Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810014017/fb2190sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810014017/fb2190Isup2.hkl |
CCDC reference: 778019
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.005 Å
- R factor = 0.045
- wR factor = 0.109
- Data-to-parameter ratio = 7.3
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.98 PLAT089_ALERT_3_C Poor Data / Parameter Ratio (Zmax .LT. 18) ..... 7.34 PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.74 PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang .. 5 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 23 PLAT731_ALERT_1_C Bond Calc 0.88(3), Rep 0.875(11) ...... 2.73 su-Ra O4 -H4 1.555 1.555 PLAT731_ALERT_1_C Bond Calc 0.86(4), Rep 0.855(11) ...... 3.64 su-Ra O7 -H7 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.86(4), Rep 0.855(11) ...... 3.64 su-Ra O7 -H7 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.88(3), Rep 0.875(11) ...... 2.73 su-Ra O4 -H4 1.555 1.555 PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 21
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.00 From the CIF: _reflns_number_total 2092 Count of symmetry unique reflns 2136 Completeness (_total/calc) 97.94% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 6 PLAT154_ALERT_1_G The su's on the Cell Angles are Equal (x 10000) 3000 Deg. PLAT180_ALERT_4_G Check Cell Rounding: # of Values Ending with 0 = 3 PLAT791_ALERT_4_G The Model has Chirality at C17 (Verify) .... S
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 10 ALERT level C = Check and explain 5 ALERT level G = General alerts; check 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 4 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Equimolar quantities (1.0 mmol each) of (2S*)-2-amino-3-(1H-indol-3-yl)propionic acid (L-tryptophan) (204 mg) and pyridine-2,4-dicarboxylic acid (167 mg) were mixed in solution (50 ml) of ethanol and water (v:v = 1:1). The mixture was stirred at room temperature for 3 h to give a colourless solution. After keeping the solution in air for 15 d, colourless block-shaped crystals with average size of 0.3 mm × 0.2 mm × 0.2 mm developed.
All the H atoms have been observed in the difference electron density maps. The atoms attached to C atoms were have been constrained: Caryl-H, Cmethylene-H, Cmethyl-H = 0.93, 0.97, 0.96 Å, respectively. Uiso(Haryl)=1.2Ueq(Caryl), Uiso(Hmethylene)=1.2Ueq(Cmethylene), Uiso(Hmethyl)=1.5Ueq(Cmethyl). The hydrogens from N3 have also been constrained: Nammonium-H = 0.89 Å; Uiso(H)=1.5Ueq(N3). The hydrogens involved in the strongest hydrogen bonds (Tab. 1) have been treated differently: The positional parameters of H1 have been refined freely; those of H4 and H7 with the distance restraints 0.88 (1) and 0.85 (1) Å, respectively, H2A with the distance restraint 0.90 (1) Å. The values for these distance restraints have been retrieved from the Cambridge Crystallographic Database (version 5.31 with addenda up to February 26, 2010; Allen, 2002) on the reliably determined structures. The displacement parameters Uiso of H1, H4, H7 and H2A equaled 1.5×Ueq of the respective carrier atoms. In the absence of significant anomalous scattering effects 1628 Friedel pairs have been merged. The absolute structure has been determined from known configuration of (2S*)-2-amino-3-(1H-indol-3-yl)propionic acid (L-tryptophan) used in the preparation.
Supramolecular assemblies are interesting field in the design of new and complicated materials. The compounds bearing imino, carboxylate and pyridine groups readily form supramolecular structures via intermolecular hydrogen bonds (Pourayoubi et al., 2010; Broker & Tiekink, 2010; Hemamalini & Fun, 2010; Narimani & Yamin, 2010). The present paper reports a new supramolecular structure of the title compound.
