Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808029425/bv2107sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536808029425/bv2107Isup2.hkl |
CCDC reference: 706091
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.003 Å
- R factor = 0.046
- wR factor = 0.141
- Data-to-parameter ratio = 13.4
checkCIF/PLATON results
No syntax errors found
Alert level B ABSTM02_ALERT_3_B The ratio of expected to reported Tmax/Tmin(RR') is < 0.75 Tmin and Tmax reported: 0.609 1.000 Tmin(prime) and Tmax expected: 0.929 0.940 RR(prime) = 0.616 Please check that your absorption correction is appropriate. PLAT061_ALERT_4_B Tmax/Tmin Range Test RR' too Large ............. 0.62
Alert level C PLAT230_ALERT_2_C Hirshfeld Test Diff for S1 -- C8 .. 5.20 su PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for N1 PLAT432_ALERT_2_C Short Inter X...Y Contact S1 .. C1 .. 3.20 Ang. PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.94 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
Alert level G ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.940 Tmax scaled 0.940 Tmin scaled 0.572
0 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 6 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
All chemicals used for the preparation of the title compound were of reagent grade quality. The infrared spectrum was recorded in the range of 4000–400 cm-1 on a Nicolet NEXUS 670 F T—IR spectrometer, using KBr pellets. 1H NMR spectrum was obtained on an INOVA-400 MHz superconducting spectrometer, CDCl3 was used as the solvent and TMS as internal standard, and the chemical shifts are expressed as delta. Elemental analyses were carried out on a PE-2400 elemental analysis instrument. Melting point determination was performed in YRT-3 melting point instrument (Tianjin) and was uncorrected. The yellow single-crystal was obtained after one week by slow evaporation of the acetone solution of the title compound. N-p-nitrobenzoyl-N'-(m-methylphenyl)thiourea. Color: yellow. Melting Point: 151–153 (°C). Elemental analysis (%) found (calcd.): C, 56.3(61.5); H, 4.11(4.7); N, 10.3(13.2); S, 10.2(10.0). IR (KBr, cm-1): 3244 (N—H), 1675 (C=O), 1521(C=C), 1336, 1264(C=S), 1151. 1H NMR(delta, p.p.m.): 2.40 (s, 3H, CH3); 6.91–9.07 (m, 8H, C6H4, C6H4); 12.30 (s, 1H, NH).
The amino hydrogen atoms were found from Fourier difference maps and fixed with N—H bond lengths of 0.86 Å. The H atoms of the aromatic group were geometrically idealized. The methyl H atoms were idealized to tetrahedral geometry and allowed to freely rotate about the C-C vector. All the H atoms were refined isotropically with isotropic vibration parameters related to the atoms to which they are bonded.
Data collection: SMART (Bruker, 2001); cell refinement: SMART (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C15H13N3O3S | F(000) = 656 |
