Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989015002091/gk2625sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2056989015002091/gk2625Isup2.hkl |
CCDC reference: 1046561
Key indicators
- Single-crystal synchrotron study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.041
- wR factor = 0.115
- Data-to-parameter ratio = 18.7
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) Range 4.9 Ratio PLAT220_ALERT_2_C Large Non-Solvent O Ueq(max)/Ueq(min) Range 3.4 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Uiso(max)/Uiso(min) ... 6.3 Ratio PLAT934_ALERT_3_C Number of (Iobs-Icalc)/SigmaW > 10 Outliers .... 1 Check
Alert level G ABSMU01_ALERT_1_G Calculation of _exptl_absorpt_correction_mu not performed for this radiation type. PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF Please Do ! PLAT007_ALERT_5_G Number of Unrefined Donor-H Atoms .............. 3 Report PLAT380_ALERT_4_G Incorrectly? Oriented X(sp2)-Methyl Moiety ..... C11 Check PLAT791_ALERT_4_G The Model has Chirality at C22 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C32 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C42 (Chiral SPGR) S Verify PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 50 Note PLAT984_ALERT_1_G The C-f'= 0.003 Deviates from the B&C-Value 0.002 Check PLAT984_ALERT_1_G The N-f'= 0.006 Deviates from the B&C-Value 0.004 Check PLAT984_ALERT_1_G The O-f'= 0.011 Deviates from the B&C-Value 0.008 Check
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 4 ALERT level C = Check. Ensure it is not caused by an omission or oversight 11 ALERT level G = General information/check it is not something unexpected 4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check
Proteasomes are high-molecular-mass multicatalytic enzyme complexes localized in the nucleus and cytosol of all eukaryotic cells. As a part of the ubiquitin–proteasome pathway, the complex executes a remarkable set of functions, ranging from the complete destruction of abnormal and misfolded proteins to the specific proteolytic activation of crucial signaling molecules (Adams, 2003; Groll & Potts, 2011). The ubiquitin–proteasome pathway has been implicated in several forms of malignancy, in the pathogenesis of some autoimmune disorders, the aging process related cardiac dysfunction, diabetic complications, and neurodegenerative diseases (e.g. Alzheimer's, Parkinson's, Huntington's) (Dahlmann, 2007; Paul, 2008; Jankowska et al., 2013). Therefore, study of proteasome functions and the design and development of proteasome inhibitors is being pursued in many laboratories (Bennett & Kirk, 2008). A great amount of effort has been expended to explore proteasome inhibition as a novel targeted approach in cancer therapy. The first success came with FDA approval of Bortezomid for the treatment of multiple myeloma (Kane et al., 2006; Goldberg, 2012). Since then, numerous compounds have been reported to inhibit the components of the ubiquitin–proteasome system, and several new drug candidates undergoing clinical trials have emerged (Genin et al., 2010; Tsukamoto & Yokosawa, 2010; Frankland-Searby & Bhaumik, 2012; Jankowska et al., 2013). Peptide aldehydes were the first inhibitors designed to target the proteasome, and are still the most commonly used and best characterized group of such inhibitors (Kisselev et al., 2012). A notable one among them, Ac-Leu-Leu-Nle-H (ALLN, MG101), is also a potent inhibitor of nonproteasomal cysteine protease calpain I (Pietsch et al., 2010). ALLN, a cell-permeable tripeptide aldehyde reversible inhibitor of chymotripsin-like proteolytic activity of the proteasomes, was the first to be crystallized in a complex with an eukaryotic proteasome (Groll et al., 1997). Crystallographic analysis of the complex at 2.4 Å resolution revealed a structural organization of the proteasome and how the inhibitor binds to its active site. ALLN, as well as other peptide aldehydes, do it via reversible hemiacetal formation with the involvement of N-terminal threonine hydroxy group in the proteasome β-subunits (Borissenko & Groll, 2007). The aldehyde structure derived from the crystal complex coordinates was used in molecular modeling of inhibitor-proteasome interactions (Zhang et al., 2009). High resolution structural data from this study may provide better accuracy in future modeling of the inhibitor interactions with proteasome and other potential intracellular targets.
