The title compound is a polymeric complex bridged by a phthalate dianion, {[Cd(C8H4O4)(C7H6N2)2(H2O)]·0.5H2O}n. The asymmetric unit contains two Cd complex units, and both CdII atoms have the same distorted octahedral coordination geometry. Each phthalate dianion bridges two Cd atoms through the two terminal carboxy groups, one in a monodentate fashion and the other in a chelating mode, thus forming zigzag polymeric chains; π–π stacking occurs between neighboring chains. The bond angle involving the chelating carboxy group is large, but the corresponding bond distance is normal. This implies the existence of an electrostatic interaction between the CdII atoms and the carboxy groups.
Supporting information
CCDC reference: 237917
An aqueous solution (20 ml) of benzimidazole (0.12 g, 1 mmol) and CdCl2·2H2O (0.22 g, 1 mmol) was mixed with an aqueous solution (15 ml) of phthalic acid (0.17 g, 1 mmol) and NaOH (0.08 g, 2 mmol) at room temperature. The mixture was refluxed for 3 h and filtered twice. Single crystals were obtained from the filtrate after four weeks.
H atoms on water molecules were located in a difference Fourier map and included with fixed positional and isotropic displacement parameters [Uiso(H) = 0.05 Å2]. Other H atoms were placed in calculated positions (C—H = 0.93 Å and N—H = 0.86 Å) and were included in the final cycles of refinement in riding mode, with Uiso(H) equal to 1.2Ueq of the bonded atoms.
Data collection: PROCESS-AUTO (Rigaku Corporation, 1998); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC and Rigaku Corporation, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
catena-Poly[[[aquabis(1
H-benzimidazole-
κN3)cadmium(II)]-µ-phthalato-
κ3O,
O':
O''] hemihydrate]
top
Crystal data top
[Cd(C8H4O4)(C7H6N2)2(H2O)]·0.5H2O | Z = 2 |
Mr = 1079.62 | F(000) = 1084 |
Triclinic, P1 | Dx = 1.707 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 12.2779 (12) Å | Cell parameters from 7404 reflections |
b = 13.9092 (12) Å | θ = 1.7–25.1° |
c = 14.2565 (13) Å | µ = 1.09 mm−1 |
α = 61.140 (1)° | T = 295 K |
β = 80.629 (2)° | Prism, colorless |
γ = 88.464 (1)° | 0.32 × 0.21 × 0.11 mm |
V = 2100.1 (3) Å3 | |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 7404 independent reflections |
Radiation source: fine-focus sealed tube | 6572 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
Detector resolution: 10.00 pixels mm-1 | θmax = 25.2°, θmin = 1.7° |
ω scans | h = −14→14 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −16→16 |
Tmin = 0.702, Tmax = 0.895 | l = −17→16 |
16098 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.024 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.060 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0279P)2 + 1.7003P] where P = (Fo2 + 2Fc2)/3 |
7404 reflections | (Δ/σ)max = 0.002 |
586 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
Crystal data top
[Cd(C8H4O4)(C7H6N2)2(H2O)]·0.5H2O | γ = 88.464 (1)° |
Mr = 1079.62 | V = 2100.1 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 12.2779 (12) Å | Mo Kα radiation |
b = 13.9092 (12) Å | µ = 1.09 mm−1 |
c = 14.2565 (13) Å | T = 295 K |
α = 61.140 (1)° | 0.32 × 0.21 × 0.11 mm |
β = 80.629 (2)° | |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 7404 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 6572 reflections with I > 2σ(I) |
Tmin = 0.702, Tmax = 0.895 | Rint = 0.017 |
16098 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.024 | 0 restraints |
wR(F2) = 0.060 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.31 e Å−3 |
7404 reflections | Δρmin = −0.41 e Å−3 |
586 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cd1 | −0.078142 (14) | 0.307363 (16) | 0.679410 (14) | 0.03158 (6) | |
