The title compounds, 2-{[tris(hydroxymethyl)methyl]aminomethylene}cyclohexa-3,5-dien-1(2
H)-one, C
11H
15NO
4, (I), 6-hydroxy-2-{[tris(hydroxymethyl)methyl]aminomethylene}cyclohexa-3,5-dien-1(2
H)-one, C
11H
15NO
5, (II), and 6-methoxy-2-{[tris(hydroxymethyl)methyl]aminomethylene}cyclohexa-3,5-dien-1(2
H)-one, C
12H
17NO
5, (III), adopt the keto–amine tautomeric form, with the formal hydroxy H atom located on the N atom, and the NH group and oxo O atom display a strong intramolecular N—H

O hydrogen bond. The N—H

O hydrogen-bonded rings are almost planar and coupled with the cyclohexadiene rings. The carbonyl O atoms accept two other H atoms from the alcohol groups of adjacent molecules in (I), and one from the alcohol and one from the phenol group in (II), but from only one alcohol H atom in (III).
Supporting information
CCDC references: 226122; 226123; 226124
For compound (I), a solution of tris(hydroxymethyl)aminomethane (2.42 g, 20 mmol) in butane-1-ol (75 ml) was added to a solution of salicylaldehyde (2.44 g, 20 mmol) in butane-1-ol (75 ml). The mixture was stirred at reflux temperature, and the water produced in the reaction was distilled out of the reaction mixture. The resulting yellow precipitate was filtered and recrystallized from ethyl alcohol by slow evaporation, and well shaped crystals of (I) were obtained. Compounds (II) and (III) were synthesized and crystallized using exactly the same procedure as for (I) Different starting materials?, but recrystallization was carried out in acetonitrile for (III) instead of ethyl alcohol. Yields: 95%, m.p. 422–423 K for (I), 90%, m.p. 415–417 K for (II) and 95%, m.p. 454–455 K for (III).
All H atoms were freely refined. For (I), C—H distances are in the range 0.938 (19)–1.011 (17) Å and Uiso(H) values are in the range 0.022 (4)–0.056 (6) Å2. For (II), C—H distances are in the range 0.974 (17)–1.007 (18) Å and Uiso(H) values are in the range 0.025 (4)–0.057 (7) Å2. For (III), C—H distances are in the range 0.95 (2)–1.02 (2) Å and Uiso(H) values are in the range 0.021 (4)–0.047 (6) Å2.
For all compounds, data collection: SMART (Bruker, 1997); cell refinement: SMART; data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
(I) 2-{[tris(hydroxymethyl)methyl]aminomethylene}cyclohexa-3,5-dien-1(2
H)-one
top
Crystal data top
C11H15NO4 | F(000) = 480 |
Mr = 225.24 | Dx = 1.333 Mg m−3 |
Monoclinic, P21/c | Melting point = 422–423 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 10.4437 (9) Å | Cell parameters from 986 reflections |
b = 8.7029 (7) Å | θ = 2.8–26.6° |
c = 12.6147 (11) Å | µ = 0.10 mm−1 |
β = 101.801 (2)° | T = 208 K |
V = 1122.32 (16) Å3 | Prism, colourless |
Z = 4 | 0.30 × 0.30 × 0.30 mm |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2226 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.039 |
Graphite monochromator | θmax = 28.0°, θmin = 2.0° |
ω scans | h = −13→13 |
12824 measured reflections | k = −11→11 |
2701 independent reflections | l = −16→16 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.111 | All H-atom parameters refined |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0531P)2 + 0.3161P] where P = (Fo2 + 2Fc2)/3 |
2701 reflections | (Δ/σ)max < 0.001 |
206 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
Crystal data top
C11H15NO4 | V = 1122.32 (16) Å3 |
Mr = 225.24 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.4437 (9) Å | µ = 0.10 mm−1 |
b = 8.7029 (7) Å | T = 208 K |
c = 12.6147 (11) Å | 0.30 × 0.30 × 0.30 mm |
β = 101.801 (2)° | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2226 reflections with I > 2σ(I) |
12824 measured reflections | Rint = 0.039 |
2701 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.111 | All H-atom parameters refined |
S = 1.10 | Δρmax = 0.38 e Å−3 |
2701 reflections | Δρmin = −0.19 e Å−3 |
206 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.27644 (10) | 0.47289 (11) | 0.65317 (7) | 0.0278 (2) | |
O2 | 0.53462 (11) | 0.28376 (13) | 0.57069 (8) | 0.0325 (3) | |
O3 | 0.39387 (11) | 0.00670 (11) | 0.35914 (8) | 0.0304 (3) | |
O4 | 0.23193 (12) | 0.31687 (14) | 0.21920 (8) | 0.0363 (3) | |
N1 | 0.29931 (11) | 0.37796 (12) | 0.46098 (9) | 0.0221 (2) | |
C1 | 0.15370 (13) | 0.57931 (15) | 0.48991 (10) | 0.0223 (3) | |
C2 | 0.19332 (13) | 0.57507 (15) | 0.60510 (11) | 0.0236 (3) | |
C3 | 0.13955 (16) | 0.68809 (19) | 0.66395 (12) | 0.0343 (4) | |
C4 | 0.05145 (17) | 0.79386 (19) | 0.61230 (13) | 0.0369 (4) | |
C5 | 0.00882 (15) | 0.79419 (17) | 0.49954 (13) | 0.0307 (3) | |
C6 | 0.06057 (14) | 0.68829 (16) | 0.43998 (11) | 0.0258 (3) | |
C7 | 0.21039 (13) | 0.47852 (15) | 0.42278 (11) | 0.0232 (3) | |
C8 | 0.37286 (13) | 0.27869 (14) | 0.39986 (10) | 0.0215 (3) | |
C9 | 0.51718 (14) | 0.29251 (17) | 0.45650 (11) | 0.0271 (3) | |
C10 | 0.32288 (14) | 0.11389 (15) | 0.40903 (11) | 0.0258 (3) | |
