Acridines are a class of bioactive agents which exhibit high biological stability and the ability to intercalate with DNA; they have a wide range of applications. Pyridine derivatives have a wide range of biological activities. To enhance the properties of acridine and 2-amino-3-methylpyridine as the active pharmaceutical ingredient (API), 4-nitrobenzoic acid was chosen as a coformer. In the present study, a mixture of acridine and 4-nitrobenzoic acid forms the salt acridinium 4-nitrobenzoate, C
13H
10N
+·C
7H
4NO
4− (
I), whereas a mixture of 2-amino-3-methylpyridine and 4-nitrobenzoic acid forms the salt 2-amino-3-methylpyridinium 4-nitrobenzoate, C
6H
9N
2+·C
7H
4NO
4− (
II). In both salts, protonation takes place at the ring N atom. The crystal structure of both salts is predominantly governed by hydrogen-bond interactions. In salt
I, C—H

O and N—H

O interactions form an infinite chain in the crystal, whereas in salt
II, intermolecular N—H

O interactions form an eight-membered
R22(8) ring motif. A theoretical charge–density analysis reveals the charge–density distribution of the inter- and intramolecular interactions of both salts. An
in-silico ADME analysis predicts the druglikeness properties of both salts and the results confirm that both salts are potential drug candidates with good bioavailability scores and there is no violation of the Lipinski rules, which supports the druglikeness properties of both salts. However, although both salts exhibit drug-like properties, salt
I has higher gastrointestinal absorption than salt
II and hence it may be considered a potential drug candidate.
Supporting information
CCDC references: 2298314; 2240641
Acridin-10-ium 4-nitrobenzoate (I)
top
Crystal data top
C13H10N+·C7H4NO4− | Z = 2 |
Mr = 346.33 | F(000) = 360 |
Triclinic, P1 | Dx = 1.395 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.6186 (2) Å | Cell parameters from 4100 reflections |
b = 9.4985 (2) Å | θ = 2.2–28.3° |
c = 11.9173 (3) Å | µ = 0.10 mm−1 |
α = 105.380 (1)° | T = 293 K |
β = 95.005 (1)° | Block, orange |
γ = 93.780 (1)° | 0.76 × 0.48 × 0.19 mm |
V = 824.77 (3) Å3 | |
Data collection top
Bruker D8 QUEST ECO diffractometer | 3338 reflections with I > 2σ(I) |
ω and φ scans | Rint = 0.022 |
Absorption correction: numerical (SADABS; Bruker, 2006) | θmax = 28.0°, θmin = 2.2° |
Tmin = 0.697, Tmax = 0.746 | h = −10→10 |
22030 measured reflections | k = −12→12 |
3965 independent reflections | l = −15→15 |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Secondary atom site location: dual |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: mixed |
wR(F2) = 0.166 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0912P)2 + 0.1205P] where P = (Fo2 + 2Fc2)/3 |
3965 reflections | (Δ/σ)max < 0.001 |
287 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
0 constraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Crystal data, data collection and structure refinement details for salts
I and II are summarized in Table 1. The single-crystal X-ray
diffraction intensities of both salts were collected at 293 K using a
Bruker D8 Quest Eco diffractometer (APEX2, SAINT and SADABS; Bruker, 2006)
fitted with an Mo Kα (λ = 0.71073 Å) radiation
source. The data processing was carried out with APEX4 software.
