Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807045679/gk2098sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807045679/gk2098Isup2.hkl |
CCDC reference: 663792
To a solution of N,N-dimethyl phosphoramidochloridic acid 4-methyl phenyl ester (0.82 g, 3.51 mmol) in 30 ml dry chloroform, isoprophylamine (0.41 g, 7.02 mmol) was added slowly and solution stirred at 273 K for 5 h. The solvent was evaporated in vacuum. Then the product was washed with water to remove [(CH3)2CHNH3]Cl. After drying, the product was crystallized from chloroform at room temperature.
The H atom of the NH group was found in a difference Fourier map and the remaining H atoms were placed in calculated positions. They were refined in riding model approximation with Uiso(H) = 1.2Ueq(N,C) or 1.5Ueq(C) for methyl groups.
Acetylcholinesterase (AChE) enzyme inhibition by organophosphorus (OPs) compounds is well known (Ekstrom et al., 2006). It is generally governed by intramolecular properties (lipophilicity, electronic, steric) and three-dimensional structure of OPs (Singh, 1999). The range of herbicides which can be derived from OPs is very large indeed. For example, Amiprofos-methyl [O-methyl O-(4-methyl-2-nitrophenyl) N-isopropyl phosphoramidothioate] is a herbicidal organophosphate (Fest & Schmidt, 1982). In our previous work, we reported on the structure of N,N-dimethyl O-p-tolyl phosphoramidocyanidate (Ghadimi et al., 2007). Here, we report the synthesis and crystal structure of the title compound. The four different groups linked to P atom give rise to a distorted tetrahedral configuration (Figure 1). The bond angles around P atom are in the range of 102.76 (14)° [for O2—P1—N2 amgle] to 114.77 (14)° [for the O1—P1—N2 angle]. The P1—O2 bond length [1.607 (2) Å] is shorter than the P—O single bond length (1.64 Å; Corbridge, 1995). Also, the P—N bond lengths [P1—N1 = 1.645 (3) Å and P1—N2 = 1.617 (2) Å] are shorter than the P—N single bond length (1.77 Å; Corbridge, 1995). The sum of the surrounding angles around N1 nad N2 (about 353°) points to sp2 hybridization for the nitrogen atoms. Molecules are linked via N—H···O=P hydrogen bonds (Table 1, Fig. 2|) into one-dimensional chains parallel to the c axis.
For related literature, see: Corbridge (1995); Ekstrom et al. (2006); Fest & Schmidt (1982); Ghadimi et al. (2007); Singh (1999).
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 (Bruker, 2005; data reduction: APEX2 (Bruker, 2005; program(s) used to solve structure: SHELXTL (Bruker, 1998); program(s) used to refine structure: SHELXTL (Bruker, 1998); molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL (Bruker, 1998).
C12H21N2O2P | F(000) = 552 |
Mr = 256.28 | Dx = 1.203 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 16.711 (5) Å | Cell parameters from 498 reflections |
