Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810023251/ez2215sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810023251/ez2215Isup2.hkl |
CCDC reference: 786776
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean (C-C) = 0.004 Å
- R factor = 0.042
- wR factor = 0.127
- Data-to-parameter ratio = 8.9
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 3
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 24.99 From the CIF: _reflns_number_total 1452 Count of symmetry unique reflns 1453 Completeness (_total/calc) 99.93% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The title compound was prepared according to a modified literature procedure published by Adkins & Billica (1948). 2-(1-Adamantyl)-2-benzyl-1,3-dithiane (0.33 mmol, 114 mg) was dissolved in 5 ml of dioxane and a large excess of Raney nickel catalyst was added to this solution. The reaction mixture was stirred and refluxed under Ar atmosphere. Further portions of Raney nickel were added until the starting material was completely consumed (monitored by GC). Subsequently, the Raney nickel was filtered off, the filtrate was diluted with water and extracted with diethyl ether. The combined organic layers were washed twice with brine and dried over Na2SO4. The required product was obtained after evaporation of solvent in vacuum as a colorless crystalline powder (72 mg, 91%, mp 318–324 K). The crystal used for data collection was grown by spontaneous evaporation from deuterochloroform at room temperature.
Hydrogen atoms were positioned geometrically and refined as riding using standard SHELXTL constraints, with their Uiso set to either 1.2Ueq of their parent atoms. In the absence of significant anomalous scattering, Friedel pairs were merged.
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell refinement: CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C18H24 | Dx = 1.149 Mg m−3 |
Mr = 240.37 | Melting point: 321 K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 5446 reflections |
a = 6.4844 (5) Å | θ = 3.1–27.2° |
b = 7.5109 (5) Å | µ = 0.06 mm−1 |
c = 28.5305 (19) Å | T = 120 K |
V = 1389.55 (17) Å3 | Block, colourless |
Z = 4 | 0.40 × 0.20 × 0.20 mm |
F(000) = 528 |
Kuma KM-4-CCD diffractometer | 1452 independent reflections |
Radiation source: fine-focus sealed tube | 1277 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
Detector resolution: 0.06 mm pixels mm-1 | θmax = 25.0°, θmin = 3.1° |
ω scan | h = −5→7 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | k = −8→8 |
Tmin = 0.924, Tmax = 1.000 | l = −33→33 |
11994 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.30 | w = 1/[σ2(Fo2) + (0.0705P)2 + 0.0787P] where P = (Fo2 + 2Fc2)/3 |
1452 reflections | (Δ/σ)max < 0.001 |
163 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.15 e Å−3 |
C18H24 | V = 1389.55 (17) Å3 |
Mr = 240.37 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.4844 (5) Å | µ = 0.06 mm−1 |
b = 7.5109 (5) Å | T = 120 K |
c = 28.5305 (19) Å | 0.40 × 0.20 × 0.20 mm |
Kuma KM-4-CCD diffractometer | 1452 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | 1277 reflections with I > 2σ(I) |