The title compound consists of (2S*)-2-amino-3-(1H-indol-3-yl)propionic acid molecule in the zwitterionic form, pyridine-2,4-dicarboxylic acid molecule and ethanol molecule (Fig. 1). In the crystal structure, (2S*)-2-amino-3-(1H-indol-3-yl)propionic acid molecules and pyridine-2,4-dicarboxylic acid molecules are linked via the strong intermolecular O—H···O and intermolecular N—H···O hydrogen bonds (Desiraju & Steiner, 1999), see Tab. 1. These molecules form layers parallel to the plane (1 0 0). The layers are further linked with ethanol molecules via weaker intermolecular O–H···O hydrogen bonds (Tab. 1) forming the three-dimensional network (Fig. 2). There is also a C–H···O weak hydrogen bond (Tab. 1). Moreover, there are also π-electron ring—π-electron ring interactions in the structure that are specified in Tab. 2 (Spek, 2009).
The difference electron density map contained some peaks in the vicinity of O5 and O6 along the direction O1-H1 and O7-H7. However, the C18-O5 (1.235 (4) Å) and C18-O6 (1.242 (4) Å) distances corresponded well to the unprotonated C-O distances in the carboxyl group. The search in the Cambridge Crystallographic Database (version 5.31 with addenda up to February 26, 2010; Allen, 2002) has revealed that the average C-O distance in the carboxyl is 1.251 (1) Å from 1269 observations, <i. e.> close to the distances C18-O5 and C18-O6.
For supramolecular structures with imino, carboxylate and pyridine groups interconnected via intermolecular hydrogen bonds, see: Broker & Tiekink (2010); Hemamalini & Fun (2010); Narimani & Yamin (2010); Pourayoubi et al. (2010). For a description of the Cambridge Structural Database, see: Allen (2002). For hydrogen bonding, see: Desiraju & Steiner (1999).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
C11H12N2O2·C7H5NO4·C2H6O | Z = 1 |
Mr = 417.41 | F(000) = 220 |
Triclinic, P1 | Dx = 1.411 Mg m−3 |
Hall symbol: P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.0320 (14) Å | Cell parameters from 1200 reflections |
b = 7.7590 (16) Å | θ = 2.7–24.0° |
c = 9.5800 (19) Å | µ = 0.11 mm−1 |
α = 85.44 (3)° | T = 298 K |
β = 81.89 (3)° | Block, colourless |
γ = 71.84 (3)° | 0.27 × 0.23 × 0.22 mm |
V = 491.34 (19) Å3 |
Bruker SMART 1000 CCD diffractometer | 2092 independent reflections |
Radiation source: fine-focus sealed tube | 1815 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ω scans | θmax = 27.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→8 |
Tmin = 0.971, Tmax = 0.977 | k = −9→9 |
4115 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.109 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0628P)2] where P = (Fo2 + 2Fc2)/3 |