C11 | 0.36008 (15) | 0.33264 (17) | 0.28286 (11) | 0.0276 (3) | |
H1N | 0.3223 (16) | 0.375 (2) | 0.5350 (14) | 0.030 (4)* | |
H2O | 0.554 (2) | 0.193 (3) | 0.5903 (17) | 0.051 (6)* | |
H3O | 0.355 (2) | 0.005 (2) | 0.2878 (18) | 0.049 (6)* | |
H4O | 0.228 (2) | 0.227 (3) | 0.1896 (18) | 0.056 (6)* | |
H3 | 0.1679 (18) | 0.690 (2) | 0.7424 (15) | 0.041 (5)* | |
H4 | 0.017 (2) | 0.869 (3) | 0.6519 (16) | 0.054 (6)* | |
H5 | −0.0549 (18) | 0.864 (2) | 0.4654 (14) | 0.039 (5)* | |
H6 | 0.0318 (16) | 0.6853 (19) | 0.3639 (13) | 0.027 (4)* | |
H7 | 0.1814 (15) | 0.4834 (18) | 0.3459 (13) | 0.022 (4)* | |
H9A | 0.5507 (16) | 0.397 (2) | 0.4396 (13) | 0.031 (4)* | |
H9B | 0.5666 (17) | 0.216 (2) | 0.4289 (14) | 0.032 (4)* | |
H10A | 0.2263 (17) | 0.1103 (19) | 0.3756 (13) | 0.027 (4)* | |
H10B | 0.3356 (15) | 0.0895 (19) | 0.4868 (14) | 0.028 (4)* | |
H11A | 0.3831 (15) | 0.445 (2) | 0.2857 (13) | 0.026 (4)* | |
H11B | 0.4242 (15) | 0.2736 (18) | 0.2503 (12) | 0.023 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0368 (5) | 0.0255 (5) | 0.0214 (5) | 0.0064 (4) | 0.0068 (4) | 0.0042 (4) |
O2 | 0.0426 (6) | 0.0264 (6) | 0.0252 (5) | 0.0066 (5) | −0.0011 (4) | −0.0022 (4) |
O3 | 0.0462 (6) | 0.0203 (5) | 0.0231 (5) | 0.0069 (4) | 0.0036 (4) | −0.0034 (4) |
O4 | 0.0464 (7) | 0.0335 (6) | 0.0247 (5) | 0.0086 (5) | −0.0030 (4) | −0.0057 (5) |
N1 | 0.0294 (6) | 0.0191 (5) | 0.0183 (5) | 0.0007 (4) | 0.0060 (4) | −0.0015 (4) |
C1 | 0.0256 (6) | 0.0196 (6) | 0.0223 (6) | −0.0009 (5) | 0.0065 (5) | 0.0001 (5) |
C2 | 0.0281 (7) | 0.0210 (6) | 0.0230 (6) | −0.0001 (5) | 0.0079 (5) | 0.0020 (5) |
C3 | 0.0431 (9) | 0.0373 (8) | 0.0229 (7) | 0.0104 (7) | 0.0076 (6) | −0.0031 (6) |
C4 | 0.0434 (9) | 0.0332 (8) | 0.0351 (8) | 0.0111 (7) | 0.0100 (7) | −0.0079 (7) |
C5 | 0.0331 (8) | 0.0231 (7) | 0.0356 (8) | 0.0067 (6) | 0.0059 (6) | 0.0017 (6) |
C6 | 0.0298 (7) | 0.0245 (7) | 0.0227 (6) | 0.0000 (5) | 0.0045 (5) | 0.0022 (5) |
C7 | 0.0274 (7) | 0.0216 (6) | 0.0204 (6) | −0.0011 (5) | 0.0047 (5) | −0.0009 (5) |
C8 | 0.0273 (6) | 0.0183 (6) | 0.0196 (6) | 0.0007 (5) | 0.0067 (5) | −0.0026 (5) |
C9 | 0.0287 (7) | 0.0260 (7) | 0.0268 (7) | 0.0001 (6) | 0.0059 (6) | −0.0035 (6) |
C10 | 0.0340 (8) | 0.0197 (6) | 0.0242 (6) | −0.0007 (5) | 0.0074 (5) | −0.0020 (5) |
C11 | 0.0380 (8) | 0.0239 (7) | 0.0217 (6) | 0.0014 (6) | 0.0076 (6) | −0.0005 (5) |
Geometric parameters (Å, º) top
O1—C2 | 1.3025 (16) | C4—C5 | 1.401 (2) |
O2—C9 | 1.4166 (17) | C4—H4 | 0.94 (2) |
O2—H2O | 0.84 (2) | C5—C6 | 1.368 (2) |
O3—C10 | 1.4166 (16) | C5—H5 | 0.938 (19) |
O3—H3O | 0.91 (2) | C6—H6 | 0.945 (16) |
O4—C11 | 1.4196 (19) | C7—H7 | 0.957 (16) |
O4—H4O | 0.86 (2) | C8—C11 | 1.5283 (18) |
N1—C7 | 1.2952 (18) | C8—C9 | 1.535 (2) |
N1—C8 | 1.4741 (16) | C8—C10 | 1.5387 (19) |
N1—H1N | 0.915 (17) | C9—H9A | 1.009 (17) |
C1—C6 | 1.4113 (19) | C9—H9B | 0.951 (18) |
C1—C2 | 1.4276 (18) | C10—H10A | 1.011 (17) |
C1—C7 | 1.4290 (18) | C10—H10B | 0.986 (17) |
C2—C3 | 1.4158 (19) | C11—H11A | 1.009 (17) |
C3—C4 | 1.369 (2) | C11—H11B | 0.997 (16) |
C3—H3 | 0.973 (19) | | |
| | | |
C9—O2—H2O | 108.8 (14) | C1—C7—H7 | 119.3 (9) |
C10—O3—H3O | 106.7 (13) | N1—C8—C11 | 111.91 (11) |
C11—O4—H4O | 106.8 (15) | N1—C8—C9 | 106.12 (10) |
C7—N1—C8 | 127.74 (11) | C11—C8—C9 | 108.00 (11) |
C7—N1—H1N | 114.8 (11) | N1—C8—C10 | 106.61 (10) |
C8—N1—H1N | 117.3 (11) | C11—C8—C10 | 113.27 (11) |
C6—C1—C2 | 120.10 (12) | C9—C8—C10 | 110.72 (11) |
C6—C1—C7 | 118.64 (12) | O2—C9—C8 | 112.27 (11) |
C2—C1—C7 | 121.22 (12) | O2—C9—H9A | 106.6 (9) |
O1—C2—C3 | 121.89 (12) | C8—C9—H9A | 108.8 (9) |
O1—C2—C1 | 121.22 (12) | O2—C9—H9B | 111.6 (10) |
C3—C2—C1 | 116.89 (12) | C8—C9—H9B | 109.2 (10) |
C4—C3—C2 | 121.18 (14) | H9A—C9—H9B | 108.2 (14) |
C4—C3—H3 | 120.4 (11) | O3—C10—C8 | 111.35 (11) |
C2—C3—H3 | 118.4 (11) | O3—C10—H10A | 111.2 (9) |
C3—C4—C5 | 121.86 (14) | C8—C10—H10A | 108.8 (9) |
C3—C4—H4 | 120.6 (12) | O3—C10—H10B | 108.9 (9) |
C5—C4—H4 | 117.5 (12) | C8—C10—H10B | 107.3 (10) |
C6—C5—C4 | 118.49 (14) | H10A—C10—H10B | 109.2 (13) |
C6—C5—H5 | 120.5 (11) | O4—C11—C8 | 113.74 (12) |
C4—C5—H5 | 121.0 (11) | O4—C11—H11A | 107.7 (9) |
C5—C6—C1 | 121.41 (13) | C8—C11—H11A | 106.9 (9) |
C5—C6—H6 | 119.8 (10) | O4—C11—H11B | 110.6 (9) |
C1—C6—H6 | 118.8 (10) | C8—C11—H11B | 107.8 (9) |
N1—C7—C1 | 123.15 (12) | H11A—C11—H11B | 109.9 (13) |
N1—C7—H7 | 117.5 (9) | | |
| | | |
C6—C1—C2—O1 | 178.12 (12) | C2—C1—C7—N1 | 0.3 (2) |
C7—C1—C2—O1 | −4.3 (2) | C7—N1—C8—C11 | 14.74 (19) |
C6—C1—C2—C3 | −2.8 (2) | C7—N1—C8—C9 | 132.31 (14) |
C7—C1—C2—C3 | 174.79 (13) | C7—N1—C8—C10 | −109.61 (15) |
O1—C2—C3—C4 | −179.43 (15) | N1—C8—C9—O2 | 44.58 (14) |
C1—C2—C3—C4 | 1.5 (2) | C11—C8—C9—O2 | 164.73 (11) |
C2—C3—C4—C5 | 1.0 (3) | C10—C8—C9—O2 | −70.73 (14) |
C3—C4—C5—C6 | −2.1 (3) | N1—C8—C10—O3 | −175.90 (10) |
C4—C5—C6—C1 | 0.7 (2) | C11—C8—C10—O3 | 60.59 (15) |