Cd2 | 0.550413 (14) | 0.455306 (15) | 0.192041 (14) | 0.03038 (6) | |
O1 | 0.07370 (14) | 0.32424 (15) | 0.54107 (14) | 0.0354 (4) | |
O2 | −0.07428 (13) | 0.22181 (15) | 0.56940 (14) | 0.0348 (4) | |
O3 | 0.38339 (15) | 0.37370 (18) | 0.24636 (17) | 0.0464 (5) | |
O4 | 0.37898 (15) | 0.28312 (16) | 0.15442 (15) | 0.0430 (5) | |
O5 | −0.14597 (14) | 0.45657 (15) | 0.52653 (14) | 0.0346 (4) | |
O6 | 0.71989 (15) | 0.56487 (16) | 0.09835 (15) | 0.0411 (4) | |
O7 | 0.67126 (14) | 0.44490 (16) | 0.05169 (15) | 0.0392 (4) | |
O8 | 1.06513 (17) | 0.5184 (2) | −0.33076 (17) | 0.0552 (6) | |
O9 | 0.90252 (18) | 0.42500 (18) | −0.25629 (18) | 0.0532 (5) | |
O10 | 0.47785 (14) | 0.60802 (16) | 0.04273 (14) | 0.0395 (4) | |
N11 | −0.40868 (19) | 0.2290 (2) | 0.87925 (19) | 0.0446 (6) | |
H11 | −0.4574 | 0.2460 | 0.9186 | 0.054* | |
N13 | −0.24884 (17) | 0.23122 (18) | 0.78053 (17) | 0.0353 (5) | |
N21 | 0.1323 (2) | 0.1468 (3) | 0.9335 (2) | 0.0618 (8) | |
H21 | 0.1664 | 0.1505 | 0.9799 | 0.074* | |
N23 | 0.02512 (19) | 0.1954 (2) | 0.80876 (19) | 0.0450 (6) | |
N41 | 0.38445 (17) | 0.57871 (19) | 0.40469 (18) | 0.0367 (5) | |
H41 | 0.3230 | 0.5820 | 0.4415 | 0.044* | |
N43 | 0.50188 (16) | 0.53318 (18) | 0.29992 (17) | 0.0336 (5) | |
N51 | 0.75440 (17) | 0.24907 (19) | 0.44032 (19) | 0.0399 (5) | |
H51 | 0.7996 | 0.2453 | 0.4820 | 0.048* | |
N53 | 0.64488 (17) | 0.32138 (18) | 0.31696 (17) | 0.0362 (5) | |
C12 | −0.3060 (2) | 0.2741 (2) | 0.8363 (2) | 0.0407 (6) | |
H12 | −0.2776 | 0.3301 | 0.8448 | 0.049* | |
C14 | −0.3062 (2) | 0.0801 (2) | 0.7454 (2) | 0.0416 (6) | |
H14 | −0.2388 | 0.0797 | 0.7049 | 0.050* | |
C15 | −0.3942 (3) | 0.0095 (3) | 0.7654 (3) | 0.0529 (8) | |
H15 | −0.3861 | −0.0395 | 0.7381 | 0.063* | |
C16 | −0.4957 (3) | 0.0106 (3) | 0.8262 (3) | 0.0584 (9) | |
H16 | −0.5536 | −0.0379 | 0.8382 | 0.070* | |
C17 | −0.5121 (2) | 0.0804 (3) | 0.8683 (3) | 0.0521 (8) | |
H17 | −0.5799 | 0.0812 | 0.9079 | 0.063* | |
C18 | −0.4226 (2) | 0.1506 (2) | 0.8494 (2) | 0.0380 (6) | |
C19 | −0.3214 (2) | 0.1517 (2) | 0.7877 (2) | 0.0333 (5) | |
C22 | 0.0662 (3) | 0.2209 (3) | 0.8731 (3) | 0.0621 (9) | |
H22 | 0.0509 | 0.2850 | 0.8766 | 0.075* | |
C24 | 0.0584 (4) | 0.0308 (3) | 0.7798 (3) | 0.0758 (12) | |
H24 | 0.0143 | 0.0506 | 0.7268 | 0.091* | |
C25 | 0.1156 (5) | −0.0628 (3) | 0.8126 (4) | 0.1082 (19) | |
H25 | 0.1112 | −0.1061 | 0.7799 | 0.130* | |
C26 | 0.1806 (4) | −0.0950 (3) | 0.8942 (4) | 0.0923 (15) | |
H26 | 0.2172 | −0.1598 | 0.9155 | 0.111* | |
C27 | 0.1908 (3) | −0.0331 (3) | 0.9427 (3) | 0.0629 (9) | |
H27 | 0.2332 | −0.0545 | 0.9972 | 0.075* | |
C28 | 0.1354 (2) | 0.0639 (3) | 0.9077 (2) | 0.0469 (7) | |
C29 | 0.0686 (2) | 0.0953 (2) | 0.8285 (2) | 0.0443 (7) | |
C31 | 0.02340 (19) | 0.2608 (2) | 0.52073 (19) | 0.0281 (5) | |
C32 | 0.07841 (19) | 0.22905 (19) | 0.43898 (19) | 0.0272 (5) | |
C33 | 0.0260 (2) | 0.1509 (2) | 0.4241 (2) | 0.0318 (5) | |
H33 | −0.0416 | 0.1165 | 0.4670 | 0.038* | |
C34 | 0.0743 (2) | 0.1246 (2) | 0.3458 (2) | 0.0359 (6) | |
H34 | 0.0394 | 0.0721 | 0.3364 | 0.043* | |
C35 | 0.1745 (2) | 0.1759 (2) | 0.2809 (2) | 0.0321 (5) | |
H35 | 0.2053 | 0.1594 | 0.2267 | 0.039* | |
C36 | 0.22907 (19) | 0.25192 (19) | 0.29632 (19) | 0.0274 (5) | |
C37 | 0.18073 (19) | 0.2776 (2) | 0.37604 (19) | 0.0280 (5) | |
H37 | 0.2172 | 0.3278 | 0.3874 | 0.034* | |
C38 | 0.33954 (19) | 0.3072 (2) | 0.2258 (2) | 0.0317 (5) | |
C42 | 0.3999 (2) | 0.5232 (2) | 0.3497 (2) | 0.0362 (6) | |
H42 | 0.3438 | 0.4815 | 0.3468 | 0.043* | |
C44 | 0.6698 (2) | 0.6363 (2) | 0.2983 (2) | 0.0389 (6) | |
H44 | 0.7196 | 0.6177 | 0.2540 | 0.047* | |
