Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810024554/ds2035sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810024554/ds2035Isup2.hkl |
CCDC reference: 788344
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.003 Å
- R factor = 0.047
- wR factor = 0.137
- Data-to-parameter ratio = 15.3
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT480_ALERT_4_B Long H...A H-Bond Reported H3 .. CL1 .. 3.24 Ang.
Alert level C PLAT420_ALERT_2_C D-H Without Acceptor N2 - H2A ... ? PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 4 PLAT480_ALERT_4_C Long H...A H-Bond Reported H4 .. O1 .. 2.66 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H2A .. N2 .. 2.77 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H8A .. CL1 .. 3.10 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H8B .. O1 .. 2.71 Ang. PLAT481_ALERT_4_C Long D...A H-Bond Reported C3 .. CL1 .. 3.98 Ang. PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 14
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 8 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 7 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
OPDA (Orthophenelynediamine)(0.108 g, 1 mmol) was dissolved in 20 ml of acetonitrile solution and which was added the solution of 25 ml of methanol containing chloroaceticacid (0.23 g, 1 mmol); this reaction mixture was stirred for 5 min and kept for crystalization at room temperature. Colorless needle-like crystals were formed after 3 days (yield: 0.145 g, 72% based on OPDA).
All H atoms were found on difference maps, with C—H=0.93 Å and included in the final cycles of refinement using a riding model, with Uiso(H)=1.2Ueq(C)
We have reported here the synthesis and structural characterization of a hitherto unknown organic ion pair compound 1, consisting of orthophenylenediammonium cation and chloroacetate anion, that provides a good supramolecular information. The ladder-type one-dimensional chainlike arrangement has been generated because of N—H···O hydrogen bonding interaction in the crystal of compound 1, as shown in Fig. 3.
For hydrogen bonding with chlorine, see: Brammer et al. (2008); Metrangolo et al. (2006, 2009). For ladder-like networks, see: Kinbara, Hashimoto et al. (1996); Kinbara, Kai et al. (1996).
Data collection: SMART (Bruker, 2003); cell refinement: SMAIT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C6H9N2+·C2H2ClO2− | F(000) = 424 |
Mr = 202.64 | Dx = 1.400 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5050 reflections |
a = 11.371 (3) Å | θ = 2.3–26.1° |
b = 4.4852 (11) Å | µ = 0.37 mm−1 |
c = 20.115 (4) Å | T = 298 K |
β = 110.439 (12)° | Needle, colorless |
V = 961.3 (4) Å3 | 0.36 × 0.20 × 0.16 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 1922 independent reflections |
Radiation source: fine-focus sealed tube | 1651 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
phi and ω scans | θmax = 26.2°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | h = −14→14 |
Tmin = 0.879, Tmax = 0.944 | k = −5→5 |
9366 measured reflections | l = −24→24 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0676P)2 + 0.3616P] where P = (Fo2 + 2Fc2)/3 |
1922 reflections | (Δ/σ)max = 0.001 |
126 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C6H9N2+·C2H2ClO2− | V = 961.3 (4) Å3 |
Mr = 202.64 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.371 (3) Å | µ = 0.37 mm−1 |
b = 4.4852 (11) Å | T = 298 K |