C2—C1—C6—C5 | 1.7 (2) | C9—C8—C10—O3 | −60.90 (14) |
C7—C1—C6—C5 | −175.90 (13) | N1—C8—C11—O4 | −67.18 (15) |
C8—N1—C7—C1 | −173.88 (12) | C9—C8—C11—O4 | 176.38 (11) |
C6—C1—C7—N1 | 177.91 (13) | C10—C8—C11—O4 | 53.38 (16) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.915 (17) | 1.865 (17) | 2.6181 (14) | 138.1 (15) |
O2—H2O···O3i | 0.84 (2) | 1.89 (2) | 2.7314 (15) | 177 (2) |
O3—H3O···O1ii | 0.91 (2) | 1.74 (2) | 2.6426 (14) | 172 (2) |
O4—H4O···O1ii | 0.86 (2) | 1.90 (2) | 2.7254 (15) | 161 (2) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, −y+1/2, z−1/2. |
(II) 6-hydroxy-2-{[tris(hydroxymethyl)methyl]aminomethylene}cyclohexa-3,5-dien- 1(2
H)-one
top
Crystal data top
C11H15NO5 | F(000) = 512 |
Mr = 241.24 | Dx = 1.485 Mg m−3 |
Monoclinic, P21/c | Melting point = 415–417 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 9.6807 (17) Å | Cell parameters from 560 reflections |
b = 11.793 (2) Å | θ = 2.5–29.3° |
c = 9.8373 (18) Å | µ = 0.12 mm−1 |
β = 106.110 (3)° | T = 223 K |
V = 1078.9 (3) Å3 | Prism, colourless |
Z = 4 | 0.25 × 0.25 × 0.10 mm |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2258 independent reflections |
Radiation source: fine-focus sealed tube | 1972 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ω scans | θmax = 26.6°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Blessing, 1995) | h = −12→10 |
Tmin = 0.971, Tmax = 0.988 | k = −14→13 |
6019 measured reflections | l = −11→12 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.103 | All H-atom parameters refined |
S = 1.09 | w = 1/[σ2(Fo2) + (0.051P)2 + 0.326P] where P = (Fo2 + 2Fc2)/3 |
2258 reflections | (Δ/σ)max < 0.001 |
214 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
Crystal data top
C11H15NO5 | V = 1078.9 (3) Å3 |
Mr = 241.24 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.6807 (17) Å | µ = 0.12 mm−1 |
b = 11.793 (2) Å | T = 223 K |
c = 9.8373 (18) Å | 0.25 × 0.25 × 0.10 mm |
β = 106.110 (3)° | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2258 independent reflections |
Absorption correction: multi-scan (SADABS; Blessing, 1995) | 1972 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.988 | Rint = 0.029 |
6019 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.103 | All H-atom parameters refined |
S = 1.09 | Δρmax = 0.18 e Å−3 |
2258 reflections | Δρmin = −0.25 e Å−3 |
214 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.82522 (11) | 0.59478 (9) | 0.55685 (10) | 0.0271 (3) | |
O2 | 0.95517 (12) | 0.32126 (9) | 0.15492 (12) | 0.0307 (3) | |
O3 | 1.03815 (12) | 0.59002 (9) | 0.31064 (12) | 0.0297 (3) | |
O4 | 0.63913 (12) | 0.57956 (11) | −0.01010 (12) | 0.0347 (3) | |
O5 | 0.74232 (13) | 0.67352 (9) | 0.77973 (11) | 0.0302 (3) | |
N1 | 0.75693 (13) | 0.53522 (10) | 0.29369 (12) | 0.0226 (3) | |
C1 | 0.58362 (15) | 0.60323 (11) | 0.40442 (14) | 0.0224 (3) | |
C2 | 0.69014 (15) | 0.61847 (11) | 0.53614 (14) | 0.0221 (3) | |
C3 | 0.64182 (16) | 0.66043 (12) | 0.65118 (14) | 0.0233 (3) | |
C4 | 0.50029 (17) | 0.68423 (12) | 0.63639 (16) | 0.0267 (3) | |
C5 | 0.39633 (16) | 0.66842 (12) | 0.50537 (16) | 0.0266 (3) | |
C6 | 0.43763 (16) | 0.62793 (12) | 0.39208 (16) | 0.0250 (3) | |
C7 | 0.62428 (15) | 0.55787 (12) | 0.28653 (15) | 0.0233 (3) | |
C8 | 0.81826 (14) | 0.48586 (12) | 0.18571 (14) | 0.0215 (3) | |
C9 | 0.87055 (16) | 0.36642 (12) | 0.24005 (16) | 0.0247 (3) | |
C10 | 0.94335 (16) | 0.56280 (12) | 0.17637 (15) | 0.0261 (3) | |
C11 | 0.70751 (16) | 0.47559 (14) | 0.04146 (15) | 0.0275 (3) | |
H1N | 0.820 (2) | 0.5531 (17) | 0.376 (2) | 0.044 (5)* | |
H2O | 0.949 (2) | 0.250 (2) | 0.158 (2) | 0.056 (6)* | |
H3O | 1.090 (2) | 0.5297 (19) | 0.344 (2) | 0.052 (6)* | |
H4 | 0.4725 (19) | 0.7116 (15) | 0.7191 (19) | 0.032 (4)* | |
H4O | 0.683 (2) | 0.6094 (19) | −0.063 (2) | 0.054 (6)* | |
H5 | 0.2955 (19) | 0.6846 (14) | 0.4974 (18) | 0.026 (4)* | |
H5O | 0.829 (3) | 0.6636 (19) | 0.774 (2) | 0.057 (7)* | |
H6 | 0.364 (2) | 0.6157 (15) | 0.300 (2) | 0.037 (5)* | |
H7 | 0.553 (2) | 0.5427 (16) | 0.196 (2) | 0.041 (5)* | |
H9A | 0.7856 (19) | 0.3186 (14) | 0.2350 (18) | 0.028 (4)* | |
H9B | 0.9287 (18) | 0.3710 (14) | 0.3382 (19) | 0.027 (4)* | |
H10A | 0.9051 (18) | 0.6359 (14) | 0.1348 (18) | 0.025 (4)* | |
H10B | 0.9969 (19) | 0.5244 (15) | 0.1148 (18) | 0.033 (4)* | |
H11A | 0.6312 (18) | 0.4235 (14) | 0.0471 (17) | 0.025 (4)* | |
H11B | 0.760 (2) | 0.4438 (16) | −0.022 (2) | 0.035 (5)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0223 (5) | 0.0336 (6) | 0.0242 (5) | 0.0030 (4) | 0.0045 (4) | −0.0016 (4) |
O2 | 0.0332 (6) | 0.0231 (6) | 0.0378 (6) | 0.0029 (4) | 0.0133 (5) | −0.0039 (4) |
O3 | 0.0253 (6) | 0.0234 (5) | 0.0357 (6) | −0.0010 (4) | 0.0003 (4) | −0.0013 (4) |
O4 | 0.0311 (6) | 0.0448 (7) | 0.0293 (6) | 0.0096 (5) | 0.0099 (5) | 0.0114 (5) |
O5 | 0.0273 (6) | 0.0400 (6) | 0.0242 (5) | −0.0013 (5) | 0.0084 (4) | −0.0059 (4) |
