Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536814007326/bx2456sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536814007326/bx2456Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S1600536814007326/bx2456Isup3.cml |
CCDC reference: 994982
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.003 Å
- R factor = 0.035
- wR factor = 0.088
- Data-to-parameter ratio = 19.2
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT015_ALERT_5_A No _shelx_hkl_file record in SHELXL20xy CIF ... Please Do !
Alert level C PLAT906_ALERT_3_C Large K value in the Analysis of Variance ...... 2.283 Check PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 5 Why ? PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 3 Note
Alert level G PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF Please Do ! PLAT910_ALERT_3_G Missing # of FCF Reflections Below Th(Min) ..... 1 Why ? PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 10 Note
1 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 3 ALERT level C = Check. Ensure it is not caused by an omission or oversight 3 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check
The disulfide bonds are found in proteins (Sevier and Kaiser, 2006), natural products and pharmacologically active compounds. Disulfide compounds have shown to exhibit activity as fungicide, mildew-proofing (Crowley, 1964) and antitumor agents (Hashash et al., 2002). In organic synthesis disulfides are used in cross-coupling reactions catalyzed by transition metal compounds such as palladium, nickel and copper (Gomez-Benitez et al., 2006; Yu et al., 2010).
Several methods for the synthesis of disulfides have been reported. These processes involve the oxidative coupling of mercaptans by various oxidants such as molecular oxygen, nitric oxide, solvent-free permanganate, metal ions and promoted by sulfonyl chloride in aqueous media (Xiao et al., 2009; Shaabani et al., 2008; Ogilby, 2010).
Thus, in this report we present the crystal structure of the bis(2,3-dichlorophenyl)disulfide obtained by a nucleophilic substitution reaction. The structure is represented in figure 1.
The title compound was obtained as a by-product of the reaction between 2-(chloromethyl)benzimidazole (0.2 g) and the lead salt of 2,3-dichlorobenzethiol ([Pb(SC6H3-2,3-Cl2)2]) (0.337 g) in toluene. The resulting reaction mixture was allowed to proceed under reflux by 8 h after which time the formation of PbCl2 was observed indicating completion of the reaction. The reaction mixture was then filtered through a short Celite plug to afford a colorless solution, the solvent was evaporated under vacuum and the residue column chromatographed (silica gel 60, eluted with 3/2 ethyl acetate/hexane system). Slow Evaporation of the first fraction collected produced crystals of the title compound suitable for X-ray diffraction analysis.
Crystal data, data collection and structure refinement details are summarized in Table 1.
H atoms were included in calculated positions (C—H = 0.93 A for aromatic H) and refined using a riding model with Uiso(H) = 1.2 Ueq of the carrier atoms.
In the refinement six reflections, (2 0 0), (0 1 3), (0 0 1), (-2 1 2), (2 -4 3) and (-1 0 1), were considered as disagreeable and were omitted.
The asymmetric unit of the title compound consists of one molecule on the disulfide. The rings of the bis(2,3-dichlorophenyl)disulfide show a dihedral angle of 89.83° between the two planes and a torsion angle C1—S1—S2—C7 of 88.35 (11)°. The value of the C—S—S—C torsion angle is similar to those found in similar compounds, such as bis(pentachlorophenyl)disulfide (Deng et al., 2003), diphenyldisulfide (Korp & Bernal, 1984) and bis(4-amino-2-chlorophenyl)disulfide (Tang et al., 2011). The S—S distance is 2.0252 (8) Å, whereas the C—S distances are 1.784 (2) and 1.7835 (19) Å. These values are similar and close in value to compounds such as bis(pentachlorophenyl)disulfide with a S—S distance of 2.063 (2) Å and bis(4-amino-2-chlorophenyl)disulfide of 2.0671 (16) Å. The crystal packing is stabilized by π-π and Cl···Cl interactions (Figure 2). The π-π interactions of the 2,3-dichlorophenyl rings presents distances between centroids of 3.696 (1) and 3.641 (2) Å. The Cl1···Cl2 contact distance is of 3.476 Å that is close to the sum of the van der Waals radii of the chloride atoms (Bondi, 1964). The sulphur atoms present C—H···S intramolecular interactions, these values are in the table 1.