b = 8.306 (2) Å | θ = 3–20° |
c = 10.425 (3) Å | µ = 0.19 mm−1 |
β = 101.963 (9)° | T = 100 K |
V = 1415.6 (7) Å3 | Needle, colorless |
Z = 4 | 0.21 × 0.09 × 0.08 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2779 independent reflections |
Radiation source: fine-focus sealed tube | 1418 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.107 |
Detector resolution: 0 pixels mm-1 | θmax = 26.0°, θmin = 1.3° |
π and ω scans | h = −20→19 |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | k = −10→8 |
Tmin = 0.963, Tmax = 0.987 | l = −12→12 |
6264 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: mixed |
wR(F2) = 0.093 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.01P)2 + 0.01P] where P = (Fo2 + 2Fc2)/3 |
2779 reflections | (Δ/σ)max < 0.001 |
154 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C12H21N2O2P | V = 1415.6 (7) Å3 |
Mr = 256.28 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 16.711 (5) Å | µ = 0.19 mm−1 |
b = 8.306 (2) Å | T = 100 K |
c = 10.425 (3) Å | 0.21 × 0.09 × 0.08 mm |
β = 101.963 (9)° |
Bruker SMART APEXII CCD area-detector diffractometer | 2779 independent reflections |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | 1418 reflections with I > 2σ(I) |
Tmin = 0.963, Tmax = 0.987 | Rint = 0.107 |
6264 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 0 restraints |
wR(F2) = 0.093 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.27 e Å−3 |
2779 reflections | Δρmin = −0.28 e Å−3 |
154 parameters |
Experimental. 1H NMR (CDCl3, p.p.m.): 1.12 (d, 3H, 3JH—H = 6.5 Hz, isopropylamine-CH3), 1.15 (d, 3H, 3JH—H = 6.4 Hz, isopropylamine-CH3), 2.25 (s, 3 H, p-CH3), 2.33 (b, 1H, NH), 2.68 (d, 3JPNCH = 10.1 Hz, 6H, N(CH3)2), 3.38–3.39 (m, 1H, isopropylamine-CH), 7.03 (m, 4 H, Ar—H); 13C NMR (CDCl3, p.p.m.): 20.64 (s, 1 C, p-CH3), 25.27 (d, 3JP—C = 5.9 Hz, 1 C, isopropylamine-CH3), 25.52 (d, 3JP—C = 5.3 Hz, 1 C, isopropylamine-CH3), 36.96 (d, 2JP—C = 3.8 Hz, 2 C, N(CH3)2), 43.38 (s, 1 C, isopropylamine-CH), 119.92 (d, 3JP—C = 4.8 Hz, 2 C, Cortho), 129.96 (s, 2 C, Cmeta), 133.50 (s, 1 C, Cpara), 149.12 (d, 2JP—C = 6.1 Hz, 1 C, Cipso); 31P{1H} NMR (CDCl3, p.p.m.): 13.70 (s); 31P NMR (CDCl3, p.p.m.): 13.70 (m). IR (KBr, cm-1): 3210, 2949, 2940, 1599, 1499, 1455, 1297, 1227 (P=O), 1198, 1162, 1040, 985, 906, 816, 794, 705. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.21748 (6) | 0.33403 (11) | 0.82100 (9) | 0.0181 (2) | |
O1 | 0.20364 (14) | 0.3011 (2) | 0.6793 (2) | 0.0226 (6) | |
O2 | 0.30994 (14) | 0.3037 (2) | 0.8981 (2) | 0.0179 (6) | |
N1 | 0.20238 (18) | 0.5259 (3) | 0.8471 (3) | 0.0209 (7) | |
N2 | 0.16505 (16) | 0.2225 (3) | 0.9006 (3) | 0.0178 (7) | |
H2 | 0.1838 | 0.2190 | 0.9885 | 0.021* | |
C1 | 0.2200 (2) | 0.6460 (4) | 0.7554 (4) | 0.0310 (10) | |