The structure was solved and refined using the SHELX program
incorporated in the WinGX package (Farrugia, 2012). The displacement
ellipsoid plots at the 50% probability level were drawn using ORTEP-3
(Farrugia, 2012). The hydrogen-bonding interaction diagram are drawn with
Mercury (Macrae et al., 2020). The molecular packing view along
the different axes were plotted using PLATON (Spek, 2020). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O3 | 0.54165 (15) | 0.56623 (12) | 0.21295 (11) | 0.0668 (3) | |
N2 | 0.37822 (14) | 0.77264 (11) | 0.34098 (9) | 0.0459 (3) | |
H2A | 0.423114 | 0.701267 | 0.295365 | 0.055* | |
O4 | 0.78800 (19) | 0.70691 (15) | 0.29466 (15) | 0.1020 (6) | |
C20 | 0.38824 (15) | 0.90582 (13) | 0.32079 (11) | 0.0424 (3) | |
N1 | 1.1229 (2) | 0.16723 (18) | −0.03261 (13) | 0.0718 (4) | |
O2 | 1.2828 (2) | 0.1862 (2) | −0.00949 (14) | 0.1014 (5) | |
C8 | 0.29822 (16) | 0.75062 (14) | 0.43226 (11) | 0.0455 (3) | |
C13 | 0.22403 (15) | 0.86719 (15) | 0.51010 (11) | 0.0457 (3) | |
C15 | 0.31603 (15) | 1.02724 (13) | 0.39465 (11) | 0.0432 (3) | |
C4 | 0.81614 (18) | 0.48421 (13) | 0.15489 (11) | 0.0469 (3) | |
C19 | 0.47551 (19) | 0.92710 (16) | 0.22490 (12) | 0.0521 (3) | |
C1 | 1.01560 (19) | 0.27927 (16) | 0.03319 (12) | 0.0531 (3) | |
C3 | 0.73362 (19) | 0.35560 (15) | 0.07913 (13) | 0.0526 (3) | |
C5 | 1.0001 (2) | 0.50946 (16) | 0.16718 (13) | 0.0535 (3) | |
C7 | 0.7123 (2) | 0.59752 (15) | 0.22730 (13) | 0.0582 (4) | |
C14 | 0.23589 (16) | 1.00515 (15) | 0.48980 (11) | 0.0465 (3) | |
C6 | 1.10170 (19) | 0.40661 (17) | 0.10640 (13) | 0.0553 (3) | |
O1 | 1.0455 (2) | 0.06176 (19) | −0.10658 (16) | 0.1091 (6) | |
C2 | 0.8346 (2) | 0.25109 (17) | 0.01754 (13) | 0.0577 (4) | |
C12 | 0.14156 (19) | 0.8376 (2) | 0.60534 (13) | 0.0587 (4) | |
C16 | 0.33119 (19) | 1.16520 (15) | 0.36816 (14) | 0.0555 (3) | |
C18 | 0.4863 (2) | 1.06030 (18) | 0.20314 (14) | 0.0599 (4) | |
C9 | 0.2888 (2) | 0.60884 (17) | 0.45210 (15) | 0.0594 (4) | |
C11 | 0.1319 (2) | 0.7003 (2) | 0.62023 (16) | 0.0690 (5) | |
C17 | 0.4128 (2) | 1.18062 (17) | 0.27497 (15) | 0.0616 (4) | |
C10 | 0.2070 (2) | 0.5862 (2) | 0.54345 (17) | 0.0688 (4) | |
H12 | 0.100 (2) | 0.9205 (18) | 0.6581 (14) | 0.053 (4)* | |
H16 | 0.285 (2) | 1.245 (2) | 0.4182 (16) | 0.067 (5)* | |
H6 | 1.226 (3) | 0.426 (2) | 0.1128 (17) | 0.080 (6)* | |
H3 | 0.607 (3) | 0.337 (2) | 0.0702 (16) | 0.071 (5)* | |
H14 | 0.192 (2) | 1.0847 (18) | 0.5403 (14) | 0.055 (4)* | |
H19 | 0.527 (2) | 0.8461 (19) | 0.1765 (15) | 0.062 (4)* | |
H2 | 0.776 (3) | 0.167 (2) | −0.0305 (18) | 0.075 (5)* | |
H17 | 0.423 (3) | 1.272 (2) | 0.2600 (18) | 0.088 (6)* | |
H5 | 1.054 (2) | 0.595 (2) | 0.2226 (17) | 0.070 (5)* | |
H18 | 0.549 (3) | 1.074 (2) | 0.1385 (18) | 0.078 (5)* | |
H9 | 0.343 (2) | 0.534 (2) | 0.3967 (15) | 0.063 (5)* | |