Data collection: APEX2 (Bruker, 2012); cell refinement: SAINT (Bruker, 2012); data reduction: SAINT (Bruker, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
C12H6Cl4S2 | Z = 2 |
Mr = 356.09 | F(000) = 356 |
Triclinic, P1 | Dx = 1.715 Mg m−3 |
a = 7.7149 (10) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.7326 (11) Å | Cell parameters from 4288 reflections |
c = 12.748 (2) Å | θ = 2.8–27.5° |
α = 91.472 (2)° | µ = 1.14 mm−1 |
β = 91.233 (3)° | T = 298 K |
γ = 114.859 (2)° | Prism, colourless |
V = 689.37 (18) Å3 | 0.37 × 0.24 × 0.14 mm |
Bruker SMART APEX CCD diffractometer | 3130 independent reflections |
Radiation source: fine-focus sealed tube | 2594 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
Detector resolution: 8.333 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | k = −10→10 |
Tmin = 0.678, Tmax = 0.862 | l = −16→16 |
7044 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0397P)2 + 0.1749P] where P = (Fo2 + 2Fc2)/3 |
3130 reflections | (Δ/σ)max < 0.001 |
163 parameters | Δρmax = 0.41 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C12H6Cl4S2 | γ = 114.859 (2)° |
Mr = 356.09 | V = 689.37 (18) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.7149 (10) Å | Mo Kα radiation |
b = 7.7326 (11) Å | µ = 1.14 mm−1 |
c = 12.748 (2) Å | T = 298 K |
α = 91.472 (2)° | 0.37 × 0.24 × 0.14 mm |
β = 91.233 (3)° |
Bruker SMART APEX CCD diffractometer | 3130 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | 2594 reflections with I > 2σ(I) |
Tmin = 0.678, Tmax = 0.862 | Rint = 0.023 |
7044 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.41 e Å−3 |
3130 reflections | Δρmin = −0.30 e Å−3 |
163 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.81619 (10) | 0.72799 (9) | 0.12199 (5) | 0.06495 (19) | |
Cl2 | 1.23381 (10) | 0.95252 (8) | 0.04969 (5) | 0.0714 (2) | |
Cl3 | 0.64782 (10) | −0.26178 (7) | 0.37441 (5) | 0.06220 (18) | |
Cl4 | 0.75120 (11) | −0.22491 (11) | 0.61516 (5) | 0.0772 (2) | |
S1 | 0.67633 (8) | 0.32903 (8) | 0.20430 (5) | 0.05302 (16) | |
S2 | 0.64526 (8) | 0.07120 (7) | 0.25388 (4) | 0.05061 (16) | |
C1 | 0.9189 (3) | 0.4447 (3) | 0.16702 (13) | 0.0369 (4) | |
C2 | 0.9766 (3) | 0.6267 (3) | 0.12843 (13) | 0.0372 (4) | |
C3 | 1.1620 (3) | 0.7266 (3) | 0.09688 (15) | 0.0433 (4) | |
C4 | 1.2912 (3) | 0.6466 (3) | 0.10343 (18) | 0.0539 (5) | |
H4 | 1.4159 | 0.7138 | 0.0825 | 0.065* | |
C5 | 1.2338 (3) | 0.4663 (3) | 0.14126 (18) | 0.0548 (5) | |