Tmin = 0.924, Tmax = 1.000 | Rint = 0.043 |
11994 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.30 | Δρmax = 0.24 e Å−3 |
1452 reflections | Δρmin = −0.15 e Å−3 |
163 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8116 (4) | 0.4428 (3) | 0.14870 (8) | 0.0172 (6) | |
C2 | 0.6166 (4) | 0.4772 (3) | 0.17845 (9) | 0.0207 (6) | |
H2A | 0.6402 | 0.5812 | 0.1991 | 0.025* | |
H2B | 0.4993 | 0.5052 | 0.1575 | 0.025* | |
C3 | 0.5633 (4) | 0.3148 (3) | 0.20840 (8) | 0.0206 (6) | |
H3 | 0.4366 | 0.3400 | 0.2272 | 0.025* | |
C4 | 0.5236 (4) | 0.1543 (3) | 0.17589 (9) | 0.0232 (6) | |
H4A | 0.4887 | 0.0482 | 0.1949 | 0.028* | |
H4B | 0.4059 | 0.1803 | 0.1549 | 0.028* | |
C5 | 0.7167 (4) | 0.1176 (3) | 0.14680 (8) | 0.0212 (6) | |
H5 | 0.6913 | 0.0137 | 0.1257 | 0.025* | |
C6 | 0.8974 (4) | 0.0749 (3) | 0.17999 (9) | 0.0222 (6) | |
H6A | 0.8640 | −0.0316 | 0.1990 | 0.027* | |
H6B | 1.0230 | 0.0490 | 0.1615 | 0.027* | |
C7 | 0.9363 (4) | 0.2344 (3) | 0.21230 (8) | 0.0195 (6) | |
H7 | 1.0545 | 0.2072 | 0.2337 | 0.023* | |
C8 | 0.9892 (4) | 0.3977 (3) | 0.18208 (8) | 0.0182 (6) | |
H8A | 1.0171 | 0.5010 | 0.2027 | 0.022* | |
H8B | 1.1154 | 0.3731 | 0.1637 | 0.022* | |
C9 | 0.7437 (4) | 0.2729 (4) | 0.24146 (8) | 0.0217 (6) | |
H9A | 0.7693 | 0.3756 | 0.2624 | 0.026* | |
H9B | 0.7097 | 0.1683 | 0.2611 | 0.026* | |
C10 | 0.7703 (4) | 0.2808 (3) | 0.11744 (9) | 0.0208 (6) | |
H10A | 0.6548 | 0.3076 | 0.0959 | 0.025* | |
H10B | 0.8941 | 0.2554 | 0.0983 | 0.025* | |
C11 | 0.8577 (4) | 0.6112 (3) | 0.12008 (8) | 0.0219 (6) | |
H11A | 0.7359 | 0.6377 | 0.1004 | 0.026* | |
H11B | 0.8750 | 0.7118 | 0.1421 | 0.026* | |
C12 | 1.0478 (5) | 0.6040 (4) | 0.08826 (9) | 0.0283 (7) | |
H12A | 1.1701 | 0.5727 | 0.1073 | 0.034* | |
H12B | 1.0284 | 0.5092 | 0.0646 | 0.034* | |
C13 | 1.0866 (5) | 0.7775 (4) | 0.06375 (8) | 0.0234 (6) | |
C14 | 1.2499 (5) | 0.8876 (4) | 0.07581 (8) | 0.0302 (7) | |
H14 | 1.3389 | 0.8539 | 0.1007 | 0.036* | |
C15 | 1.2855 (5) | 1.0453 (4) | 0.05228 (9) | 0.0349 (8) | |
H15 | 1.3969 | 1.1197 | 0.0615 | 0.042* | |
C16 | 1.1596 (5) | 1.0957 (4) | 0.01530 (9) | 0.0317 (7) | |
H16 | 1.1860 | 1.2027 | −0.0014 | 0.038* | |
C17 | 0.9961 (5) | 0.9891 (4) | 0.00311 (9) | 0.0285 (7) | |
H17 | 0.9071 | 1.0238 | −0.0217 | 0.034* | |
C18 | 0.9604 (5) | 0.8312 (4) | 0.02684 (9) | 0.0275 (7) | |
H18 | 0.8477 | 0.7581 | 0.0178 | 0.033* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0173 (14) | 0.0180 (13) | 0.0163 (11) | −0.0001 (11) | 0.0018 (10) | −0.0003 (10) |
C2 | 0.0141 (13) | 0.0236 (14) | 0.0244 (13) | 0.0037 (11) | 0.0005 (12) | −0.0009 (11) |
C3 | 0.0150 (14) | 0.0257 (14) | 0.0212 (12) | 0.0006 (11) | 0.0051 (11) | 0.0004 (11) |
C4 | 0.0187 (15) | 0.0262 (14) | 0.0247 (12) | −0.0028 (12) | −0.0013 (12) | 0.0051 (11) |
C5 | 0.0238 (15) | 0.0188 (13) | 0.0210 (12) | −0.0015 (12) | −0.0036 (11) | −0.0037 (11) |
C6 | 0.0196 (14) | 0.0202 (13) | 0.0269 (13) | 0.0012 (12) | 0.0022 (12) | 0.0028 (11) |
C7 | 0.0157 (14) | 0.0246 (14) | 0.0184 (12) | 0.0004 (12) | −0.0023 (11) | 0.0037 (11) |
C8 | 0.0155 (13) | 0.0214 (13) | 0.0177 (11) | −0.0004 (11) | 0.0010 (11) | −0.0020 (11) |