c = 20.115 (4) Å | 0.36 × 0.20 × 0.16 mm |
β = 110.439 (12)° |
Bruker SMART CCD area-detector diffractometer | 1922 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | 1651 reflections with I > 2σ(I) |
Tmin = 0.879, Tmax = 0.944 | Rint = 0.025 |
9366 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.33 e Å−3 |
1922 reflections | Δρmin = −0.29 e Å−3 |
126 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.38338 (15) | 0.3513 (3) | 0.89834 (8) | 0.0425 (4) | |
H1A | 0.4696 | 0.3585 | 0.9056 | 0.051* | |
H1B | 0.3687 | 0.1914 | 0.9249 | 0.051* | |
H1C | 0.3625 | 0.5114 | 0.9189 | 0.051* | |
N2 | 0.4570 (2) | −0.0303 (6) | 0.80725 (13) | 0.0819 (7) | |
H2A | 0.4758 | −0.1428 | 0.7809 | 0.098* | |
H2B | 0.5201 | 0.0394 | 0.8428 | 0.098* | |
C1 | 0.1923 (2) | 0.4640 (5) | 0.79778 (11) | 0.0539 (5) | |
H1 | 0.1695 | 0.5954 | 0.8269 | 0.065* | |
C2 | 0.1128 (2) | 0.4187 (6) | 0.72902 (12) | 0.0641 (6) | |
H2 | 0.0360 | 0.5167 | 0.7117 | 0.077* | |
C3 | 0.1485 (3) | 0.2267 (6) | 0.68631 (12) | 0.0655 (7) | |
H3 | 0.0950 | 0.1932 | 0.6400 | 0.079* | |
C4 | 0.2628 (2) | 0.0833 (6) | 0.71141 (12) | 0.0630 (6) | |
H4 | 0.2861 | −0.0422 | 0.6813 | 0.076* | |
C5 | 0.3443 (2) | 0.1229 (5) | 0.78112 (11) | 0.0499 (5) | |
C6 | 0.30556 (18) | 0.3157 (4) | 0.82373 (10) | 0.0422 (4) | |
Cl1 | 0.88856 (6) | −0.20415 (18) | 1.05309 (4) | 0.0787 (3) | |
O1 | 0.63853 (15) | 0.3221 (4) | 0.92605 (9) | 0.0630 (5) | |
O2 | 0.65904 (16) | 0.1467 (3) | 1.03239 (8) | 0.0563 (4) | |
C7 | 0.69161 (19) | 0.1690 (4) | 0.97966 (10) | 0.0453 (5) | |
C8 | 0.8017 (2) | −0.0074 (7) | 0.97533 (13) | 0.0612 (6) | |
H8A | 0.855 (3) | 0.122 (8) | 0.9661 (16) | 0.090 (10)* | |
H8B | 0.767 (3) | −0.161 (9) | 0.938 (2) | 0.118 (13)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0520 (9) | 0.0381 (8) | 0.0424 (8) | −0.0007 (7) | 0.0229 (7) | −0.0024 (6) |
N2 | 0.0660 (13) | 0.0873 (16) | 0.0926 (16) | 0.0075 (12) | 0.0278 (12) | −0.0425 (13) |
C1 | 0.0615 (13) | 0.0508 (12) | 0.0534 (12) | 0.0014 (10) | 0.0250 (10) | 0.0040 (9) |
C2 | 0.0615 (13) | 0.0702 (15) | 0.0563 (13) | 0.0000 (12) | 0.0150 (11) | 0.0151 (12) |
C3 | 0.0715 (15) | 0.0782 (16) | 0.0434 (12) | −0.0223 (13) | 0.0160 (11) | 0.0026 (11) |
C4 | 0.0819 (17) | 0.0650 (14) | 0.0515 (12) | −0.0217 (13) | 0.0351 (12) | −0.0159 (11) |
C5 | 0.0571 (12) | 0.0476 (11) | 0.0528 (11) | −0.0117 (9) | 0.0290 (10) | −0.0088 (9) |
C6 | 0.0515 (11) | 0.0379 (9) | 0.0421 (10) | −0.0073 (8) | 0.0228 (8) | 0.0004 (7) |
Cl1 | 0.0550 (4) | 0.0965 (6) | 0.0777 (5) | 0.0095 (3) | 0.0146 (3) | 0.0200 (4) |
O1 | 0.0545 (9) | 0.0749 (11) | 0.0602 (10) | 0.0028 (8) | 0.0207 (8) | 0.0171 (8) |
O2 | 0.0803 (10) | 0.0421 (8) | 0.0640 (9) | −0.0001 (7) | 0.0472 (8) | −0.0018 (6) |
C7 | 0.0480 (11) | 0.0445 (10) | 0.0471 (11) | −0.0094 (8) | 0.0214 (9) | −0.0046 (8) |
C8 | 0.0584 (13) | 0.0771 (17) | 0.0549 (13) | 0.0100 (12) | 0.0285 (11) | 0.0064 (12) |
N1—C6 | 1.461 (2) | C3—C4 | 1.378 (4) |
N1—H1A | 0.9402 | C3—H3 | 0.9300 |
N1—H1B | 0.9425 | C4—C5 | 1.396 (3) |
N1—H1C | 0.9015 | C4—H4 | 0.9300 |
N2—C5 | 1.385 (3) | C5—C6 | 1.393 (3) |
N2—H2A | 0.8138 | Cl1—C8 | 1.767 (3) |
N2—H2B | 0.8747 | O1—C7 | 1.243 (3) |
C1—C2 | 1.378 (3) | O2—C7 | 1.244 (2) |
C1—C6 | 1.380 (3) | C7—C8 | 1.509 (3) |
C1—H1 | 0.9300 | C8—H8A | 0.90 (3) |
C2—C3 | 1.374 (4) | C8—H8B | 0.99 (4) |
C2—H2 | 0.9300 | ||
C6—N1—H1A | 112.9 | C3—C4—C5 | 121.3 (2) |
C6—N1—H1B | 109.6 | C3—C4—H4 | 119.4 |