N1 | 0.0233 (6) | 0.0250 (6) | 0.0187 (6) | 0.0009 (5) | 0.0048 (5) | −0.0014 (5) |
C1 | 0.0244 (7) | 0.0204 (6) | 0.0226 (7) | 0.0017 (5) | 0.0072 (5) | 0.0036 (5) |
C2 | 0.0237 (7) | 0.0186 (6) | 0.0248 (7) | 0.0017 (5) | 0.0077 (5) | 0.0028 (5) |
C3 | 0.0276 (7) | 0.0197 (6) | 0.0223 (7) | −0.0014 (5) | 0.0066 (5) | 0.0004 (5) |
C4 | 0.0316 (8) | 0.0219 (7) | 0.0304 (8) | −0.0010 (6) | 0.0150 (6) | −0.0017 (6) |
C5 | 0.0232 (7) | 0.0234 (7) | 0.0349 (8) | 0.0027 (6) | 0.0111 (6) | 0.0033 (6) |
C6 | 0.0238 (7) | 0.0239 (7) | 0.0267 (7) | 0.0004 (6) | 0.0060 (6) | 0.0044 (6) |
C7 | 0.0240 (7) | 0.0223 (7) | 0.0228 (7) | 0.0004 (5) | 0.0054 (6) | 0.0024 (5) |
C8 | 0.0212 (7) | 0.0233 (7) | 0.0207 (6) | 0.0011 (5) | 0.0066 (5) | −0.0014 (5) |
C9 | 0.0252 (7) | 0.0225 (7) | 0.0271 (7) | −0.0001 (6) | 0.0083 (6) | −0.0003 (5) |
C10 | 0.0276 (8) | 0.0242 (7) | 0.0269 (7) | −0.0017 (6) | 0.0083 (6) | 0.0009 (6) |
C11 | 0.0266 (8) | 0.0329 (8) | 0.0217 (7) | 0.0033 (6) | 0.0048 (6) | −0.0027 (6) |
Geometric parameters (Å, º) top
O1—C2 | 1.2968 (17) | C3—C4 | 1.366 (2) |
O2—C9 | 1.4271 (18) | C4—C5 | 1.410 (2) |
O2—H2O | 0.84 (2) | C4—H4 | 0.979 (19) |
O3—C10 | 1.4203 (18) | C5—C6 | 1.370 (2) |
O3—H3O | 0.88 (2) | C5—H5 | 0.976 (18) |
O4—C11 | 1.4185 (19) | C6—H6 | 1.000 (19) |
O4—H4O | 0.84 (2) | C7—H7 | 0.98 (2) |
O5—C3 | 1.3737 (18) | C8—C11 | 1.5276 (19) |
O5—H5O | 0.87 (3) | C8—C10 | 1.536 (2) |
N1—C7 | 1.2943 (19) | C8—C9 | 1.5414 (19) |
N1—C8 | 1.4730 (17) | C9—H9A | 0.987 (18) |
N1—H1N | 0.89 (2) | C9—H9B | 0.975 (17) |
C1—C6 | 1.415 (2) | C10—H10A | 0.981 (17) |
C1—C2 | 1.4258 (19) | C10—H10B | 1.007 (18) |
C1—C7 | 1.428 (2) | C11—H11A | 0.974 (17) |
C2—C3 | 1.4277 (19) | C11—H11B | 0.980 (19) |
| | | |
C9—O2—H2O | 107.0 (16) | N1—C7—H7 | 116.7 (12) |
C10—O3—H3O | 108.7 (14) | C1—C7—H7 | 121.6 (12) |
C11—O4—H4O | 108.6 (15) | N1—C8—C11 | 112.44 (11) |
C3—O5—H5O | 112.1 (16) | N1—C8—C10 | 106.97 (11) |
C7—N1—C8 | 129.40 (12) | C11—C8—C10 | 110.67 (12) |
C7—N1—H1N | 115.0 (13) | N1—C8—C9 | 105.68 (11) |
C8—N1—H1N | 115.6 (13) | C11—C8—C9 | 109.15 (12) |
C6—C1—C2 | 120.36 (13) | C10—C8—C9 | 111.84 (12) |
C6—C1—C7 | 120.08 (13) | O2—C9—C8 | 108.92 (11) |
C2—C1—C7 | 119.50 (13) | O2—C9—H9A | 111.3 (10) |
O1—C2—C1 | 124.00 (13) | C8—C9—H9A | 108.4 (10) |
O1—C2—C3 | 119.21 (13) | O2—C9—H9B | 109.5 (10) |
C1—C2—C3 | 116.78 (13) | C8—C9—H9B | 109.7 (10) |
C4—C3—O5 | 120.54 (13) | H9A—C9—H9B | 109.0 (14) |
C4—C3—C2 | 121.76 (13) | O3—C10—C8 | 113.23 (12) |
O5—C3—C2 | 117.68 (13) | O3—C10—H10A | 105.1 (10) |
C3—C4—C5 | 120.69 (14) | C8—C10—H10A | 109.3 (10) |
C3—C4—H4 | 118.5 (11) | O3—C10—H10B | 110.7 (10) |
C5—C4—H4 | 120.8 (11) | C8—C10—H10B | 108.4 (10) |
C6—C5—C4 | 119.61 (14) | H10A—C10—H10B | 110.0 (14) |
C6—C5—H5 | 120.9 (10) | O4—C11—C8 | 113.65 (12) |
C4—C5—H5 | 119.4 (10) | O4—C11—H11A | 106.2 (10) |
C5—C6—C1 | 120.79 (14) | C8—C11—H11A | 110.2 (10) |
C5—C6—H6 | 119.6 (11) | O4—C11—H11B | 112.0 (11) |
C1—C6—H6 | 119.6 (11) | C8—C11—H11B | 105.6 (11) |
N1—C7—C1 | 121.74 (13) | H11A—C11—H11B | 109.2 (15) |
| | | |
C6—C1—C2—O1 | 178.02 (13) | C6—C1—C7—N1 | 179.38 (13) |
C7—C1—C2—O1 | 0.9 (2) | C2—C1—C7—N1 | −3.5 (2) |
C6—C1—C2—C3 | −0.75 (19) | C7—N1—C8—C11 | 8.4 (2) |
C7—C1—C2—C3 | −177.88 (12) | C7—N1—C8—C10 | 130.12 (15) |
O1—C2—C3—C4 | −178.41 (13) | C7—N1—C8—C9 | −110.56 (16) |
C1—C2—C3—C4 | 0.4 (2) | N1—C8—C9—O2 | −169.27 (11) |
O1—C2—C3—O5 | −0.12 (19) | C11—C8—C9—O2 | 69.58 (15) |
C1—C2—C3—O5 | 178.71 (12) | C10—C8—C9—O2 | −53.22 (15) |
O5—C3—C4—C5 | −178.54 (13) | N1—C8—C10—O3 | 47.88 (15) |
C2—C3—C4—C5 | −0.3 (2) | C11—C8—C10—O3 | 170.69 (12) |
C3—C4—C5—C6 | 0.5 (2) | C9—C8—C10—O3 | −67.38 (15) |
C4—C5—C6—C1 | −0.9 (2) | N1—C8—C11—O4 | 55.60 (17) |
C2—C1—C6—C5 | 1.0 (2) | C10—C8—C11—O4 | −63.97 (16) |
C7—C1—C6—C5 | 178.11 (13) | C9—C8—C11—O4 | 172.53 (12) |
C8—N1—C7—C1 | 178.20 (13) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.89 (2) | 1.84 (2) | 2.5851 (16) | 140.0 (18) |
O2—H2O···O3i | 0.84 (2) | 1.91 (3) | 2.7465 (16) | 171 (2) |
O3—H3O···O1ii | 0.88 (2) | 1.83 (2) | 2.6910 (15) | 167 (2) |
O4—H4O···O5iii | 0.84 (2) | 1.95 (3) | 2.7652 (17) | 167 (2) |
O5—H5O···O2ii | 0.87 (3) | 2.02 (3) | 2.8193 (17) | 153 (2) |
O5—H5O···O1 | 0.87 (3) | 2.27 (2) | 2.7000 (15) | 110.3 (19) |
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) −x+2, −y+1, −z+1; (iii) x, y, z−1. |
(III) 6-methoxy-2-{[tris(hydroxymethyl)methyl]aminomethylene}cyclohexa-3,5-dien- 1(2
H)-one
top
Crystal data top
C12H17NO5 | Dx = 1.418 Mg m−3 |
Mr = 255.27 | Melting point = 454–455 K |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 720 reflections |
a = 10.6464 (7) Å | θ = 2.2–27.6° |
b = 10.7749 (7) Å | µ = 0.11 mm−1 |
c = 20.8540 (13) Å | T = 213 K |
V = 2392.2 (3) Å3 | Needle, colourless |
Z = 8 | 0.30 × 0.30 × 0.03 mm |
