A single-crystal neutron diffraction study of the organic non-linear optical material 3-(1,1-dicyanoethenyl)-1-phenyl-4,5-dihydro-1H-pyrazole (hereafter DCNP), space group Cc, is presented. The study was conducted in order to relate the structural characteristics of the compound to its physical properties. DCNP exhibits a very large second harmonic generation (SHG) output, an extremely large linear electro-optical effect and photoconductive and pyroelectric properties. The nature of the hydrogen-bonding revealed by the study, in part, accounts for the first two of these phenomena. The neutron study also shows that some rather atypical atomic thermal motion is present in part of the molecule. With the aid of a variable-temperature single-crystal X-ray diffraction study, in conjunction with the neutron study, this thermal motion is attributed to libration and is fully characterized. As a result, suitable corrections to the bond geometry and the anisotropic displacement parameters of DCNP are made. The libration is also shown to enhance the SHG effect. The cell parameters from the variable-temperature X-ray study are also used in order to evaluate the thermal expansivity coefficients of DCNP.
Supporting information
CCDC references: 156677; 156678; 156679; 156680; 156681
The flack parameters do not resemble and true meaning since Mo Ka irradiation is not capable of discerning the correct absolute structure for C, H, N only containing compounds.
C1—C3 and C2—C3 are longer than usual due to the extremely electron withdrawing nature of the nitrile group.
Data collection: SMART (Siemens Analytical X-ray Instruments, 1995) for 90dcnp, 200dcnp, 290dcnp; SMART (siemens Analytical X-ray Instruments, 1995) for 100dcnp; Local ISIS program for 100Ndcnp. Cell refinement: SMART (Siemens Analytical X-ray Instruments, 1995) for 90dcnp, 100dcnp, 200dcnp, 290dcnp; Local ISIS program for 100Ndcnp. Data reduction: SAINT (Siemens Analytical X-ray Instruments, 1995) for 90dcnp, 100dcnp, 200dcnp, 290dcnp; Local ISIS program for 100Ndcnp. Program(s) used to solve structure: SHELXS86 (Sheldrick, 1990) for 90dcnp, 100dcnp, 200dcnp, 290dcnp; none for 100Ndcnp. For all compounds, program(s) used to refine structure: SHELXL93 (Sheldrick, 1993); molecular graphics: SHELXTL-Plus (Sheldrick, 1995); software used to prepare material for publication: SHELXL93 (Sheldrick, 1993).
Crystal data top
C13H10N4 | Z = 4 |
Mr = 222.25 | F(000) = 464 |
Monoclinic, Cc | Dx = 1.312 Mg m−3 |
a = 11.5945 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.2912 (4) Å | µ = 0.08 mm−1 |
c = 7.8944 (2) Å | T = 90 K |
β = 90.018 (1)° | Irregular, red |
V = 1125.03 (5) Å3 | 0.5 × 0.3 × 0.15 mm |
Data collection top