Mr = 315.34 | Dx = 1.446 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 11.381 (10) Å | Cell parameters from 2974 reflections |
b = 8.549 (8) Å | θ = 2.7–29.0° |
c = 15.653 (12) Å | µ = 0.24 mm−1 |
β = 108.012 (16)° | T = 296 K |
V = 1448 (3) Å3 | Block, yellow |
Z = 4 | 0.30 × 0.29 × 0.26 mm |
Bruker APEXII CCD area-detector diffractometer | 2692 independent reflections |
Radiation source: fine-focus sealed tube | 2072 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.059 |
ϕ and ω scans | θmax = 25.5°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = −13→13 |
Tmin = 0.609, Tmax = 1.000 | k = −5→10 |
7125 measured reflections | l = −18→18 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
wR(F2) = 0.141 | w = 1/[σ2(Fo2) + (0.1P)2 + 0.161P] where P = (Fo2 + 2Fc2)/3 |
S = 0.89 | (Δ/σ)max < 0.001 |
2692 reflections | Δρmax = 0.29 e Å−3 |
201 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.038 (4) |
C15H13N3O3S | V = 1448 (3) Å3 |
Mr = 315.34 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.381 (10) Å | µ = 0.24 mm−1 |
b = 8.549 (8) Å | T = 296 K |
c = 15.653 (12) Å | 0.30 × 0.29 × 0.26 mm |
β = 108.012 (16)° |
Bruker APEXII CCD area-detector diffractometer | 2692 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2072 reflections with I > 2σ(I) |
Tmin = 0.609, Tmax = 1.000 | Rint = 0.059 |
7125 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 0.89 | Δρmax = 0.29 e Å−3 |
2692 reflections | Δρmin = −0.22 e Å−3 |
201 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.16111 (5) | 0.07187 (6) | 0.10213 (3) | 0.0457 (2) | |
C6 | −0.05997 (17) | 0.3452 (2) | −0.17937 (12) | 0.0385 (5) | |
C8 | 0.14304 (16) | 0.2443 (2) | 0.05209 (11) | 0.0368 (5) | |
N2 | 0.05371 (14) | 0.25694 (19) | −0.03121 (10) | 0.0395 (4) | |
H2' | 0.0037 | 0.1792 | −0.0469 | 0.047* | |
C9 | 0.30022 (17) | 0.3945 (2) | 0.16605 (12) | 0.0379 (5) | |
C7 | 0.03499 (18) | 0.3776 (3) | −0.09162 (13) | 0.0413 (5) | |
O3 | 0.09358 (15) | 0.4980 (2) | −0.07658 (10) | 0.0612 (5) | |
N4 | 0.20710 (15) | 0.3727 (2) | 0.08184 (10) | 0.0416 (4) | |
H4' | 0.1908 | 0.4522 | 0.0464 | 0.050* | |
C10 | 0.28304 (18) | 0.3445 (3) | 0.24483 (12) | 0.0427 (5) | |
H10 | 0.2111 | 0.2913 | 0.2433 | 0.051* | |
N1 | −0.30000 (18) | 0.2241 (2) | −0.43126 (12) | 0.0545 (5) | |
C3 | −0.21803 (18) | 0.2731 (2) | −0.34317 (12) | 0.0406 (5) | |
C1 | −0.16868 (17) | 0.2707 (2) | −0.18569 (12) | 0.0391 (5) | |
H1 | −0.1879 | 0.2449 | −0.1338 | 0.047* | |
C2 | −0.24957 (18) | 0.2339 (2) | −0.26833 (13) | 0.0422 (5) | |
H2 | −0.3239 | 0.1835 | −0.2733 | 0.051* | |
C12 | 0.4762 (2) | 0.4543 (3) | 0.32628 (15) | 0.0544 (6) | |
H12 | 0.5374 | 0.4737 | 0.3804 | 0.065* | |
C11 | 0.37229 (19) | 0.3729 (3) | 0.32641 (13) | 0.0465 (5) | |
C5 | −0.03345 (18) | 0.3910 (3) | −0.25606 (13) | 0.0465 (5) | |
