Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810040456/cv2771sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810040456/cv2771Isup2.hkl |
CCDC reference: 799848
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.007 Å
- Disorder in main residue
- R factor = 0.071
- wR factor = 0.237
- Data-to-parameter ratio = 12.7
checkCIF/PLATON results
No syntax errors found
Alert level B SYMMS01_ALERT_1_B The cell setting should be one of the following * triclinic * monoclinic * orthorhombic * tetragonal * rhombohedral * trigonal * hexagonal * cubic Cell setting given = monoclinic'
Alert level C PLAT026_ALERT_3_C Ratio Observed / Unique Reflections too Low .... 45 Perc. PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O6 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C3 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C15 PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang .. 7 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.595 13 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ?
Alert level G PLAT072_ALERT_2_G SHELXL First Parameter in WGHT Unusually Large. 0.12 PLAT301_ALERT_3_G Note: Main Residue Disorder ................... 10.00 Perc. PLAT180_ALERT_4_G Check Cell Rounding: # of Values Ending with 0 = 3 PLAT779_ALERT_4_G Suspect or Irrelevant (Bond) Angle in CIF ...... 44.80 Deg. O2' -C3 -C4 1.555 1.555 1.555 PLAT779_ALERT_4_G Suspect or Irrelevant (Bond) Angle in CIF ...... 35.00 Deg. O2 -C3 -C4' 1.555 1.555 1.555 PLAT793_ALERT_4_G The Model has Chirality at C2 (Verify) .... R PLAT793_ALERT_4_G The Model has Chirality at C14 (Verify) .... S
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 7 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 4 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 6 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A mixture of ethylacetoacetate (0.5 mol), furfural (0.5 mol) and urea (0.6 mol) was refluxed in 50.0 ml of ethanol for 2.0 hrs. The reaction completion was monitored through thin layer chromatography and the reaction mixture was quenched in ice cold water. The precipitate obtained was filtered, dried and crystallized from methanol to obtain the title compound.
All H atoms were placed in geometrically idealized positions (N—H 0.86 and C—H = 0.93–0.97 Å) and treated as riding on their parent atoms, with Uiso(H) = 1.2U-1.5eq(C, N). Atoms C4, C5, C6, O2 were treated as disordered between two positions, with refined occupancies of 0.375 (6) and 0.625 (6).
Biginelli reaction is a well known multicomponent reaction involving a one-pot cyclocondensation of an aldehyde, β-ketoester and urea/thiourea. It is the most important procedure in the synthesis of 3,4-dihydropyrimidin-2-(1H)-ones (Biginelli, 1893). Herewith we report the crystal structure of the title compound, (I), obtained by the three-component reaction of furfuraldehyde, acetoacetate and urea.
In (I) (Fig. 1), the dihydropyrimidinone rings adopt flattened boat conformation. The asymmetric unit contains two independent molecules. In one independent molecule, the furanyl fragment is rotationally disordered in a ratio 0.625 (6):0.375 (6). The bond lengths an angles are normal and comparable to the values observed in similar compounds (Nizam Mohideen et al., 2008; Qing-Fang et al., 2007) The dihedral angles between the furan rings (C3—C6/O2, C15—C18/O6) and the mean planes of the dihydropyrimidinone rings (N1/C1/N2/C9/C8, N3/C13/N4/C21/C20) unit in two independent molecules are 88.79 (4) ° and 86.73 (2)°, respectively, indicating that the furan rings and the dihydropyrimidinone rings are nearly perpendicular.
In the crystal structure, intermolecular N—H···Opyrimidinone hydrogen bonds (Table 1) link the molecules into centrosymmetric tetramers. Tetramers are further associated into ribbons extended in direction [010] via the weak intermolecular N—H···Ocarboxyl hydrogen bonds (Table 1).