C45 | 0.7029 (2) | 0.7002 (3) | 0.3386 (2) | 0.0475 (7) | |
H45 | 0.7771 | 0.7236 | 0.3229 | 0.057* | |
C46 | 0.6278 (3) | 0.7308 (3) | 0.4028 (3) | 0.0512 (8) | |
H46 | 0.6533 | 0.7752 | 0.4278 | 0.061* | |
C47 | 0.5178 (2) | 0.6975 (2) | 0.4302 (2) | 0.0441 (7) | |
H47 | 0.4679 | 0.7190 | 0.4721 | 0.053* | |
C48 | 0.4846 (2) | 0.6298 (2) | 0.3920 (2) | 0.0320 (5) | |
C49 | 0.55859 (19) | 0.6003 (2) | 0.32596 (19) | 0.0294 (5) | |
C52 | 0.7130 (2) | 0.3407 (2) | 0.3692 (2) | 0.0397 (6) | |
H52 | 0.7304 | 0.4105 | 0.3580 | 0.048* | |
C54 | 0.5867 (3) | 0.1422 (3) | 0.3293 (3) | 0.0576 (9) | |
H54 | 0.5409 | 0.1718 | 0.2773 | 0.069* | |
C55 | 0.6014 (3) | 0.0309 (3) | 0.3830 (4) | 0.0742 (12) | |
H55 | 0.5652 | −0.0154 | 0.3665 | 0.089* | |
C56 | 0.6695 (3) | −0.0137 (3) | 0.4615 (3) | 0.0694 (10) | |
H56 | 0.6768 | −0.0893 | 0.4964 | 0.083* | |
C57 | 0.7258 (3) | 0.0496 (3) | 0.4889 (3) | 0.0542 (8) | |
H57 | 0.7713 | 0.0192 | 0.5411 | 0.065* | |
C58 | 0.7116 (2) | 0.1625 (2) | 0.4345 (2) | 0.0392 (6) | |
C59 | 0.6430 (2) | 0.2083 (2) | 0.3562 (2) | 0.0388 (6) | |
C61 | 0.7374 (2) | 0.5185 (2) | 0.0405 (2) | 0.0326 (5) | |
C62 | 0.84094 (19) | 0.5510 (2) | −0.04178 (19) | 0.0287 (5) | |
C63 | 0.85983 (19) | 0.5081 (2) | −0.11240 (19) | 0.0301 (5) | |
H63 | 0.8070 | 0.4594 | −0.1090 | 0.036* | |
C64 | 0.95627 (19) | 0.5369 (2) | −0.18807 (19) | 0.0293 (5) | |
C65 | 1.0354 (2) | 0.6080 (2) | −0.1904 (2) | 0.0360 (6) | |
H65 | 1.1009 | 0.6274 | −0.2403 | 0.043* | |
C66 | 1.0179 (2) | 0.6500 (2) | −0.1197 (2) | 0.0384 (6) | |
H66 | 1.0717 | 0.6970 | −0.1216 | 0.046* | |
C67 | 0.9209 (2) | 0.6227 (2) | −0.0465 (2) | 0.0349 (6) | |
H67 | 0.9088 | 0.6523 | 0.0001 | 0.042* | |
C68 | 0.9774 (2) | 0.4903 (2) | −0.2658 (2) | 0.0352 (6) | |
O1W | 0.6857 (2) | 0.7905 (2) | −0.0032 (2) | 0.0737 (7) | |
H1A | 0.7033 | 0.7153 | 0.0364 | 0.050* | |
H1B | 0.6601 | 0.7889 | −0.0602 | 0.050* | |
H5A | −0.1117 | 0.4654 | 0.4669 | 0.050* | |
H5B | −0.1315 | 0.5257 | 0.5249 | 0.050* | |
H10A | 0.4224 | 0.5905 | 0.0216 | 0.050* | |
H10B | 0.5209 | 0.6373 | −0.0196 | 0.050* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cd1 | 0.03025 (10) | 0.04030 (11) | 0.02969 (10) | −0.00030 (7) | −0.00138 (7) | −0.02227 (9) |
Cd2 | 0.02589 (9) | 0.03907 (11) | 0.02827 (10) | −0.00062 (7) | 0.00033 (7) | −0.01931 (9) |
O1 | 0.0319 (9) | 0.0441 (10) | 0.0383 (10) | −0.0007 (8) | −0.0035 (7) | −0.0267 (9) |
O2 | 0.0267 (9) | 0.0457 (11) | 0.0336 (10) | −0.0022 (7) | 0.0026 (7) | −0.0228 (9) |
O3 | 0.0304 (10) | 0.0629 (13) | 0.0539 (12) | −0.0141 (9) | 0.0067 (8) | −0.0380 (11) |
O4 | 0.0406 (10) | 0.0516 (12) | 0.0381 (11) | −0.0027 (9) | 0.0077 (8) | −0.0269 (10) |
O5 | 0.0329 (9) | 0.0397 (10) | 0.0308 (9) | −0.0009 (7) | 0.0029 (7) | −0.0191 (8) |
O6 | 0.0417 (10) | 0.0524 (12) | 0.0363 (10) | 0.0016 (9) | 0.0030 (8) | −0.0299 (10) |
O7 | 0.0314 (9) | 0.0527 (12) | 0.0344 (10) | −0.0047 (8) | 0.0028 (7) | −0.0239 (9) |
O8 | 0.0448 (12) | 0.0897 (17) | 0.0446 (12) | 0.0008 (11) | 0.0057 (9) | −0.0469 (12) |
O9 | 0.0587 (13) | 0.0615 (14) | 0.0544 (13) | −0.0111 (11) | 0.0073 (10) | −0.0443 (12) |
O10 | 0.0336 (9) | 0.0564 (12) | 0.0328 (10) | 0.0019 (8) | −0.0044 (7) | −0.0254 (9) |
N11 | 0.0439 (13) | 0.0492 (14) | 0.0377 (13) | 0.0072 (11) | 0.0048 (10) | −0.0225 (12) |
N13 | 0.0357 (11) | 0.0367 (12) | 0.0307 (11) | 0.0000 (9) | −0.0013 (9) | −0.0152 (10) |
N21 | 0.0739 (19) | 0.076 (2) | 0.0512 (17) | 0.0170 (15) | −0.0335 (14) | −0.0374 (16) |
N23 | 0.0399 (13) | 0.0604 (16) | 0.0383 (13) | 0.0057 (11) | −0.0089 (10) | −0.0262 (12) |
N41 | 0.0280 (11) | 0.0482 (13) | 0.0370 (12) | 0.0037 (9) | 0.0012 (9) | −0.0251 (11) |