C9 | 0.0196 (15) | 0.0278 (15) | 0.0176 (11) | −0.0020 (13) | 0.0016 (11) | 0.0017 (10) |
C10 | 0.0199 (15) | 0.0237 (14) | 0.0187 (11) | 0.0010 (12) | −0.0007 (11) | −0.0012 (10) |
C11 | 0.0216 (14) | 0.0217 (14) | 0.0223 (12) | 0.0016 (12) | −0.0002 (12) | 0.0007 (11) |
C12 | 0.0275 (16) | 0.0289 (15) | 0.0284 (13) | 0.0014 (14) | 0.0050 (13) | 0.0058 (12) |
C13 | 0.0252 (16) | 0.0248 (14) | 0.0201 (12) | −0.0005 (12) | 0.0029 (11) | 0.0015 (11) |
C14 | 0.0302 (16) | 0.0415 (18) | 0.0190 (12) | −0.0061 (15) | −0.0020 (12) | 0.0030 (12) |
C15 | 0.040 (2) | 0.0352 (17) | 0.0291 (14) | −0.0181 (15) | −0.0039 (14) | −0.0028 (13) |
C16 | 0.0468 (19) | 0.0250 (14) | 0.0235 (13) | −0.0047 (15) | 0.0047 (13) | 0.0029 (12) |
C17 | 0.0307 (17) | 0.0317 (15) | 0.0232 (13) | 0.0030 (14) | −0.0002 (14) | 0.0046 (11) |
C18 | 0.0237 (16) | 0.0283 (15) | 0.0306 (14) | −0.0033 (13) | −0.0027 (12) | 0.0000 (12) |
C1—C10 | 1.532 (3) | C8—H8B | 0.9900 |
C1—C8 | 1.532 (3) | C9—H9A | 0.9900 |
C1—C11 | 1.535 (3) | C9—H9B | 0.9900 |
C1—C2 | 1.544 (3) | C10—H10A | 0.9900 |
C2—C3 | 1.529 (3) | C10—H10B | 0.9900 |
C2—H2A | 0.9900 | C11—C12 | 1.532 (4) |
C2—H2B | 0.9900 | C11—H11A | 0.9900 |
C3—C9 | 1.535 (4) | C11—H11B | 0.9900 |
C3—C4 | 1.542 (3) | C12—C13 | 1.500 (4) |
C3—H3 | 1.0000 | C12—H12A | 0.9900 |
C4—C5 | 1.527 (4) | C12—H12B | 0.9900 |
C4—H4A | 0.9900 | C13—C14 | 1.387 (4) |
C4—H4B | 0.9900 | C13—C18 | 1.393 (4) |
C5—C10 | 1.525 (3) | C14—C15 | 1.381 (4) |
C5—C6 | 1.540 (4) | C14—H14 | 0.9500 |
C5—H5 | 1.0000 | C15—C16 | 1.387 (4) |
C6—C7 | 1.533 (3) | C15—H15 | 0.9500 |
C6—H6A | 0.9900 | C16—C17 | 1.373 (4) |
C6—H6B | 0.9900 | C16—H16 | 0.9500 |
C7—C9 | 1.528 (4) | C17—C18 | 1.385 (4) |
C7—C8 | 1.538 (3) | C17—H17 | 0.9500 |
C7—H7 | 1.0000 | C18—H18 | 0.9500 |
C8—H8A | 0.9900 | ||
C10—C1—C8 | 108.5 (2) | C1—C8—H8B | 109.5 |
C10—C1—C11 | 112.24 (18) | C7—C8—H8B | 109.5 |
C8—C1—C11 | 111.5 (2) | H8A—C8—H8B | 108.0 |
C10—C1—C2 | 108.1 (2) | C7—C9—C3 | 109.08 (18) |
C8—C1—C2 | 108.09 (18) | C7—C9—H9A | 109.9 |
C11—C1—C2 | 108.3 (2) | C3—C9—H9A | 109.9 |
C3—C2—C1 | 111.0 (2) | C7—C9—H9B | 109.9 |
C3—C2—H2A | 109.4 | C3—C9—H9B | 109.9 |
C1—C2—H2A | 109.4 | H9A—C9—H9B | 108.3 |
C3—C2—H2B | 109.4 | C5—C10—C1 | 110.99 (19) |
C1—C2—H2B | 109.4 | C5—C10—H10A | 109.4 |
H2A—C2—H2B | 108.0 | C1—C10—H10A | 109.4 |
C2—C3—C9 | 109.5 (2) | C5—C10—H10B | 109.4 |
C2—C3—C4 | 108.97 (18) | C1—C10—H10B | 109.4 |
C9—C3—C4 | 109.7 (2) | H10A—C10—H10B | 108.0 |
C2—C3—H3 | 109.6 | C12—C11—C1 | 116.3 (2) |
C9—C3—H3 | 109.6 | C12—C11—H11A | 108.2 |
C4—C3—H3 | 109.6 | C1—C11—H11A | 108.2 |
C5—C4—C3 | 109.3 (2) | C12—C11—H11B | 108.2 |
C5—C4—H4A | 109.8 | C1—C11—H11B | 108.2 |
C3—C4—H4A | 109.8 | H11A—C11—H11B | 107.4 |
C5—C4—H4B | 109.8 | C13—C12—C11 | 112.4 (2) |
C3—C4—H4B | 109.8 | C13—C12—H12A | 109.1 |
H4A—C4—H4B | 108.3 | C11—C12—H12A | 109.1 |
C10—C5—C4 | 109.9 (2) | C13—C12—H12B | 109.1 |
C10—C5—C6 | 109.4 (2) | C11—C12—H12B | 109.1 |
C4—C5—C6 | 109.09 (18) | H12A—C12—H12B | 107.9 |
C10—C5—H5 | 109.5 | C14—C13—C18 | 117.6 (2) |
C4—C5—H5 | 109.5 | C14—C13—C12 | 122.0 (2) |
C6—C5—H5 | 109.5 | C18—C13—C12 | 120.4 (3) |