Biginelli reaction is the most important procedure in the synthesis of 3,4-dihydropyrimidin-2-(1H)-ones, see: Biginelli et al. (1893). For related structures, see: Nizam Mohideen et al. (2008); Qing-Fang et al. (2007).
Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Fig. 1. The content of asymmetric unit of the title compound showing the atomic numbering scheme and 30% probability displacement ellipsoids. Only major components of the disordered atoms are shown. |
C12H14N2O4 | F(000) = 1056 |
Mr = 250.25 | Dx = 1.361 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 12.1720 (14) Å | Cell parameters from 1664 reflections |
b = 13.3180 (15) Å | θ = 2.3–22.3° |
c = 17.116 (2) Å | µ = 0.10 mm−1 |
β = 118.300 (2)° | T = 298 K |
V = 2443.0 (5) Å3 | Block, yellow |
Z = 8 | 0.48 × 0.45 × 0.17 mm |
Bruker SMART APEX CCD area-detector diffractometer | 4298 independent reflections |
Radiation source: fine-focus sealed tube | 1943 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.069 |
φ and ω scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→14 |
Tmin = 0.952, Tmax = 0.983 | k = −14→15 |
11604 measured reflections | l = −20→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.071 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.237 | H-atom parameters constrained |
S = 0.94 | w = 1/[σ2(Fo2) + (0.1244P)2] where P = (Fo2 + 2Fc2)/3 |
4298 reflections | (Δ/σ)max = 0.001 |
338 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C12H14N2O4 | V = 2443.0 (5) Å3 |
Mr = 250.25 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.1720 (14) Å | µ = 0.10 mm−1 |
b = 13.3180 (15) Å | T = 298 K |
c = 17.116 (2) Å | 0.48 × 0.45 × 0.17 mm |
β = 118.300 (2)° |
Bruker SMART APEX CCD area-detector diffractometer | 4298 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1943 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 0.983 | Rint = 0.069 |
11604 measured reflections |
R[F2 > 2σ(F2)] = 0.071 | 0 restraints |
wR(F2) = 0.237 | H-atom parameters constrained |
S = 0.94 | Δρmax = 0.30 e Å−3 |
4298 reflections | Δρmin = −0.23 e Å−3 |
338 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.0677 (3) | 0.8975 (2) | 0.4632 (2) | 0.0478 (9) | |
H1 | 0.0351 | 0.9555 | 0.4437 | 0.057* | |
N2 | 0.0574 (3) | 0.7467 (2) | 0.5219 (2) | 0.0479 (8) | |
H2 | 0.0468 | 0.7135 | 0.5609 | 0.057* | |