2092 reflections | (Δ/σ)max < 0.001 |
285 parameters | Δρmax = 0.18 e Å−3 |
6 restraints | Δρmin = −0.22 e Å−3 |
78 constraints |
C11H12N2O2·C7H5NO4·C2H6O | γ = 71.84 (3)° |
Mr = 417.41 | V = 491.34 (19) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.0320 (14) Å | Mo Kα radiation |
b = 7.7590 (16) Å | µ = 0.11 mm−1 |
c = 9.5800 (19) Å | T = 298 K |
α = 85.44 (3)° | 0.27 × 0.23 × 0.22 mm |
β = 81.89 (3)° |
Bruker SMART 1000 CCD diffractometer | 2092 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1815 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.977 | Rint = 0.024 |
4115 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 6 restraints |
wR(F2) = 0.109 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.18 e Å−3 |
2092 reflections | Δρmin = −0.22 e Å−3 |
285 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.2726 (4) | 0.7005 (3) | 0.5137 (3) | 0.0503 (7) | |
H1 | 0.276 (7) | 0.635 (7) | 0.439 (6) | 0.075* | |
O2 | 0.1776 (6) | 0.9447 (4) | 0.3743 (3) | 0.0725 (10) | |
O3 | 0.2236 (5) | 0.7586 (4) | 1.0219 (3) | 0.0560 (8) | |
O4 | 0.1597 (5) | 1.0309 (3) | 1.1063 (2) | 0.0509 (7) | |
H4 | 0.175 (7) | 0.970 (6) | 1.187 (3) | 0.076* | |
O5 | 0.5693 (4) | 0.2870 (4) | 1.3453 (3) | 0.0522 (7) | |
O6 | 0.2941 (4) | 0.5149 (4) | 1.3097 (3) | 0.0554 (8) | |
O7 | 0.9134 (4) | 0.3938 (4) | 0.3005 (3) | 0.0601 (8) | |
H7 | 0.831 (6) | 0.332 (6) | 0.301 (6) | 0.090* | |
N1 | 0.1492 (4) | 1.1892 (3) | 0.8482 (3) | 0.0316 (6) | |
N2 | 0.5947 (4) | 0.2711 (4) | 0.6481 (3) | 0.0396 (7) | |
H2A | 0.582 (7) | 0.304 (6) | 0.5569 (17) | 0.059* | |
N3 | 0.2260 (4) | 0.3869 (3) | 1.0847 (3) | 0.0304 (6) | |
H3A | 0.2096 | 0.5039 | 1.0629 | 0.046* | |
H3B | 0.1305 | 0.3763 | 1.1534 | 0.046* | |
H3C | 0.2174 | 0.3316 | 1.0090 | 0.046* | |
C1 | 0.1801 (5) | 1.0105 (4) | 0.8599 (3) | 0.0274 (6) | |
C2 | 0.2031 (5) | 0.9032 (4) | 0.7466 (3) | 0.0288 (7) | |
H2 | 0.2292 | 0.7783 | 0.7597 | 0.035* | |
C3 | 0.1866 (5) | 0.9845 (4) | 0.6140 (3) | 0.0302 (7) | |
C4 | 0.1478 (5) | 1.1699 (5) | 0.6004 (3) | 0.0362 (8) | |
H4A | 0.1329 | 1.2299 | 0.5128 | 0.043* | |
C5 | 0.1316 (5) | 1.2645 (4) | 0.7195 (3) | 0.0346 (7) | |
H5 | 0.1068 | 1.3895 | 0.7090 | 0.042* | |
C6 | 0.2122 (5) | 0.8722 (5) | 0.4871 (3) | 0.0400 (8) | |
C7 | 0.1919 (5) | 0.9201 (4) | 1.0033 (3) | 0.0329 (7) | |
C8 | 0.6594 (5) | 0.0930 (5) | 0.8419 (3) | 0.0311 (7) | |
C9 | 0.6549 (5) | 0.0934 (5) | 0.6954 (3) | 0.0341 (7) | |
C10 | 0.7065 (6) | −0.0663 (5) | 0.6231 (4) | 0.0451 (9) | |
H10 | 0.7036 | −0.0642 | 0.5263 | 0.054* | |
C11 | 0.7617 (6) | −0.2262 (5) | 0.6995 (5) | 0.0502 (10) | |
H11 | 0.7968 | −0.3349 | 0.6535 | 0.060* | |
C12 | 0.7666 (6) | −0.2308 (6) | 0.8447 (5) | 0.0510 (10) | |