F(000) = 1088 | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2744 independent reflections |
Radiation source: fine-focus sealed tube | 2241 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
ω scans | θmax = 27.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Blessing, 1995) | h = −6→13 |
Tmin = 0.968, Tmax = 0.997 | k = −13→14 |
12603 measured reflections | l = −26→27 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.105 | All H-atom parameters refined |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0476P)2 + 0.9405P] where P = (Fo2 + 2Fc2)/3 |
2744 reflections | (Δ/σ)max = 0.004 |
231 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
Crystal data top
C12H17NO5 | V = 2392.2 (3) Å3 |
Mr = 255.27 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 10.6464 (7) Å | µ = 0.11 mm−1 |
b = 10.7749 (7) Å | T = 213 K |
c = 20.8540 (13) Å | 0.30 × 0.30 × 0.03 mm |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2744 independent reflections |
Absorption correction: multi-scan (SADABS; Blessing, 1995) | 2241 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.997 | Rint = 0.036 |
12603 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.105 | All H-atom parameters refined |
S = 1.07 | Δρmax = 0.27 e Å−3 |
2744 reflections | Δρmin = −0.21 e Å−3 |
231 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.59626 (10) | 0.09299 (10) | 0.61618 (5) | 0.0270 (3) | |
O5 | 0.36871 (11) | 0.09491 (11) | 0.66751 (6) | 0.0335 (3) | |
O2 | 0.77267 (10) | 0.08388 (10) | 0.47120 (6) | 0.0268 (3) | |
H2O | 0.705 (2) | 0.100 (2) | 0.4521 (11) | 0.055 (7)* | |
O3 | 1.09930 (11) | 0.13505 (11) | 0.52213 (6) | 0.0339 (3) | |
H3O | 1.140 (2) | 0.070 (2) | 0.5281 (10) | 0.046 (6)* | |
O4 | 1.03769 (10) | 0.38666 (11) | 0.58199 (6) | 0.0281 (3) | |
H4O | 1.010 (2) | 0.455 (2) | 0.5969 (9) | 0.043 (6)* | |
N1 | 0.78960 (11) | 0.22397 (12) | 0.57913 (6) | 0.0214 (3) | |
H1N | 0.741 (2) | 0.1549 (19) | 0.5784 (9) | 0.042 (5)* | |
C1 | 0.64296 (14) | 0.29492 (14) | 0.65720 (7) | 0.0226 (3) | |
C2 | 0.56490 (13) | 0.18755 (14) | 0.65051 (7) | 0.0215 (3) | |
C3 | 0.44500 (14) | 0.19299 (15) | 0.68238 (7) | 0.0254 (3) | |
C4 | 0.41485 (16) | 0.28899 (17) | 0.72215 (8) | 0.0328 (4) | |
H4 | 0.333 (2) | 0.2873 (19) | 0.7451 (11) | 0.053 (6)* | |
C5 | 0.49735 (17) | 0.38915 (17) | 0.73158 (9) | 0.0369 (4) | |
H5 | 0.476 (2) | 0.4539 (19) | 0.7602 (10) | 0.046 (6)* | |
C6 | 0.60765 (16) | 0.39349 (16) | 0.69873 (8) | 0.0313 (4) | |
H6 | 0.6633 (18) | 0.4618 (19) | 0.7027 (9) | 0.041 (5)* | |
C12 | 0.23936 (17) | 0.1071 (2) | 0.68447 (10) | 0.0401 (4) | |
H12A | 0.203 (2) | 0.188 (2) | 0.6663 (10) | 0.047 (6)* | |
H12B | 0.2279 (19) | 0.1055 (18) | 0.7307 (10) | 0.041 (5)* | |
H12C | 0.201 (2) | 0.033 (2) | 0.6650 (10) | 0.045 (6)* | |
C7 | 0.75333 (14) | 0.30753 (14) | 0.61983 (7) | 0.0228 (3) | |
H7 | 0.8017 (15) | 0.3814 (15) | 0.6239 (8) | 0.021 (4)* | |
C8 | 0.89788 (13) | 0.22774 (13) | 0.53555 (7) | 0.0205 (3) | |
C9 | 0.85050 (15) | 0.19195 (15) | 0.46847 (7) | 0.0242 (3) | |
H9A | 0.8027 (15) | 0.2610 (16) | 0.4508 (8) | 0.022 (4)* | |
H9B | 0.9239 (17) | 0.1733 (16) | 0.4419 (8) | 0.028 (4)* | |
C10 | 0.99173 (14) | 0.13295 (14) | 0.56173 (8) | 0.0244 (3) | |
H10A | 0.9516 (15) | 0.0508 (16) | 0.5619 (8) | 0.022 (4)* | |
H10B | 1.0105 (17) | 0.1558 (16) | 0.6056 (9) | 0.029 (5)* | |
C11 | 0.95707 (14) | 0.35666 (14) | 0.52966 (7) | 0.0232 (3) | |
H11A | 0.8904 (17) | 0.4179 (16) | 0.5254 (8) | 0.026 (4)* | |
H11B | 1.0061 (17) | 0.3567 (16) | 0.4901 (8) | 0.026 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0229 (6) | 0.0235 (5) | 0.0347 (6) | −0.0018 (4) | 0.0047 (5) | −0.0051 (4) |
O5 | 0.0220 (6) | 0.0349 (7) | 0.0437 (7) | −0.0055 (5) | 0.0054 (5) | −0.0012 (5) |
O2 | 0.0185 (5) | 0.0242 (6) | 0.0376 (6) | 0.0006 (4) | −0.0051 (5) | −0.0036 (5) |
O3 | 0.0195 (6) | 0.0271 (6) | 0.0551 (8) | 0.0062 (5) | 0.0073 (5) | 0.0035 (6) |
O4 | 0.0208 (5) | 0.0224 (6) | 0.0410 (6) | −0.0006 (4) | 0.0000 (5) | −0.0076 (5) |
N1 | 0.0164 (6) | 0.0211 (6) | 0.0266 (6) | −0.0017 (5) | 0.0014 (5) | −0.0007 (5) |
C1 | 0.0184 (7) | 0.0249 (7) | 0.0245 (7) | 0.0008 (6) | −0.0016 (6) | −0.0020 (6) |
C2 | 0.0190 (7) | 0.0249 (7) | 0.0206 (7) | 0.0021 (6) | −0.0012 (5) | 0.0001 (6) |
C3 | 0.0208 (7) | 0.0294 (8) | 0.0259 (7) | −0.0006 (6) | −0.0008 (6) | 0.0023 (6) |
C4 | 0.0234 (8) | 0.0435 (10) | 0.0316 (8) | 0.0031 (7) | 0.0060 (7) | −0.0042 (7) |
C5 | 0.0322 (9) | 0.0412 (10) | 0.0374 (9) | 0.0054 (8) | 0.0036 (8) | −0.0164 (8) |
C6 | 0.0262 (8) | 0.0307 (9) | 0.0370 (9) | −0.0004 (7) | −0.0014 (7) | −0.0118 (7) |
C12 | 0.0220 (8) | 0.0531 (12) | 0.0453 (11) | −0.0062 (8) | 0.0034 (8) | 0.0057 (9) |
C7 | 0.0190 (7) | 0.0222 (7) | 0.0273 (7) | −0.0005 (6) | −0.0029 (6) | −0.0018 (6) |
C8 | 0.0149 (6) | 0.0190 (7) | 0.0275 (7) | 0.0001 (5) | 0.0018 (6) | 0.0001 (6) |
C9 | 0.0203 (7) | 0.0249 (8) | 0.0275 (7) | 0.0008 (6) | 0.0007 (6) | −0.0004 (6) |