N3 | 0.8736 (3) | 0.6124 (2) | 0.7072 (2) | 0.0499 (9) | |
H3 | 0.8988 | 0.5511 | 0.7182 | 0.060* | |
N4 | 0.8981 (3) | 0.7698 (2) | 0.6635 (2) | 0.0497 (8) | |
H4 | 0.9196 | 0.8075 | 0.6321 | 0.060* | |
O1 | −0.0199 (2) | 0.88634 (18) | 0.55364 (19) | 0.0574 (8) | |
O2 | 0.3239 (6) | 0.8613 (5) | 0.5879 (5) | 0.086 (2) | 0.625 (6) |
C4' | 0.3192 (18) | 0.9228 (13) | 0.5941 (13) | 0.086 (2) | 0.375 (6) |
H4' | 0.2672 | 0.9425 | 0.6173 | 0.103* | 0.375 (6) |
O3 | 0.2203 (2) | 0.7669 (2) | 0.32562 (17) | 0.0565 (8) | |
O4 | 0.1728 (3) | 0.6108 (2) | 0.3447 (2) | 0.0686 (9) | |
O5 | 0.9657 (3) | 0.63333 (18) | 0.6200 (2) | 0.0600 (8) | |
O6 | 0.6054 (4) | 0.6411 (3) | 0.5976 (3) | 0.1107 (13) | |
O7 | 0.7327 (3) | 0.7358 (2) | 0.85737 (19) | 0.0690 (9) | |
O8 | 0.7471 (3) | 0.8936 (2) | 0.8223 (2) | 0.0780 (10) | |
C1 | 0.0329 (3) | 0.8474 (3) | 0.5145 (3) | 0.0456 (10) | |
C2 | 0.1585 (3) | 0.8589 (3) | 0.4384 (3) | 0.0429 (10) | |
H2A | 0.1438 | 0.8907 | 0.3826 | 0.052* | |
C3 | 0.2873 (4) | 0.8830 (3) | 0.5074 (3) | 0.0559 (11) | |
C4 | 0.3859 (8) | 0.9166 (7) | 0.4951 (7) | 0.079 (2) | 0.625 (6) |
H4A | 0.3852 | 0.9349 | 0.4424 | 0.094* | 0.625 (6) |
C5 | 0.4870 (15) | 0.9164 (9) | 0.5815 (12) | 0.086 (4) | 0.625 (6) |
H5 | 0.5680 | 0.9359 | 0.5966 | 0.103* | 0.625 (6) |
C6 | 0.448 (2) | 0.8828 (11) | 0.6403 (17) | 0.091 (4) | 0.625 (6) |
H6 | 0.4943 | 0.8764 | 0.7016 | 0.109* | 0.625 (6) |
O2' | 0.3875 (9) | 0.8450 (8) | 0.5162 (7) | 0.079 (2) | 0.375 (6) |
C5' | 0.459 (4) | 0.924 (2) | 0.636 (3) | 0.091 (4) | 0.375 (6) |
H5' | 0.5116 | 0.9619 | 0.6855 | 0.109* | 0.375 (6) |
C6' | 0.492 (3) | 0.8685 (16) | 0.598 (2) | 0.086 (4) | 0.375 (6) |
H6' | 0.5725 | 0.8445 | 0.6184 | 0.103* | 0.375 (6) |
C7 | 0.1783 (3) | 0.6992 (3) | 0.3629 (2) | 0.0461 (9) | |
C8 | 0.1410 (3) | 0.7470 (2) | 0.4236 (2) | 0.0408 (9) | |
C9 | 0.0980 (3) | 0.6952 (3) | 0.4705 (2) | 0.0425 (9) | |
C10 | 0.0877 (4) | 0.5845 (3) | 0.4755 (3) | 0.0621 (12) | |
H10A | 0.0024 | 0.5646 | 0.4395 | 0.093* | |
H10B | 0.1149 | 0.5652 | 0.5359 | 0.093* | |
H10C | 0.1390 | 0.5523 | 0.4542 | 0.093* | |
C11 | 0.2614 (4) | 0.7310 (3) | 0.2650 (3) | 0.0666 (12) | |
H11A | 0.1938 | 0.6969 | 0.2155 | 0.080* | |
H11B | 0.3299 | 0.6842 | 0.2946 | 0.080* | |
C12 | 0.3030 (4) | 0.8203 (4) | 0.2328 (3) | 0.0828 (15) | |
H12A | 0.2344 | 0.8660 | 0.2037 | 0.124* | |
H12B | 0.3312 | 0.7988 | 0.1918 | 0.124* | |