H1A | 0.1838 | 0.7389 | 0.7552 | 0.047* | |
H1B | 0.2109 | 0.5995 | 0.6671 | 0.047* | |
H1C | 0.2771 | 0.6807 | 0.7819 | 0.047* | |
C2 | 0.2109 (2) | 0.5839 (4) | 0.9817 (4) | 0.0295 (10) | |
H2A | 0.1754 | 0.6776 | 0.9827 | 0.044* | |
H2B | 0.2679 | 0.6147 | 1.0163 | 0.044* | |
H2C | 0.1951 | 0.4983 | 1.0362 | 0.044* | |
C3 | 0.0771 (2) | 0.1973 (4) | 0.8552 (3) | 0.0226 (9) | |
H3A | 0.0621 | 0.2266 | 0.7602 | 0.027* | |
C4 | 0.0277 (2) | 0.3017 (4) | 0.9294 (3) | 0.0318 (10) | |
H4A | −0.0307 | 0.2786 | 0.8989 | 0.048* | |
H4B | 0.0380 | 0.4155 | 0.9139 | 0.048* | |
H4C | 0.0437 | 0.2786 | 1.0235 | 0.048* | |
C5 | 0.0583 (2) | 0.0194 (4) | 0.8689 (4) | 0.0374 (12) | |
H5A | 0.0879 | −0.0446 | 0.8149 | 0.056* | |
H5B | −0.0006 | 0.0013 | 0.8398 | 0.056* | |
H5C | 0.0755 | −0.0130 | 0.9609 | 0.056* | |
C6 | 0.3447 (2) | 0.1490 (4) | 0.9015 (3) | 0.0175 (8) | |
C7 | 0.3480 (2) | 0.0556 (4) | 1.0113 (3) | 0.0205 (9) | |
H7A | 0.3250 | 0.0934 | 1.0818 | 0.025* | |
C8 | 0.3849 (2) | −0.0936 (4) | 1.0182 (4) | 0.0232 (9) | |
H8A | 0.3865 | −0.1587 | 1.0936 | 0.028* | |
C9 | 0.4196 (2) | −0.1501 (4) | 0.9174 (3) | 0.0207 (8) | |
C10 | 0.4153 (2) | −0.0534 (4) | 0.8082 (4) | 0.0234 (9) | |
H10A | 0.4384 | −0.0905 | 0.7378 | 0.028* | |
C11 | 0.3777 (2) | 0.0973 (4) | 0.7989 (4) | 0.0216 (9) | |
H11A | 0.3751 | 0.1625 | 0.7232 | 0.026* | |
C12 | 0.4589 (2) | −0.3151 (4) | 0.9248 (4) | 0.0292 (9) | |
H12A | 0.4816 | −0.3330 | 0.8466 | 0.044* | |
H12B | 0.4176 | −0.3975 | 0.9295 | 0.044* | |
H12C | 0.5028 | −0.3215 | 1.0032 | 0.044* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.0254 (6) | 0.0142 (4) | 0.0153 (5) | −0.0006 (5) | 0.0058 (4) | 0.0004 (5) |
O1 | 0.0359 (16) | 0.0207 (13) | 0.0121 (13) | −0.0013 (11) | 0.0068 (12) | 0.0009 (11) |
O2 | 0.0202 (14) | 0.0117 (11) | 0.0206 (14) | 0.0012 (10) | 0.0014 (11) | −0.0038 (11) |
N1 | 0.033 (2) | 0.0132 (14) | 0.0159 (18) | 0.0009 (14) | 0.0048 (16) | 0.0028 (14) |
N2 | 0.0220 (18) | 0.0200 (14) | 0.0118 (16) | −0.0046 (13) | 0.0039 (14) | 0.0012 (13) |
C1 | 0.043 (3) | 0.0160 (17) | 0.034 (2) | −0.0009 (19) | 0.007 (2) | 0.0012 (19) |
C2 | 0.039 (3) | 0.0219 (18) | 0.029 (2) | 0.0020 (18) | 0.010 (2) | −0.0100 (18) |
C3 | 0.023 (2) | 0.028 (2) | 0.017 (2) | −0.0006 (18) | 0.0033 (18) | 0.0026 (17) |
C4 | 0.030 (2) | 0.036 (2) | 0.030 (2) | 0.000 (2) | 0.008 (2) | −0.001 (2) |
C5 | 0.037 (3) | 0.027 (2) | 0.050 (3) | −0.0136 (19) | 0.014 (3) | −0.013 (2) |
C6 | 0.017 (2) | 0.0136 (17) | 0.023 (2) | 0.0033 (16) | 0.0056 (17) | −0.0037 (18) |
C7 | 0.027 (2) | 0.0175 (18) | 0.018 (2) | −0.0015 (17) | 0.0075 (18) | −0.0054 (17) |
C8 | 0.026 (2) | 0.0178 (18) | 0.025 (2) | −0.0033 (17) | 0.0036 (19) | 0.0023 (17) |
C9 | 0.020 (2) | 0.0163 (17) | 0.026 (2) | 0.0027 (17) | 0.0057 (18) | −0.0023 (18) |