C10 | 0.0184 (7) | 0.0211 (7) | 0.0336 (8) | 0.0009 (6) | −0.0006 (6) | 0.0005 (6) |
C11 | 0.0203 (7) | 0.0197 (7) | 0.0297 (8) | −0.0008 (6) | 0.0025 (6) | 0.0008 (6) |
Geometric parameters (Å, º) top
O1—C2 | 1.2892 (18) | C4—H4 | 1.00 (2) |
O5—C3 | 1.3684 (19) | C5—C6 | 1.360 (3) |
O5—C12 | 1.428 (2) | C5—H5 | 0.95 (2) |
O2—C9 | 1.4304 (19) | C6—H6 | 0.95 (2) |
O2—H2O | 0.84 (2) | C12—H12A | 1.02 (2) |
O3—C10 | 1.4121 (19) | C12—H12B | 0.97 (2) |
O3—H3O | 0.83 (2) | C12—H12C | 0.98 (2) |
O4—C11 | 1.4254 (19) | C7—H7 | 0.952 (17) |
O4—H4O | 0.85 (2) | C8—C10 | 1.529 (2) |
N1—C7 | 1.2962 (19) | C8—C11 | 1.530 (2) |
N1—C8 | 1.4685 (18) | C8—C9 | 1.536 (2) |
N1—H1N | 0.91 (2) | C9—H9A | 0.974 (17) |
C1—C7 | 1.417 (2) | C9—H9B | 0.979 (18) |
C1—C6 | 1.421 (2) | C10—H10A | 0.983 (17) |
C1—C2 | 1.431 (2) | C10—H10B | 0.969 (18) |
C2—C3 | 1.440 (2) | C11—H11A | 0.973 (18) |
C3—C4 | 1.364 (2) | C11—H11B | 0.976 (18) |
C4—C5 | 1.405 (3) | | |
| | | |
C3—O5—C12 | 116.44 (14) | H12A—C12—H12C | 112.1 (17) |
C9—O2—H2O | 107.9 (16) | H12B—C12—H12C | 110.2 (17) |
C10—O3—H3O | 108.8 (15) | N1—C7—C1 | 122.73 (14) |
C11—O4—H4O | 105.3 (14) | N1—C7—H7 | 118.6 (10) |
C7—N1—C8 | 128.31 (13) | C1—C7—H7 | 118.7 (10) |
C7—N1—H1N | 114.3 (13) | N1—C8—C10 | 105.87 (12) |
C8—N1—H1N | 117.4 (13) | N1—C8—C11 | 113.45 (12) |
C7—C1—C6 | 118.89 (14) | C10—C8—C11 | 111.46 (12) |
C7—C1—C2 | 120.37 (13) | N1—C8—C9 | 107.39 (12) |
C6—C1—C2 | 120.66 (14) | C10—C8—C9 | 111.83 (12) |
O1—C2—C1 | 122.85 (13) | C11—C8—C9 | 106.86 (12) |
O1—C2—C3 | 121.20 (13) | O2—C9—C8 | 111.00 (12) |
C1—C2—C3 | 115.89 (13) | O2—C9—H9A | 109.5 (10) |
C4—C3—O5 | 125.71 (14) | C8—C9—H9A | 109.0 (10) |
C4—C3—C2 | 121.33 (15) | O2—C9—H9B | 108.5 (10) |
O5—C3—C2 | 112.95 (13) | C8—C9—H9B | 107.8 (10) |
C3—C4—C5 | 121.35 (15) | H9A—C9—H9B | 111.1 (14) |
C3—C4—H4 | 119.0 (12) | O3—C10—C8 | 108.09 (12) |
C5—C4—H4 | 119.7 (12) | O3—C10—H10A | 111.7 (9) |
C6—C5—C4 | 119.71 (16) | C8—C10—H10A | 108.6 (10) |
C6—C5—H5 | 120.1 (13) | O3—C10—H10B | 112.4 (11) |
C4—C5—H5 | 120.2 (13) | C8—C10—H10B | 107.6 (10) |
C5—C6—C1 | 120.64 (16) | H10A—C10—H10B | 108.3 (14) |
C5—C6—H6 | 121.4 (12) | O4—C11—C8 | 113.10 (12) |
C1—C6—H6 | 117.9 (12) | O4—C11—H11A | 110.8 (10) |
O5—C12—H12A | 110.4 (12) | C8—C11—H11A | 108.8 (10) |
O5—C12—H12B | 111.4 (12) | O4—C11—H11B | 108.9 (11) |
H12A—C12—H12B | 109.6 (16) | C8—C11—H11B | 106.8 (10) |
O5—C12—H12C | 103.0 (12) | H11A—C11—H11B | 108.2 (14) |
| | | |
C7—C1—C2—O1 | 7.3 (2) | C8—N1—C7—C1 | 176.92 (13) |
C6—C1—C2—O1 | −176.11 (14) | C6—C1—C7—N1 | −177.47 (15) |
C7—C1—C2—C3 | −169.99 (13) | C2—C1—C7—N1 | −0.8 (2) |
C6—C1—C2—C3 | 6.6 (2) | C7—N1—C8—C10 | 109.76 (16) |
C12—O5—C3—C4 | 13.4 (2) | C7—N1—C8—C11 | −12.8 (2) |
C12—O5—C3—C2 | −165.76 (14) | C7—N1—C8—C9 | −130.63 (15) |
O1—C2—C3—C4 | 175.58 (15) | N1—C8—C9—O2 | −46.88 (16) |
C1—C2—C3—C4 | −7.1 (2) | C10—C8—C9—O2 | 68.86 (16) |
O1—C2—C3—O5 | −5.2 (2) | C11—C8—C9—O2 | −168.92 (12) |
C1—C2—C3—O5 | 172.15 (13) | N1—C8—C10—O3 | −178.68 (12) |
O5—C3—C4—C5 | −176.39 (16) | C11—C8—C10—O3 | −54.88 (16) |
C2—C3—C4—C5 | 2.7 (3) | C9—C8—C10—O3 | 64.66 (16) |
C3—C4—C5—C6 | 2.5 (3) | N1—C8—C11—O4 | 79.70 (15) |
C4—C5—C6—C1 | −2.9 (3) | C10—C8—C11—O4 | −39.70 (17) |
C7—C1—C6—C5 | 174.82 (16) | C9—C8—C11—O4 | −162.15 (12) |
C2—C1—C6—C5 | −1.8 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.91 (2) | 1.85 (2) | 2.6125 (16) | 139.7 (18) |
O2—H2O···O4i | 0.84 (2) | 1.92 (2) | 2.7549 (16) | 170 (2) |
O3—H3O···O2ii | 0.83 (2) | 1.91 (2) | 2.7280 (17) | 171 (2) |
O4—H4O···O1iii | 0.85 (2) | 1.91 (2) | 2.7359 (16) | 163 (2) |
O4—H4O···O5iii | 0.85 (2) | 2.47 (2) | 3.0346 (16) | 124.1 (17) |
Symmetry codes: (i) x−1/2, −y+1/2, −z+1; (ii) −x+2, −y, −z+1; (iii) −x+3/2, y+1/2, z. |
Experimental details
| (I) | (II) | (III) |
Crystal data |
Chemical formula | C11H15NO4 | C11H15NO5 | C12H17NO5 |
Mr | 225.24 | 241.24 | 255.27 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c | Orthorhombic, Pbca |
Temperature (K) | 208 | 223 | 213 |
a, b, c (Å) | 10.4437 (9), 8.7029 (7), 12.6147 (11) | 9.6807 (17), 11.793 (2), 9.8373 (18) | 10.6464 (7), 10.7749 (7), 20.8540 (13) |
α, β, γ (°) | 90, 101.801 (2), 90 | 90, 106.110 (3), 90 | 90, 90, 90 |
V (Å3) | 1122.32 (16) | 1078.9 (3) | 2392.2 (3) |
Z | 4 | 4 | 8 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.12 | 0.11 |
Crystal size (mm) | 0.30 × 0.30 × 0.30 | 0.25 × 0.25 × 0.10 | 0.30 × 0.30 × 0.03 |
|
Data collection |
Diffractometer | Bruker SMART CCD area-detector diffractometer | Bruker SMART CCD area-detector diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | – | Multi-scan (SADABS; Blessing, 1995) | Multi-scan (SADABS; Blessing, 1995) |
Tmin, Tmax | – | 0.971, 0.988 | 0.968, 0.997 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12824, 2701, 2226 | 6019, 2258, 1972 | 12603, 2744, 2241 |
