The title compound, C
10H
12O
5N
2, crystallizes with two independent molecules in the asymmetric unit. The molecules in the crystal structure are arranged into one-dimensional substructural ribbon motifs stabilized by a combination of two O—H
O and three N—H
O intermolecular hydrogen bonds, and also augmented by short C=O
C=O carbonyl–carbonyl interactions. Two intermolecular C—H
O short contacts between adjacent ribbons generate complex two-dimensional sheets on the
ab plane. Adjacent sheets are linked
via C—H
π(arene) interactions, resulting in a complex three-dimensional framework.
Supporting information
CCDC reference: 641823
The synthesis of benzyl (3S)-1-hydroxy-2,5-dioxopyrrolidin-3-ylcarbamate
was carried out according to the following procedure. Cbz-L-aspartic
acid anhydride (1 g, 4 mmol) was added to a solution of hydroxylamine
hydrochloride NH3(OH)Cl (0.30 g, 4 mmol) and NaOH (0.16 g, 4 mmol) dissolved
in a water–dioxane mixture (1:1 v/v; 4 ml). The solution was
stirred for 15 min at room temperature and then for 1 h at 323 K. The water
and dioxane were then evaporated under reduced pressure and the residue was
heated at 398 K for 20 min in vacuo. The product was extracted with
anhydrous ethyl acetate (30 ml). Single crystals of (I) were obtained by slow
evaporation from an ethyl acetate solution (yield 77%; m.p. 413–414.5 K). The
crystals of (I) are hygroscopic and not stable in air; on removal from the
ethyl acetate solution they become matt and break. Analysis: [α]D24 =
-39.7° (c = 1.40, MeOH); ESI–MS m/z 287
[MNa]+.
The absolute configuration of the chiral C atom was established in agreement
with the absolute configuration of the L-enantiomer of aspartic acid,
which was used for the synthesis of the compound (I). Friedel opposites were
merged for the refinement. Other investigations showed the lack of
racemization in the synthetic route of the present compound (Stefanowicz et
al., 2006). Only the aliphatic and aromatic H atoms were positioned
geometrically and refined as riding on their parent atoms, with C—H =
0.95–1.00 Å and Uiso(H) = 1.2Ueq(C). Other H atoms were
located in a difference Fourier map and their positions refined, with N—H =
0.84 (3) Å and O—H = 0.80 (3)–0.87 (3) Å; their Uiso(H) values
were constrained to 1.2Ueq(parent atom). [Please check
rephrasing]
Data collection: KM-4 CCD Software (Oxford Diffraction, 2004); cell refinement: KM-4 CCD Software; data reduction: KM-4 CCD Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP in SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXL97.
(3
S)-Benzyl
N-(1-hydroxy-2,5-dioxopyrrolidin-3-yl)carbamate
top
Crystal data top
C12H12N2O5 | F(000) = 552 |
Mr = 264.24 | Dx = 1.477 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 5987 reflections |
a = 12.910 (3) Å | θ = 3.2–30.0° |
b = 7.077 (4) Å | µ = 0.12 mm−1 |