H12 | 0.8051 | −0.3420 | 0.8938 | 0.061* | |
C13 | 0.7152 (5) | −0.0727 (5) | 0.9160 (4) | 0.0402 (8) | |
H13 | 0.7178 | −0.0767 | 1.0130 | 0.048* | |
C14 | 0.6009 (5) | 0.2784 (4) | 0.8802 (3) | 0.0314 (7) | |
C15 | 0.5622 (5) | 0.3797 (5) | 0.7600 (4) | 0.0354 (7) | |
H15 | 0.5194 | 0.5059 | 0.7544 | 0.043* | |
C16 | 0.5926 (5) | 0.3425 (5) | 1.0252 (3) | 0.0368 (8) | |
H16A | 0.5705 | 0.4726 | 1.0191 | 0.044* | |
H16B | 0.7223 | 0.2856 | 1.0590 | 0.044* | |
C17 | 0.4276 (5) | 0.3016 (4) | 1.1330 (3) | 0.0303 (7) | |
H17 | 0.4531 | 0.1699 | 1.1423 | 0.036* | |
C18 | 0.4303 (5) | 0.3726 (5) | 1.2774 (3) | 0.0349 (7) | |
C19 | 0.7449 (10) | 0.7082 (7) | 0.2595 (6) | 0.0880 (18) | |
H19A | 0.6650 | 0.6699 | 0.2022 | 0.132* | |
H19B | 0.8566 | 0.7329 | 0.2008 | 0.132* | |
H19C | 0.6635 | 0.8162 | 0.3066 | 0.132* | |
C20 | 0.8210 (7) | 0.5635 (6) | 0.3650 (5) | 0.0608 (11) | |
H20A | 0.9183 | 0.5939 | 0.4129 | 0.073* | |
H20B | 0.7101 | 0.5543 | 0.4350 | 0.073* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0771 (19) | 0.0433 (16) | 0.0285 (13) | −0.0102 (14) | −0.0109 (12) | −0.0145 (11) |
O2 | 0.128 (3) | 0.066 (2) | 0.0212 (13) | −0.0198 (19) | −0.0207 (15) | −0.0064 (13) |
O3 | 0.105 (2) | 0.0348 (14) | 0.0324 (14) | −0.0252 (15) | −0.0166 (14) | 0.0061 (11) |
O4 | 0.100 (2) | 0.0418 (15) | 0.0188 (11) | −0.0313 (15) | −0.0099 (13) | 0.0001 (10) |
O5 | 0.0589 (17) | 0.0725 (19) | 0.0293 (13) | −0.0211 (14) | −0.0158 (12) | −0.0036 (13) |
O6 | 0.0627 (18) | 0.0611 (18) | 0.0423 (16) | −0.0106 (14) | −0.0094 (13) | −0.0298 (13) |
O7 | 0.0569 (18) | 0.0624 (19) | 0.0623 (19) | −0.0243 (14) | 0.0092 (15) | −0.0139 (15) |
N1 | 0.0417 (15) | 0.0273 (14) | 0.0255 (13) | −0.0086 (11) | −0.0053 (11) | −0.0044 (11) |
N2 | 0.0477 (17) | 0.0486 (18) | 0.0227 (14) | −0.0155 (14) | −0.0048 (12) | 0.0021 (13) |
N3 | 0.0396 (15) | 0.0306 (14) | 0.0244 (13) | −0.0147 (12) | −0.0020 (10) | −0.0080 (10) |
C1 | 0.0315 (15) | 0.0293 (15) | 0.0226 (14) | −0.0100 (12) | −0.0040 (11) | −0.0028 (12) |
C2 | 0.0369 (16) | 0.0255 (15) | 0.0235 (15) | −0.0069 (13) | −0.0046 (12) | −0.0063 (12) |
C3 | 0.0294 (16) | 0.0399 (18) | 0.0219 (14) | −0.0090 (14) | −0.0053 (12) | −0.0062 (13) |
C4 | 0.047 (2) | 0.0393 (19) | 0.0226 (16) | −0.0142 (16) | −0.0075 (14) | 0.0034 (14) |
C5 | 0.0436 (18) | 0.0273 (16) | 0.0329 (17) | −0.0100 (14) | −0.0083 (14) | 0.0030 (13) |
C6 | 0.050 (2) | 0.046 (2) | 0.0230 (18) | −0.0117 (17) | −0.0045 (15) | −0.0066 (15) |
C7 | 0.0490 (19) | 0.0331 (19) | 0.0219 (15) | −0.0177 (15) | −0.0084 (13) | −0.0028 (13) |
C8 | 0.0297 (16) | 0.0371 (17) | 0.0276 (15) | −0.0126 (13) | 0.0003 (12) | −0.0050 (13) |