Rint | 0.039 | 0.029 | 0.036 |
(sin θ/λ)max (Å−1) | 0.660 | 0.630 | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.111, 1.10 | 0.040, 0.103, 1.09 | 0.046, 0.105, 1.07 |
No. of reflections | 2701 | 2258 | 2744 |
No. of parameters | 206 | 214 | 231 |
H-atom treatment | All H-atom parameters refined | All H-atom parameters refined | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.38, −0.19 | 0.18, −0.25 | 0.27, −0.21 |
Selected geometric parameters (Å, º) for (I) topO1—C2 | 1.3025 (16) | C1—C7 | 1.4290 (18) |
N1—C7 | 1.2952 (18) | C2—C3 | 1.4158 (19) |
N1—C8 | 1.4741 (16) | C3—C4 | 1.369 (2) |
C1—C6 | 1.4113 (19) | C4—C5 | 1.401 (2) |
C1—C2 | 1.4276 (18) | C5—C6 | 1.368 (2) |
| | | |
C6—C1—C7 | 118.64 (12) | O1—C2—C1 | 121.22 (12) |
C2—C1—C7 | 121.22 (12) | N1—C7—C1 | 123.15 (12) |
O1—C2—C3 | 121.89 (12) | | |
| | | |
C6—C1—C2—O1 | 178.12 (12) | C2—C1—C7—N1 | 0.3 (2) |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.915 (17) | 1.865 (17) | 2.6181 (14) | 138.1 (15) |
O2—H2O···O3i | 0.84 (2) | 1.89 (2) | 2.7314 (15) | 177 (2) |
O3—H3O···O1ii | 0.91 (2) | 1.74 (2) | 2.6426 (14) | 172 (2) |
O4—H4O···O1ii | 0.86 (2) | 1.90 (2) | 2.7254 (15) | 161 (2) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, −y+1/2, z−1/2. |
Selected geometric parameters (Å, º) for (II) topO1—C2 | 1.2968 (17) | C1—C7 | 1.428 (2) |
O5—C3 | 1.3737 (18) | C2—C3 | 1.4277 (19) |
N1—C7 | 1.2943 (19) | C3—C4 | 1.366 (2) |
N1—C8 | 1.4730 (17) | C4—C5 | 1.410 (2) |
C1—C6 | 1.415 (2) | C5—C6 | 1.370 (2) |
C1—C2 | 1.4258 (19) | | |
| | | |
C6—C1—C7 | 120.08 (13) | O1—C2—C3 | 119.21 (13) |
C2—C1—C7 | 119.50 (13) | N1—C7—C1 | 121.74 (13) |
O1—C2—C1 | 124.00 (13) | | |
| | | |
C7—C1—C2—O1 | 0.9 (2) | C2—C1—C7—N1 | −3.5 (2) |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.89 (2) | 1.84 (2) | 2.5851 (16) | 140.0 (18) |
O2—H2O···O3i | 0.84 (2) | 1.91 (3) | 2.7465 (16) | 171 (2) |
O3—H3O···O1ii | 0.88 (2) | 1.83 (2) | 2.6910 (15) | 167 (2) |
O4—H4O···O5iii | 0.84 (2) | 1.95 (3) | 2.7652 (17) | 167 (2) |
O5—H5O···O2ii | 0.87 (3) | 2.02 (3) | 2.8193 (17) | 153 (2) |
O5—H5O···O1 | 0.87 (3) | 2.27 (2) | 2.7000 (15) | 110.3 (19) |
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) −x+2, −y+1, −z+1; (iii) x, y, z−1. |
Selected geometric parameters (Å, º) for (III) topO1—C2 | 1.2892 (18) | C1—C2 | 1.431 (2) |
O5—C3 | 1.3684 (19) | C2—C3 | 1.440 (2) |
N1—C7 | 1.2962 (19) | C3—C4 | 1.364 (2) |
N1—C8 | 1.4685 (18) | C4—C5 | 1.405 (3) |
C1—C7 | 1.417 (2) | C5—C6 | 1.360 (3) |
C1—C6 | 1.421 (2) | | |
| | | |
C7—C1—C6 | 118.89 (14) | O1—C2—C3 | 121.20 (13) |
C7—C1—C2 | 120.37 (13) | N1—C7—C1 | 122.73 (14) |
O1—C2—C1 | 122.85 (13) | | |
| | | |
C7—C1—C2—O1 | 7.3 (2) | C2—C1—C7—N1 | −0.8 (2) |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.91 (2) | 1.85 (2) | 2.6125 (16) | 139.7 (18) |
O2—H2O···O4i | 0.84 (2) | 1.92 (2) | 2.7549 (16) | 170 (2) |
O3—H3O···O2ii | 0.83 (2) | 1.91 (2) | 2.7280 (17) | 171 (2) |
O4—H4O···O1iii | 0.85 (2) | 1.91 (2) | 2.7359 (16) | 163 (2) |
O4—H4O···O5iii | 0.85 (2) | 2.47 (2) | 3.0346 (16) | 124.1 (17) |
Symmetry codes: (i) x−1/2, −y+1/2, −z+1; (ii) −x+2, −y, −z+1; (iii) −x+3/2, y+1/2, z. |
There is considerable interest in Schiff base ligands and their complexes with regard to their striking antitumour activities (Zhou et al., 2000). Among them, o-hydroxy Schiff base ligands and their complexes derived from the reaction of o-hydroxy aldehydes with aniline have been extensively studied (Steward & Lingafelter, 1959; Calligaris et al., 1972; Maslen & Waters, 1975) and a number of them have been used as models for biological systems (Costamagna et al., 1992, 1998). o-Hydroxy Schiff bases exist as enol (Yıldız et al., 1998; Elmalı et al., 1998, 1999; Elmalı & Elerman, 1998; Dey et al., 2001; Ünver, Yıldız et al., 2002; Yang & Vittal, 2003) or keto (Ünver, Kabak et al., 2002; Hökelek et al., 2000), or as enol/keto mixtures (Nazır et al., 2000; Szady-Chelmienicecka et al., 2001; Ogawa & Harada, 2003) as a result of H-atom transfer from the hydroxy O atom to the N atom. Such H-atom tautomerism plays an important role in many fields of chemistry and especially biochemistry (Zollinger, 1991; Hem et al., 2002). Molecules giving tautomers by intramolecular H-atom transfer are often used as laser dyes, in high-energy radiation detectors and molecular memory storage devices, as fluorescent probes and as polymer protectors (Sytnik & Del Valle, 1995; Nagaoka et al., 1983). Many o-hydroxyarylidene anilines, being relatively simple in structure and exhibiting intramolecular H-atom transfer, have, therefore, attracted considerable attention from both experimental (Kownacki et al., 1994; Grabowska et al., 1994; Guha et al., 2000; Ogawa et al., 2001) and theoretical (Zgierski & Grabowska, 2000) points of view. N-substituted o-hydroxy imines have been reported to display thermo- and photochromism in the solid state by H-atom transfer from the hydroxy O atom to the N atom (Hadjoudis et al., 1987; Xu et al., 1994). In the course of our ongoing studies of the synthesis and structural characterization of polyhydroxyazomethine derivatives, the title compounds, (I), (II) and (III), were synthesized, and we report their crystal structures here. \sch