c = 14.001 (3) Å | T = 100 K |
β = 111.67 (3)° | Plate, colourless |
V = 1188.8 (8) Å3 | 0.28 × 0.25 × 0.20 mm |
Z = 4 | |
Data collection top
Oxford KM4 CCD area-detector diffractometer | 3070 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.043 |
Graphite monochromator | θmax = 30.0°, θmin = 3.2° |
Detector resolution: 0 pixels mm-1 | h = −18→14 |
ω scans | k = −9→9 |
17662 measured reflections | l = −19→19 |
3640 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.083 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0473P)2] where P = (Fo2 + 2Fc2)/3 |
3640 reflections | (Δ/σ)max < 0.001 |
355 parameters | Δρmax = 0.22 e Å−3 |
1 restraint | Δρmin = −0.22 e Å−3 |
Crystal data top
C12H12N2O5 | V = 1188.8 (8) Å3 |
Mr = 264.24 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 12.910 (3) Å | µ = 0.12 mm−1 |
b = 7.077 (4) Å | T = 100 K |
c = 14.001 (3) Å | 0.28 × 0.25 × 0.20 mm |
β = 111.67 (3)° | |
Data collection top
Oxford KM4 CCD area-detector diffractometer | 3070 reflections with I > 2σ(I) |
17662 measured reflections | Rint = 0.043 |
3640 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.040 | 1 restraint |
wR(F2) = 0.083 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.22 e Å−3 |
3640 reflections | Δρmin = −0.22 e Å−3 |
355 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
2σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1A | 0.70860 (12) | 0.2164 (2) | 0.48559 (12) | 0.0289 (4) | |
O2A | 0.79722 (13) | 0.1400 (2) | 0.33584 (11) | 0.0243 (3) | |
H1A | 0.766 (2) | 0.032 (4) | 0.3117 (19) | 0.029* | |
O3A | 1.00027 (13) | −0.0542 (2) | 0.42948 (13) | 0.0320 (4) | |
O4A | 0.79080 (12) | 0.2630 (2) | 0.74929 (11) | 0.0214 (3) | |
O5A | 0.74498 (12) | −0.0335 (2) | 0.78135 (11) | 0.0205 (3) | |
N1A | 0.84965 (14) | 0.1030 (2) | 0.43960 (13) | 0.0193 (4) | |
N2A | 0.83702 (15) | 0.0016 (3) | 0.67733 (14) | 0.0210 (4) | |
H2NA | 0.823 (2) | −0.114 (4) | 0.6695 (18) | 0.025* | |
C1A | 0.80102 (16) | 0.1503 (3) | 0.50842 (15) | 0.0192 (4) | |
C2A | 0.88554 (16) | 0.1060 (3) | 0.61501 (15) | 0.0196 (4) | |
H2A | 0.9159 | 0.2278 | 0.6505 | 0.024* | |
C3A | 0.98004 (16) | 0.0006 (3) | 0.59489 (16) | 0.0223 (4) | |
H31A | 1.0526 | 0.0631 | 0.6313 | 0.027* | |
H32A | 0.9847 | −0.1320 | 0.6186 | 0.027* | |
C4A | 0.95052 (16) | 0.0083 (3) | 0.48021 (16) | 0.0219 (4) | |
C5A | 0.79084 (16) | 0.0917 (3) | 0.73619 (15) | 0.0179 (4) | |
C6A | 0.71173 (16) | 0.0379 (3) | 0.86245 (15) | 0.0201 (4) | |
H61A | 0.6525 | −0.0440 | 0.8690 | 0.024* | |
H62A | 0.6807 | 0.1667 | 0.8444 | 0.024* | |
C7A | 0.80870 (16) | 0.0439 (3) | 0.96372 (15) | 0.0180 (4) | |
C8A | 0.79748 (17) | 0.1455 (3) | 1.04528 (16) | 0.0218 (4) | |
H8A | 0.7303 | 0.2120 | 1.0351 | 0.026* | |
C9A | 0.88372 (18) | 0.1498 (3) | 1.14095 (16) | 0.0248 (4) | |
H9A | 0.8757 | 0.2199 | 1.1957 | 0.030* | |