H11 | 0.073 (3) | 0.681 (2) | 0.683 (2) | 0.093 (7)* | |
H10 | 0.202 (3) | 0.488 (3) | 0.5555 (19) | 0.092 (6)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O3 | 0.0631 (6) | 0.0509 (6) | 0.0779 (7) | 0.0097 (5) | 0.0155 (5) | −0.0007 (5) |
N2 | 0.0461 (6) | 0.0383 (5) | 0.0486 (6) | 0.0067 (4) | 0.0062 (4) | 0.0027 (4) |
O4 | 0.0806 (9) | 0.0662 (8) | 0.1208 (12) | 0.0135 (6) | −0.0072 (8) | −0.0367 (8) |
C20 | 0.0361 (5) | 0.0422 (6) | 0.0449 (6) | 0.0045 (4) | 0.0014 (4) | 0.0057 (5) |
N1 | 0.0776 (10) | 0.0801 (10) | 0.0628 (8) | 0.0247 (7) | 0.0295 (7) | 0.0173 (7) |
O2 | 0.0743 (9) | 0.1417 (14) | 0.0901 (10) | 0.0447 (9) | 0.0312 (7) | 0.0194 (9) |
C8 | 0.0399 (6) | 0.0438 (6) | 0.0482 (6) | 0.0012 (5) | −0.0006 (5) | 0.0071 (5) |
C13 | 0.0330 (5) | 0.0552 (7) | 0.0459 (6) | 0.0044 (5) | 0.0010 (4) | 0.0096 (5) |
C15 | 0.0341 (5) | 0.0413 (6) | 0.0502 (6) | 0.0070 (4) | 0.0008 (5) | 0.0061 (5) |
C4 | 0.0544 (7) | 0.0405 (6) | 0.0453 (6) | 0.0056 (5) | 0.0033 (5) | 0.0110 (5) |
C19 | 0.0515 (7) | 0.0545 (7) | 0.0491 (7) | 0.0077 (6) | 0.0092 (5) | 0.0105 (6) |
C1 | 0.0586 (8) | 0.0563 (8) | 0.0484 (7) | 0.0128 (6) | 0.0159 (6) | 0.0161 (6) |
C3 | 0.0479 (7) | 0.0476 (7) | 0.0574 (7) | 0.0019 (5) | 0.0074 (6) | 0.0060 (6) |
C5 | 0.0571 (8) | 0.0474 (7) | 0.0524 (7) | −0.0018 (6) | −0.0051 (6) | 0.0122 (6) |
C7 | 0.0681 (9) | 0.0429 (7) | 0.0580 (8) | 0.0101 (6) | 0.0015 (6) | 0.0046 (6) |
C14 | 0.0367 (6) | 0.0488 (7) | 0.0490 (7) | 0.0117 (5) | 0.0046 (5) | 0.0029 (5) |
C6 | 0.0477 (7) | 0.0653 (8) | 0.0566 (8) | 0.0027 (6) | 0.0046 (6) | 0.0240 (7) |
O1 | 0.1137 (12) | 0.0870 (10) | 0.1081 (12) | 0.0211 (9) | 0.0423 (10) | −0.0182 (9) |
C2 | 0.0599 (8) | 0.0483 (7) | 0.0564 (8) | 0.0014 (6) | 0.0090 (6) | −0.0003 (6) |
C12 | 0.0442 (7) | 0.0802 (10) | 0.0519 (7) | 0.0088 (6) | 0.0071 (6) | 0.0169 (7) |
C16 | 0.0504 (7) | 0.0427 (7) | 0.0712 (9) | 0.0117 (5) | 0.0036 (6) | 0.0110 (6) |
C18 | 0.0578 (8) | 0.0665 (9) | 0.0587 (8) | 0.0030 (7) | 0.0077 (6) | 0.0232 (7) |
C9 | 0.0628 (8) | 0.0470 (7) | 0.0656 (9) | 0.0008 (6) | 0.0014 (7) | 0.0132 (6) |
C11 | 0.0548 (8) | 0.0949 (13) | 0.0659 (9) | −0.0008 (8) | 0.0068 (7) | 0.0387 (9) |
C17 | 0.0603 (8) | 0.0517 (8) | 0.0767 (10) | 0.0052 (6) | 0.0018 (7) | 0.0260 (7) |
C10 | 0.0680 (10) | 0.0659 (10) | 0.0759 (10) | −0.0070 (8) | −0.0005 (8) | 0.0310 (8) |
Geometric parameters (Å, º) top
O3—C7 | 1.3002 (19) | C1—C2 | 1.374 (2) |
N2—C20 | 1.3475 (17) | C1—C6 | 1.375 (2) |
N2—C8 | 1.3484 (17) | C3—C2 | 1.389 (2) |
N2—H2A | 0.86 | C3—H3 | 0.96 (2) |
O4—C7 | 1.2061 (18) | C5—C6 | 1.379 (2) |
C20—C19 | 1.4235 (19) | C5—H5 | 0.943 (19) |
C20—C15 | 1.4273 (17) | C14—H14 | 0.934 (17) |
N1—O2 | 1.216 (2) | C6—H6 | 0.95 (2) |
N1—O1 | 1.221 (2) | C2—H2 | 0.91 (2) |