N43 | 0.0298 (11) | 0.0407 (12) | 0.0336 (12) | −0.0013 (9) | −0.0013 (9) | −0.0217 (10) |
N51 | 0.0310 (11) | 0.0512 (14) | 0.0408 (13) | 0.0001 (10) | −0.0112 (9) | −0.0232 (12) |
N53 | 0.0309 (11) | 0.0425 (13) | 0.0337 (12) | 0.0045 (9) | −0.0044 (9) | −0.0176 (10) |
C12 | 0.0486 (16) | 0.0392 (15) | 0.0349 (15) | 0.0006 (12) | −0.0027 (12) | −0.0197 (13) |
C14 | 0.0384 (15) | 0.0457 (16) | 0.0416 (16) | 0.0018 (12) | −0.0028 (12) | −0.0229 (14) |
C15 | 0.0543 (19) | 0.0550 (19) | 0.056 (2) | −0.0026 (15) | −0.0096 (15) | −0.0314 (17) |
C16 | 0.0466 (18) | 0.063 (2) | 0.056 (2) | −0.0179 (15) | −0.0061 (15) | −0.0210 (18) |
C17 | 0.0343 (15) | 0.063 (2) | 0.0452 (18) | −0.0055 (14) | 0.0026 (12) | −0.0183 (16) |
C18 | 0.0351 (14) | 0.0442 (16) | 0.0270 (13) | 0.0054 (11) | −0.0043 (10) | −0.0117 (12) |
C19 | 0.0303 (13) | 0.0340 (14) | 0.0296 (13) | 0.0020 (10) | −0.0044 (10) | −0.0110 (11) |
C22 | 0.077 (2) | 0.078 (2) | 0.055 (2) | 0.0258 (19) | −0.0292 (18) | −0.046 (2) |
C24 | 0.114 (3) | 0.047 (2) | 0.076 (3) | 0.006 (2) | −0.057 (2) | −0.0250 (19) |
C25 | 0.181 (5) | 0.048 (2) | 0.119 (4) | 0.023 (3) | −0.093 (4) | −0.039 (3) |
C26 | 0.130 (4) | 0.046 (2) | 0.103 (4) | 0.019 (2) | −0.066 (3) | −0.025 (2) |
C27 | 0.068 (2) | 0.050 (2) | 0.054 (2) | −0.0036 (16) | −0.0275 (17) | −0.0060 (17) |
C28 | 0.0435 (16) | 0.0514 (18) | 0.0369 (16) | −0.0069 (13) | −0.0089 (12) | −0.0132 (14) |
C29 | 0.0414 (15) | 0.0437 (16) | 0.0374 (16) | −0.0094 (12) | −0.0079 (12) | −0.0106 (13) |
C31 | 0.0285 (12) | 0.0298 (12) | 0.0261 (12) | 0.0036 (10) | −0.0049 (9) | −0.0137 (11) |
C32 | 0.0263 (12) | 0.0288 (12) | 0.0237 (12) | 0.0036 (9) | −0.0038 (9) | −0.0107 (10) |
C33 | 0.0277 (12) | 0.0314 (13) | 0.0359 (14) | −0.0031 (10) | −0.0021 (10) | −0.0168 (11) |
C34 | 0.0387 (14) | 0.0337 (14) | 0.0414 (15) | −0.0022 (11) | −0.0067 (11) | −0.0229 (12) |
C35 | 0.0353 (13) | 0.0351 (14) | 0.0298 (13) | 0.0058 (10) | −0.0047 (10) | −0.0192 (11) |
C36 | 0.0267 (12) | 0.0293 (12) | 0.0259 (12) | 0.0025 (9) | −0.0048 (9) | −0.0130 (10) |
C37 | 0.0257 (12) | 0.0299 (13) | 0.0291 (13) | 0.0005 (9) | −0.0047 (9) | −0.0148 (11) |
C38 | 0.0278 (12) | 0.0339 (14) | 0.0303 (13) | 0.0043 (10) | −0.0032 (10) | −0.0138 (11) |
C42 | 0.0302 (13) | 0.0443 (15) | 0.0365 (15) | 0.0002 (11) | −0.0040 (11) | −0.0219 (13) |
C44 | 0.0328 (13) | 0.0459 (16) | 0.0381 (15) | −0.0015 (11) | 0.0013 (11) | −0.0224 (13) |
C45 | 0.0384 (15) | 0.0539 (18) | 0.0497 (18) | −0.0115 (13) | −0.0031 (13) | −0.0254 (15) |
C46 | 0.0578 (19) | 0.0544 (19) | 0.0539 (19) | −0.0088 (15) | −0.0080 (15) | −0.0360 (16) |
C47 | 0.0527 (17) | 0.0468 (17) | 0.0430 (16) | 0.0035 (13) | −0.0028 (13) | −0.0315 (14) |
C48 | 0.0312 (13) | 0.0364 (14) | 0.0273 (13) | 0.0051 (10) | −0.0044 (10) | −0.0149 (11) |
C49 | 0.0311 (12) | 0.0303 (13) | 0.0253 (12) | 0.0021 (10) | −0.0036 (10) | −0.0128 (11) |
C52 | 0.0284 (13) | 0.0473 (16) | 0.0415 (16) | −0.0011 (11) | −0.0023 (11) | −0.0210 (14) |
C54 | 0.066 (2) | 0.056 (2) | 0.065 (2) | 0.0171 (16) | −0.0385 (17) | −0.0326 (18) |
C55 | 0.094 (3) | 0.055 (2) | 0.099 (3) | 0.017 (2) | −0.056 (2) | −0.046 (2) |
C56 | 0.090 (3) | 0.0417 (19) | 0.084 (3) | 0.0165 (18) | −0.044 (2) | −0.0279 (19) |
C57 | 0.0568 (19) | 0.0510 (19) | 0.0522 (19) | 0.0139 (15) | −0.0266 (15) | −0.0184 (16) |
C58 | 0.0316 (13) | 0.0488 (16) | 0.0363 (15) | 0.0052 (11) | −0.0082 (11) | −0.0194 (13) |
C59 | 0.0353 (14) | 0.0458 (16) | 0.0381 (15) | 0.0074 (11) | −0.0096 (11) | −0.0218 (13) |
C61 | 0.0312 (13) | 0.0409 (15) | 0.0248 (13) | 0.0066 (11) | −0.0039 (10) | −0.0157 (11) |