H5 | 1.3207 | 0.4119 | 0.1455 | 0.066* | |
C6 | 1.0495 (3) | 0.3650 (3) | 0.17301 (16) | 0.0462 (5) | |
H6 | 1.0129 | 0.2434 | 0.1984 | 0.055* | |
C7 | 0.7117 (3) | 0.1092 (3) | 0.39027 (14) | 0.0364 (4) | |
C8 | 0.7107 (3) | −0.0468 (3) | 0.44284 (14) | 0.0378 (4) | |
C9 | 0.7575 (3) | −0.0306 (3) | 0.54892 (16) | 0.0447 (5) | |
C10 | 0.8069 (3) | 0.1407 (4) | 0.60354 (17) | 0.0564 (6) | |
H10 | 0.8395 | 0.1517 | 0.6748 | 0.068* | |
C11 | 0.8078 (3) | 0.2947 (3) | 0.55208 (18) | 0.0561 (6) | |
H11 | 0.8405 | 0.4099 | 0.5891 | 0.067* | |
C12 | 0.7608 (3) | 0.2809 (3) | 0.44603 (17) | 0.0460 (5) | |
H12 | 0.7620 | 0.3864 | 0.4121 | 0.055* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0859 (4) | 0.0712 (4) | 0.0671 (4) | 0.0592 (3) | 0.0296 (3) | 0.0276 (3) |
Cl2 | 0.0806 (4) | 0.0444 (3) | 0.0751 (4) | 0.0115 (3) | 0.0078 (3) | 0.0195 (3) |
Cl3 | 0.0915 (5) | 0.0416 (3) | 0.0596 (4) | 0.0333 (3) | 0.0146 (3) | 0.0022 (2) |
Cl4 | 0.0910 (5) | 0.0889 (5) | 0.0677 (4) | 0.0512 (4) | 0.0099 (3) | 0.0389 (3) |
S1 | 0.0447 (3) | 0.0628 (3) | 0.0570 (3) | 0.0262 (3) | 0.0104 (2) | 0.0284 (3) |
S2 | 0.0609 (3) | 0.0430 (3) | 0.0377 (3) | 0.0117 (2) | −0.0002 (2) | 0.0080 (2) |
C1 | 0.0414 (10) | 0.0419 (9) | 0.0290 (9) | 0.0188 (8) | 0.0000 (7) | 0.0059 (7) |
C2 | 0.0487 (11) | 0.0412 (9) | 0.0274 (9) | 0.0246 (9) | 0.0011 (7) | 0.0022 (7) |
C3 | 0.0511 (12) | 0.0395 (10) | 0.0329 (9) | 0.0128 (9) | −0.0014 (8) | 0.0030 (7) |
C4 | 0.0364 (11) | 0.0659 (14) | 0.0526 (13) | 0.0148 (10) | −0.0018 (9) | 0.0069 (11) |
C5 | 0.0465 (12) | 0.0707 (14) | 0.0576 (13) | 0.0348 (11) | −0.0038 (10) | 0.0085 (11) |
C6 | 0.0476 (11) | 0.0481 (11) | 0.0481 (11) | 0.0251 (9) | −0.0026 (9) | 0.0112 (9) |
C7 | 0.0341 (9) | 0.0373 (9) | 0.0347 (9) | 0.0116 (7) | 0.0058 (7) | 0.0057 (7) |
C8 | 0.0383 (10) | 0.0372 (9) | 0.0396 (10) | 0.0168 (8) | 0.0093 (8) | 0.0062 (7) |
C9 | 0.0377 (10) | 0.0543 (12) | 0.0433 (11) | 0.0197 (9) | 0.0065 (8) | 0.0144 (9) |
C10 | 0.0462 (12) | 0.0723 (15) | 0.0395 (11) | 0.0141 (11) | −0.0012 (9) | 0.0010 (10) |
C11 | 0.0520 (13) | 0.0469 (12) | 0.0547 (13) | 0.0070 (10) | 0.0028 (10) | −0.0125 (10) |
C12 | 0.0456 (11) | 0.0338 (9) | 0.0536 (12) | 0.0115 (8) | 0.0046 (9) | 0.0054 (8) |
Cl1—C2 | 1.7224 (19) | C5—C6 | 1.380 (3) |
Cl2—C3 | 1.725 (2) | C5—H5 | 0.9300 |
Cl3—C8 | 1.7291 (19) | C6—H6 | 0.9300 |
Cl4—C9 | 1.726 (2) | C7—C12 | 1.389 (3) |