N1—C1 | 1.4833 (19) | C12—C11 | 1.360 (3) |
C8—C9 | 1.426 (2) | C12—H12 | 0.959 (17) |
C8—C13 | 1.4267 (18) | C16—C17 | 1.355 (2) |
C13—C14 | 1.3929 (19) | C16—H16 | 0.941 (19) |
C13—C12 | 1.426 (2) | C18—C17 | 1.415 (2) |
C15—C14 | 1.3903 (19) | C18—H18 | 0.98 (2) |
C15—C16 | 1.4269 (19) | C9—C10 | 1.358 (2) |
C4—C3 | 1.3847 (18) | C9—H9 | 0.973 (18) |
C4—C5 | 1.3944 (19) | C11—C10 | 1.410 (3) |
C4—C7 | 1.5060 (19) | C11—H11 | 0.96 (2) |
C19—C18 | 1.356 (2) | C17—H17 | 0.93 (2) |
C19—H19 | 0.962 (18) | C10—H10 | 0.98 (2) |
| | | |
C20—N2—C8 | 120.39 (11) | O4—C7—O3 | 124.39 (14) |
C20—N2—H2A | 119.8 | O4—C7—C4 | 120.17 (15) |
C8—N2—H2A | 119.8 | O3—C7—C4 | 115.43 (12) |
N2—C20—C19 | 119.44 (11) | C15—C14—C13 | 120.40 (11) |
N2—C20—C15 | 121.55 (11) | C15—C14—H14 | 118.8 (10) |
C19—C20—C15 | 119.01 (12) | C13—C14—H14 | 120.8 (10) |
O2—N1—O1 | 124.04 (16) | C1—C6—C5 | 117.81 (13) |
O2—N1—C1 | 117.87 (16) | C1—C6—H6 | 121.7 (12) |
O1—N1—C1 | 118.09 (16) | C5—C6—H6 | 120.4 (12) |
N2—C8—C9 | 119.56 (12) | C1—C2—C3 | 118.54 (13) |
N2—C8—C13 | 121.10 (12) | C1—C2—H2 | 124.2 (13) |
C9—C8—C13 | 119.34 (13) | C3—C2—H2 | 117.3 (13) |
C14—C13—C12 | 122.91 (13) | C11—C12—C13 | 120.44 (15) |
C14—C13—C8 | 118.46 (12) | C11—C12—H12 | 123.8 (10) |
C12—C13—C8 | 118.63 (13) | C13—C12—H12 | 115.7 (10) |
C14—C15—C16 | 123.29 (12) | C17—C16—C15 | 120.66 (13) |
C14—C15—C20 | 118.08 (12) | C17—C16—H16 | 121.3 (11) |
C16—C15—C20 | 118.62 (12) | C15—C16—H16 | 118.0 (11) |
C3—C4—C5 | 119.82 (12) | C19—C18—C17 | 121.12 (14) |
C3—C4—C7 | 121.61 (12) | C19—C18—H18 | 119.4 (12) |
C5—C4—C7 | 118.55 (12) | C17—C18—H18 | 119.4 (12) |
C18—C19—C20 | 120.18 (13) | C10—C9—C8 | 119.63 (15) |
C18—C19—H19 | 120.7 (11) | C10—C9—H9 | 124.9 (11) |
C20—C19—H19 | 119.1 (11) | C8—C9—H9 | 115.5 (11) |
C2—C1—C6 | 123.12 (13) | C12—C11—C10 | 120.49 (15) |
C2—C1—N1 | 118.36 (14) | C12—C11—H11 | 119.4 (14) |
C6—C1—N1 | 118.52 (14) | C10—C11—H11 | 120.1 (14) |
C4—C3—C2 | 119.86 (13) | C16—C17—C18 | 120.40 (14) |
C4—C3—H3 | 120.5 (11) | C16—C17—H17 | 119.1 (13) |
C2—C3—H3 | 119.6 (11) | C18—C17—H17 | 120.5 (13) |
C6—C5—C4 | 120.83 (13) | C9—C10—C11 | 121.46 (16) |
C6—C5—H5 | 120.4 (12) | C9—C10—H10 | 118.3 (13) |
C4—C5—H5 | 118.6 (11) | C11—C10—H10 | 120.2 (13) |
| | | |
C8—N2—C20—C19 | 179.11 (11) | C3—C4—C7—O3 | −0.4 (2) |
C8—N2—C20—C15 | 0.24 (18) | C5—C4—C7—O3 | −179.01 (12) |
C20—N2—C8—C9 | 179.94 (11) | C16—C15—C14—C13 | 179.41 (11) |
C20—N2—C8—C13 | −0.61 (18) | C20—C15—C14—C13 | −1.30 (18) |
N2—C8—C13—C14 | 0.02 (18) | C12—C13—C14—C15 | −179.23 (11) |
C9—C8—C13—C14 | 179.46 (11) | C8—C13—C14—C15 | 0.96 (18) |
N2—C8—C13—C12 | −179.80 (11) | C2—C1—C6—C5 | 0.5 (2) |
C9—C8—C13—C12 | −0.35 (19) | N1—C1—C6—C5 | −179.82 (12) |
N2—C20—C15—C14 | 0.71 (18) | C4—C5—C6—C1 | 0.3 (2) |
C19—C20—C15—C14 | −178.16 (11) | C6—C1—C2—C3 | −0.5 (2) |