We report here the crystal structure of ALLN refined against 0.65 Å resolution diffraction data measured with synchrotron radiation. The molecule adopts an extended conformation of the backbone chain (Fig. 1) with the ϕ,ψ-torsion angles residing in the β region of the Ramachandran plot (Ramakrishnan & Ramachandran, 1965). All three consecutive peptide residues are in trans conformation and their ω angles are -179.42 (9), 173.77 (8), and 177.72 (10)°. The side chains of the two leucine and one norleucine residues have unstrained conformations, and do not deviate by more than 7° from either trans or gauche rotamers along the consecutive C—C bonds.
All of the peptide ALLN N and O atoms are engaged in intermolecular hydrogen bonds between molecules related by the crystallographic 21 axis, forming an infinite antiparallel β-sheet throughout the crystal (Fig. 2). The interactions between the sheets are mainly by the hydrophobic contacts of the aliphatic amino acid side chains.
The title aldehyde was prepared according to the general synthetic procedure reported by Schaschke et al. (1996), and a 45% overall yield was obtained. The product was crystallized from acetonitrile.
Crystal data, data collection and structure refinement details are summarized in Table 2. A needle-like crystal elongated in the a direction was selected, picked up in the rayon loop and then quickly cryo-cooled in a stream of cold nitrogen gas at the single-axis goniostat of the SER-CAT synchrotron station ID19 at the Advanced Photon Source, Argonne National Laboratory, USA. Diffraction images were collected with the use of MAR300 CCD detector in two passes differing in the effective exposure and resolution limits in order to adequately measure the weakest high-resolution reflections, as well as the strongest low-angle reflections without overloading detector pixels. All 38117 measured intensities from both passes were integrated, scaled and merged by HKL-2000 (Otwinowski & Minor, 1997) into the set of 4561 unique reflections with the overall Rmerge factor of 0.049. The data set is rather strong, with the I/σ(I) ratio equal to 25 at the highest resolution of 0.65 Å. H atoms were located in a difference synthesis (Fig. 3a) and refined as riding on their parent atoms in geometrically idealized positions. Because of the short wavelength of synchrotron radiation, all Friedel mates were averaged during data processing. The chirality of the molecule was deduced from the known chiral centres in the substrates used in chemical synthesis.
Data collection: sergui, SER-CAT APS beamline software; cell refinement: HKL-2000 (Otwinowski & Minor, 1997); data reduction: HKL-2000 (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXD (Sheldrick, 2008); program(s) used to refine structure: SHELXL (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windwows (Farrugia, 2012) and pyMOL (DeLano, 2002); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C20H37N3O4 | F(000) = 460 |