C9 | 0.0324 (17) | 0.0437 (19) | 0.0283 (16) | −0.0144 (15) | −0.0017 (13) | −0.0053 (15) |
C10 | 0.051 (2) | 0.056 (2) | 0.0306 (18) | −0.0194 (18) | 0.0049 (15) | −0.0206 (17) |
C11 | 0.046 (2) | 0.044 (2) | 0.061 (3) | −0.0128 (18) | 0.0051 (19) | −0.022 (2) |
C12 | 0.051 (2) | 0.038 (2) | 0.059 (3) | −0.0112 (17) | 0.0027 (19) | −0.0013 (18) |
C13 | 0.043 (2) | 0.040 (2) | 0.0339 (18) | −0.0092 (16) | −0.0002 (14) | 0.0002 (16) |
C14 | 0.0327 (17) | 0.0356 (17) | 0.0255 (15) | −0.0096 (14) | 0.0001 (12) | −0.0075 (13) |
C15 | 0.0391 (18) | 0.0355 (18) | 0.0319 (17) | −0.0134 (15) | 0.0004 (14) | −0.0025 (14) |
C16 | 0.0455 (19) | 0.0410 (19) | 0.0288 (17) | −0.0209 (15) | 0.0004 (14) | −0.0071 (14) |
C17 | 0.0397 (17) | 0.0310 (16) | 0.0241 (15) | −0.0147 (13) | −0.0050 (12) | −0.0051 (12) |
C18 | 0.0426 (19) | 0.046 (2) | 0.0233 (15) | −0.0229 (16) | −0.0025 (13) | −0.0059 (14) |
C19 | 0.122 (5) | 0.070 (4) | 0.056 (3) | −0.013 (3) | −0.001 (3) | 0.002 (3) |
C20 | 0.061 (3) | 0.074 (3) | 0.046 (2) | −0.023 (2) | 0.0042 (19) | −0.013 (2) |
O1—C6 | 1.282 (5) | C5—H5 | 0.9300 |
O1—H1 | 0.90 (5) | C8—C13 | 1.390 (5) |
O2—C6 | 1.199 (4) | C8—C9 | 1.408 (5) |
O3—C7 | 1.205 (4) | C8—C14 | 1.430 (5) |
O4—C7 | 1.310 (4) | C9—C10 | 1.389 (5) |
O4—H4 | 0.875 (11) | C10—C11 | 1.364 (6) |
O5—C18 | 1.235 (4) | C10—H10 | 0.9300 |
O6—C18 | 1.242 (4) | C11—C12 | 1.393 (6) |
O7—C20 | 1.422 (5) | C11—H11 | 0.9300 |
O7—H7 | 0.855 (11) | C12—C13 | 1.374 (5) |
N1—C5 | 1.326 (4) | C12—H12 | 0.9300 |
N1—C1 | 1.333 (4) | C13—H13 | 0.9300 |
N2—C15 | 1.367 (4) | C14—C15 | 1.352 (5) |
N2—C9 | 1.370 (5) | C14—C16 | 1.500 (4) |
N2—H2A | 0.899 (11) | C15—H15 | 0.9300 |
N3—C17 | 1.488 (4) | C16—C17 | 1.534 (4) |
N3—H3A | 0.8900 | C16—H16A | 0.9700 |
N3—H3B | 0.8900 | C16—H16B | 0.9700 |
N3—H3C | 0.8900 | C17—C18 | 1.534 (4) |
C1—C2 | 1.381 (4) | C17—H17 | 0.9800 |
C1—C7 | 1.493 (4) | C19—C20 | 1.472 (7) |
C2—C3 | 1.376 (4) | C19—H19A | 0.9600 |
C2—H2 | 0.9300 | C19—H19B | 0.9600 |
C3—C4 | 1.377 (5) | C19—H19C | 0.9600 |
C3—C6 | 1.509 (4) | C20—H20A | 0.9700 |
C4—C5 | 1.378 (5) | C20—H20B | 0.9700 |
C4—H4A | 0.9300 | ||
C6—O1—H1 | 113 (3) | C10—C11—C12 | 121.7 (4) |
C7—O4—H4 | 110 (3) | C10—C11—H11 | 119.2 |
C20—O7—H7 | 112 (4) | C12—C11—H11 | 119.2 |
C5—N1—C1 | 116.2 (3) | C13—C12—C11 | 120.7 (4) |
C15—N2—C9 | 108.7 (3) | C13—C12—H12 | 119.6 |
C15—N2—H2A | 128 (3) | C11—C12—H12 | 119.6 |
C9—N2—H2A | 123 (3) | C12—C13—C8 | 119.4 (3) |
C17—N3—H3A | 109.5 | C12—C13—H13 | 120.3 |
C17—N3—H3B | 109.5 | C8—C13—H13 | 120.3 |
H3A—N3—H3B | 109.5 | C15—C14—C8 | 106.3 (3) |
C17—N3—H3C | 109.5 | C15—C14—C16 | 128.1 (3) |