C10A | 0.98165 (18) | 0.0513 (3) | 1.15624 (17) | 0.0266 (5) | |
H10A | 1.0408 | 0.0536 | 1.2215 | 0.032* | |
C11A | 0.99277 (17) | −0.0503 (3) | 1.07613 (16) | 0.0263 (5) | |
H11A | 1.0596 | −0.1181 | 1.0867 | 0.032* | |
C12A | 0.90701 (16) | −0.0540 (3) | 0.98037 (16) | 0.0226 (4) | |
H12A | 0.9157 | −0.1240 | 0.9259 | 0.027* | |
O3B | 0.51201 (12) | 0.4240 (2) | 0.56098 (12) | 0.0296 (4) | |
O2B | 0.72170 (13) | 0.5982 (2) | 0.65733 (11) | 0.0238 (3) | |
H1B | 0.741 (2) | 0.494 (4) | 0.6791 (19) | 0.029* | |
O1B | 0.79804 (12) | 0.7224 (2) | 0.50629 (12) | 0.0271 (3) | |
O4B | 0.69593 (12) | 0.8229 (2) | 0.24594 (11) | 0.0238 (3) | |
O5B | 0.74485 (11) | 0.5468 (2) | 0.19123 (11) | 0.0199 (3) | |
N1B | 0.66311 (13) | 0.5835 (2) | 0.55306 (12) | 0.0187 (4) | |
N2B | 0.66563 (14) | 0.5380 (3) | 0.30778 (13) | 0.0197 (4) | |
H2NB | 0.6846 (19) | 0.424 (4) | 0.3122 (17) | 0.024* | |
C4B | 0.56044 (16) | 0.4951 (3) | 0.51081 (16) | 0.0206 (4) | |
C3B | 0.52739 (16) | 0.5038 (3) | 0.39590 (16) | 0.0221 (4) | |
H31B | 0.4535 | 0.5645 | 0.3635 | 0.027* | |
H32B | 0.5240 | 0.3753 | 0.3669 | 0.027* | |
C2B | 0.61842 (16) | 0.6223 (3) | 0.37743 (15) | 0.0198 (4) | |
H2B | 0.5862 | 0.7482 | 0.3494 | 0.024* | |
C1B | 0.70671 (16) | 0.6509 (3) | 0.48407 (15) | 0.0183 (4) | |
C5B | 0.70265 (16) | 0.6496 (3) | 0.24930 (14) | 0.0181 (4) | |
C6B | 0.77324 (16) | 0.6497 (3) | 0.11328 (15) | 0.0209 (4) | |
H61B | 0.8393 | 0.5908 | 0.1056 | 0.025* | |
H62B | 0.7923 | 0.7820 | 0.1358 | 0.025* | |
C7B | 0.67727 (16) | 0.6474 (3) | 0.01147 (15) | 0.0190 (4) | |
C8B | 0.68887 (17) | 0.5607 (3) | −0.07384 (17) | 0.0217 (4) | |
H8B | 0.7580 | 0.5042 | −0.0670 | 0.026* | |
C9B | 0.60116 (17) | 0.5559 (3) | −0.16815 (16) | 0.0241 (4) | |
H9B | 0.6103 | 0.4966 | −0.2254 | 0.029* | |
C10B | 0.50023 (17) | 0.6379 (3) | −0.17846 (17) | 0.0240 (4) | |
H10B | 0.4395 | 0.6327 | −0.2426 | 0.029* | |
C11B | 0.48770 (17) | 0.7279 (3) | −0.09499 (16) | 0.0255 (5) | |
H11B | 0.4188 | 0.7864 | −0.1028 | 0.031* | |
C12B | 0.57518 (16) | 0.7325 (3) | −0.00050 (16) | 0.0233 (4) | |
H12B | 0.5659 | 0.7934 | 0.0563 | 0.028* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1A | 0.0275 (8) | 0.0308 (9) | 0.0296 (8) | 0.0091 (7) | 0.0119 (7) | 0.0030 (7) |
O2A | 0.0360 (8) | 0.0195 (8) | 0.0161 (7) | −0.0004 (7) | 0.0082 (6) | 0.0005 (6) |
O3A | 0.0361 (8) | 0.0307 (9) | 0.0381 (9) | 0.0067 (8) | 0.0240 (8) | 0.0012 (8) |
O4A | 0.0280 (7) | 0.0175 (8) | 0.0192 (7) | −0.0015 (6) | 0.0093 (6) | −0.0004 (6) |
O5A | 0.0280 (7) | 0.0173 (8) | 0.0202 (7) | −0.0030 (6) | 0.0138 (6) | −0.0005 (6) |
N1A | 0.0248 (9) | 0.0188 (9) | 0.0149 (8) | 0.0006 (7) | 0.0081 (7) | 0.0014 (6) |
N2A | 0.0295 (9) | 0.0153 (9) | 0.0211 (9) | −0.0032 (8) | 0.0130 (7) | −0.0005 (7) |
C1A | 0.0228 (10) | 0.0160 (9) | 0.0207 (10) | 0.0003 (9) | 0.0101 (8) | −0.0005 (8) |