N2—C20—C15—C16 | −179.96 (11) | N1—C1—C2—C3 | 179.89 (13) |
C19—C20—C15—C16 | 1.16 (18) | C4—C3—C2—C1 | −0.5 (2) |
N2—C20—C19—C18 | 179.78 (12) | C14—C13—C12—C11 | 179.22 (12) |
C15—C20—C19—C18 | −1.3 (2) | C8—C13—C12—C11 | −1.0 (2) |
O2—N1—C1—C2 | −172.69 (15) | C14—C15—C16—C17 | 179.15 (13) |
O1—N1—C1—C2 | 7.3 (2) | C20—C15—C16—C17 | −0.1 (2) |
O2—N1—C1—C6 | 7.7 (2) | C20—C19—C18—C17 | 0.4 (2) |
O1—N1—C1—C6 | −172.34 (16) | N2—C8—C9—C10 | −179.46 (13) |
C5—C4—C3—C2 | 1.3 (2) | C13—C8—C9—C10 | 1.1 (2) |
C7—C4—C3—C2 | −177.31 (13) | C13—C12—C11—C10 | 1.6 (2) |
C3—C4—C5—C6 | −1.2 (2) | C15—C16—C17—C18 | −0.8 (2) |
C7—C4—C5—C6 | 177.41 (12) | C19—C18—C17—C16 | 0.6 (2) |
C3—C4—C7—O4 | 178.20 (17) | C8—C9—C10—C11 | −0.5 (3) |
C5—C4—C7—O4 | −0.4 (2) | C12—C11—C10—C9 | −0.8 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O3 | 0.86 | 1.75 | 2.6055 (16) | 172 |
C14—H14···O4i | 0.934 (17) | 2.378 (17) | 3.245 (2) | 154.5 (13) |
C19—H19···O2ii | 0.960 (17) | 2.529 (16) | 3.280 (2) | 135.2 (14) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+2, −y+1, −z. |
2-Amino-3-methylpyridinium 4-nitrobenzoate (II)
top
Crystal data top
C6H9N2+·C7H4NO4− | F(000) = 288 |
Mr = 275.26 | Dx = 1.389 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.2555 (6) Å | Cell parameters from 9892 reflections |
b = 6.7520 (5) Å | θ = 2.5–41.2° |
c = 11.8096 (9) Å | µ = 0.11 mm−1 |
β = 90.573 (3)° | T = 296 K |
V = 658.25 (8) Å3 | Block, green |
Z = 2 | 0.61 × 0.25 × 0.09 mm |
Data collection top
Bruker D8 QUEST ECO diffractometer | 3220 independent reflections |
Radiation source: fine-focus sealed tube | 3103 reflections with I > 2σ(I) |
Flat graphite monochromator | Rint = 0.042 |
Detector resolution: 7.3910 pixels mm-1 | θmax = 28.3°, θmin = 2.5° |
ω and φ scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2019) | k = −8→8 |
Tmin = 0.88, Tmax = 0.99 | l = −15→15 |
3220 measured reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.052 | w = 1/[σ2(Fo2) + (0.054P)2 + 0.2428P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.132 | (Δ/σ)max < 0.001 |
S = 1.14 | Δρmax = 0.20 e Å−3 |
3220 reflections | Δρmin = −0.20 e Å−3 |
183 parameters | Absolute structure: Flack x determined using 1304 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
1 restraint | Absolute structure parameter: 0.2 (4) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refined as a 2-component twin. Crystal data, data collection and structure refinement details for salts
I and II are summarized in Table 1. The single-crystal X-ray
diffraction intensities of both salts were collected at 293 K using a
Bruker D8 Quest Eco diffractometer (APEX2, SAINT and SADABS; Bruker, 2006)
fitted with an Mo Kα (λ = 0.71073 Å) radiation
source. The data processing was carried out with APEX4 software.