C7—C6—C5 | 109.4 (2) | C15—C14—C13 | 121.2 (3) |
C7—C6—H6A | 109.8 | C15—C14—H14 | 119.4 |
C5—C6—H6A | 109.8 | C13—C14—H14 | 119.4 |
C7—C6—H6B | 109.8 | C14—C15—C16 | 120.4 (3) |
C5—C6—H6B | 109.8 | C14—C15—H15 | 119.8 |
H6A—C6—H6B | 108.2 | C16—C15—H15 | 119.8 |
C9—C7—C6 | 109.9 (2) | C17—C16—C15 | 119.2 (3) |
C9—C7—C8 | 109.7 (2) | C17—C16—H16 | 120.4 |
C6—C7—C8 | 108.84 (18) | C15—C16—H16 | 120.4 |
C9—C7—H7 | 109.5 | C16—C17—C18 | 120.3 (3) |
C6—C7—H7 | 109.5 | C16—C17—H17 | 119.9 |
C8—C7—H7 | 109.5 | C18—C17—H17 | 119.9 |
C1—C8—C7 | 110.9 (2) | C17—C18—C13 | 121.3 (3) |
C1—C8—H8A | 109.5 | C17—C18—H18 | 119.4 |
C7—C8—H8A | 109.5 | C13—C18—H18 | 119.4 |
Cg1 is the centroid of the C13–C18 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C18—H18···Cg1i | 0.95 | 2.64 | 3.529 (3) | 156 |
Symmetry code: (i) x−1/2, −y+3/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C18H24 |
Mr | 240.37 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 120 |
a, b, c (Å) | 6.4844 (5), 7.5109 (5), 28.5305 (19) |
V (Å3) | 1389.55 (17) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.06 |
Crystal size (mm) | 0.40 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Kuma KM-4-CCD diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.924, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11994, 1452, 1277 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.127, 1.30 |
No. of reflections | 1452 |
No. of parameters | 163 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.15 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2009), CrysAlis RED (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008).
Cg1 is the centroid of the C13–C18 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C18—H18···Cg1i | 0.95 | 2.64 | 3.529 (3) | 156.3 |
Symmetry code: (i) x−1/2, −y+3/2, −z. |
Adamantane is a molecule with an elegant structure and unique properties. The addition of the highly lipophilic adamantane cage to a known biologically active compound can significantly improve the pharmacokinetic profile of the resulting molecule, e.g. its oral bioavailability (van der Schyf et al. 2009). Moreover, the relatively stable host–guest interactions of the adamantane scaffold with β-cyclodextrin might increase the solubility of non-polar substances in polar media (van Bommel et al. 2001). Both these characteristics have an important role in drug design. This structure represents one of the few low-molecular-weight molecules bearing an adamantane moiety that has no polar function group. Therefore, this compound may be used as a standard molecule for investigations of non-polar interactions.
The asymmetric unit of the title compound consists of a single molecule (Fig. 1). The benzene ring is nearly planar with a maximum deviation from the best plane being 0.007 (2) Å for C16. The torsion angles describing mutual alignment of the 1-adamantyl and phenyl substituents C18—C13—C12—C11, C13—C12—C11—C1 and C12—C11—C1—C2 are -73.4 (2), -177.10 (16) and 179.59 (16)°, respectively. In the crystal packing, the molecules are arranged into chains parallel to the a-axis linked by weak C—H···π interactions (Fig. 2, Table 1).