Mr = 383.59 | Dx = 1.110 Mg m−3 |
Monoclinic, P21 | Synchrotron radiation, λ = 0.6199 Å |
a = 10.85 (1) Å | θ = 1.5–28.4° |
b = 9.510 (9) Å | µ = 0.09 mm−1 |
c = 11.200 (11) Å | T = 100 K |
β = 94.85 (2)° | Needle, colourless |
V = 1152 (2) Å3 | 0.30 × 0.05 × 0.02 mm |
Z = 2 |
MAR300 CCD diffractometer | 4561 independent reflections |
Radiation source: SER-CAT 22ID synchrotron beamline, APS, USA | 4492 reflections with I > 2σ(I) |
Si111 double crystal monochromator | Rint = 0.049 |
ω scans | θmax = 28.4°, θmin = 1.5° |
Absorption correction: multi-scan (SCALEPACK; Otwinowski et al., 2003) | h = 0→16 |
Tmin = 0.974, Tmax = 0.999 | k = 0→14 |
4561 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.115 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.081P)2 + 0.1533P] where P = (Fo2 + 2Fc2)/3 |
4561 reflections | (Δ/σ)max < 0.001 |
244 parameters | Δρmax = 0.44 e Å−3 |
1 restraint | Δρmin = −0.29 e Å−3 |
C20H37N3O4 | V = 1152 (2) Å3 |
Mr = 383.59 | Z = 2 |
Monoclinic, P21 | Synchrotron radiation, λ = 0.6199 Å |
a = 10.85 (1) Å | µ = 0.09 mm−1 |
b = 9.510 (9) Å | T = 100 K |
c = 11.200 (11) Å | 0.30 × 0.05 × 0.02 mm |
β = 94.85 (2)° |
MAR300 CCD diffractometer | 4561 independent reflections |
Absorption correction: multi-scan (SCALEPACK; Otwinowski et al., 2003) | 4492 reflections with I > 2σ(I) |
Tmin = 0.974, Tmax = 0.999 | Rint = 0.049 |
4561 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 1 restraint |
wR(F2) = 0.115 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.44 e Å−3 |
4561 reflections | Δρmin = −0.29 e Å−3 |
244 parameters |
Experimental. diffraction data were measured at the station 22ID of the APS synchrotron by rotation method a in three sweeps of different exposure and all data were scaled and merged into one data set |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C10 | 0.26159 (10) | 0.47871 (12) | 0.27033 (9) | 0.01223 (18) | |
C11 | 0.14253 (11) | 0.53384 (15) | 0.20793 (12) | 0.0195 (2) | |
H101 | 0.1486 | 0.6359 | 0.1981 | 0.029* | |
H102 | 0.0737 | 0.5120 | 0.2562 | 0.029* | |
H103 | 0.1280 | 0.4893 | 0.1291 | 0.029* | |
O12 | 0.27570 (9) | 0.35222 (10) | 0.29248 (11) | 0.02159 (19) | |
N20 | 0.34966 (8) | 0.57472 (10) | 0.29951 (8) | 0.01103 (15) | |
H201 | 0.3336 | 0.6633 | 0.2818 | 0.013* | |
C21 | 0.48033 (9) | 0.60494 (11) | 0.48414 (8) | 0.00972 (16) | |
O21 | 0.46004 (9) | 0.73127 (9) | 0.49827 (7) | 0.01513 (16) | |
C22 | 0.47046 (9) | 0.54014 (11) | 0.35897 (8) | 0.00941 (16) | |
H221 | 0.4804 | 0.4358 | 0.3648 | 0.011* | |
C23 | 0.57151 (10) | 0.60292 (12) | 0.28663 (10) | 0.01324 (18) | |
H231 | 0.5686 | 0.5542 | 0.2083 | 0.016* | |
H232 | 0.5515 | 0.7031 | 0.2705 | 0.016* | |
C24 | 0.70443 (11) | 0.59414 (15) | 0.34574 (12) | 0.0197 (2) | |
H241 | 0.7063 | 0.6398 | 0.4263 | 0.024* | |
C25 | 0.79082 (15) | 0.6765 (2) | 0.2697 (2) | 0.0362 (4) | |