C62 | 0.0302 (12) | 0.0320 (13) | 0.0253 (12) | 0.0035 (10) | −0.0045 (9) | −0.0152 (11) |
C63 | 0.0299 (12) | 0.0324 (13) | 0.0285 (13) | 0.0000 (10) | −0.0048 (10) | −0.0151 (11) |
C64 | 0.0295 (12) | 0.0338 (13) | 0.0238 (12) | 0.0037 (10) | −0.0031 (9) | −0.0140 (11) |
C65 | 0.0314 (13) | 0.0410 (15) | 0.0308 (14) | −0.0020 (11) | 0.0015 (10) | −0.0156 (12) |
C66 | 0.0378 (14) | 0.0367 (15) | 0.0416 (15) | −0.0067 (11) | −0.0050 (11) | −0.0197 (13) |
C67 | 0.0407 (14) | 0.0378 (14) | 0.0335 (14) | 0.0031 (11) | −0.0062 (11) | −0.0231 (12) |
C68 | 0.0360 (14) | 0.0414 (15) | 0.0271 (13) | 0.0051 (11) | −0.0058 (11) | −0.0158 (12) |
O1W | 0.115 (2) | 0.0642 (16) | 0.0637 (16) | 0.0202 (15) | −0.0428 (15) | −0.0403 (14) |
Geometric parameters (Å, º) top
Cd1—O1 | 2.4083 (17) | C24—C29 | 1.392 (5) |
Cd1—O2 | 2.3774 (17) | C24—H24 | 0.9300 |
Cd1—O5 | 2.4255 (18) | C25—C26 | 1.404 (6) |
Cd1—O9i | 2.2203 (19) | C25—H25 | 0.9300 |
Cd1—N13 | 2.292 (2) | C26—C27 | 1.358 (6) |
Cd1—N23 | 2.306 (2) | C26—H26 | 0.9300 |
Cd2—O3 | 2.2028 (17) | C27—C28 | 1.394 (5) |
Cd2—O6 | 2.3950 (19) | C27—H27 | 0.9300 |
Cd2—O7 | 2.3511 (17) | C28—C29 | 1.395 (4) |
Cd2—O10 | 2.4471 (19) | C31—C32 | 1.495 (3) |
Cd2—N43 | 2.273 (2) | C32—C37 | 1.390 (3) |
Cd2—N53 | 2.311 (2) | C32—C33 | 1.395 (3) |
O1—C31 | 1.256 (3) | C33—C34 | 1.378 (3) |
O2—C31 | 1.271 (3) | C33—H33 | 0.9300 |
O3—C38 | 1.254 (3) | C34—C35 | 1.384 (4) |
O4—C38 | 1.241 (3) | C34—H34 | 0.9300 |
O5—H5A | 0.837 | C35—C36 | 1.387 (3) |
O5—H5B | 0.9717 | C35—H35 | 0.9300 |
O6—C61 | 1.261 (3) | C36—C37 | 1.390 (3) |
O7—C61 | 1.257 (3) | C36—C38 | 1.519 (3) |
O8—C68 | 1.232 (3) | C37—H37 | 0.9300 |
O9—C68 | 1.254 (3) | C42—H42 | 0.9300 |
O10—H10A | 0.872 | C44—C45 | 1.369 (4) |
O10—H10B | 0.863 | C44—C49 | 1.393 (3) |
N11—C12 | 1.333 (4) | C44—H44 | 0.9300 |
N11—C18 | 1.372 (4) | C45—C46 | 1.396 (4) |
N11—H11 | 0.8600 | C45—H45 | 0.9300 |
N13—C12 | 1.316 (3) | C46—C47 | 1.372 (4) |
N13—C19 | 1.394 (3) | C46—H46 | 0.9300 |
N21—C22 | 1.338 (4) | C47—C48 | 1.390 (4) |
N21—C28 | 1.368 (4) | C47—H47 | 0.9300 |
N21—H21 | 0.8600 | C48—C49 | 1.399 (3) |
N23—C22 | 1.302 (4) | C52—H52 | 0.9300 |
N23—C29 | 1.390 (4) | C54—C55 | 1.378 (5) |
N41—C42 | 1.333 (3) | C54—C59 | 1.390 (4) |
N41—C48 | 1.378 (3) | C54—H54 | 0.9300 |
N41—H41 | 0.8600 | C55—C56 | 1.394 (5) |
N43—C42 | 1.310 (3) | C55—H55 | 0.9300 |
N43—C49 | 1.396 (3) | C56—C57 | 1.363 (5) |
N51—C52 | 1.340 (4) | C56—H56 | 0.9300 |
N51—C58 | 1.370 (4) | C57—C58 | 1.396 (4) |
N51—H51 | 0.8600 | C57—H57 | 0.9300 |
N53—C52 | 1.317 (3) | C58—C59 | 1.398 (4) |
N53—C59 | 1.392 (4) | C61—C62 | 1.493 (3) |
C12—H12 | 0.9300 | C62—C63 | 1.385 (3) |
C14—C15 | 1.378 (4) | C62—C67 | 1.389 (3) |
C14—C19 | 1.387 (4) | C63—C64 | 1.385 (3) |
C14—H14 | 0.9300 | C63—H63 | 0.9300 |
C15—C16 | 1.401 (5) | C64—C65 | 1.390 (3) |
C15—H15 | 0.9300 | C64—C68 | 1.520 (3) |
C16—C17 | 1.364 (5) | C65—C66 | 1.376 (4) |
C16—H16 | 0.9300 | C65—H65 | 0.9300 |
C17—C18 | 1.392 (4) | C66—C67 | 1.374 (4) |
C17—H17 | 0.9300 | C66—H66 | 0.9300 |
C18—C19 | 1.396 (3) | C67—H67 | 0.9300 |
C22—H22 | 0.9300 | O1W—H1A | 0.958 |
C24—C25 | 1.369 (6) | O1W—H1B | 0.928 |
| | | |
O1—Cd1—O2 | 54.72 (6) | C26—C27—H27 | 121.2 |
O1—Cd1—O5 | 82.97 (6) | C28—C27—H27 | 121.2 |
O1—Cd1—O9i | 122.66 (7) | N21—C28—C27 | 132.9 (3) |
O1—Cd1—N13 | 150.05 (7) | N21—C28—C29 | 105.2 (3) |
O1—Cd1—N23 | 88.60 (7) | C27—C28—C29 | 121.8 (3) |
O2—Cd1—O5 | 81.87 (6) | N23—C29—C24 | 130.6 (3) |
O2—Cd1—O9i | 164.37 (8) | N23—C29—C28 | 109.4 (3) |
O2—Cd1—N13 | 95.42 (7) | C24—C29—C28 | 120.0 (3) |
O2—Cd1—N23 | 102.75 (8) | O1—C31—O2 | 121.0 (2) |
O5—Cd1—O9i | 82.50 (7) | O1—C31—C32 | 120.2 (2) |