C2A | 0.0234 (10) | 0.0190 (10) | 0.0175 (10) | −0.0014 (8) | 0.0089 (8) | 0.0003 (7) |
C3A | 0.0180 (9) | 0.0233 (11) | 0.0254 (11) | 0.0002 (8) | 0.0077 (8) | 0.0007 (8) |
C4A | 0.0237 (10) | 0.0177 (10) | 0.0277 (11) | −0.0013 (8) | 0.0136 (9) | 0.0001 (8) |
C5A | 0.0189 (9) | 0.0188 (10) | 0.0143 (9) | −0.0007 (8) | 0.0039 (8) | 0.0010 (7) |
C6A | 0.0224 (9) | 0.0215 (10) | 0.0203 (10) | 0.0011 (8) | 0.0125 (8) | 0.0022 (8) |
C7A | 0.0201 (9) | 0.0169 (10) | 0.0191 (10) | −0.0014 (8) | 0.0097 (8) | 0.0017 (8) |
C8A | 0.0271 (10) | 0.0178 (10) | 0.0241 (11) | 0.0023 (9) | 0.0138 (9) | 0.0013 (8) |
C9A | 0.0367 (11) | 0.0201 (10) | 0.0185 (10) | −0.0024 (10) | 0.0112 (9) | −0.0022 (8) |
C10A | 0.0285 (11) | 0.0251 (12) | 0.0229 (11) | −0.0051 (9) | 0.0055 (9) | 0.0037 (9) |
C11A | 0.0228 (10) | 0.0285 (12) | 0.0285 (12) | 0.0026 (9) | 0.0105 (9) | 0.0058 (10) |
C12A | 0.0252 (10) | 0.0228 (11) | 0.0231 (11) | 0.0035 (9) | 0.0130 (9) | 0.0020 (9) |
O3B | 0.0316 (8) | 0.0315 (9) | 0.0322 (8) | −0.0070 (7) | 0.0194 (7) | −0.0013 (7) |
O2B | 0.0335 (8) | 0.0198 (8) | 0.0151 (7) | −0.0015 (7) | 0.0053 (6) | 0.0004 (6) |
O1B | 0.0249 (8) | 0.0284 (8) | 0.0287 (8) | −0.0088 (7) | 0.0106 (7) | −0.0040 (7) |
O4B | 0.0313 (8) | 0.0175 (8) | 0.0228 (8) | 0.0008 (6) | 0.0103 (7) | 0.0000 (6) |
O5B | 0.0254 (7) | 0.0183 (7) | 0.0192 (7) | 0.0015 (6) | 0.0121 (6) | 0.0022 (6) |
N1B | 0.0223 (8) | 0.0181 (9) | 0.0153 (8) | −0.0005 (7) | 0.0066 (7) | −0.0003 (7) |
N2B | 0.0262 (9) | 0.0156 (9) | 0.0195 (9) | 0.0019 (7) | 0.0112 (7) | −0.0003 (7) |
C4B | 0.0216 (10) | 0.0173 (10) | 0.0237 (10) | 0.0008 (8) | 0.0092 (9) | −0.0023 (8) |
C3B | 0.0192 (9) | 0.0232 (11) | 0.0232 (10) | −0.0006 (8) | 0.0068 (8) | −0.0029 (8) |
C2B | 0.0234 (10) | 0.0219 (11) | 0.0165 (10) | 0.0021 (8) | 0.0101 (8) | −0.0009 (8) |
C1B | 0.0218 (10) | 0.0145 (9) | 0.0197 (10) | 0.0007 (8) | 0.0090 (8) | −0.0010 (8) |
C5B | 0.0192 (9) | 0.0189 (10) | 0.0135 (9) | 0.0001 (8) | 0.0030 (7) | −0.0014 (8) |
C6B | 0.0234 (10) | 0.0209 (10) | 0.0208 (10) | −0.0014 (9) | 0.0108 (8) | 0.0026 (8) |
C7B | 0.0227 (10) | 0.0149 (10) | 0.0208 (10) | −0.0011 (8) | 0.0097 (8) | 0.0025 (8) |
C8B | 0.0241 (10) | 0.0189 (10) | 0.0254 (11) | 0.0028 (8) | 0.0131 (9) | 0.0034 (8) |
C9B | 0.0332 (11) | 0.0202 (11) | 0.0205 (11) | −0.0012 (9) | 0.0117 (9) | 0.0011 (8) |
C10B | 0.0247 (10) | 0.0229 (11) | 0.0218 (10) | −0.0054 (9) | 0.0056 (8) | 0.0037 (9) |
C11B | 0.0225 (10) | 0.0279 (11) | 0.0283 (11) | 0.0035 (10) | 0.0120 (9) | 0.0081 (9) |
C12B | 0.0270 (10) | 0.0249 (11) | 0.0220 (10) | 0.0036 (9) | 0.0140 (9) | 0.0038 (9) |
Geometric parameters (Å, º) top
O1A—C1A | 1.210 (2) | O3B—C4B | 1.209 (2) |
O2A—N1A | 1.382 (2) | O2B—N1B | 1.378 (2) |
O2A—H1A | 0.87 (3) | O2B—H1B | 0.80 (3) |