H251 | 0.7606 | 0.7731 | 0.2589 | 0.054* | |
H252 | 0.7927 | 0.6312 | 0.1913 | 0.054* | |
H253 | 0.8744 | 0.6777 | 0.3103 | 0.054* | |
C26 | 0.75042 (14) | 0.44426 (18) | 0.36297 (19) | 0.0322 (3) | |
H261 | 0.6947 | 0.3922 | 0.4114 | 0.048* | |
H262 | 0.8339 | 0.4450 | 0.4040 | 0.048* | |
H263 | 0.7524 | 0.3987 | 0.2847 | 0.048* | |
N30 | 0.51541 (8) | 0.51775 (10) | 0.57466 (8) | 0.01027 (15) | |
H301 | 0.5237 | 0.4274 | 0.5606 | 0.012* | |
C31 | 0.65117 (9) | 0.49218 (11) | 0.75420 (9) | 0.01002 (17) | |
O31 | 0.64628 (8) | 0.36532 (9) | 0.77767 (8) | 0.01517 (16) | |
C32 | 0.53994 (9) | 0.57155 (11) | 0.69646 (8) | 0.00945 (16) | |
H321 | 0.5607 | 0.6738 | 0.6928 | 0.011* | |
C33 | 0.42768 (10) | 0.55287 (12) | 0.76899 (9) | 0.01255 (18) | |
H331 | 0.4034 | 0.4525 | 0.7665 | 0.015* | |
H332 | 0.3578 | 0.6075 | 0.7299 | 0.015* | |
C34 | 0.44800 (10) | 0.59874 (13) | 0.90039 (9) | 0.01353 (18) | |
H341 | 0.5167 | 0.5408 | 0.9400 | 0.016* | |
C35 | 0.48372 (15) | 0.75302 (16) | 0.91469 (12) | 0.0239 (3) | |
H351 | 0.4956 | 0.7765 | 1.0001 | 0.036* | |
H352 | 0.4178 | 0.8118 | 0.8759 | 0.036* | |
H353 | 0.5608 | 0.7701 | 0.8773 | 0.036* | |
C36 | 0.33127 (12) | 0.56946 (18) | 0.96323 (11) | 0.0233 (3) | |
H361 | 0.3442 | 0.5988 | 1.0472 | 0.035* | |
H362 | 0.3128 | 0.4686 | 0.9594 | 0.035* | |
H363 | 0.2618 | 0.6221 | 0.9235 | 0.035* | |
N40 | 0.75393 (9) | 0.56824 (11) | 0.77879 (9) | 0.01460 (17) | |
H401 | 0.7556 | 0.6578 | 0.7593 | 0.018* | |
C41 | 0.83380 (14) | 0.45232 (19) | 0.96234 (14) | 0.0283 (3) | |
H411 | 0.7627 | 0.4898 | 0.9949 | 0.034* | |
O41 | 0.89574 (15) | 0.3697 (2) | 1.02126 (16) | 0.0518 (5) | |
C42 | 0.86236 (11) | 0.50104 (14) | 0.83793 (12) | 0.0187 (2) | |
H421 | 0.8849 | 0.4177 | 0.7898 | 0.022* | |
C43 | 0.97094 (12) | 0.60363 (17) | 0.84929 (13) | 0.0235 (2) | |
H431 | 1.0416 | 0.5583 | 0.8960 | 0.028* | |
H432 | 0.9471 | 0.6874 | 0.8945 | 0.028* | |
C44 | 1.01242 (12) | 0.65110 (17) | 0.72874 (14) | 0.0244 (3) | |
H441 | 0.9426 | 0.6996 | 0.6833 | 0.029* | |
H442 | 1.0805 | 0.7200 | 0.7432 | 0.029* | |
C45 | 1.05617 (19) | 0.5319 (2) | 0.65273 (18) | 0.0373 (4) | |
H451 | 0.9855 | 0.4686 | 0.6307 | 0.045* | |
H452 | 1.1196 | 0.4770 | 0.7013 | 0.045* | |
C46 | 1.1102 (2) | 0.5807 (3) | 0.53884 (19) | 0.0458 (5) | |
H461 | 1.1363 | 0.4987 | 0.4943 | 0.069* | |
H462 | 1.1818 | 0.6414 | 0.5597 | 0.069* | |
H463 | 1.0474 | 0.6333 | 0.4891 | 0.069* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C10 | 0.0124 (4) | 0.0105 (4) | 0.0138 (4) | 0.0002 (3) | 0.0009 (3) | −0.0023 (3) |
C11 | 0.0134 (4) | 0.0200 (6) | 0.0243 (5) | 0.0018 (4) | −0.0028 (4) | 0.0005 (4) |
O12 | 0.0181 (4) | 0.0080 (4) | 0.0378 (5) | −0.0016 (3) | −0.0023 (3) | −0.0013 (4) |
N20 | 0.0141 (3) | 0.0063 (3) | 0.0121 (3) | 0.0006 (3) | −0.0030 (3) | 0.0008 (3) |
C21 | 0.0143 (4) | 0.0062 (4) | 0.0083 (4) | 0.0003 (3) | −0.0016 (3) | −0.0008 (3) |