C10 | 0.025 (2) | 0.028 (2) | 0.019 (2) | 0.0005 (17) | 0.0089 (19) | −0.0066 (18) |
C11 | 0.030 (2) | 0.0151 (17) | 0.022 (2) | 0.0002 (17) | 0.0086 (19) | 0.0010 (17) |
C12 | 0.030 (2) | 0.0192 (19) | 0.039 (2) | 0.0032 (18) | 0.007 (2) | −0.0010 (19) |
P1—O1 | 1.473 (2) | C4—H4B | 0.9800 |
P1—O2 | 1.607 (2) | C4—H4C | 0.9800 |
P1—N2 | 1.617 (2) | C5—H5A | 0.9800 |
P1—N1 | 1.645 (3) | C5—H5B | 0.9800 |
O2—C6 | 1.408 (3) | C5—H5C | 0.9800 |
N1—C1 | 1.454 (4) | C6—C11 | 1.370 (4) |
N1—C2 | 1.463 (4) | C6—C7 | 1.375 (4) |
N2—C3 | 1.462 (4) | C7—C8 | 1.379 (4) |
N2—H2 | 0.9055 | C7—H7A | 0.9500 |
C1—H1A | 0.9800 | C8—C9 | 1.384 (4) |
C1—H1B | 0.9800 | C8—H8A | 0.9500 |
C1—H1C | 0.9800 | C9—C10 | 1.383 (4) |
C2—H2A | 0.9800 | C9—C12 | 1.514 (4) |
C2—H2B | 0.9800 | C10—C11 | 1.394 (4) |
C2—H2C | 0.9800 | C10—H10A | 0.9500 |
C3—C4 | 1.517 (4) | C11—H11A | 0.9500 |
C3—C5 | 1.524 (4) | C12—H12A | 0.9800 |
C3—H3A | 1.0000 | C12—H12B | 0.9800 |
C4—H4A | 0.9800 | C12—H12C | 0.9800 |
O1—P1—O2 | 114.03 (13) | C3—C4—H4C | 109.5 |
O1—P1—N2 | 114.77 (14) | H4A—C4—H4C | 109.5 |
O2—P1—N2 | 102.76 (14) | H4B—C4—H4C | 109.5 |
O1—P1—N1 | 110.38 (14) | C3—C5—H5A | 109.5 |
O2—P1—N1 | 103.52 (14) | C3—C5—H5B | 109.5 |
N2—P1—N1 | 110.63 (13) | H5A—C5—H5B | 109.5 |
C6—O2—P1 | 120.3 (2) | C3—C5—H5C | 109.5 |
C1—N1—C2 | 114.3 (3) | H5A—C5—H5C | 109.5 |
C1—N1—P1 | 119.8 (2) | H5B—C5—H5C | 109.5 |
C2—N1—P1 | 119.4 (2) | C11—C6—C7 | 121.4 (3) |
C3—N2—P1 | 122.1 (2) | C11—C6—O2 | 119.8 (3) |
C3—N2—H2 | 115.9 | C7—C6—O2 | 118.8 (3) |
P1—N2—H2 | 115.2 | C6—C7—C8 | 119.4 (3) |
N1—C1—H1A | 109.5 | C6—C7—H7A | 120.3 |
N1—C1—H1B | 109.5 | C8—C7—H7A | 120.3 |
H1A—C1—H1B | 109.5 | C7—C8—C9 | 121.3 (3) |
N1—C1—H1C | 109.5 | C7—C8—H8A | 119.4 |
H1A—C1—H1C | 109.5 | C9—C8—H8A | 119.4 |
H1B—C1—H1C | 109.5 | C10—C9—C8 | 118.0 (3) |
N1—C2—H2A | 109.5 | C10—C9—C12 | 121.1 (3) |
N1—C2—H2B | 109.5 | C8—C9—C12 | 120.9 (3) |
H2A—C2—H2B | 109.5 | C9—C10—C11 | 121.7 (3) |
N1—C2—H2C | 109.5 | C9—C10—H10A | 119.2 |
H2A—C2—H2C | 109.5 | C11—C10—H10A | 119.2 |
H2B—C2—H2C | 109.5 | C6—C11—C10 | 118.3 (3) |
N2—C3—C4 | 111.7 (3) | C6—C11—H11A | 120.8 |
N2—C3—C5 | 108.8 (3) | C10—C11—H11A | 120.8 |
C4—C3—C5 | 111.2 (3) | C9—C12—H12A | 109.5 |
N2—C3—H3A | 108.3 | C9—C12—H12B | 109.5 |
C4—C3—H3A | 108.3 | H12A—C12—H12B | 109.5 |
C5—C3—H3A | 108.3 | C9—C12—H12C | 109.5 |
C3—C4—H4A | 109.5 | H12A—C12—H12C | 109.5 |
C3—C4—H4B | 109.5 | H12B—C12—H12C | 109.5 |
H4A—C4—H4B | 109.5 | ||
O1—P1—O2—C6 | −61.9 (2) | P1—N2—C3—C5 | 136.0 (2) |
N2—P1—O2—C6 | 62.9 (2) | P1—O2—C6—C11 | 83.0 (3) |
N1—P1—O2—C6 | 178.1 (2) | P1—O2—C6—C7 | −99.9 (3) |
O1—P1—N1—C1 | −31.4 (3) | C11—C6—C7—C8 | −0.3 (5) |
O2—P1—N1—C1 | 91.1 (3) | O2—C6—C7—C8 | −177.3 (3) |
N2—P1—N1—C1 | −159.5 (3) | C6—C7—C8—C9 | 0.9 (5) |