O3A—C4A | 1.204 (2) | O1B—C1B | 1.213 (2) |
O4A—C5A | 1.226 (3) | O4B—C5B | 1.229 (3) |
O5A—C5A | 1.346 (2) | O5B—C5B | 1.347 (2) |
O5A—C6A | 1.445 (2) | O5B—C6B | 1.467 (2) |
N1A—C1A | 1.372 (3) | N1B—C1B | 1.371 (3) |
N1A—C4A | 1.386 (3) | N1B—C4B | 1.385 (3) |
N2A—C5A | 1.343 (3) | N2B—C5B | 1.346 (3) |
N2A—C2A | 1.450 (3) | N2B—C2B | 1.455 (3) |
N2A—H2NA | 0.84 (3) | N2B—H2NB | 0.84 (3) |
C1A—C2A | 1.521 (3) | C4B—C3B | 1.506 (3) |
C2A—C3A | 1.542 (3) | C3B—C2B | 1.541 (3) |
C2A—H2A | 1.0000 | C3B—H31B | 0.9900 |
C3A—C4A | 1.508 (3) | C3B—H32B | 0.9900 |
C3A—H31A | 0.9900 | C2B—C1B | 1.521 (3) |
C3A—H32A | 0.9900 | C2B—H2B | 1.0000 |
C6A—C7A | 1.506 (3) | C6B—C7B | 1.504 (3) |
C6A—H61A | 0.9900 | C6B—H61B | 0.9900 |
C6A—H62A | 0.9900 | C6B—H62B | 0.9900 |
C7A—C12A | 1.388 (3) | C7B—C8B | 1.399 (3) |
C7A—C8A | 1.401 (3) | C7B—C12B | 1.402 (3) |
C8A—C9A | 1.390 (3) | C8B—C9B | 1.387 (3) |
C8A—H8A | 0.9500 | C8B—H8B | 0.9500 |
C9A—C10A | 1.390 (3) | C9B—C10B | 1.384 (3) |
C9A—H9A | 0.9500 | C9B—H9B | 0.9500 |
C10A—C11A | 1.384 (3) | C10B—C11B | 1.392 (3) |
C10A—H10A | 0.9500 | C10B—H10B | 0.9500 |
C11A—C12A | 1.388 (3) | C11B—C12B | 1.387 (3) |
C11A—H11A | 0.9500 | C11B—H11B | 0.9500 |
C12A—H12A | 0.9500 | C12B—H12B | 0.9500 |
| | | |
N1A—O2A—H1A | 102.6 (17) | N1B—O2B—H1B | 107.9 (19) |
C5A—O5A—C6A | 116.66 (16) | C5B—O5B—C6B | 116.67 (16) |
C1A—N1A—O2A | 121.23 (16) | C1B—N1B—O2B | 120.84 (16) |
C1A—N1A—C4A | 115.74 (17) | C1B—N1B—C4B | 115.69 (17) |
O2A—N1A—C4A | 122.95 (16) | O2B—N1B—C4B | 123.42 (16) |
C5A—N2A—C2A | 121.06 (18) | C5B—N2B—C2B | 119.85 (18) |
C5A—N2A—H2NA | 115.1 (17) | C5B—N2B—H2NB | 116.7 (16) |
C2A—N2A—H2NA | 122.5 (17) | C2B—N2B—H2NB | 121.9 (16) |
O1A—C1A—N1A | 124.86 (19) | O3B—C4B—N1B | 123.95 (19) |
O1A—C1A—C2A | 128.27 (19) | O3B—C4B—C3B | 129.37 (19) |
N1A—C1A—C2A | 106.86 (16) | N1B—C4B—C3B | 106.66 (17) |
N2A—C2A—C1A | 112.50 (16) | C4B—C3B—C2B | 105.59 (16) |
N2A—C2A—C3A | 114.23 (17) | C4B—C3B—H31B | 110.6 |
C1A—C2A—C3A | 104.48 (16) | C2B—C3B—H31B | 110.6 |
N2A—C2A—H2A | 108.5 | C4B—C3B—H32B | 110.6 |
C1A—C2A—H2A | 108.5 | C2B—C3B—H32B | 110.6 |
C3A—C2A—H2A | 108.5 | H31B—C3B—H32B | 108.8 |
C4A—C3A—C2A | 105.74 (16) | N2B—C2B—C1B | 111.41 (16) |
C4A—C3A—H31A | 110.6 | N2B—C2B—C3B | 115.06 (17) |
C2A—C3A—H31A | 110.6 | C1B—C2B—C3B | 104.44 (16) |
C4A—C3A—H32A | 110.6 | N2B—C2B—H2B | 108.6 |
C2A—C3A—H32A | 110.6 | C1B—C2B—H2B | 108.6 |
H31A—C3A—H32A | 108.7 | C3B—C2B—H2B | 108.6 |
O3A—C4A—N1A | 124.09 (19) | O1B—C1B—N1B | 125.28 (19) |
O3A—C4A—C3A | 129.41 (19) | O1B—C1B—C2B | 127.77 (19) |
N1A—C4A—C3A | 106.49 (17) | N1B—C1B—C2B | 106.94 (16) |
O4A—C5A—N2A | 125.86 (19) | O4B—C5B—N2B | 124.96 (19) |
O4A—C5A—O5A | 123.79 (19) | O4B—C5B—O5B | 123.67 (19) |
N2A—C5A—O5A | 110.35 (18) | N2B—C5B—O5B | 111.33 (18) |
O5A—C6A—C7A | 111.40 (16) | O5B—C6B—C7B | 110.78 (15) |