H5 | 0.0384 | 0.4468 | −0.2515 | 0.056* | |
C4 | −0.11358 (19) | 0.3537 (3) | −0.33902 (13) | 0.0470 (5) | |
H4 | −0.0967 | 0.3830 | −0.3912 | 0.056* | |
C14 | 0.40313 (18) | 0.4767 (3) | 0.16660 (14) | 0.0479 (5) | |
H14 | 0.4140 | 0.5118 | 0.1133 | 0.058* | |
C13 | 0.49105 (19) | 0.5068 (3) | 0.24843 (16) | 0.0539 (6) | |
H13 | 0.5613 | 0.5639 | 0.2501 | 0.065* | |
O1 | −0.27911 (18) | 0.2717 (3) | −0.49730 (10) | 0.0787 (6) | |
O2 | −0.38159 (19) | 0.1337 (3) | −0.43392 (12) | 0.0918 (7) | |
C15 | 0.3541 (3) | 0.3154 (4) | 0.41178 (14) | 0.0725 (8) | |
H15A | 0.3351 | 0.2057 | 0.4065 | 0.109* | |
H15B | 0.2872 | 0.3715 | 0.4228 | 0.109* | |
H15C | 0.4284 | 0.3321 | 0.4607 | 0.109* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0441 (4) | 0.0420 (4) | 0.0431 (3) | 0.0008 (2) | 0.0017 (2) | 0.0030 (2) |
C6 | 0.0384 (10) | 0.0398 (11) | 0.0356 (10) | 0.0041 (9) | 0.0088 (8) | 0.0034 (9) |
C8 | 0.0325 (9) | 0.0458 (12) | 0.0321 (9) | 0.0017 (8) | 0.0100 (8) | −0.0033 (8) |
N2 | 0.0390 (9) | 0.0397 (9) | 0.0346 (8) | −0.0011 (7) | 0.0039 (7) | 0.0009 (7) |
C9 | 0.0325 (9) | 0.0403 (11) | 0.0369 (10) | 0.0032 (8) | 0.0050 (8) | −0.0037 (9) |
C7 | 0.0398 (11) | 0.0424 (11) | 0.0392 (10) | −0.0006 (9) | 0.0083 (8) | 0.0004 (9) |
O3 | 0.0644 (10) | 0.0559 (10) | 0.0488 (9) | −0.0186 (9) | −0.0035 (7) | 0.0098 (8) |
N4 | 0.0423 (9) | 0.0412 (10) | 0.0357 (8) | −0.0034 (8) | 0.0038 (7) | 0.0016 (8) |
C10 | 0.0379 (10) | 0.0470 (12) | 0.0408 (11) | −0.0010 (9) | 0.0086 (8) | −0.0046 (10) |
N1 | 0.0497 (11) | 0.0658 (13) | 0.0411 (10) | 0.0018 (10) | 0.0036 (8) | −0.0009 (9) |
C3 | 0.0378 (10) | 0.0457 (12) | 0.0339 (10) | 0.0052 (9) | 0.0045 (8) | −0.0005 (9) |
C1 | 0.0433 (11) | 0.0407 (11) | 0.0342 (9) | 0.0019 (9) | 0.0134 (8) | 0.0035 (9) |
C2 | 0.0349 (10) | 0.0448 (11) | 0.0458 (11) | 0.0011 (9) | 0.0108 (8) | 0.0029 (9) |
C12 | 0.0398 (12) | 0.0633 (15) | 0.0474 (12) | 0.0050 (11) | −0.0051 (9) | −0.0084 (11) |
C11 | 0.0470 (12) | 0.0497 (12) | 0.0379 (10) | 0.0091 (10) | 0.0058 (9) | −0.0015 (10) |
C5 | 0.0362 (10) | 0.0610 (14) | 0.0415 (11) | −0.0053 (10) | 0.0110 (9) | 0.0039 (10) |
C4 | 0.0450 (11) | 0.0609 (14) | 0.0365 (10) | 0.0010 (10) | 0.0145 (9) | 0.0052 (10) |
C14 | 0.0391 (11) | 0.0546 (13) | 0.0490 (12) | 0.0009 (10) | 0.0120 (9) | 0.0014 (10) |
C13 | 0.0313 (10) | 0.0620 (15) | 0.0617 (13) | −0.0068 (10) | 0.0046 (9) | −0.0052 (12) |
O1 | 0.0929 (14) | 0.0997 (16) | 0.0343 (8) | −0.0134 (12) | 0.0062 (8) | 0.0072 (9) |
O2 | 0.0754 (12) | 0.1309 (19) | 0.0583 (11) | −0.0485 (14) | 0.0046 (9) | −0.0138 (12) |
C15 | 0.0825 (18) | 0.090 (2) | 0.0401 (12) | −0.0026 (16) | 0.0122 (12) | 0.0013 (13) |
S1—C8 | 1.652 (3) | C3—C4 | 1.358 (3) |
C6—C1 | 1.368 (3) | C3—C2 | 1.369 (3) |
C6—C5 | 1.382 (3) | C1—C2 | 1.372 (3) |
C6—C7 | 1.488 (3) | C1—H1 | 0.9300 |
C8—N4 | 1.320 (3) | C2—H2 | 0.9300 |