O21 | 0.0277 (4) | 0.0051 (3) | 0.0119 (3) | 0.0031 (3) | −0.0024 (3) | −0.0008 (3) |
C22 | 0.0135 (4) | 0.0060 (4) | 0.0082 (3) | 0.0008 (3) | −0.0019 (3) | −0.0008 (3) |
C23 | 0.0150 (4) | 0.0110 (4) | 0.0139 (4) | 0.0012 (3) | 0.0020 (3) | −0.0001 (3) |
C24 | 0.0141 (4) | 0.0181 (5) | 0.0267 (5) | 0.0019 (4) | 0.0008 (4) | −0.0001 (4) |
C25 | 0.0208 (6) | 0.0296 (8) | 0.0591 (11) | −0.0023 (6) | 0.0089 (6) | 0.0118 (8) |
C26 | 0.0195 (5) | 0.0219 (7) | 0.0548 (10) | 0.0055 (5) | 0.0012 (6) | 0.0079 (7) |
N30 | 0.0172 (4) | 0.0056 (3) | 0.0075 (3) | 0.0006 (3) | −0.0020 (3) | −0.0005 (3) |
C31 | 0.0132 (4) | 0.0072 (4) | 0.0092 (3) | 0.0003 (3) | −0.0015 (3) | −0.0003 (3) |
O31 | 0.0204 (4) | 0.0062 (3) | 0.0180 (3) | −0.0007 (3) | −0.0035 (3) | 0.0011 (3) |
C32 | 0.0137 (4) | 0.0065 (4) | 0.0077 (3) | 0.0000 (3) | −0.0015 (3) | −0.0008 (3) |
C33 | 0.0133 (4) | 0.0132 (4) | 0.0109 (4) | −0.0011 (3) | −0.0002 (3) | −0.0013 (3) |
C34 | 0.0167 (4) | 0.0143 (5) | 0.0096 (4) | 0.0008 (4) | 0.0013 (3) | −0.0005 (3) |
C35 | 0.0375 (7) | 0.0162 (6) | 0.0185 (5) | −0.0037 (5) | 0.0052 (5) | −0.0075 (4) |
C36 | 0.0211 (5) | 0.0331 (7) | 0.0164 (5) | 0.0007 (5) | 0.0065 (4) | 0.0021 (5) |
N40 | 0.0135 (4) | 0.0083 (4) | 0.0209 (4) | −0.0013 (3) | −0.0051 (3) | 0.0030 (3) |
C41 | 0.0235 (6) | 0.0324 (8) | 0.0273 (6) | −0.0049 (5) | −0.0078 (5) | 0.0109 (6) |
O41 | 0.0423 (7) | 0.0570 (11) | 0.0533 (9) | 0.0014 (7) | −0.0120 (6) | 0.0360 (8) |
C42 | 0.0142 (4) | 0.0163 (5) | 0.0242 (5) | −0.0006 (4) | −0.0061 (4) | 0.0056 (4) |
C43 | 0.0170 (5) | 0.0249 (6) | 0.0276 (6) | −0.0069 (5) | −0.0039 (4) | 0.0006 (5) |
C44 | 0.0181 (5) | 0.0226 (6) | 0.0323 (6) | −0.0030 (5) | 0.0002 (4) | 0.0042 (5) |
C45 | 0.0417 (9) | 0.0321 (9) | 0.0394 (8) | −0.0022 (7) | 0.0114 (7) | −0.0022 (7) |
C46 | 0.0419 (9) | 0.0611 (15) | 0.0356 (8) | −0.0080 (10) | 0.0094 (7) | −0.0023 (9) |
C10—O12 | 1.2351 (19) | C33—C34 | 1.533 (2) |
C10—N20 | 1.3420 (17) | C33—H331 | 0.9900 |
C10—C11 | 1.5097 (19) | C33—H332 | 0.9900 |
C11—H101 | 0.9800 | C34—C35 | 1.522 (2) |
C11—H102 | 0.9800 | C34—C36 | 1.526 (2) |
C11—H103 | 0.9800 | C34—H341 | 1.0000 |
N20—C22 | 1.4567 (17) | C35—H351 | 0.9800 |
N20—H201 | 0.8800 | C35—H352 | 0.9800 |
C21—O21 | 1.2340 (18) | C35—H353 | 0.9800 |
C21—N30 | 1.3398 (16) | C36—H361 | 0.9800 |
C21—C22 | 1.5268 (19) | C36—H362 | 0.9800 |
C22—C23 | 1.5380 (18) | C36—H363 | 0.9800 |
C22—H221 | 1.0000 | N40—C42 | 1.4489 (17) |
C23—C24 | 1.537 (2) | N40—H401 | 0.8800 |
C23—H231 | 0.9900 | C41—O41 | 1.196 (2) |
C23—H232 | 0.9900 | C41—C42 | 1.525 (2) |
C24—C26 | 1.517 (3) | C41—H411 | 0.9500 |
C24—C25 | 1.534 (2) | C42—C43 | 1.527 (2) |
C24—H241 | 1.0000 | C42—H421 | 1.0000 |
C25—H251 | 0.9800 | C43—C44 | 1.527 (2) |
C25—H252 | 0.9800 | C43—H431 | 0.9900 |
C25—H253 | 0.9800 | C43—H432 | 0.9900 |
C26—H261 | 0.9800 | C44—C45 | 1.517 (3) |
C26—H262 | 0.9800 | C44—H441 | 0.9900 |
C26—H263 | 0.9800 | C44—H442 | 0.9900 |