O5A—C6A—H61A | 109.3 | O5B—C6B—H61B | 109.5 |
C7A—C6A—H61A | 109.3 | C7B—C6B—H61B | 109.5 |
O5A—C6A—H62A | 109.3 | O5B—C6B—H62B | 109.5 |
C7A—C6A—H62A | 109.3 | C7B—C6B—H62B | 109.5 |
H61A—C6A—H62A | 108.0 | H61B—C6B—H62B | 108.1 |
C12A—C7A—C8A | 118.85 (19) | C8B—C7B—C12B | 118.59 (18) |
C12A—C7A—C6A | 122.31 (18) | C8B—C7B—C6B | 120.21 (17) |
C8A—C7A—C6A | 118.79 (18) | C12B—C7B—C6B | 121.19 (18) |
C9A—C8A—C7A | 120.62 (19) | C9B—C8B—C7B | 121.10 (19) |
C9A—C8A—H8A | 119.7 | C9B—C8B—H8B | 119.4 |
C7A—C8A—H8A | 119.7 | C7B—C8B—H8B | 119.4 |
C10A—C9A—C8A | 119.8 (2) | C10B—C9B—C8B | 119.7 (2) |
C10A—C9A—H9A | 120.1 | C10B—C9B—H9B | 120.2 |
C8A—C9A—H9A | 120.1 | C8B—C9B—H9B | 120.2 |
C11A—C10A—C9A | 119.8 (2) | C9B—C10B—C11B | 120.1 (2) |
C11A—C10A—H10A | 120.1 | C9B—C10B—H10B | 120.0 |
C9A—C10A—H10A | 120.1 | C11B—C10B—H10B | 120.0 |
C10A—C11A—C12A | 120.5 (2) | C12B—C11B—C10B | 120.4 (2) |
C10A—C11A—H11A | 119.7 | C12B—C11B—H11B | 119.8 |
C12A—C11A—H11A | 119.7 | C10B—C11B—H11B | 119.8 |
C7A—C12A—C11A | 120.4 (2) | C11B—C12B—C7B | 120.2 (2) |
C7A—C12A—H12A | 119.8 | C11B—C12B—H12B | 119.9 |
C11A—C12A—H12A | 119.8 | C7B—C12B—H12B | 119.9 |
| | | |
O2A—N1A—C1A—O1A | 4.3 (3) | C1B—N1B—C4B—O3B | 178.1 (2) |
C4A—N1A—C1A—O1A | −172.5 (2) | O2B—N1B—C4B—O3B | 0.6 (3) |
O2A—N1A—C1A—C2A | −174.98 (16) | C1B—N1B—C4B—C3B | −0.6 (2) |
C4A—N1A—C1A—C2A | 8.2 (2) | O2B—N1B—C4B—C3B | −178.04 (17) |
C5A—N2A—C2A—C1A | −89.0 (2) | O3B—C4B—C3B—C2B | 176.7 (2) |
C5A—N2A—C2A—C3A | 152.09 (18) | N1B—C4B—C3B—C2B | −4.7 (2) |
O1A—C1A—C2A—N2A | 48.1 (3) | C5B—N2B—C2B—C1B | −92.2 (2) |
N1A—C1A—C2A—N2A | −132.62 (18) | C5B—N2B—C2B—C3B | 149.15 (18) |
O1A—C1A—C2A—C3A | 172.6 (2) | C4B—C3B—C2B—N2B | 130.09 (18) |
N1A—C1A—C2A—C3A | −8.2 (2) | C4B—C3B—C2B—C1B | 7.6 (2) |
N2A—C2A—C3A—C4A | 128.98 (18) | O2B—N1B—C1B—O1B | 2.0 (3) |
C1A—C2A—C3A—C4A | 5.6 (2) | C4B—N1B—C1B—O1B | −175.6 (2) |
C1A—N1A—C4A—O3A | 174.9 (2) | O2B—N1B—C1B—C2B | −176.80 (16) |
O2A—N1A—C4A—O3A | −1.9 (3) | C4B—N1B—C1B—C2B | 5.7 (2) |
C1A—N1A—C4A—C3A | −4.4 (2) | N2B—C2B—C1B—O1B | 48.4 (3) |
O2A—N1A—C4A—C3A | 178.82 (17) | C3B—C2B—C1B—O1B | 173.2 (2) |
C2A—C3A—C4A—O3A | 179.5 (2) | N2B—C2B—C1B—N1B | −132.85 (18) |
C2A—C3A—C4A—N1A | −1.3 (2) | C3B—C2B—C1B—N1B | −8.0 (2) |
C2A—N2A—C5A—O4A | −5.1 (3) | C2B—N2B—C5B—O4B | −3.3 (3) |
C2A—N2A—C5A—O5A | 175.89 (17) | C2B—N2B—C5B—O5B | 179.04 (16) |
C6A—O5A—C5A—O4A | −10.9 (3) | C6B—O5B—C5B—O4B | −6.3 (3) |
C6A—O5A—C5A—N2A | 168.10 (16) | C6B—O5B—C5B—N2B | 171.47 (16) |
C5A—O5A—C6A—C7A | −83.3 (2) | C5B—O5B—C6B—C7B | −93.0 (2) |
O5A—C6A—C7A—C12A | −16.1 (3) | O5B—C6B—C7B—C8B | −117.6 (2) |
O5A—C6A—C7A—C8A | 166.63 (17) | O5B—C6B—C7B—C12B | 62.9 (3) |
C12A—C7A—C8A—C9A | 0.7 (3) | C12B—C7B—C8B—C9B | −0.9 (3) |
C6A—C7A—C8A—C9A | 178.00 (18) | C6B—C7B—C8B—C9B | 179.54 (19) |