C8—N2 | 1.388 (2) | C12—C13 | 1.358 (4) |
N2—C7 | 1.371 (3) | C12—C11 | 1.372 (3) |
N2—H2' | 0.8600 | C12—H12 | 0.9300 |
C9—C14 | 1.364 (3) | C11—C15 | 1.497 (3) |
C9—C10 | 1.375 (3) | C5—C4 | 1.374 (3) |
C9—N4 | 1.425 (3) | C5—H5 | 0.9300 |
C7—O3 | 1.210 (3) | C4—H4 | 0.9300 |
N4—H4' | 0.8600 | C14—C13 | 1.384 (3) |
C10—C11 | 1.385 (3) | C14—H14 | 0.9300 |
C10—H10 | 0.9300 | C13—H13 | 0.9300 |
N1—O2 | 1.199 (3) | C15—H15A | 0.9600 |
N1—O1 | 1.201 (3) | C15—H15B | 0.9600 |
N1—C3 | 1.467 (3) | C15—H15C | 0.9600 |
C1—C6—C5 | 120.32 (18) | C2—C1—H1 | 119.9 |
C1—C6—C7 | 122.42 (18) | C3—C2—C1 | 118.3 (2) |
C5—C6—C7 | 117.25 (19) | C3—C2—H2 | 120.9 |
N4—C8—N2 | 115.52 (18) | C1—C2—H2 | 120.9 |
N4—C8—S1 | 126.90 (15) | C13—C12—C11 | 121.0 (2) |
N2—C8—S1 | 117.56 (15) | C13—C12—H12 | 119.5 |
C7—N2—C8 | 128.27 (18) | C11—C12—H12 | 119.5 |
C7—N2—H2' | 115.9 | C12—C11—C10 | 118.3 (2) |
C8—N2—H2' | 115.9 | C12—C11—C15 | 121.7 (2) |
C14—C9—C10 | 120.97 (18) | C10—C11—C15 | 120.1 (2) |
C14—C9—N4 | 117.68 (18) | C4—C5—C6 | 119.7 (2) |
C10—C9—N4 | 121.17 (19) | C4—C5—H5 | 120.1 |
O3—C7—N2 | 123.19 (19) | C6—C5—H5 | 120.1 |
O3—C7—C6 | 122.51 (19) | C3—C4—C5 | 118.59 (19) |
N2—C7—C6 | 114.24 (18) | C3—C4—H4 | 120.7 |
C8—N4—C9 | 127.32 (17) | C5—C4—H4 | 120.7 |
C8—N4—H4' | 116.3 | C9—C14—C13 | 118.4 (2) |
C9—N4—H4' | 116.3 | C9—C14—H14 | 120.8 |
C9—C10—C11 | 120.3 (2) | C13—C14—H14 | 120.8 |
C9—C10—H10 | 119.8 | C12—C13—C14 | 120.9 (2) |
C11—C10—H10 | 119.8 | C12—C13—H13 | 119.5 |
O2—N1—O1 | 123.1 (2) | C14—C13—H13 | 119.5 |
O2—N1—C3 | 118.5 (2) | C11—C15—H15A | 109.5 |
O1—N1—C3 | 118.3 (2) | C11—C15—H15B | 109.5 |
C4—C3—C2 | 122.73 (18) | H15A—C15—H15B | 109.5 |
C4—C3—N1 | 118.87 (18) | C11—C15—H15C | 109.5 |
C2—C3—N1 | 118.4 (2) | H15A—C15—H15C | 109.5 |
C6—C1—C2 | 120.21 (18) | H15B—C15—H15C | 109.5 |
C6—C1—H1 | 119.9 | ||
N4—C8—N2—C7 | 9.9 (3) | C5—C6—C1—C2 | 3.3 (3) |
S1—C8—N2—C7 | −168.46 (16) | C7—C6—C1—C2 | −175.48 (19) |
C8—N2—C7—O3 | −4.2 (3) | C4—C3—C2—C1 | −3.5 (3) |
C8—N2—C7—C6 | 173.12 (17) | N1—C3—C2—C1 | 175.73 (18) |
C1—C6—C7—O3 | −141.1 (2) | C6—C1—C2—C3 | 0.2 (3) |
C5—C6—C7—O3 | 40.1 (3) | C13—C12—C11—C10 | 0.5 (3) |
C1—C6—C7—N2 | 41.5 (3) | C13—C12—C11—C15 | −179.4 (2) |
C5—C6—C7—N2 | −137.3 (2) | C9—C10—C11—C12 | 1.2 (3) |
N2—C8—N4—C9 | 177.28 (17) | C9—C10—C11—C15 | −178.8 (2) |
S1—C8—N4—C9 | −4.5 (3) | C1—C6—C5—C4 | −3.6 (3) |
C14—C9—N4—C8 | 138.7 (2) | C7—C6—C5—C4 | 175.16 (19) |
C10—C9—N4—C8 | −46.1 (3) | C2—C3—C4—C5 | 3.1 (3) |
C14—C9—C10—C11 | −2.0 (3) | N1—C3—C4—C5 | −176.1 (2) |
N4—C9—C10—C11 | −177.11 (18) | C6—C5—C4—C3 | 0.5 (3) |
O2—N1—C3—C4 | 169.0 (2) | C10—C9—C14—C13 | 1.0 (3) |
O1—N1—C3—C4 | −8.1 (3) | N4—C9—C14—C13 | 176.2 (2) |
O2—N1—C3—C2 | −10.3 (3) | C11—C12—C13—C14 | −1.5 (4) |
O1—N1—C3—C2 | 172.6 (2) | C9—C14—C13—C12 | 0.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2′···S1i | 0.86 | 2.81 | 3.665 (4) | 179 |