N30—C32 | 1.4602 (18) | C45—C46 | 1.521 (3) |
N30—H301 | 0.8800 | C45—H451 | 0.9900 |
C31—O31 | 1.2369 (18) | C45—H452 | 0.9900 |
C31—N40 | 1.3380 (16) | C46—H461 | 0.9800 |
C31—C32 | 1.5207 (17) | C46—H462 | 0.9800 |
C32—C33 | 1.5305 (18) | C46—H463 | 0.9800 |
C32—H321 | 1.0000 | ||
O12—C10—N20 | 122.69 (12) | C34—C33—H331 | 108.6 |
O12—C10—C11 | 121.19 (11) | C32—C33—H332 | 108.6 |
N20—C10—C11 | 116.12 (12) | C34—C33—H332 | 108.6 |
C10—C11—H101 | 109.5 | H331—C33—H332 | 107.5 |
C10—C11—H102 | 109.5 | C35—C34—C36 | 109.95 (11) |
H101—C11—H102 | 109.5 | C35—C34—C33 | 112.95 (10) |
C10—C11—H103 | 109.5 | C36—C34—C33 | 109.47 (10) |
H101—C11—H103 | 109.5 | C35—C34—H341 | 108.1 |
H102—C11—H103 | 109.5 | C36—C34—H341 | 108.1 |
C10—N20—C22 | 123.53 (11) | C33—C34—H341 | 108.1 |
C10—N20—H201 | 118.2 | C34—C35—H351 | 109.5 |
C22—N20—H201 | 118.2 | C34—C35—H352 | 109.5 |
O21—C21—N30 | 123.22 (11) | H351—C35—H352 | 109.5 |
O21—C21—C22 | 120.75 (9) | C34—C35—H353 | 109.5 |
N30—C21—C22 | 116.00 (11) | H351—C35—H353 | 109.5 |
N20—C22—C21 | 108.61 (9) | H352—C35—H353 | 109.5 |
N20—C22—C23 | 108.99 (10) | C34—C36—H361 | 109.5 |
C21—C22—C23 | 109.22 (10) | C34—C36—H362 | 109.5 |
N20—C22—H221 | 110.0 | H361—C36—H362 | 109.5 |
C21—C22—H221 | 110.0 | C34—C36—H363 | 109.5 |
C23—C22—H221 | 110.0 | H361—C36—H363 | 109.5 |
C24—C23—C22 | 115.88 (11) | H362—C36—H363 | 109.5 |
C24—C23—H231 | 108.3 | C31—N40—C42 | 119.07 (12) |
C22—C23—H231 | 108.3 | C31—N40—H401 | 120.5 |
C24—C23—H232 | 108.3 | C42—N40—H401 | 120.5 |
C22—C23—H232 | 108.3 | O41—C41—C42 | 123.77 (18) |
H231—C23—H232 | 107.4 | O41—C41—H411 | 118.1 |
C26—C24—C25 | 109.90 (13) | C42—C41—H411 | 118.1 |
C26—C24—C23 | 113.10 (11) | N40—C42—C41 | 109.39 (12) |
C25—C24—C23 | 109.16 (13) | N40—C42—C43 | 110.32 (13) |
C26—C24—H241 | 108.2 | C41—C42—C43 | 109.45 (11) |
C25—C24—H241 | 108.2 | N40—C42—H421 | 109.2 |
C23—C24—H241 | 108.2 | C41—C42—H421 | 109.2 |
C24—C25—H251 | 109.5 | C43—C42—H421 | 109.2 |
C24—C25—H252 | 109.5 | C42—C43—C44 | 113.48 (12) |
H251—C25—H252 | 109.5 | C42—C43—H431 | 108.9 |
C24—C25—H253 | 109.5 | C44—C43—H431 | 108.9 |
H251—C25—H253 | 109.5 | C42—C43—H432 | 108.9 |
H252—C25—H253 | 109.5 | C44—C43—H432 | 108.9 |
C24—C26—H261 | 109.5 | H431—C43—H432 | 107.7 |
C24—C26—H262 | 109.5 | C45—C44—C43 | 113.88 (15) |
H261—C26—H262 | 109.5 | C45—C44—H441 | 108.8 |
C24—C26—H263 | 109.5 | C43—C44—H441 | 108.8 |
H261—C26—H263 | 109.5 | C45—C44—H442 | 108.8 |
H262—C26—H263 | 109.5 | C43—C44—H442 | 108.8 |
C21—N30—C32 | 120.51 (11) | H441—C44—H442 | 107.7 |
C21—N30—H301 | 119.7 | C44—C45—C46 | 113.8 (2) |
C32—N30—H301 | 119.7 | C44—C45—H451 | 108.8 |
O31—C31—N40 | 122.24 (11) | C46—C45—H451 | 108.8 |
O31—C31—C32 | 121.86 (10) | C44—C45—H452 | 108.8 |
N40—C31—C32 | 115.90 (11) | C46—C45—H452 | 108.8 |
N30—C32—C31 | 107.38 (9) | H451—C45—H452 | 107.7 |
N30—C32—C33 | 111.39 (9) | C45—C46—H461 | 109.5 |