C7A—C8A—C9A—C10A | −0.6 (3) | C7B—C8B—C9B—C10B | −0.1 (3) |
C8A—C9A—C10A—C11A | 0.1 (3) | C8B—C9B—C10B—C11B | 1.3 (3) |
C9A—C10A—C11A—C12A | 0.3 (3) | C9B—C10B—C11B—C12B | −1.4 (3) |
C8A—C7A—C12A—C11A | −0.3 (3) | C10B—C11B—C12B—C7B | 0.4 (3) |
C6A—C7A—C12A—C11A | −177.5 (2) | C8B—C7B—C12B—C11B | 0.8 (3) |
C10A—C11A—C12A—C7A | −0.2 (3) | C6B—C7B—C12B—C11B | −179.72 (19) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2A—H1A···O4Bi | 0.87 (3) | 1.80 (3) | 2.667 (2) | 173 (3) |
N2A—H2NA···O2Bi | 0.84 (3) | 2.39 (3) | 3.184 (3) | 158 (2) |
N2A—H2NA···O1Bi | 0.84 (3) | 2.47 (2) | 3.000 (3) | 122 (2) |
O2B—H1B···O4A | 0.80 (3) | 1.90 (3) | 2.689 (2) | 172 (3) |
N2B—H2NB···O2A | 0.84 (3) | 2.43 (3) | 3.237 (3) | 162 (2) |
C2A—H2A···O3Aii | 1.00 | 2.39 | 3.004 (3) | 119 |
C2B—H2B···O3Biii | 1.00 | 2.43 | 3.035 (3) | 118 |
Symmetry codes: (i) x, y−1, z; (ii) −x+2, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+1. |
Experimental details
Crystal data |
Chemical formula | C12H12N2O5 |
Mr | 264.24 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 12.910 (3), 7.077 (4), 14.001 (3) |
β (°) | 111.67 (3) |
V (Å3) | 1188.8 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.28 × 0.25 × 0.20 |
|
Data collection |
Diffractometer | Oxford KM4 CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17662, 3640, 3070 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.703 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.083, 1.00 |
No. of reflections | 3640 |
No. of parameters | 355 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.22 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2A—H1A···O4Bi | 0.87 (3) | 1.80 (3) | 2.667 (2) | 173 (3) |
N2A—H2NA···O2Bi | 0.84 (3) | 2.39 (3) | 3.184 (3) | 158 (2) |
N2A—H2NA···O1Bi | 0.84 (3) | 2.47 (2) | 3.000 (3) | 122 (2) |
O2B—H1B···O4A | 0.80 (3) | 1.90 (3) | 2.689 (2) | 172 (3) |
N2B—H2NB···O2A | 0.84 (3) | 2.43 (3) | 3.237 (3) | 162 (2) |
C2A—H2A···O3Aii | 1.00 | 2.39 | 3.004 (3) | 119.1 |
C2B—H2B···O3Biii | 1.00 | 2.43 | 3.035 (3) | 118.3 |
Symmetry codes: (i) x, y−1, z; (ii) −x+2, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+1. |
The title compound, (I), is a cyclic derivative of L-aspartic acid and belongs to the group of chiral N-hydroxysuccinimides. With the aim of synthesizing a new class of L-aspartic acid-based sulfonic esters of N-hydroxysuccinimides, we obtained (I) by reacting hydroxylamine with Cbz-L-aspartic acid anhydride (Cbz is carbobenzoxy) in a water–dioxane system. As part of our studies of N-oxysuccinimide ring geometry (Stefanowicz et al. 2005, 2006), we report here the molecular and supramolecular structure of (I), which offers a wide range of intermolecular interactions, such as classical N—H···O and O—H···O hydrogen bonds, short carbonyl–carbonyl O···C interactions, and C—H···O and C—H···π(arene) contacts.