O5—Cd1—N13 | 96.00 (7) | O2—C31—C32 | 118.7 (2) |
O5—Cd1—N23 | 165.58 (7) | C37—C32—C33 | 119.3 (2) |
O9i—Cd1—N13 | 86.59 (8) | C37—C32—C31 | 120.9 (2) |
O9i—Cd1—N23 | 92.34 (9) | C33—C32—C31 | 119.8 (2) |
N13—Cd1—N23 | 97.13 (8) | C34—C33—C32 | 120.0 (2) |
O3—Cd2—O6 | 168.42 (7) | C34—C33—H33 | 120.0 |
O3—Cd2—O7 | 119.72 (7) | C32—C33—H33 | 120.0 |
O3—Cd2—O10 | 87.49 (7) | C33—C34—C35 | 120.4 (2) |
O3—Cd2—N43 | 88.68 (7) | C33—C34—H34 | 119.8 |
O3—Cd2—N53 | 100.62 (8) | C35—C34—H34 | 119.8 |
O6—Cd2—O7 | 55.21 (6) | C34—C35—C36 | 120.4 (2) |
O6—Cd2—O10 | 81.70 (6) | C34—C35—H35 | 119.8 |
O6—Cd2—N43 | 95.52 (7) | C36—C35—H35 | 119.8 |
O6—Cd2—N53 | 89.99 (7) | C35—C36—C37 | 119.1 (2) |
O7—Cd2—O10 | 84.10 (6) | C35—C36—C38 | 120.2 (2) |
O7—Cd2—N43 | 150.69 (7) | C37—C36—C38 | 120.7 (2) |
O7—Cd2—N53 | 89.20 (7) | C36—C37—C32 | 120.8 (2) |
O10—Cd2—N43 | 90.56 (7) | C36—C37—H37 | 119.6 |
O10—Cd2—N53 | 171.35 (7) | C32—C37—H37 | 119.6 |
N43—Cd2—N53 | 92.62 (8) | O4—C38—O3 | 125.7 (2) |
C31—O1—Cd1 | 91.57 (14) | O4—C38—C36 | 118.6 (2) |
C31—O2—Cd1 | 92.62 (14) | O3—C38—C36 | 115.7 (2) |
C38—O3—Cd2 | 131.75 (16) | N43—C42—N41 | 113.3 (2) |
Cd1—O5—H5A | 112.08 | N43—C42—H42 | 123.4 |
Cd1—O5—H5B | 109.64 | N41—C42—H42 | 123.4 |
H5A—O5—H5B | 104.10 | C45—C44—C49 | 117.6 (2) |
C61—O6—Cd2 | 90.45 (15) | C45—C44—H44 | 121.2 |
C61—O7—Cd2 | 92.60 (14) | C49—C44—H44 | 121.2 |
C68—O9—Cd1ii | 125.43 (18) | C44—C45—C46 | 121.5 (3) |
Cd2—O10—H10A | 115.50 | C44—C45—H45 | 119.3 |
Cd2—O10—H10B | 115.91 | C46—C45—H45 | 119.3 |
H10A—O10—H10B | 96.45 | C47—C46—C45 | 122.0 (3) |
C12—N11—C18 | 107.6 (2) | C47—C46—H46 | 119.0 |
C12—N11—H11 | 126.2 | C45—C46—H46 | 119.0 |
C18—N11—H11 | 126.2 | C46—C47—C48 | 116.6 (3) |
C12—N13—C19 | 104.8 (2) | C46—C47—H47 | 121.7 |
C12—N13—Cd1 | 120.80 (18) | C48—C47—H47 | 121.7 |
C19—N13—Cd1 | 133.71 (17) | N41—C48—C47 | 133.2 (2) |
C22—N21—C28 | 107.0 (3) | N41—C48—C49 | 104.9 (2) |
C22—N21—H21 | 126.5 | C47—C48—C49 | 121.9 (2) |
C28—N21—H21 | 126.5 | C44—C49—N43 | 130.6 (2) |
C22—N23—C29 | 104.3 (3) | C44—C49—C48 | 120.4 (2) |
C22—N23—Cd1 | 125.3 (2) | N43—C49—C48 | 109.0 (2) |
C29—N23—Cd1 | 130.03 (19) | N53—C52—N51 | 112.9 (3) |
C42—N41—C48 | 107.8 (2) | N53—C52—H52 | 123.6 |
C42—N41—H41 | 126.1 | N51—C52—H52 | 123.6 |
C48—N41—H41 | 126.1 | C55—C54—C59 | 117.3 (3) |
C42—N43—C49 | 105.0 (2) | C55—C54—H54 | 121.4 |
C42—N43—Cd2 | 121.07 (17) | C59—C54—H54 | 121.4 |
C49—N43—Cd2 | 133.85 (16) | C54—C55—C56 | 121.5 (3) |
C52—N51—C58 | 107.6 (2) | C54—C55—H55 | 119.3 |
C52—N51—H51 | 126.2 | C56—C55—H55 | 119.3 |
C58—N51—H51 | 126.2 | C57—C56—C55 | 122.2 (3) |
C52—N53—C59 | 105.2 (2) | C57—C56—H56 | 118.9 |
C52—N53—Cd2 | 124.11 (19) | C55—C56—H56 | 118.9 |
C59—N53—Cd2 | 130.68 (17) | C56—C57—C58 | 116.6 (3) |
N13—C12—N11 | 113.2 (2) | C56—C57—H57 | 121.7 |
N13—C12—H12 | 123.4 | C58—C57—H57 | 121.7 |
N11—C12—H12 | 123.4 | N51—C58—C57 | 132.6 (3) |
C15—C14—C19 | 117.8 (3) | N51—C58—C59 | 105.6 (2) |
C15—C14—H14 | 121.1 | C57—C58—C59 | 121.8 (3) |
C19—C14—H14 | 121.1 | C54—C59—N53 | 130.6 (3) |
C14—C15—C16 | 120.9 (3) | C54—C59—C58 | 120.6 (3) |
C14—C15—H15 | 119.5 | N53—C59—C58 | 108.8 (2) |
C16—C15—H15 | 119.5 | O7—C61—O6 | 121.7 (2) |
C17—C16—C15 | 122.1 (3) | O7—C61—C62 | 119.5 (2) |
C17—C16—H16 | 119.0 | O6—C61—C62 | 118.7 (2) |
C15—C16—H16 | 119.0 | C63—C62—C67 | 119.1 (2) |
C16—C17—C18 | 117.0 (3) | C63—C62—C61 | 120.6 (2) |
C16—C17—H17 | 121.5 | C67—C62—C61 | 120.2 (2) |
C18—C17—H17 | 121.5 | C62—C63—C64 | 120.9 (2) |
N11—C18—C17 | 132.9 (3) | C62—C63—H63 | 119.5 |
N11—C18—C19 | 105.4 (2) | C64—C63—H63 | 119.5 |
C17—C18—C19 | 121.7 (3) | C63—C64—C65 | 118.7 (2) |