H1A—N1—H1B | 108.6 | C5—C4—H4 | 119.4 |
C6—N1—H1C | 113.4 | N2—C5—C6 | 121.6 (2) |
H1A—N1—H1C | 109.2 | N2—C5—C4 | 121.3 (2) |
H1B—N1—H1C | 102.6 | C6—C5—C4 | 117.1 (2) |
C5—N2—H2A | 118.7 | C1—C6—C5 | 121.37 (19) |
C5—N2—H2B | 121.3 | C1—C6—N1 | 119.11 (17) |
H2A—N2—H2B | 115.2 | C5—C6—N1 | 119.45 (18) |
C2—C1—C6 | 120.5 (2) | O1—C7—O2 | 125.8 (2) |
C2—C1—H1 | 119.8 | O1—C7—C8 | 113.63 (18) |
C6—C1—H1 | 119.8 | O2—C7—C8 | 120.5 (2) |
C3—C2—C1 | 119.1 (2) | C7—C8—Cl1 | 115.41 (16) |
C3—C2—H2 | 120.4 | C7—C8—H8A | 107 (2) |
C1—C2—H2 | 120.4 | Cl1—C8—H8A | 107 (2) |
C2—C3—C4 | 120.7 (2) | C7—C8—H8B | 107 (2) |
C2—C3—H3 | 119.7 | Cl1—C8—H8B | 106 (2) |
C4—C3—H3 | 119.7 | H8A—C8—H8B | 114 (3) |
C6—C1—C2—C3 | −0.8 (3) | N2—C5—C6—C1 | −178.9 (2) |
C1—C2—C3—C4 | −0.7 (4) | C4—C5—C6—C1 | −0.9 (3) |
C2—C3—C4—C5 | 1.5 (4) | N2—C5—C6—N1 | −1.8 (3) |
C3—C4—C5—N2 | 177.4 (2) | C4—C5—C6—N1 | 176.18 (18) |
C3—C4—C5—C6 | −0.7 (3) | O1—C7—C8—Cl1 | 174.88 (19) |
C2—C1—C6—C5 | 1.6 (3) | O2—C7—C8—Cl1 | −7.3 (3) |
C2—C1—C6—N1 | −175.42 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···O2i | 0.90 | 1.88 | 2.777 (2) | 173 |
N1—H1B···O2ii | 0.94 | 1.82 | 2.763 (2) | 173 |
N2—H2B···O1 | 0.87 | 2.16 | 3.004 (3) | 163 |
C4—H4···O1iii | 0.93 | 2.66 | 3.527 (3) | 156 |
C3—H3···Cl1iv | 0.93 | 3.24 | 3.985 (3) | 138 |
N2—H2A···N2iii | 0.81 | 2.77 | 3.587 (4) | 179 |
C8—H8A···Cl1v | 0.90 (3) | 3.10 (3) | 3.878 (3) | 146 (3) |
C8—H8B···O1vi | 0.99 (4) | 2.71 (4) | 3.491 (4) | 136 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y, −z+2; (iii) −x+1, y−1/2, −z+3/2; (iv) x−1, −y−1/2, z−1/2; (v) −x+2, −y, −z+2; (vi) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C6H9N2+·C2H2ClO2− |
Mr | 202.64 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 11.371 (3), 4.4852 (11), 20.115 (4) |
β (°) | 110.439 (12) |
V (Å3) | 961.3 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.37 |
Crystal size (mm) | 0.36 × 0.20 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2003) |
Tmin, Tmax | 0.879, 0.944 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9366, 1922, 1651 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.621 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.137, 1.09 |
No. of reflections | 1922 |
No. of parameters | 126 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.29 |
Computer programs: SMART (Bruker, 2003), SMAIT (Bruker, 2003), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···O2i | 0.90 | 1.88 | 2.777 (2) | 172.7 |
N1—H1B···O2ii | 0.94 | 1.82 | 2.763 (2) | 173.2 |
N2—H2B···O1 | 0.87 | 2.16 | 3.004 (3) | 163.0 |
C4—H4···O1iii | 0.93 | 2.66 | 3.527 (3) | 155.9 |
C3—H3···Cl1iv | 0.93 | 3.24 | 3.985 (3) | 138.3 |
N2—H2A···N2iii | 0.81 | 2.77 | 3.587 (4) | 179.1 |
C8—H8A···Cl1v | 0.90 (3) | 3.10 (3) | 3.878 (3) | 146 (3) |
C8—H8B···O1vi | 0.99 (4) | 2.71 (4) | 3.491 (4) | 136 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y, −z+2; (iii) −x+1, y−1/2, −z+3/2; (iv) x−1, −y−1/2, z−1/2; (v) −x+2, −y, −z+2; (vi) x, y−1, z. |
We have reported here the synthesis and structural characterization of a hitherto unknown organic ion pair compound 1, consisting of orthophenylenediammonium cation and chloroacetate anion, that provides a good supramolecular information. The ladder-type one-dimensional chainlike arrangement has been generated because of N—H···O hydrogen bonding interaction in the crystal of compound 1, as shown in Fig. 3.