H12C | 0.3700 | 0.8533 | 0.2823 | 0.124* | |
C13 | 0.9139 (3) | 0.6678 (3) | 0.6603 (3) | 0.0473 (10) | |
C14 | 0.7910 (3) | 0.6476 (3) | 0.7409 (3) | 0.0477 (10) | |
H14 | 0.8183 | 0.6161 | 0.7989 | 0.057* | |
C15 | 0.6605 (4) | 0.6159 (3) | 0.6829 (3) | 0.0588 (12) | |
C16 | 0.5810 (5) | 0.5651 (4) | 0.7005 (4) | 0.0925 (17) | |
H16 | 0.5969 | 0.5387 | 0.7552 | 0.111* | |
C17 | 0.4691 (6) | 0.5587 (5) | 0.6215 (6) | 0.113 (2) | |
H17 | 0.3961 | 0.5281 | 0.6141 | 0.136* | |
C18 | 0.4851 (6) | 0.6031 (6) | 0.5604 (6) | 0.126 (3) | |
H18 | 0.4254 | 0.6087 | 0.5011 | 0.151* | |
C19 | 0.7596 (4) | 0.8057 (3) | 0.8129 (3) | 0.0563 (11) | |
C20 | 0.8035 (3) | 0.7603 (3) | 0.7555 (2) | 0.0452 (9) | |
C21 | 0.8509 (3) | 0.8162 (3) | 0.7128 (2) | 0.0444 (9) | |
C22 | 0.8605 (4) | 0.9280 (3) | 0.7135 (3) | 0.0591 (12) | |
H22A | 0.7799 | 0.9562 | 0.6756 | 0.089* | |
H22B | 0.9178 | 0.9474 | 0.6924 | 0.089* | |
H22C | 0.8901 | 0.9524 | 0.7729 | 0.089* | |
C23 | 0.6852 (5) | 0.7708 (4) | 0.9158 (3) | 0.0831 (15) | |
H23A | 0.6148 | 0.8154 | 0.8839 | 0.100* | |
H23B | 0.7496 | 0.8074 | 0.9654 | 0.100* | |
C24 | 0.6464 (5) | 0.6833 (5) | 0.9477 (4) | 0.110 (2) | |
H24A | 0.5780 | 0.6508 | 0.8987 | 0.165* | |
H24B | 0.6206 | 0.7041 | 0.9903 | 0.165* | |
H24C | 0.7150 | 0.6373 | 0.9753 | 0.165* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.047 (2) | 0.0349 (18) | 0.072 (2) | 0.0098 (14) | 0.037 (2) | 0.0113 (15) |
N2 | 0.058 (2) | 0.0331 (19) | 0.065 (2) | 0.0014 (15) | 0.0384 (19) | 0.0075 (14) |
N3 | 0.053 (2) | 0.0363 (18) | 0.074 (2) | 0.0055 (14) | 0.041 (2) | 0.0085 (15) |
N4 | 0.056 (2) | 0.0355 (19) | 0.068 (2) | 0.0017 (15) | 0.038 (2) | 0.0059 (15) |
O1 | 0.0673 (18) | 0.0414 (16) | 0.088 (2) | 0.0067 (13) | 0.0563 (18) | 0.0067 (14) |
O2 | 0.068 (3) | 0.082 (5) | 0.086 (4) | −0.010 (4) | 0.019 (3) | 0.002 (5) |
C4' | 0.068 (3) | 0.082 (5) | 0.086 (4) | −0.010 (4) | 0.019 (3) | 0.002 (5) |
O3 | 0.0712 (19) | 0.0502 (17) | 0.0654 (18) | −0.0097 (13) | 0.0466 (17) | −0.0051 (13) |
O4 | 0.089 (2) | 0.0406 (18) | 0.097 (2) | −0.0088 (15) | 0.061 (2) | −0.0133 (15) |
O5 | 0.0728 (19) | 0.0429 (17) | 0.091 (2) | 0.0006 (14) | 0.0604 (19) | 0.0001 (14) |
O6 | 0.077 (3) | 0.116 (3) | 0.105 (3) | −0.018 (2) | 0.015 (3) | 0.006 (2) |
O7 | 0.083 (2) | 0.070 (2) | 0.076 (2) | −0.0077 (16) | 0.055 (2) | −0.0078 (16) |