Siemens SMART-CCD diffractometer | 1893 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.030 |
Graphite monochromator | θmax = 27.5°, θmin = 2.4° |
ω scans | h = −14→15 |
3921 measured reflections | k = −12→15 |
2029 independent reflections | l = −10→10 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | Xyz and Uiso refined |
R[F2 > 2σ(F2)] = 0.035 | Calculated w = 1/[σ2(Fo2) + (0.0274P)2 + 0.5936P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.079 | (Δ/σ)max < 0.001 |
S = 1.16 | Δρmax = 0.15 e Å−3 |
2028 reflections | Δρmin = −0.16 e Å−3 |
195 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
2 restraints | Extinction coefficient: 0.0045 (7) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −2.39 (236) |
Crystal data top
C13H10N4 | V = 1125.03 (5) Å3 |
Mr = 222.25 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 11.5945 (3) Å | µ = 0.08 mm−1 |
b = 12.2912 (4) Å | T = 90 K |
c = 7.8944 (2) Å | 0.5 × 0.3 × 0.15 mm |
β = 90.018 (1)° | |
Data collection top
Siemens SMART-CCD diffractometer | 1893 reflections with I > 2σ(I) |
3921 measured reflections | Rint = 0.030 |
2029 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.035 | Xyz and Uiso refined |
wR(F2) = 0.079 | Δρmax = 0.15 e Å−3 |
S = 1.16 | Δρmin = −0.16 e Å−3 |
2028 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
195 parameters | Absolute structure parameter: −2.39 (236) |
2 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except for 1 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating Rfactorobs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.5704 (2) | 0.06007 (13) | 1.3341 (2) | 0.0312 (4) | |
N2 | 0.5034 (2) | 0.39998 (13) | 1.2328 (2) | 0.0312 (4) | |
N3 | 0.3481 (2) | 0.18991 (13) | 0.7110 (2) | 0.0248 (4) | |
N4 | 0.31107 (15) | 0.26484 (14) | 0.6017 (2) | 0.0252 (4) | |
C1 | 0.5311 (2) | 0.1224 (2) | 1.2408 (3) | 0.0249 (4) | |
C2 | 0.4949 (2) | 0.31304 (15) | 1.1826 (3) | 0.0223 (4) | |
C3 | 0.4853 (2) | 0.2017 (2) | 1.1248 (3) | 0.0213 (4) | |
C4 | 0.4370 (2) | 0.1699 (2) | 0.9753 (3) | 0.0229 (4) | |
C5 | 0.3920 (2) | 0.23780 (15) | 0.8457 (2) | 0.0211 (4) | |
C6 | 0.3391 (2) | 0.3784 (2) | 0.6549 (3) | 0.0247 (4) | |
C7 | 0.3845 (2) | 0.3613 (2) | 0.8367 (3) | 0.0246 (4) | |
C8 | 0.2632 (2) | 0.2344 (2) | 0.4455 (2) | 0.0238 (4) | |
C9 | 0.2550 (2) | 0.1249 (2) | 0.4005 (3) | 0.0289 (5) | |
C10 | 0.2048 (2) | 0.0964 (2) | 0.2467 (3) | 0.0342 (5) | |
C11 | 0.1622 (2) | 0.1762 (2) | 0.1370 (3) | 0.0389 (6) | |
C12 | 0.1701 (2) | 0.2850 (2) | 0.1814 (3) | 0.0363 (6) | |
C13 | 0.2208 (2) | 0.3159 (2) | 0.3362 (3) | 0.0291 (5) | |
H4 | 0.4372 (18) | 0.0916 (16) | 0.952 (3) | 0.023 (6)* | |
H6A | 0.3947 (18) | 0.4085 (16) | 0.582 (3) | 0.023 (5)* | |
