The title compound, [NiCl(C7H20N4)(H2O)]Cl, has the Ni atom in a distorted octahedral coordination with the four amino N atoms occupying a square plane while the chloro and aqua ligands occupy the axial positions. The Ni-N bond distances range from 2.079 (1) to 2.088 (2) Å.
Supporting information
CCDC reference: 226673
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean
(C-C) = 0.002 Å
- R factor = 0.034
- wR factor = 0.090
- Data-to-parameter ratio = 21.6
checkCIF/PLATON results
No syntax errors found
Alert level A
PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.96
Alert level C
PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ?
PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Ni1 - O1 = 6.22 su
PLAT420_ALERT_2_C D-H Without Acceptor N3 - H3C ... ?
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2
Cl
1 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
4 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
2 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: SMART (Bruker, 2000); cell refinement: SMART and SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Crystal data top
[NiCl(C7H20N4)(H2O)]Cl | F(000) = 648 |
Mr = 307.90 | Dx = 1.537 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 8.3029 (6) Å | Cell parameters from 112 reflections |
b = 10.2497 (7) Å | θ = 2.0–28.0° |
c = 15.6829 (11) Å | µ = 1.84 mm−1 |
β = 94.470 (2)° | T = 173 K |
V = 1330.59 (16) Å3 | Plates, purple |
Z = 4 | 0.26 × 0.24 × 0.23 mm |
Data collection top
Bruker SMART 1K CCD area-detector diffractometer | 2944 independent reflections |
Radiation source: normal-focus sealed tube | 2798 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.089 |
ω scans | θmax = 27.5°, θmin = 2.4° |
Absorption correction: integration based on measured indexed crystal faces (SHELXTL; Bruker 2000) | h = −5→10 |
Tmin = 0.536, Tmax = 0.753 | k = −12→13 |
7715 measured reflections | l = −20→19 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0519P)2 + 0.4679P] where P = (Fo2 + 2Fc2)/3 |
2944 reflections | (Δ/σ)max < 0.001 |
136 parameters | Δρmax = 0.53 e Å−3 |
0 restraints | Δρmin = −0.94 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Ni1 | 0.78449 (2) | 0.200477 (19) | 0.951551 (11) | 0.01390 (10) | |
Cl1 | 0.76001 (5) | −0.04034 (4) | 0.94595 (2) | 0.01992 (12) | |
O1 | 0.80502 (17) | 0.41211 (12) | 0.96292 (8) | 0.0227 (3) | |
H1 | 0.8419 | 0.4271 | 1.0219 | 0.034* | |
H2 | 0.8695 | 0.4534 | 0.9214 | 0.034* | |
N1 | 0.86804 (19) | 0.18345 (15) | 1.07950 (9) | 0.0192 (3) | |
H1C | 0.9422 | 0.1169 | 1.0866 | 0.023* | |
H1D | 0.9166 | 0.2598 | 1.0987 | 0.023* | |
C1 | 0.7251 (2) | 0.1552 (2) | 1.12727 (10) | 0.0246 (4) | |
H1A | 0.7499 | 0.1735 | 1.1889 | 0.030* | |
H1B | 0.6950 | 0.0620 | 1.1208 | 0.030* | |
N2 | 0.55830 (19) | 0.21593 (14) | 0.99917 (9) | 0.0170 (3) | |