O8 | 0.100 (3) | 0.052 (2) | 0.105 (3) | −0.0020 (17) | 0.066 (2) | −0.0134 (17) |
C1 | 0.041 (2) | 0.041 (2) | 0.064 (3) | 0.0000 (17) | 0.032 (2) | 0.0031 (19) |
C2 | 0.044 (2) | 0.037 (2) | 0.055 (2) | −0.0022 (17) | 0.030 (2) | 0.0033 (17) |
C3 | 0.049 (3) | 0.041 (2) | 0.074 (3) | −0.001 (2) | 0.027 (3) | −0.004 (2) |
C4 | 0.058 (3) | 0.084 (6) | 0.090 (5) | −0.003 (5) | 0.031 (4) | −0.011 (5) |
C5 | 0.052 (4) | 0.090 (11) | 0.100 (9) | −0.006 (8) | 0.024 (6) | −0.015 (9) |
C6 | 0.068 (6) | 0.081 (14) | 0.095 (6) | −0.007 (10) | 0.016 (5) | −0.005 (11) |
O2' | 0.058 (3) | 0.084 (6) | 0.090 (5) | −0.003 (5) | 0.031 (4) | −0.011 (5) |
C5' | 0.068 (6) | 0.081 (14) | 0.095 (6) | −0.007 (10) | 0.016 (5) | −0.005 (11) |
C6' | 0.052 (4) | 0.090 (11) | 0.100 (9) | −0.006 (8) | 0.024 (6) | −0.015 (9) |
C7 | 0.043 (2) | 0.045 (3) | 0.053 (2) | −0.0040 (18) | 0.025 (2) | −0.0023 (19) |
C8 | 0.040 (2) | 0.033 (2) | 0.053 (2) | −0.0022 (16) | 0.025 (2) | −0.0002 (16) |
C9 | 0.041 (2) | 0.037 (2) | 0.057 (2) | −0.0012 (16) | 0.029 (2) | −0.0004 (17) |
C10 | 0.079 (3) | 0.035 (2) | 0.091 (3) | −0.009 (2) | 0.055 (3) | −0.005 (2) |
C11 | 0.075 (3) | 0.070 (3) | 0.071 (3) | −0.005 (2) | 0.048 (3) | −0.004 (2) |
C12 | 0.086 (4) | 0.094 (4) | 0.088 (4) | −0.023 (3) | 0.057 (3) | −0.005 (3) |
C13 | 0.044 (2) | 0.039 (2) | 0.064 (3) | 0.0000 (17) | 0.029 (2) | 0.0050 (18) |
C14 | 0.049 (2) | 0.044 (2) | 0.059 (3) | 0.0016 (18) | 0.033 (2) | 0.0051 (18) |
C15 | 0.054 (3) | 0.049 (3) | 0.081 (4) | −0.005 (2) | 0.038 (3) | −0.007 (2) |
C16 | 0.077 (4) | 0.106 (5) | 0.107 (5) | −0.027 (3) | 0.054 (4) | −0.013 (3) |
C17 | 0.068 (4) | 0.110 (6) | 0.161 (7) | −0.021 (4) | 0.054 (5) | −0.043 (5) |
C18 | 0.069 (5) | 0.127 (6) | 0.123 (7) | −0.007 (4) | −0.002 (5) | −0.019 (5) |
C19 | 0.046 (3) | 0.059 (3) | 0.066 (3) | −0.005 (2) | 0.028 (2) | −0.003 (2) |
C20 | 0.038 (2) | 0.041 (2) | 0.057 (2) | 0.0002 (17) | 0.022 (2) | −0.0021 (18) |
C21 | 0.038 (2) | 0.037 (2) | 0.058 (3) | −0.0007 (16) | 0.022 (2) | −0.0011 (17) |
C22 | 0.063 (3) | 0.039 (2) | 0.080 (3) | −0.0017 (19) | 0.037 (3) | 0.000 (2) |
C23 | 0.103 (4) | 0.090 (4) | 0.082 (3) | −0.009 (3) | 0.065 (3) | −0.013 (3) |
C24 | 0.122 (5) | 0.140 (6) | 0.106 (4) | −0.030 (4) | 0.084 (4) | −0.017 (4) |
N1—C1 | 1.322 (4) | O2'—C6' | 1.41 (3) |