O1—P1—N1—C2 | 178.5 (2) | C7—C8—C9—C10 | −0.9 (5) |
O2—P1—N1—C2 | −59.1 (3) | C7—C8—C9—C12 | −179.0 (3) |
N2—P1—N1—C2 | 50.3 (3) | C8—C9—C10—C11 | 0.4 (5) |
O1—P1—N2—C3 | −48.3 (3) | C12—C9—C10—C11 | 178.6 (3) |
O2—P1—N2—C3 | −172.7 (2) | C7—C6—C11—C10 | −0.1 (5) |
N1—P1—N2—C3 | 77.4 (3) | O2—C6—C11—C10 | 176.9 (3) |
P1—N2—C3—C4 | −100.8 (3) | C9—C10—C11—C6 | 0.1 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.91 | 1.96 | 2.849 (4) | 169 |
Symmetry code: (i) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H21N2O2P |
Mr | 256.28 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 16.711 (5), 8.306 (2), 10.425 (3) |
β (°) | 101.963 (9) |
V (Å3) | 1415.6 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.21 × 0.09 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector |
Absorption correction | Multi-scan (APEX2; Bruker, 2005) |
Tmin, Tmax | 0.963, 0.987 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6264, 2779, 1418 |
Rint | 0.107 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.093, 1.00 |
No. of reflections | 2779 |
No. of parameters | 154 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.28 |
Computer programs: APEX2 (Bruker, 2005), APEX2 (Bruker, 2005, SHELXTL (Bruker, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.91 | 1.955 | 2.849 (4) | 169 |
Symmetry code: (i) x, −y+1/2, z+1/2. |
Acetylcholinesterase (AChE) enzyme inhibition by organophosphorus (OPs) compounds is well known (Ekstrom et al., 2006). It is generally governed by intramolecular properties (lipophilicity, electronic, steric) and three-dimensional structure of OPs (Singh, 1999). The range of herbicides which can be derived from OPs is very large indeed. For example, Amiprofos-methyl [O-methyl O-(4-methyl-2-nitrophenyl) N-isopropyl phosphoramidothioate] is a herbicidal organophosphate (Fest & Schmidt, 1982). In our previous work, we reported on the structure of N,N-dimethyl O-p-tolyl phosphoramidocyanidate (Ghadimi et al., 2007). Here, we report the synthesis and crystal structure of the title compound. The four different groups linked to P atom give rise to a distorted tetrahedral configuration (Figure 1). The bond angles around P atom are in the range of 102.76 (14)° [for O2—P1—N2 amgle] to 114.77 (14)° [for the O1—P1—N2 angle]. The P1—O2 bond length [1.607 (2) Å] is shorter than the P—O single bond length (1.64 Å; Corbridge, 1995). Also, the P—N bond lengths [P1—N1 = 1.645 (3) Å and P1—N2 = 1.617 (2) Å] are shorter than the P—N single bond length (1.77 Å; Corbridge, 1995). The sum of the surrounding angles around N1 nad N2 (about 353°) points to sp2 hybridization for the nitrogen atoms. Molecules are linked via N—H···O=P hydrogen bonds (Table 1, Fig. 2|) into one-dimensional chains parallel to the c axis.