H2C | 0.5102 | 0.1342 | 0.9932 | 0.020* | |
C2 | 0.5869 (2) | 0.24066 (19) | 1.09178 (10) | 0.0229 (3) | |
H2A | 0.4881 | 0.2205 | 1.1208 | 0.028* | |
H2B | 0.6141 | 0.3337 | 1.1019 | 0.028* | |
N3 | 0.68530 (19) | 0.20861 (12) | 0.82554 (9) | 0.0168 (3) | |
H3C | 0.6387 | 0.1275 | 0.8135 | 0.020* | |
C3 | 0.4440 (2) | 0.31027 (17) | 0.95647 (11) | 0.0219 (4) | |
H3A | 0.4882 | 0.3995 | 0.9643 | 0.026* | |
H3B | 0.3404 | 0.3067 | 0.9837 | 0.026* | |
N4 | 1.00343 (19) | 0.19338 (13) | 0.89465 (9) | 0.0181 (3) | |
H4C | 1.0504 | 0.2747 | 0.8950 | 0.022* | |
H4D | 1.0736 | 0.1365 | 0.9237 | 0.022* | |
C4 | 0.4128 (2) | 0.28200 (18) | 0.86086 (11) | 0.0235 (4) | |
H4A | 0.3793 | 0.1897 | 0.8536 | 0.028* | |
H4B | 0.3215 | 0.3369 | 0.8377 | 0.028* | |
C5 | 0.5566 (2) | 0.30616 (16) | 0.80790 (11) | 0.0227 (4) | |
H5A | 0.5197 | 0.3035 | 0.7464 | 0.027* | |
H5B | 0.6008 | 0.3943 | 0.8209 | 0.027* | |
C6 | 0.8181 (2) | 0.22318 (19) | 0.76849 (10) | 0.0218 (3) | |
H6A | 0.8455 | 0.3166 | 0.7629 | 0.026* | |
H6B | 0.7835 | 0.1890 | 0.7109 | 0.026* | |
C7 | 0.9654 (2) | 0.14816 (18) | 0.80580 (10) | 0.0221 (3) | |
H7A | 0.9425 | 0.0534 | 0.8052 | 0.027* | |
H7B | 1.0584 | 0.1643 | 0.7714 | 0.027* | |
Cl2 | 0.94440 (6) | 0.48000 (4) | 1.15627 (3) | 0.02640 (13) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ni1 | 0.01377 (15) | 0.01472 (15) | 0.01306 (14) | −0.00074 (7) | 0.00004 (9) | 0.00037 (6) |
Cl1 | 0.0196 (2) | 0.0153 (2) | 0.0246 (2) | −0.00119 (14) | −0.00034 (15) | 0.00160 (13) |
O1 | 0.0252 (6) | 0.0189 (6) | 0.0239 (6) | −0.0039 (5) | 0.0003 (5) | −0.0001 (4) |
N1 | 0.0203 (7) | 0.0206 (6) | 0.0162 (6) | −0.0008 (6) | −0.0019 (5) | 0.0001 (5) |
C1 | 0.0250 (9) | 0.0335 (9) | 0.0151 (7) | −0.0047 (8) | 0.0000 (6) | 0.0021 (7) |
N2 | 0.0159 (7) | 0.0185 (6) | 0.0166 (6) | −0.0011 (5) | 0.0008 (5) | −0.0016 (5) |
C2 | 0.0202 (8) | 0.0323 (9) | 0.0166 (7) | −0.0031 (7) | 0.0034 (6) | −0.0063 (7) |
N3 | 0.0174 (7) | 0.0183 (7) | 0.0145 (6) | −0.0013 (5) | −0.0010 (5) | 0.0010 (5) |
C3 | 0.0188 (8) | 0.0222 (8) | 0.0246 (8) | 0.0037 (6) | 0.0005 (7) | −0.0025 (6) |
N4 | 0.0155 (7) | 0.0191 (7) | 0.0196 (7) | −0.0014 (5) | 0.0002 (5) | 0.0004 (5) |
C4 | 0.0169 (8) | 0.0282 (8) | 0.0246 (8) | 0.0025 (7) | −0.0032 (6) | 0.0003 (7) |
C5 | 0.0220 (9) | 0.0252 (9) | 0.0201 (8) | 0.0018 (7) | −0.0040 (7) | 0.0048 (6) |
C6 | 0.0215 (9) | 0.0292 (8) | 0.0147 (7) | −0.0032 (7) | 0.0023 (6) | 0.0018 (6) |
C7 | 0.0221 (8) | 0.0252 (8) | 0.0196 (7) | −0.0002 (7) | 0.0057 (6) | −0.0017 (6) |
Cl2 | 0.0329 (3) | 0.0203 (2) | 0.0261 (2) | −0.00685 (16) | 0.00343 (18) | −0.00204 (15) |
Geometric parameters (Å, º) top
Ni1—N1 | 2.0788 (14) | N3—C5 | 1.474 (2) |
Ni1—N2 | 2.0805 (16) | N3—C6 | 1.480 (2) |
Ni1—N3 | 2.0825 (13) | N3—H3C | 0.9300 |
Ni1—N4 | 2.0878 (16) | C3—C4 | 1.529 (2) |
Ni1—O1 | 2.1821 (13) | C3—H3A | 0.9900 |