H3A—N3—H3C | 109.5 | C8—C14—C16 | 125.6 (3) |
H3B—N3—H3C | 109.5 | C14—C15—N2 | 110.7 (3) |
N1—C1—C2 | 123.8 (3) | C14—C15—H15 | 124.7 |
N1—C1—C7 | 118.4 (3) | N2—C15—H15 | 124.7 |
C2—C1—C7 | 117.8 (3) | C14—C16—C17 | 114.1 (3) |
C3—C2—C1 | 118.8 (3) | C14—C16—H16A | 108.7 |
C3—C2—H2 | 120.6 | C17—C16—H16A | 108.7 |
C1—C2—H2 | 120.6 | C14—C16—H16B | 108.7 |
C2—C3—C4 | 118.3 (3) | C17—C16—H16B | 108.7 |
C2—C3—C6 | 120.5 (3) | H16A—C16—H16B | 107.6 |
C4—C3—C6 | 121.2 (3) | N3—C17—C18 | 109.6 (3) |
C3—C4—C5 | 118.5 (3) | N3—C17—C16 | 110.3 (3) |
C3—C4—H4A | 120.7 | C18—C17—C16 | 110.3 (3) |
C5—C4—H4A | 120.7 | N3—C17—H17 | 108.8 |
N1—C5—C4 | 124.3 (3) | C18—C17—H17 | 108.8 |
N1—C5—H5 | 117.8 | C16—C17—H17 | 108.8 |
C4—C5—H5 | 117.8 | O5—C18—O6 | 127.7 (3) |
O2—C6—O1 | 125.9 (3) | O5—C18—C17 | 117.1 (3) |
O2—C6—C3 | 120.3 (3) | O6—C18—C17 | 115.1 (3) |
O1—C6—C3 | 113.8 (3) | C20—C19—H19A | 109.5 |
O3—C7—O4 | 123.2 (3) | C20—C19—H19B | 109.5 |
O3—C7—C1 | 122.3 (3) | H19A—C19—H19B | 109.5 |
O4—C7—C1 | 114.5 (3) | C20—C19—H19C | 109.5 |
C13—C8—C9 | 118.6 (3) | H19A—C19—H19C | 109.5 |
C13—C8—C14 | 134.3 (3) | H19B—C19—H19C | 109.5 |
C9—C8—C14 | 107.1 (3) | O7—C20—C19 | 111.0 (4) |
N2—C9—C10 | 130.7 (3) | O7—C20—H20A | 109.4 |
N2—C9—C8 | 107.2 (3) | C19—C20—H20A | 109.4 |
C10—C9—C8 | 122.1 (3) | O7—C20—H20B | 109.4 |
C11—C10—C9 | 117.6 (3) | C19—C20—H20B | 109.4 |
C11—C10—H10 | 121.2 | H20A—C20—H20B | 108.0 |
C9—C10—H10 | 121.2 |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3C···N1i | 0.89 | 2.15 | 3.032 (4) | 170 |
N3—H3B···O7ii | 0.89 | 1.90 | 2.787 (4) | 171 |
N3—H3A···O3 | 0.89 | 2.01 | 2.894 (4) | 170 |
N2—H2A···O5iii | 0.90 (1) | 2.06 (2) | 2.922 (4) | 161 (4) |
O7—H7···O5iii | 0.86 (1) | 1.96 (3) | 2.762 (4) | 155 (5) |
O1—H1···O6iii | 0.90 (5) | 1.58 (6) | 2.479 (3) | 177 (5) |
O4—H4···O2iv | 0.88 (1) | 1.79 (2) | 2.611 (3) | 155 (5) |
C20—H20A···O6v | 0.97 | 2.59 | 3.200 (6) | 122 |
Symmetry codes: (i) x, y−1, z; (ii) x−1, y, z+1; (iii) x, y, z−1; (iv) x, y, z+1; (v) x+1, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C11H12N2O2·C7H5NO4·C2H6O |
Mr | 417.41 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.0320 (14), 7.7590 (16), 9.5800 (19) |
α, β, γ (°) | 85.44 (3), 81.89 (3), 71.84 (3) |
V (Å3) | 491.34 (19) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.27 × 0.23 × 0.22 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.971, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4115, 2092, 1815 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.109, 1.02 |
No. of reflections | 2092 |
No. of parameters | 285 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.22 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3C···N1i | 0.89 | 2.15 | 3.032 (4) | 169.6 |