C31—C32—C33 | 110.81 (10) | C45—C46—H462 | 109.5 |
N30—C32—H321 | 109.1 | H461—C46—H462 | 109.5 |
C31—C32—H321 | 109.1 | C45—C46—H463 | 109.5 |
C33—C32—H321 | 109.1 | H461—C46—H463 | 109.5 |
C32—C33—C34 | 114.85 (10) | H462—C46—H463 | 109.5 |
C32—C33—H331 | 108.6 | ||
O12—C10—N20—C22 | 0.51 (17) | N40—C31—C32—N30 | 112.91 (11) |
C11—C10—N20—C22 | −179.42 (9) | O31—C31—C32—C33 | 54.24 (13) |
C10—N20—C22—C21 | −113.52 (11) | N40—C31—C32—C33 | −125.23 (10) |
C10—N20—C22—C23 | 127.58 (11) | N30—C32—C33—C34 | 176.58 (9) |
O21—C21—C22—N20 | −53.20 (13) | C31—C32—C33—C34 | 57.10 (13) |
N30—C21—C22—N20 | 128.72 (9) | C32—C33—C34—C35 | 59.28 (13) |
O21—C21—C22—C23 | 65.55 (14) | C32—C33—C34—C36 | −177.85 (10) |
N30—C21—C22—C23 | −112.52 (11) | O31—C31—N40—C42 | −1.75 (17) |
N20—C22—C23—C24 | 171.82 (10) | C32—C31—N40—C42 | 177.72 (10) |
C21—C22—C23—C24 | 53.30 (13) | C31—N40—C42—C41 | −63.52 (15) |
C22—C23—C24—C26 | 64.09 (15) | C31—N40—C42—C43 | 176.03 (11) |
C22—C23—C24—C25 | −173.23 (12) | O41—C41—C42—N40 | 164.16 (18) |
O21—C21—N30—C32 | −4.26 (16) | O41—C41—C42—C43 | −74.9 (2) |
C22—C21—N30—C32 | 173.77 (9) | N40—C42—C43—C44 | −63.46 (16) |
C21—N30—C32—C31 | −141.31 (10) | C41—C42—C43—C44 | 176.13 (13) |
C21—N30—C32—C33 | 97.19 (12) | C42—C43—C44—C45 | −60.78 (18) |
O31—C31—C32—N30 | −67.62 (13) | C43—C44—C45—C46 | −173.82 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N20—H201···O31i | 0.88 | 2.05 | 2.897 (3) | 161 |
N30—H301···O21ii | 0.88 | 1.99 | 2.863 (3) | 171 |
N40—H401···O12i | 0.88 | 1.96 | 2.827 (3) | 169 |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) −x+1, y−1/2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N20—H201···O31i | 0.88 | 2.05 | 2.897 (3) | 161.1 |
N30—H301···O21ii | 0.88 | 1.99 | 2.863 (3) | 171.0 |
N40—H401···O12i | 0.88 | 1.96 | 2.827 (3) | 168.6 |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) −x+1, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C20H37N3O4 |
Mr | 383.59 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 10.85 (1), 9.510 (9), 11.200 (11) |
β (°) | 94.85 (2) |
V (Å3) | 1152 (2) |
Z | 2 |
Radiation type | Synchrotron, λ = 0.6199 Å |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.30 × 0.05 × 0.02 |
Data collection | |
Diffractometer | MAR300 CCD diffractometer |
Absorption correction | Multi-scan (SCALEPACK; Otwinowski et al., 2003) |
Tmin, Tmax | 0.974, 0.999 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4561, 4561, 4492 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.767 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.115, 1.07 |
No. of reflections | 4561 |
No. of parameters | 244 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.44, −0.29 |
Computer programs: sergui, SER-CAT APS beamline software, HKL-2000 (Otwinowski & Minor, 1997), SHELXD (Sheldrick, 2008), SHELXL (Sheldrick, 2008), ORTEP-3 for Windwows (Farrugia, 2012) and pyMOL (DeLano, 2002), SHELXL97 (Sheldrick, 2008).