Ni1—Cl1 | 2.4777 (5) | C3—H3B | 0.9900 |
O1—H1 | 0.9632 | N4—C7 | 1.479 (2) |
O1—H2 | 0.9721 | N4—H4C | 0.9200 |
N1—C1 | 1.481 (2) | N4—H4D | 0.9200 |
N1—H1C | 0.9200 | C4—C5 | 1.527 (3) |
N1—H1D | 0.9200 | C4—H4A | 0.9900 |
C1—C2 | 1.515 (3) | C4—H4B | 0.9900 |
C1—H1A | 0.9900 | C5—H5A | 0.9900 |
C1—H1B | 0.9900 | C5—H5B | 0.9900 |
N2—C2 | 1.475 (2) | C6—C7 | 1.523 (2) |
N2—C3 | 1.478 (2) | C6—H6A | 0.9900 |
N2—H2C | 0.9300 | C6—H6B | 0.9900 |
C2—H2A | 0.9900 | C7—H7A | 0.9900 |
C2—H2B | 0.9900 | C7—H7B | 0.9900 |
| | | |
N1—Ni1—N2 | 84.41 (6) | C5—N3—C6 | 112.40 (13) |
N1—Ni1—N3 | 175.50 (6) | C5—N3—Ni1 | 115.63 (10) |
N2—Ni1—N3 | 92.08 (6) | C6—N3—Ni1 | 108.63 (11) |
N1—Ni1—N4 | 99.99 (6) | C5—N3—H3C | 106.5 |
N2—Ni1—N4 | 175.18 (5) | C6—N3—H3C | 106.5 |
N3—Ni1—N4 | 83.62 (6) | Ni1—N3—H3C | 106.5 |
N1—Ni1—O1 | 89.23 (5) | N2—C3—C4 | 111.95 (14) |
N2—Ni1—O1 | 87.82 (5) | N2—C3—H3A | 109.2 |
N3—Ni1—O1 | 93.46 (5) | C4—C3—H3A | 109.2 |
N4—Ni1—O1 | 90.26 (5) | N2—C3—H3B | 109.2 |
N1—Ni1—Cl1 | 88.33 (4) | C4—C3—H3B | 109.2 |
N2—Ni1—Cl1 | 90.84 (4) | H3A—C3—H3B | 107.9 |
N3—Ni1—Cl1 | 88.91 (4) | C7—N4—Ni1 | 106.55 (11) |
N4—Ni1—Cl1 | 91.25 (4) | C7—N4—H4C | 110.4 |
O1—Ni1—Cl1 | 177.32 (3) | Ni1—N4—H4C | 110.4 |
Ni1—O1—H1 | 104.7 | C7—N4—H4D | 110.4 |
Ni1—O1—H2 | 114.9 | Ni1—N4—H4D | 110.4 |
H1—O1—H2 | 115.1 | H4C—N4—H4D | 108.6 |
C1—N1—Ni1 | 106.52 (10) | C5—C4—C3 | 115.00 (15) |
C1—N1—H1C | 110.4 | C5—C4—H4A | 108.5 |
Ni1—N1—H1C | 110.4 | C3—C4—H4A | 108.5 |
C1—N1—H1D | 110.4 | C5—C4—H4B | 108.5 |
Ni1—N1—H1D | 110.4 | C3—C4—H4B | 108.5 |
H1C—N1—H1D | 108.6 | H4A—C4—H4B | 107.5 |
N1—C1—C2 | 108.36 (14) | N3—C5—C4 | 111.97 (14) |
N1—C1—H1A | 110.0 | N3—C5—H5A | 109.2 |
C2—C1—H1A | 110.0 | C4—C5—H5A | 109.2 |
N1—C1—H1B | 110.0 | N3—C5—H5B | 109.2 |
C2—C1—H1B | 110.0 | C4—C5—H5B | 109.2 |
H1A—C1—H1B | 108.4 | H5A—C5—H5B | 107.9 |
C2—N2—C3 | 112.45 (14) | N3—C6—C7 | 109.31 (13) |
C2—N2—Ni1 | 106.62 (11) | N3—C6—H6A | 109.8 |
C3—N2—Ni1 | 116.94 (11) | C7—C6—H6A | 109.8 |
C2—N2—H2C | 106.8 | N3—C6—H6B | 109.8 |
C3—N2—H2C | 106.8 | C7—C6—H6B | 109.8 |
Ni1—N2—H2C | 106.8 | H6A—C6—H6B | 108.3 |
N2—C2—C1 | 108.75 (14) | N4—C7—C6 | 108.04 (14) |
N2—C2—H2A | 109.9 | N4—C7—H7A | 110.1 |
C1—C2—H2A | 109.9 | C6—C7—H7A | 110.1 |
N2—C2—H2B | 109.9 | N4—C7—H7B | 110.1 |
C1—C2—H2B | 109.9 | C6—C7—H7B | 110.1 |
H2A—C2—H2B | 108.3 | H7A—C7—H7B | 108.4 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···Cl2 | 0.96 | 2.28 | 3.2359 (13) | 174 |
N1—H1D···Cl2 | 0.92 | 2.44 | 3.3123 (16) | 159 |
O1—H2···Cl2i | 0.97 | 2.15 | 3.1066 (14) | 167 |
N4—H4C···Cl2i | 0.92 | 2.64 | 3.4766 (14) | 151 |
N1—H1C···Cl1ii | 0.92 | 2.68 | 3.4699 (17) | 144 |
N4—H4D···Cl1ii | 0.92 | 2.57 | 3.4356 (15) | 157 |
N4—H4C···Cl2i | 0.92 | 2.64 | 3.4766 (14) | 151 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) −x+2, −y, −z+2. |