The structure was solved and refined using the SHELX program
incorporated in the WinGX package (Farrugia, 2012). The displacement
ellipsoid plots at the 50% probability level were drawn using ORTEP-3
(Farrugia, 2012). The hydrogen-bonding interaction diagram are drawn with
Mercury (Macrae et al., 2020). The molecular packing view along
the different axes were plotted using PLATON (Spek, 2020). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 1.0396 (5) | −0.2408 (5) | 0.6185 (3) | 0.0832 (12) | |
O2 | 0.6228 (4) | 0.6303 (4) | 0.6901 (2) | 0.0533 (7) | |
O3 | 1.0303 (6) | −0.2949 (6) | 0.7960 (4) | 0.0892 (13) | |
O4 | 0.6033 (4) | 0.5723 (4) | 0.8745 (2) | 0.0501 (7) | |
N1 | 0.9984 (4) | −0.1964 (5) | 0.7132 (3) | 0.0541 (8) | |
N2 | 0.4405 (4) | 0.9520 (4) | 0.6964 (2) | 0.0387 (6) | |
H2 | 0.497074 | 0.845216 | 0.699183 | 0.046000* | |
N3 | 0.4237 (4) | 0.9352 (5) | 0.8900 (2) | 0.0461 (7) | |
H3A | 0.478651 | 0.827091 | 0.888073 | 0.055000* | |
H3B | 0.391797 | 0.981768 | 0.953816 | 0.055000* | |
C1 | 0.9075 (4) | −0.0095 (5) | 0.7295 (3) | 0.0413 (8) | |
C2 | 0.8807 (5) | 0.1111 (5) | 0.6373 (3) | 0.0433 (8) | |
H2A | 0.916881 | 0.075756 | 0.565794 | 0.052000* | |
C3 | 0.7984 (5) | 0.2861 (5) | 0.6544 (3) | 0.0427 (8) | |
H3 | 0.779833 | 0.370723 | 0.593538 | 0.051000* | |
C4 | 0.7426 (4) | 0.3382 (5) | 0.7612 (3) | 0.0354 (6) | |
C5 | 0.7730 (5) | 0.2121 (5) | 0.8521 (3) | 0.0466 (9) | |
H5 | 0.737050 | 0.246140 | 0.923878 | 0.056000* | |
C6 | 0.8566 (5) | 0.0362 (6) | 0.8365 (3) | 0.0499 (9) | |
H6 | 0.877530 | −0.048478 | 0.897027 | 0.060000* | |
C7 | 0.6486 (4) | 0.5290 (5) | 0.7776 (3) | 0.0377 (7) | |
C8 | 0.3879 (4) | 1.0307 (5) | 0.7941 (3) | 0.0340 (6) | |
C9 | 0.4080 (5) | 1.0340 (6) | 0.5937 (3) | 0.0451 (8) | |
H9 | 0.447081 | 0.974297 | 0.528509 | 0.054000* | |
C10 | 0.3192 (5) | 1.2018 (6) | 0.5854 (3) | 0.0455 (8) | |
H10 | 0.294489 | 1.257178 | 0.515248 | 0.055000* | |
C11 | 0.2658 (5) | 1.2894 (6) | 0.6852 (3) | 0.0442 (8) | |
H11 | 0.207084 | 1.406720 | 0.680712 | 0.053000* | |
C12 | 0.2967 (4) | 1.2091 (5) | 0.7894 (3) | 0.0374 (7) | |
C13 | 0.2384 (5) | 1.3027 (6) | 0.8969 (3) | 0.0513 (10) | |
H13A | 0.158245 | 1.401184 | 0.879204 | 0.077000* | |
H13B | 0.328065 | 1.363709 | 0.935807 | 0.077000* | |
H13C | 0.191738 | 1.202947 | 0.944456 | 0.077000* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.115 (3) | 0.057 (2) | 0.078 (2) | 0.033 (2) | 0.031 (2) | −0.0108 (18) |
O2 | 0.087 (2) | 0.0374 (13) | 0.0362 (12) | 0.0226 (13) | 0.0090 (13) | 0.0051 (10) |