N1—C2 | 1.454 (4) | C5'—C6' | 1.17 (6) |
N1—H1 | 0.8600 | C5'—H5' | 0.9300 |
N2—C1 | 1.365 (4) | C6'—H6' | 0.9300 |
N2—C9 | 1.379 (4) | C7—C8 | 1.462 (5) |
N2—H2 | 0.8600 | C8—C9 | 1.339 (5) |
N3—C13 | 1.343 (5) | C9—C10 | 1.485 (5) |
N3—C14 | 1.454 (4) | C10—H10A | 0.9600 |
N3—H3 | 0.8600 | C10—H10B | 0.9600 |
N4—C21 | 1.373 (4) | C10—H10C | 0.9600 |
N4—C13 | 1.377 (4) | C11—C12 | 1.496 (6) |
N4—H4 | 0.8600 | C11—H11A | 0.9700 |
O1—C1 | 1.241 (4) | C11—H11B | 0.9700 |
O2—C3 | 1.263 (8) | C12—H12A | 0.9600 |
O2—C6 | 1.37 (2) | C12—H12B | 0.9600 |
C4'—C3 | 1.44 (2) | C12—H12C | 0.9600 |
C4'—C5' | 1.50 (5) | C14—C15 | 1.480 (5) |
C4'—H4' | 0.9300 | C14—C20 | 1.518 (5) |
O3—C7 | 1.338 (4) | C14—H14 | 0.9800 |
O3—C11 | 1.430 (4) | C15—C16 | 1.327 (6) |
O4—C7 | 1.211 (4) | C16—C17 | 1.395 (8) |
O5—C13 | 1.224 (4) | C16—H16 | 0.9300 |
O6—C15 | 1.330 (6) | C17—C18 | 1.294 (9) |
O6—C18 | 1.387 (7) | C17—H17 | 0.9300 |
O7—C19 | 1.337 (5) | C18—H18 | 0.9300 |
O7—C23 | 1.449 (5) | C19—C20 | 1.455 (5) |
O8—C19 | 1.201 (4) | C20—C21 | 1.349 (5) |
C2—C3 | 1.484 (5) | C21—C22 | 1.494 (5) |
C2—C8 | 1.509 (5) | C22—H22A | 0.9600 |
C2—H2A | 0.9800 | C22—H22B | 0.9600 |
C3—O2' | 1.262 (10) | C22—H22C | 0.9600 |
C3—C4 | 1.387 (10) | C23—C24 | 1.458 (7) |
C4—C5 | 1.405 (18) | C23—H23A | 0.9700 |
C4—H4A | 0.9300 | C23—H23B | 0.9700 |
C5—C6 | 1.38 (3) | C24—H24A | 0.9600 |
C5—H5 | 0.9300 | C24—H24B | 0.9600 |
C6—H6 | 0.9300 | C24—H24C | 0.9600 |
C1—N1—C2 | 122.9 (3) | H10A—C10—H10B | 109.5 |
C1—N1—H1 | 118.6 | C9—C10—H10C | 109.5 |
C2—N1—H1 | 118.6 | H10A—C10—H10C | 109.5 |
C1—N2—C9 | 123.9 (3) | H10B—C10—H10C | 109.5 |
C1—N2—H2 | 118.0 | O3—C11—C12 | 107.3 (4) |
C9—N2—H2 | 118.0 | O3—C11—H11A | 110.3 |
C13—N3—C14 | 125.2 (3) | C12—C11—H11A | 110.3 |
C13—N3—H3 | 117.4 | O3—C11—H11B | 110.3 |
C14—N3—H3 | 117.4 | C12—C11—H11B | 110.3 |
C21—N4—C13 | 125.1 (3) | H11A—C11—H11B | 108.5 |
C21—N4—H4 | 117.5 | C11—C12—H12A | 109.5 |
C13—N4—H4 | 117.5 | C11—C12—H12B | 109.5 |
C3—O2—C6 | 112.1 (12) | H12A—C12—H12B | 109.5 |
C3—C4'—C5' | 101 (2) | C11—C12—H12C | 109.5 |
C3—C4'—H4' | 129.5 | H12A—C12—H12C | 109.5 |
C5'—C4'—H4' | 129.5 | H12B—C12—H12C | 109.5 |
C7—O3—C11 | 117.6 (3) | O5—C13—N3 | 124.2 (4) |
C15—O6—C18 | 106.5 (5) | O5—C13—N4 | 120.8 (3) |
C19—O7—C23 | 117.0 (4) | N3—C13—N4 | 115.0 (4) |
O1—C1—N1 | 123.9 (4) | N3—C14—C15 | 111.5 (3) |