Compound (I) crystallizes in the space group P21 with two independent molecules in the asymmetric unit, A and B (Fig. 1). Superposition of these two molecules is shown in Fig. 2. They differ mainly in the orientation of the benzyl moiety, with the O5—C6—C7—C8 torsion angles being 166.6 (2) and -117.6 (2)° for molecules A and B, respectively. Atoms N1 of molecules A and B are characterized by planar geometry, with deviations from the plane defined by atoms C1/C4/O2 of 0.023 (2) and 0.019 (2) Å, respectively. Comparison of these values with the data available for analogous compounds such as N-hydroxysuccinimide [0.061 (2) Å; Jones, 2003] and N-hydroxyphtalimide [0.108 (6) Å; Miao et al., 1995] indicates increased sp2 character of the succinimide N atom for (I). The succinimide ring geometry of (I) is also slightly puckered compared with the virtually planar geometries of the N-hydroxyphtalimide and N-hydroxysuccinimide five-membered rings, which both have r.m.s. deviations of less than 0.02 Å. This difference can be explained by the substitution of atoms C2A/B by an aminobenzocarboxy moiety in (I), while in the other two compounds, both aromatic or methylene C atoms are geometrically equal. The puckering parameters (Cremer & Pople, 1975) for (I) are q2 = 0.079 (2) Å and ψ2 = 227 (1)° for molecule A, and q2 = 0.081 (2) Å and ψ2 = 251 (1)° for molecule B, indicating a twisted conformation on C1A—C2A and an approximate envelope conformation at C2B for the five-membered rings of molecules A and B, respectively.
The hydrogen-bond network is built up from the combination of three N—H···O and two O—H···O hydrogen bonds that link molecules A with neighbouring molecules B to form one-dimensional substructural ribbon motifs, augmented by short C═O···C═O carbonyl–carbonyl interactions between adjacent succinimide rings (Fig. 3). The strength of the C═ O···C═O interactions can be compared with medium-strength hydrogen bonds (Allen et al., 1998). Adjacent ribbons are linked via chains of C—H···O contacts between molecules of the same type to form two-dimensional sheets (Fig. 4). Only short C—H···π(arene) interactions link neighbouring sheets, generating a three-dimensional complex network (Fig. 5).
Atoms N2B and O2B from molecule B act as hydrogen-bond donors to atoms O2A and O4A from molecule A, respectively. The combination of these two hydrogen bonds gives an R22(14) ring (Bernstein et al., 1995). Atom O2A also acts as a hydrogen-bond donor to atom O4B of a neighbouring molecule at (x, y - 1, z), and atom N2A is a hydrogen-bond donor to atoms O1B and O2B, both at (x, y - 1, z), so R22(13), R22(14) and R21(5) ring motifs are generated (Fig. 3). Propagation of these motifs by simple translation along the b axis gives a one-dimensional substructural ribbon motif, which is additionally supported by C═O···C═O interactions between adjacent A and B molecules, e.g. O1A···C1B [2.848 (2) Å] and O1A···C4B [3.074 (2) Å], and O1Bi···C1A [3.028 (2) Å] and O1Bi···C4A [2.938 (2) Å] (Fig. 3). These contacts do not occur in the crystal structures of N-hydroxyphtalimide (Miao et al., 1995) and N-hydroxysuccinimide (Jones, 2003). Atoms C2A and C2B act as hydrogen-bond donors to atoms O3Aii and O3Biii, respectively, both linking molecules of the same type from adjacent ribbons (Fig. 4). Propagation of these short C—H···O contacts by a 21 screw axis (1/2, y, 1/2) and translation along the a axis generate a two-dimensional sheet of C—H···O chains linked into ribbons in the ab plane. Adjacent sheets are linked via C—H···π (arene) interactions (Fig. 5), with C6A···π(arene)iv and C6B···π(arene)v distances of 3.401 (2) and 3.428 (2) Å, respectively, providing a complex three-dimensional framework.
It is worth mentioning that the characteristic C(5) motif of the O—H···O hydrogen-bonding combination in simple N-hydroxyimides (Miao et al., 1995; Jones, 2003) is absent from the structure of (I). The hydrogen-bonding geometry is listed in Table 1.