N4—H4′···O3 | 0.86 | 1.94 | 2.643 (3) | 138 |
Symmetry code: (i) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C15H13N3O3S |
Mr | 315.34 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 11.381 (10), 8.549 (8), 15.653 (12) |
β (°) | 108.012 (16) |
V (Å3) | 1448 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.30 × 0.29 × 0.26 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.609, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7125, 2692, 2072 |
Rint | 0.059 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.141, 0.89 |
No. of reflections | 2692 |
No. of parameters | 201 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.22 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2'···S1i | 0.860 | 2.805 | 3.665 (4) | 178.72 |
N4—H4'···O3 | 0.860 | 1.941 | 2.643 (3) | 137.91 |
Symmetry code: (i) −x, −y, −z. |
Thiourea and its derivatives are good ligands for forming coordination compounds with transition metal ions, especially Cu(I). Our previous research showed that coordination compounds of carbonylthiourea derivatives with Cu(I) often adopt a trigonal planar conformation (Xian et al., 2004). In addition, it was found that the reaction of carbonylthiourea derivatives with Cu(I) can also form a metal cluster compound with a complex structure (Su et al., 2005). Apparently, the coordinating ability of carbonylthiorea derivatives is related to their conformation and hydrogen bonds. Herein the structure of N-p-nitrobenzoyl-N'-(m-methylphenyl)thiourea and its FT—IR, 1H NMR was reported.
As shown in Fig. 1, the title compound adopts a trans-conformation similar to the other structures of thiourea derivatives (Su et al., 2006; Su, 2007), i.e. the conformation in which the thiocarbonyl and carbonyl groups are distributed on opposite sides of the main backbone due to steric restriction. On the other hand, steric restriction and hydrogen bond interactions also result in dimer formation through the "head-tail" junction conformation of the title compound (Fig. 2). The thiocarbonyl group forms an intermolecular hydrogen bond with N—H (-x, -y, -z), and the carbonyl group forms intramolecular hydrogen bond with N—H (x, y, z). Apparently, the carbonyl oxygen atom is "locked" in the hydrogen-bonded six-membered ring structure and thus not readily available for coordination with transition metal ions. There are mainly two molecular planes in the structure, two benzene rings almost are in the same plane with the mean deviation 0.078 (4) Å, another plane is the hydrogen-bonding six-membered ring with the mean deviation 0.055 (4) Å. The angle between two benzene planes is 41.39(0.09)°. The above conformation is similar to that observed in previously reported thiourea structures (Su, 2005; Yusof et al., 2007).