O3 | 0.119 (3) | 0.062 (2) | 0.087 (2) | 0.048 (2) | 0.006 (2) | 0.011 (2) |
O4 | 0.0782 (18) | 0.0395 (13) | 0.0328 (11) | 0.0149 (13) | 0.0069 (12) | 0.0009 (10) |
N1 | 0.060 (2) | 0.0342 (16) | 0.068 (2) | 0.0113 (15) | 0.0077 (17) | 0.0005 (15) |
N2 | 0.0487 (15) | 0.0337 (13) | 0.0339 (13) | 0.0074 (12) | 0.0010 (12) | −0.0036 (11) |
N3 | 0.066 (2) | 0.0406 (15) | 0.0323 (13) | 0.0127 (14) | 0.0026 (13) | −0.0005 (12) |
C1 | 0.0420 (17) | 0.0295 (16) | 0.052 (2) | 0.0027 (13) | 0.0049 (14) | 0.0000 (14) |
C2 | 0.052 (2) | 0.0429 (19) | 0.0348 (15) | 0.0040 (16) | 0.0056 (14) | −0.0040 (14) |
C3 | 0.057 (2) | 0.0379 (17) | 0.0329 (16) | 0.0055 (16) | 0.0032 (14) | 0.0062 (14) |
C4 | 0.0444 (17) | 0.0274 (14) | 0.0345 (15) | 0.0014 (12) | 0.0020 (12) | 0.0004 (12) |
C5 | 0.067 (2) | 0.0387 (18) | 0.0348 (16) | 0.0104 (17) | 0.0105 (16) | 0.0063 (15) |
C6 | 0.069 (2) | 0.0398 (19) | 0.0413 (18) | 0.0139 (18) | 0.0108 (16) | 0.0149 (16) |
C7 | 0.0510 (18) | 0.0273 (15) | 0.0347 (15) | 0.0029 (14) | 0.0029 (13) | 0.0013 (12) |
C8 | 0.0401 (15) | 0.0291 (14) | 0.0328 (14) | −0.0006 (13) | 0.0002 (12) | −0.0031 (12) |
C9 | 0.055 (2) | 0.051 (2) | 0.0287 (14) | 0.0001 (18) | −0.0006 (13) | −0.0031 (14) |
C10 | 0.059 (2) | 0.0458 (18) | 0.0314 (15) | 0.0040 (17) | −0.0040 (14) | 0.0052 (14) |
C11 | 0.0475 (19) | 0.0390 (17) | 0.0460 (19) | 0.0127 (16) | −0.0056 (15) | 0.0006 (15) |
C12 | 0.0417 (17) | 0.0372 (16) | 0.0333 (15) | 0.0027 (14) | −0.0015 (12) | −0.0055 (13) |
C13 | 0.066 (2) | 0.048 (2) | 0.0407 (18) | 0.0200 (19) | 0.0025 (17) | −0.0085 (16) |
Geometric parameters (Å, º) top
O1—N1 | 1.210 (5) | C2—C3 | 1.378 (5) |
O2—C7 | 1.255 (4) | C3—C4 | 1.392 (4) |
O3—N1 | 1.209 (5) | C4—C5 | 1.391 (5) |
O4—C7 | 1.242 (4) | C4—C7 | 1.518 (4) |
N1—C1 | 1.482 (4) | C5—C6 | 1.387 (5) |
N2—C8 | 1.346 (4) | C8—C12 | 1.421 (4) |
N2—C9 | 1.358 (4) | C9—C10 | 1.352 (5) |
N3—C8 | 1.334 (4) | C10—C11 | 1.394 (5) |
C1—C6 | 1.371 (5) | C11—C12 | 1.366 (5) |
C1—C2 | 1.375 (5) | C12—C13 | 1.501 (5) |
| | | |
O3—N1—O1 | 123.4 (4) | C1—C6—C5 | 118.2 (3) |
O3—N1—C1 | 118.0 (4) | O4—C7—O2 | 125.4 (3) |
O1—N1—C1 | 118.5 (3) | O4—C7—C4 | 118.5 (3) |
C8—N2—C9 | 122.8 (3) | O2—C7—C4 | 116.1 (3) |
C6—C1—C2 | 123.2 (3) | N3—C8—N2 | 117.8 (3) |
C6—C1—N1 | 118.1 (3) | N3—C8—C12 | 123.7 (3) |
C2—C1—N1 | 118.6 (3) | N2—C8—C12 | 118.5 (3) |
C1—C2—C3 | 117.8 (3) | C10—C9—N2 | 120.5 (3) |
C2—C3—C4 | 121.1 (3) | C9—C10—C11 | 118.0 (3) |
C5—C4—C3 | 119.1 (3) | C12—C11—C10 | 122.4 (3) |