S1—C1 | 1.784 (2) | C7—C8 | 1.392 (3) |
S1—S2 | 2.0252 (8) | C8—C9 | 1.381 (3) |
S2—C7 | 1.7834 (19) | C9—C10 | 1.378 (3) |
C1—C6 | 1.386 (3) | C10—C11 | 1.372 (3) |
C1—C2 | 1.393 (2) | C10—H10 | 0.9300 |
C2—C3 | 1.384 (3) | C11—C12 | 1.382 (3) |
C3—C4 | 1.378 (3) | C11—H11 | 0.9300 |
C4—C5 | 1.378 (3) | C12—H12 | 0.9300 |
C4—H4 | 0.9300 | ||
C1—S1—S2 | 105.09 (7) | C1—C6—H6 | 120.0 |
C7—S2—S1 | 105.02 (7) | C12—C7—C8 | 119.02 (17) |
C6—C1—C2 | 119.06 (18) | C12—C7—S2 | 124.42 (15) |
C6—C1—S1 | 124.55 (15) | C8—C7—S2 | 116.55 (14) |
C2—C1—S1 | 116.38 (14) | C9—C8—C7 | 120.32 (17) |
C3—C2—C1 | 120.36 (18) | C9—C8—Cl3 | 120.28 (15) |
C3—C2—Cl1 | 120.22 (14) | C7—C8—Cl3 | 119.39 (14) |
C1—C2—Cl1 | 119.42 (15) | C10—C9—C8 | 120.27 (19) |
C4—C3—C2 | 120.23 (18) | C10—C9—Cl4 | 119.19 (17) |
C4—C3—Cl2 | 119.41 (17) | C8—C9—Cl4 | 120.53 (16) |
C2—C3—Cl2 | 120.36 (16) | C11—C10—C9 | 119.6 (2) |
C5—C4—C3 | 119.4 (2) | C11—C10—H10 | 120.2 |
C5—C4—H4 | 120.3 | C9—C10—H10 | 120.2 |
C3—C4—H4 | 120.3 | C10—C11—C12 | 120.9 (2) |
C4—C5—C6 | 121.0 (2) | C10—C11—H11 | 119.5 |
C4—C5—H5 | 119.5 | C12—C11—H11 | 119.5 |
C6—C5—H5 | 119.5 | C11—C12—C7 | 119.85 (19) |
C5—C6—C1 | 119.93 (19) | C11—C12—H12 | 120.1 |
C5—C6—H6 | 120.0 | C7—C12—H12 | 120.1 |
S2—S1—C1—C6 | 0.06 (18) | S1—S2—C7—C12 | 3.60 (18) |
S2—S1—C1—C2 | 179.34 (12) | S1—S2—C7—C8 | −177.28 (13) |
C6—C1—C2—C3 | −0.2 (3) | C12—C7—C8—C9 | 0.1 (3) |
S1—C1—C2—C3 | −179.52 (14) | S2—C7—C8—C9 | −179.02 (14) |
C6—C1—C2—Cl1 | −179.31 (14) | C12—C7—C8—Cl3 | 179.45 (14) |
S1—C1—C2—Cl1 | 1.4 (2) | S2—C7—C8—Cl3 | 0.3 (2) |
C1—C2—C3—C4 | 0.0 (3) | C7—C8—C9—C10 | −0.5 (3) |
Cl1—C2—C3—C4 | 179.07 (16) | Cl3—C8—C9—C10 | −179.76 (16) |
C1—C2—C3—Cl2 | −179.68 (14) | C7—C8—C9—Cl4 | 178.52 (14) |
Cl1—C2—C3—Cl2 | −0.6 (2) | Cl3—C8—C9—Cl4 | −0.8 (2) |
C2—C3—C4—C5 | 0.3 (3) | C8—C9—C10—C11 | 0.6 (3) |
Cl2—C3—C4—C5 | 179.91 (17) | Cl4—C9—C10—C11 | −178.44 (17) |
C3—C4—C5—C6 | −0.3 (3) | C9—C10—C11—C12 | −0.3 (3) |
C4—C5—C6—C1 | 0.0 (3) | C10—C11—C12—C7 | 0.0 (3) |
C2—C1—C6—C5 | 0.2 (3) | C8—C7—C12—C11 | 0.1 (3) |
S1—C1—C6—C5 | 179.46 (16) | S2—C7—C12—C11 | 179.18 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···S2 | 0.93 | 2.70 | 3.202 (2) | 115 |
C12—H12···S1 | 0.93 | 2.70 | 3.199 (2) | 115 |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···S2 | 0.93 | 2.70 | 3.202 (2) | 114.9 |
C12—H12···S1 | 0.93 | 2.70 | 3.199 (2) | 114.8 |