As shown in Scheme 2, o-hydroxyarylidene Schiff bases display two possible tautomeric forms, namely, the phenol-imine and the keto-amine. In the solid state, the keto-amine tautomer has been found in naphthaldimine (Hökelek et al., 2000; Ünver, Kabak et al., 2002), while phenol-imine is found in salicylaldimine Schiff bases (Kaitner & Pavlović, 1996; Yıldız et al., 1998; Elmalı et al., 1998, 1999; Elmalı & Elerman, 1998; Dey et al., 2001; Yang & Vittal, 2003; Karadayı et al., 2003). Compounds (I), (II) and (III) are polyhydroxysalicylaldimines and the present X-ray investigation indicates that the keto-amine tautomer is favoured over the phenol-imine tautomer. The crystal structure of (I) has been reported several times, most recently by Cungen et al. (2000) at room temperature. Scheme 2
A view of the hydrogen-bonded structure of (I), as determined at 208 K, and its numbering scheme are shown in Fig. 1. Selected bond distances and angles are listed in Table 1. Compound (I) has strong N—H···O intramolecular [N···O 2.6181 (14) Å] and O—H···O [mean O···O 2.700 Å] intermolecular hydrogen bonds. Such strong intramolecular N···O hydrogen bonds are a common feature of o-hydroxysalicylidene systems (Nazır et al., 2000; Yıldız et al., 1998). The sum of the van der Waals radii of O and N is 3.07 Å (Bondi, 1964), and the intramolecular hydrogen bond in (I) is shorter than this. Apart from the intramolecular hydrogen bond, (I) displays strong intermolecular O···O hydrogen bonds (Table 2). It has been reported Please check added text (Pizzala et al., 2000) that these hydrogen bonds are indeed characterized by relatively short O···O distances (shorter than the sum of the van der Waals radii of two O atoms, 3.04 Å).
The salicylidene ring bond lengths in (I) follow the alternating sequence C1—C2 > C2—C3 > C3—C4 < C4—C5 > C5—C6 < C6—C1. Compound (I) exists primarily as the keto-amine tautomer, as indicated by the C2—O1, C1—C7, C7—N and C1—C2 bond lengths (Table 1). These bonds are 1.356 (3), 1.448 (3), 1.270 (3) and 1.288 (4) Å, respectively, in the phenol-imine tautomer of 1,8-bis(N-2-oxyphenylsalicylidene)-3,6-dioxaoctane (Yıldız et al., 1998) and 1.286 (3), 1.441 (3), 1.297 (3) and 1.436 (3) Å, respectively, in the keto-amine tautomer of 4-[(3-chlorophenyl)diazenyl]-2-{[tris(hydroxymethyl)methyl] aminomethylene}cyclohexa-3,5-dien-1(2H)-one (Odabaşoğlu et al., 2003). Our investigation shows that there is an elongation of C7—N1 compared with the normal value of a C═N double bond (Reference?), and of C1—C2, C2—C3, C4—C5 and C6—C1 compared with the normal values for a salicylidene ring (Reference?). Furthermore, the formal hydroxyl H atom is located on atom N1, thus confirming a preference for the keto-amine tautomer (the quinoid form) in the solid state. Formation of the quinoid form results in electron-localization distortion and so the C3—C4 and C5—C6 bonds are shortened in comparison with their normal values in a salicylidene ring. The N—H···O hydrogen-bonded ring in (I) is almost planar and coupled with the cyclohexadiene ring, with an N1—C7—C1—C2 torsion angle of 0.3 (2)°.
Molecular views of (II) and (III), and their numbering schemes, are shown in Figs. 2 and 3, respectively, and selected bond distances and angles are listed in Tables 3 and 5, respectively. The structures of (II) and (III) are similar to that of (I), with small differences for some bond lengths due to the OH and CH3O groups attached to the cyclohexadiene ring (Tables 3 and 5). The O1—C2 bond lengths of 1.2968 (17) Å in (II) and 1.2892 (18) Å in (III) are somewhat shorter than the value of 1.3025 (16) Å in (I). Compound (II) has two strong intramolecular hydrogen bonds [N···O 2.5851 (16) and O···O 2.7000 (15) Å; Table 4].
Compounds (II) and (III), like compound (I), have strong intermolecular O···O hydrogen bonds (Tables 4 and 6). Atom O1 in (I) accepts two other H atoms from the alcoholic groups of adjacent molecules, viz. O1···O3iv and O1···O4iv [symmetry code: (iv) x, 1/2 − y, z + 1/2]. In (II), atom O1 accepts one H atom from the alcoholic group, O1···O3ii [symmetry code: (ii) 2 − x, −y, −z], and one from the phenolic group, O1···O5, but in (III), atom O1 accepts only one alcoholic H atom, O1···O4iii [symmetry code: (iii) 1/2 − x, 1/2 + y, z].
The N—H···O hydrogen-bonded rings in (II) and (III) are almost planar-coupled with the cyclohexadiene rings, with N1—C7—C1—C2 torsion angles of 3.63 (1) and 0.8 (2)°, respectively (Tables 3 and 5).