C5—C4—C7 | 120.6 (3) | C11—C12—C8 | 117.7 (3) |
C3—C4—C7 | 120.3 (3) | C11—C12—C13 | 122.4 (3) |
C6—C5—C4 | 120.5 (3) | C8—C12—C13 | 119.9 (3) |
| | | |
O3—N1—C1—C6 | −3.6 (6) | C3—C4—C7—O4 | −178.7 (4) |
O1—N1—C1—C6 | 177.8 (4) | C5—C4—C7—O2 | −177.9 (4) |
O3—N1—C1—C2 | 175.3 (4) | C3—C4—C7—O2 | 1.4 (5) |
O1—N1—C1—C2 | −3.3 (6) | C9—N2—C8—N3 | 178.4 (3) |
C6—C1—C2—C3 | 0.0 (6) | C9—N2—C8—C12 | −1.1 (5) |
N1—C1—C2—C3 | −178.9 (3) | C8—N2—C9—C10 | −0.1 (6) |
C1—C2—C3—C4 | −0.7 (6) | N2—C9—C10—C11 | 1.4 (6) |
C2—C3—C4—C5 | 1.0 (6) | C9—C10—C11—C12 | −1.7 (6) |
C2—C3—C4—C7 | −178.4 (3) | C10—C11—C12—C8 | 0.5 (5) |
C3—C4—C5—C6 | −0.5 (6) | C10—C11—C12—C13 | −179.6 (4) |
C7—C4—C5—C6 | 178.9 (4) | N3—C8—C12—C11 | −178.7 (3) |
C2—C1—C6—C5 | 0.5 (6) | N2—C8—C12—C11 | 0.8 (5) |
N1—C1—C6—C5 | 179.3 (4) | N3—C8—C12—C13 | 1.5 (5) |
C4—C5—C6—C1 | −0.2 (6) | N2—C8—C12—C13 | −179.0 (3) |
C5—C4—C7—O4 | 1.9 (5) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O2 | 0.86 | 1.79 | 2.6444 (4) | 174 |
N3—H3A···O4 | 0.86 | 2.01 | 2.871 (4) | 177 |
N3—H3B···O4i | 0.86 | 2.12 | 2.942 (3) | 160 |
C2—H2A···O1ii | 0.93 | 2.53 | 3.256 (5) | 135 |
C13—H13A···O3iii | 0.96 | 2.50 | 3.422 (6) | 160 |
Symmetry codes: (i) −x+1, y+1/2, −z+2; (ii) −x+2, y+1/2, −z+1; (iii) x−1, y+2, z. |
QTAIM analysis topD—H···A | H···A | ρ (rcp) (e Å-3) | ∇2ρ (rcp) (e Å-5) | G(r) (a.u.) | V(r) (a.u.) | H(r) |
Salt I | | | | | | |
N2—H2A···O3 | 1.7500 | 0.535 | 3.969 | 0.1773 | -0.3134 | -0.1361 |
C14—H14···O4i | 2.371 | 0.081 | 1.00 | 0.0133 | -0.0162 | -0.003 |
C19—H19···O2ii | 2.526 | 0.064 | 0.752 | 0.010 | -0.0120 | -0.0020 |
| | | | | | |
Salt II | | | | | | |
N2—H2···O2 | 1.7900 | 0.341 | 3.191 | 0.0927 | -0.1524 | 0.0597 |
N3—H3A···O4 | 2.0100 | 0.181 | 2.155 | 0.0395 | -0.0567 | -0.0172 |
N3—H3B···O4iii | 2.1200 | 0.17 | 2.489 | 0.0393 | -0.0528 | -0.0135 |
C2—H2A···O1iv | 2.5300 | 0.057 | 0.782 | 0.0089 | -0.0097 | -0.0008 |
C13—H13A···O3v | 2.5000 | 0.053 | 0.67 | 0.0077 | -0.0085 | -0.0008 |
Results of in silico ADME prediction topFormula | C20H14N2O4 | C13H13N3O4 |
Mr | 346.34 | 275.26 |
No. of heavy atoms | 26 | 20 |
No. of aromatic heavy atoms | 12 | 6 |
Fraction C(sp3) | 0.05 | 0.15 |
No. of rotatable bonds | 2 | 2 |
No. of hydrogen-bond acceptors | 4 | 5 |
No. of hydrogen-bond donors | 1 | 2 |
TPSA | 74.92 | 100.94 |
GI absorption | High | High |
BBB permeant | Yes | No |
Bioavailability score | 0.85 | 0.55 |
log Kp (cm s-1) (skin permeation) | -5.25 | -8.52 |
Lipinski no. of violations | 0 | 0 |