O1—C1—N2 | 120.4 (3) | N3—C14—C20 | 110.5 (3) |
N1—C1—N2 | 115.6 (3) | C15—C14—C20 | 112.6 (3) |
N1—C2—C3 | 110.7 (3) | N3—C14—H14 | 107.3 |
N1—C2—C8 | 109.4 (3) | C15—C14—H14 | 107.3 |
C3—C2—C8 | 111.0 (3) | C20—C14—H14 | 107.3 |
N1—C2—H2A | 108.5 | C16—C15—O6 | 109.7 (5) |
C3—C2—H2A | 108.5 | C16—C15—C14 | 131.2 (5) |
C8—C2—H2A | 108.5 | O6—C15—C14 | 119.1 (4) |
O2'—C3—O2 | 87.6 (7) | C15—C16—C17 | 107.0 (6) |
O2'—C3—C4 | 44.8 (5) | C15—C16—H16 | 126.5 |
O2—C3—C4 | 110.9 (6) | C17—C16—H16 | 126.5 |
O2'—C3—C4' | 104.6 (10) | C18—C17—C16 | 107.7 (6) |
O2—C3—C4' | 35.0 (6) | C18—C17—H17 | 126.2 |
C4—C3—C4' | 101.9 (9) | C16—C17—H17 | 126.2 |
O2'—C3—C2 | 127.2 (6) | C17—C18—O6 | 109.1 (7) |
O2—C3—C2 | 120.8 (5) | C17—C18—H18 | 125.4 |
C4—C3—C2 | 127.8 (6) | O6—C18—H18 | 125.4 |
C4'—C3—C2 | 124.4 (9) | O8—C19—O7 | 121.5 (4) |
C3—C4—C5 | 103.2 (10) | O8—C19—C20 | 127.3 (4) |
C3—C4—H4A | 128.4 | O7—C19—C20 | 111.3 (4) |
C5—C4—H4A | 128.4 | C21—C20—C19 | 121.7 (4) |
C6—C5—C4 | 109.5 (15) | C21—C20—C14 | 119.5 (3) |
C6—C5—H5 | 125.2 | C19—C20—C14 | 118.8 (3) |
C4—C5—H5 | 125.2 | C20—C21—N4 | 119.7 (3) |
O2—C6—C5 | 104.1 (18) | C20—C21—C22 | 126.7 (3) |
O2—C6—H6 | 127.9 | N4—C21—C22 | 113.5 (3) |
C5—C6—H6 | 127.9 | C21—C22—H22A | 109.5 |
C3—O2'—C6' | 113.1 (15) | C21—C22—H22B | 109.5 |
C6'—C5'—C4' | 110 (3) | H22A—C22—H22B | 109.5 |
C6'—C5'—H5' | 125.2 | C21—C22—H22C | 109.5 |
C4'—C5'—H5' | 125.2 | H22A—C22—H22C | 109.5 |
C5'—C6'—O2' | 108 (3) | H22B—C22—H22C | 109.5 |
C5'—C6'—H6' | 125.9 | O7—C23—C24 | 107.9 (4) |
O2'—C6'—H6' | 125.9 | O7—C23—H23A | 110.1 |
O4—C7—O3 | 121.3 (3) | C24—C23—H23A | 110.1 |
O4—C7—C8 | 127.4 (3) | O7—C23—H23B | 110.1 |
O3—C7—C8 | 111.2 (3) | C24—C23—H23B | 110.1 |
C9—C8—C7 | 122.9 (3) | H23A—C23—H23B | 108.4 |
C9—C8—C2 | 118.2 (3) | C23—C24—H24A | 109.5 |
C7—C8—C2 | 118.9 (3) | C23—C24—H24B | 109.5 |
C8—C9—N2 | 119.1 (3) | H24A—C24—H24B | 109.5 |
C8—C9—C10 | 127.9 (3) | C23—C24—H24C | 109.5 |
N2—C9—C10 | 113.0 (3) | H24A—C24—H24C | 109.5 |
C9—C10—H10A | 109.5 | H24B—C24—H24C | 109.5 |
C9—C10—H10B | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 2.12 | 2.924 (4) | 156 |
N2—H2···O5ii | 0.86 | 2.02 | 2.851 (4) | 162 |
N3—H3···O4iii | 0.86 | 2.38 | 3.077 (4) | 138 |
N4—H4···O1iv | 0.86 | 2.10 | 2.952 (4) | 174 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x−1, y, z; (iii) −x+1, −y+1, −z+1; (iv) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C12H14N2O4 |