C14—C19—N13 | 130.5 (2) | C63—C64—C68 | 121.2 (2) |
C14—C19—C18 | 120.5 (2) | C65—C64—C68 | 120.1 (2) |
N13—C19—C18 | 109.0 (2) | C66—C65—C64 | 120.7 (2) |
N23—C22—N21 | 114.1 (3) | C66—C65—H65 | 119.6 |
N23—C22—H22 | 123.0 | C64—C65—H65 | 119.6 |
N21—C22—H22 | 123.0 | C67—C66—C65 | 120.0 (2) |
C25—C24—C29 | 117.8 (3) | C67—C66—H66 | 120.0 |
C25—C24—H24 | 121.1 | C65—C66—H66 | 120.0 |
C29—C24—H24 | 121.1 | C66—C67—C62 | 120.4 (2) |
C24—C25—C26 | 121.8 (4) | C66—C67—H67 | 119.8 |
C24—C25—H25 | 119.1 | C62—C67—H67 | 119.8 |
C26—C25—H25 | 119.1 | O8—C68—O9 | 126.2 (3) |
C27—C26—C25 | 121.0 (4) | O8—C68—C64 | 118.1 (2) |
C27—C26—H26 | 119.5 | O9—C68—C64 | 115.7 (2) |
C25—C26—H26 | 119.5 | H1A—O1W—H1B | 99.6 |
C26—C27—C28 | 117.6 (3) | | |
Symmetry codes: (i) x−1, y, z+1; (ii) x+1, y, z−1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1A···O6 | 0.96 | 1.86 | 2.804 (4) | 169 |
O1W—H1B···O4iii | 0.93 | 2.14 | 3.010 (4) | 156 |
O5—H5A···O8iii | 0.84 | 1.84 | 2.660 (3) | 168 |
O5—H5B···O1iv | 0.97 | 1.93 | 2.836 (3) | 155 |
O10—H10A···O7iii | 0.87 | 1.89 | 2.745 (3) | 166 |
O10—H10B···O4iii | 0.86 | 1.92 | 2.776 (3) | 173 |
N11—H11···O10iv | 0.86 | 2.34 | 3.020 (4) | 136 |
N21—H21···O1Wv | 0.86 | 2.15 | 2.899 (4) | 145 |
N41—H41···O5iv | 0.86 | 2.17 | 2.907 (3) | 143 |
N51—H51···O2vi | 0.86 | 2.07 | 2.915 (3) | 170 |
Symmetry codes: (iii) −x+1, −y+1, −z; (iv) −x, −y+1, −z+1; (v) −x+1, −y+1, −z+1; (vi) x+1, y, z. |
Experimental details
Crystal data |
Chemical formula | [Cd(C8H4O4)(C7H6N2)2(H2O)]·0.5H2O |
Mr | 1079.62 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 12.2779 (12), 13.9092 (12), 14.2565 (13) |
α, β, γ (°) | 61.140 (1), 80.629 (2), 88.464 (1) |
V (Å3) | 2100.1 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.09 |
Crystal size (mm) | 0.32 × 0.21 × 0.11 |
|
Data collection |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.702, 0.895 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16098, 7404, 6572 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.598 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.024, 0.060, 1.07 |
No. of reflections | 7404 |
No. of parameters | 586 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.41 |
Selected geometric parameters (Å, º) topCd1—O1 | 2.4083 (17) | Cd2—O3 | 2.2028 (17) |
Cd1—O2 | 2.3774 (17) | Cd2—O6 | 2.3950 (19) |
Cd1—O5 | 2.4255 (18) | Cd2—O7 | 2.3511 (17) |
Cd1—O9i | 2.2203 (19) | Cd2—O10 | 2.4471 (19) |
Cd1—N13 | 2.292 (2) | Cd2—N43 | 2.273 (2) |
Cd1—N23 | 2.306 (2) | Cd2—N53 | 2.311 (2) |
| | | |
O1—Cd1—O2 | 54.72 (6) | O3—Cd2—O6 | 168.42 (7) |
O1—Cd1—O9i | 122.66 (7) | O3—Cd2—O7 | 119.72 (7) |
O1—Cd1—N13 | 150.05 (7) | O3—Cd2—N43 | 88.68 (7) |
O2—Cd1—O9i | 164.37 (8) | O6—Cd2—O7 | 55.21 (6) |
O2—Cd1—N13 | 95.42 (7) | O6—Cd2—N43 | 95.52 (7) |
O9i—Cd1—N13 | 86.59 (8) | O7—Cd2—N43 | 150.69 (7) |
Symmetry code: (i) x−1, y, z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1A···O6 | 0.96 | 1.86 | 2.804 (4) | 169 |
O1W—H1B···O4ii | 0.93 | 2.14 | 3.010 (4) | 156 |
O5—H5A···O8ii | 0.84 | 1.84 | 2.660 (3) | 168 |
O5—H5B···O1iii | 0.97 | 1.93 | 2.836 (3) | 155 |
O10—H10A···O7ii | 0.87 | 1.89 | 2.745 (3) | 166 |
O10—H10B···O4ii | 0.86 | 1.92 | 2.776 (3) | 173 |
N11—H11···O10iii | 0.86 | 2.34 | 3.020 (4) | 136 |
N21—H21···O1Wiv | 0.86 | 2.15 | 2.899 (4) | 145 |
N41—H41···O5iii | 0.86 | 2.17 | 2.907 (3) | 143 |
N51—H51···O2v | 0.86 | 2.07 | 2.915 (3) | 170 |
Symmetry codes: (ii) −x+1, −y+1, −z; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z+1; (v) x+1, y, z. |