N3—H3B···O7ii | 0.89 | 1.90 | 2.787 (4) | 171.1 |
N3—H3A···O3 | 0.89 | 2.01 | 2.894 (4) | 169.7 |
N2—H2A···O5iii | 0.899 (11) | 2.059 (19) | 2.922 (4) | 161 (4) |
O7—H7···O5iii | 0.855 (11) | 1.96 (3) | 2.762 (4) | 155 (5) |
O1—H1···O6iii | 0.90 (5) | 1.58 (6) | 2.479 (3) | 177 (5) |
O4—H4···O2iv | 0.875 (11) | 1.79 (2) | 2.611 (3) | 155 (5) |
C20—H20A···O6v | 0.97 | 2.59 | 3.200 (6) | 121.5 |
Symmetry codes: (i) x, y−1, z; (ii) x−1, y, z+1; (iii) x, y, z−1; (iv) x, y, z+1; (v) x+1, y, z−1. |
Cg1, Cg2 and Cg3 are the centroids of the N2,C9,C8,C14,C15 (pyrrole), C8–C13 (benzene) and N1,C1–C5 (pyridine), respectively. |
Cg···Cg | distance | Cg···Cg | distance |
Cg1···Cg3i | 3.665 (2) | Cg2···Cg3i | 3.722 (2) |
Cg1···Cg3ii | 3.683 (2) | Cg2···Cg3ii | 3.701 (2) |
Symmetry codes: (i) 1+x, -1+y, z; (ii) x, -1+y, z. |
Supramolecular assemblies are interesting field in the design of new and complicated materials. The compounds bearing imino, carboxylate and pyridine groups readily form supramolecular structures via intermolecular hydrogen bonds (Pourayoubi et al., 2010; Broker & Tiekink, 2010; Hemamalini & Fun, 2010; Narimani & Yamin, 2010). The present paper reports a new supramolecular structure of the title compound.
The title compound consists of (2S*)-2-amino-3-(1H-indol-3-yl)propionic acid molecule in the zwitterionic form, pyridine-2,4-dicarboxylic acid molecule and ethanol molecule (Fig. 1). In the crystal structure, (2S*)-2-amino-3-(1H-indol-3-yl)propionic acid molecules and pyridine-2,4-dicarboxylic acid molecules are linked via the strong intermolecular O—H···O and intermolecular N—H···O hydrogen bonds (Desiraju & Steiner, 1999), see Tab. 1. These molecules form layers parallel to the plane (1 0 0). The layers are further linked with ethanol molecules via weaker intermolecular O–H···O hydrogen bonds (Tab. 1) forming the three-dimensional network (Fig. 2). There is also a C–H···O weak hydrogen bond (Tab. 1). Moreover, there are also π-electron ring—π-electron ring interactions in the structure that are specified in Tab. 2 (Spek, 2009).
The difference electron density map contained some peaks in the vicinity of O5 and O6 along the direction O1-H1 and O7-H7. However, the C18-O5 (1.235 (4) Å) and C18-O6 (1.242 (4) Å) distances corresponded well to the unprotonated C-O distances in the carboxyl group. The search in the Cambridge Crystallographic Database (version 5.31 with addenda up to February 26, 2010; Allen, 2002) has revealed that the average C-O distance in the carboxyl is 1.251 (1) Å from 1269 observations, <i. e.> close to the distances C18-O5 and C18-O6.