Mr | 250.25 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 12.1720 (14), 13.3180 (15), 17.116 (2) |
β (°) | 118.300 (2) |
V (Å3) | 2443.0 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.48 × 0.45 × 0.17 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.952, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11604, 4298, 1943 |
Rint | 0.069 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.071, 0.237, 0.94 |
No. of reflections | 4298 |
No. of parameters | 338 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.23 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 2.12 | 2.924 (4) | 156.0 |
N2—H2···O5ii | 0.86 | 2.02 | 2.851 (4) | 161.6 |
N3—H3···O4iii | 0.86 | 2.38 | 3.077 (4) | 138.0 |
N4—H4···O1iv | 0.86 | 2.10 | 2.952 (4) | 174.3 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x−1, y, z; (iii) −x+1, −y+1, −z+1; (iv) x+1, y, z. |
Biginelli reaction is a well known multicomponent reaction involving a one-pot cyclocondensation of an aldehyde, β-ketoester and urea/thiourea. It is the most important procedure in the synthesis of 3,4-dihydropyrimidin-2-(1H)-ones (Biginelli, 1893). Herewith we report the crystal structure of the title compound, (I), obtained by the three-component reaction of furfuraldehyde, acetoacetate and urea.
In (I) (Fig. 1), the dihydropyrimidinone rings adopt flattened boat conformation. The asymmetric unit contains two independent molecules. In one independent molecule, the furanyl fragment is rotationally disordered in a ratio 0.625 (6):0.375 (6). The bond lengths an angles are normal and comparable to the values observed in similar compounds (Nizam Mohideen et al., 2008; Qing-Fang et al., 2007) The dihedral angles between the furan rings (C3—C6/O2, C15—C18/O6) and the mean planes of the dihydropyrimidinone rings (N1/C1/N2/C9/C8, N3/C13/N4/C21/C20) unit in two independent molecules are 88.79 (4) ° and 86.73 (2)°, respectively, indicating that the furan rings and the dihydropyrimidinone rings are nearly perpendicular.
In the crystal structure, intermolecular N—H···Opyrimidinone hydrogen bonds (Table 1) link the molecules into centrosymmetric tetramers. Tetramers are further associated into ribbons extended in direction [010] via the weak intermolecular N—H···Ocarboxyl hydrogen bonds (Table 1).