |
Absorption correction | Integration (Coppens et al., 1965) |
Tmin, Tmax | 0.365, 0.764 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4916, 4445, 3426 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.122, 1.51 |
No. of reflections | 4445 |
No. of parameters | 244 |
No. of restraints | ? |
H-atom treatment | H-atom parameters not refined |
Δρmax, Δρmin (e Å−3) | 0.98, −0.68 |
Computer programs: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1993), MSC/AFC Diffractometer Control Software, TEXSAN (Molecular Structure Corporation, 1999), SIR92 (Altomare et al., 1994), TEXSAN.
Cu1—Cl1 | 2.421 (1) | Cu1—N3 | 2.046 (3) |
Cu1—N1 | 2.053 (3) | Cu1—N4 | 2.031 (3) |
Cu1—N2 | 2.068 (3) |
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DNA degradation by the copper(II) complexes with tripodal ligands has been investigated by one (YN) of the authors (Kobayashi et al., 1996; Kobayashi et al., 1998). The structure of [Cu(mep)Cl]ClO4, (I), where mep is 1,6-bis(2-pyridylmethyl)-2,5-diazahexane, is reported here.