The consequences of non-covalent interaction in chemistry and structural biology have stimulated interest in exploring a variety of intermolecular forces. The aromatic π–π stacking interaction is correlated with electron transfer in some biological systems (Deisenhofer & Michel, 1989), and several structure determinations have revealed that the π–π stacking interaction commonly occurs in metal complexes with aromatic heteropolycyclic ligands (Nie et al., 2001). We present here the structure of the polymeric CdII complex, (I), of benzimidazole, in which π–π stacking occurs between adjacent polymeric chains.
The asymmetric unit of (I) contains two complex CdII units and one lattice water molecule, as shown in Fig. 1. The two independent Cd atoms have the same distorted octahedral coordination geometry, formed by two benzimidazole groups (BZIM) in a cis configuration, a coordinated water molecule and two phthalate dianions. Each phthalate dianion coordinates to two independent Cd atoms with both terminal carboxy groups, one in a monodentate fashion and the other in a chelating mode.
In the Cd1 complex unit, the O2—Cd1—N13 and O2—Cd1—O9i [symmetry code: (i) −1 + x,y,1 + z] angles (Table 1) are close to expected values, implying significant overlap of the Cd1 and O2 atomic orbitals, whereas the O1—Cd1—O9i angle [122.66 (7)°] suggests poor overlap of the Cd1 and O1 atomic orbitals. However, the Cd1—O1 bond distance is essentially the same as the Cd1—O2 bond distance. Likewise, in the Cd2 complex unit, the O6—Cd2—N43 and O6—Cd2—O3 angles imply significant overlap of the Cd2 and O6 atomic orbitals, whereas the O7—Cd2—O3 angle [119.72 (7)°] suggests poor overlap of the Cd2 and O7 atomic orbitals. However, the Cd2—O7 bond is shorter than the Cd2—O6 bond. These facts imply the existence of electrostatic interaction between the Cd atom and the coordinated carboxy group.
The Cd1—O9i and Cd2—O3 bonds for monodentate carboxy groups are significantly shorter than the chelating Cd—O bonds. The uncoordinated carboxy atoms O4 and O8 are hydrogen bonded to the neighboring coordinated water molecules O10 and O5. In addition, lattice water molecules O1W and O1Wii interact with carboxy groups bonded to the Cd2 complex unit via hydrogen bonding (Fig. 1), but there are no lattice water interactions with carboxy groups bonded to the Cd1 complex unit. Thus the Cd1 and Cd2 complex units are distinctly different.
Carboxy atoms O1, O2 and O9i, and BZIM atom N13, form an equatorial coordination plane around atom Cd1, with a maximum atomic deviation of 0.0339 (10) Å (for O2), while atoms O6, O7, O3 and N43 form another equatorial coordination plane around atom Cd2, with a maximum atomic deviation of 0.0759 (12) Å (for O6). The C31 phthalate dianion bridging the two Cd complex units is nearly parallel to both equatorial planes, the dihedral angles being 4.71 (11) and 2.71 (11)°, respectively. Thus the two equatorial coordinate planes are also nearly parallel, the dihedral angle being 3.80 (14)°.
Phthalate dianions bridge the adjacent Cd atoms to form zigzag polymeric chains, as shown in Fig. 2, along the [10–1] direction. π–π stacking interactions occur between neighboring polymeric chains related by an inversion center. The parallel N43–BZIM and N43iv–BZIM rings [symmetry code (iv): 1 − x,1 − y,1 − z] overlap one another, as do the parallel C62–phthalate and C62vi–phthalate rings [symmetry code (vi): 2 − x,1 − y,-z], as shown in Fig. 2. The separations between the neighboring parallel aromatic rings are 3.427 (14) (BZIM rings) and 3.298 (19) Å (phthalate rings).
Besides the hydrogen bonding between the carboxy and water O atoms mentioned above, hydrogen bonding is also observed between the BZIM and water molecules and between the BZIM and carboxyl groups (Table 2).