H6B | 0.268 (2) | 0.4237 (18) | 0.653 (3) | 0.031 (6)* | |
H7A | 0.458 (2) | 0.3947 (19) | 0.854 (3) | 0.034 (6)* | |
H7B | 0.330 (2) | 0.3863 (18) | 0.923 (3) | 0.031 (6)* | |
H9 | 0.283 (2) | 0.0716 (19) | 0.484 (4) | 0.035 (7)* | |
H10 | 0.197 (2) | 0.018 (2) | 0.215 (4) | 0.048 (8)* | |
H11 | 0.128 (3) | 0.157 (3) | 0.030 (4) | 0.049 (8)* | |
H12 | 0.144 (2) | 0.346 (2) | 0.110 (4) | 0.038 (8)* | |
H13 | 0.224 (2) | 0.397 (2) | 0.371 (3) | 0.033 (7)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0353 (9) | 0.0263 (8) | 0.0321 (10) | −0.0005 (7) | −0.0092 (8) | 0.0003 (8) |
N2 | 0.0349 (10) | 0.0266 (9) | 0.0319 (10) | −0.0022 (7) | −0.0076 (8) | −0.0034 (8) |
N3 | 0.0270 (9) | 0.0232 (8) | 0.0244 (9) | 0.0008 (6) | −0.0009 (7) | 0.0003 (6) |
N4 | 0.0325 (10) | 0.0218 (9) | 0.0214 (10) | 0.0000 (7) | −0.0031 (8) | −0.0010 (7) |
C1 | 0.0252 (10) | 0.0216 (9) | 0.0277 (11) | −0.0017 (7) | −0.0019 (9) | −0.0022 (8) |
C2 | 0.0206 (10) | 0.0224 (10) | 0.0239 (10) | 0.0000 (7) | −0.0003 (8) | 0.0012 (8) |
C3 | 0.0209 (10) | 0.0204 (10) | 0.0227 (10) | −0.0026 (7) | 0.0000 (8) | −0.0015 (8) |
C4 | 0.0239 (10) | 0.0182 (9) | 0.0267 (11) | −0.0004 (7) | −0.0002 (8) | −0.0011 (8) |
C5 | 0.0216 (10) | 0.0209 (9) | 0.0207 (10) | −0.0012 (7) | 0.0013 (8) | 0.0001 (8) |
C6 | 0.0301 (10) | 0.0190 (9) | 0.0250 (11) | 0.0006 (8) | 0.0008 (9) | 0.0032 (8) |
C7 | 0.0319 (11) | 0.0190 (9) | 0.0230 (10) | −0.0012 (8) | 0.0011 (8) | 0.0006 (8) |
C8 | 0.0189 (10) | 0.0321 (10) | 0.0205 (10) | −0.0006 (8) | −0.0003 (8) | 0.0007 (9) |
C9 | 0.0275 (12) | 0.0357 (12) | 0.0236 (10) | −0.0066 (9) | 0.0008 (9) | −0.0012 (9) |
C10 | 0.0288 (11) | 0.0496 (14) | 0.0242 (10) | −0.0151 (9) | 0.0012 (9) | −0.0076 (9) |
C11 | 0.0238 (12) | 0.069 (2) | 0.0238 (11) | −0.0120 (10) | −0.0023 (9) | −0.0056 (12) |
C12 | 0.0211 (12) | 0.061 (2) | 0.0266 (13) | 0.0056 (10) | −0.0020 (10) | 0.0081 (11) |
C13 | 0.0229 (10) | 0.0389 (12) | 0.0254 (10) | 0.0064 (9) | 0.0000 (8) | 0.0081 (10) |
Geometric parameters (Å, º) top
N1—C1 | 1.156 (3) | C6—H6B | 1.00 (2) |
N2—C2 | 1.144 (2) | C7—H7A | 0.95 (3) |
N3—C5 | 1.317 (3) | C7—H7B | 0.98 (3) |
N3—N4 | 1.333 (2) | C8—C9 | 1.395 (3) |
N4—C8 | 1.404 (2) | C8—C13 | 1.411 (3) |
N4—C6 | 1.493 (3) | C9—C10 | 1.391 (3) |
C1—C3 | 1.439 (3) | C9—H9 | 0.98 (3) |
C2—C3 | 1.446 (3) | C10—C11 | 1.399 (4) |
C3—C4 | 1.364 (3) | C10—H10 | 1.00 (3) |
C4—C5 | 1.420 (3) | C11—C12 | 1.385 (4) |
C4—H4 | 0.98 (2) | C11—H11 | 0.96 (3) |
C5—C7 | 1.522 (3) | C12—C13 | 1.408 (4) |
C6—C7 | 1.543 (3) | C12—H12 | 0.99 (3) |
C6—H6A | 0.94 (2) | C13—H13 | 1.03 (2) |
| | | |
C5—N3—N4 | 109.8 (2) | C6—C7—H7A | 112.3 (15) |
N3—N4—C8 | 120.8 (2) | C5—C7—H7B | 108.5 (13) |
N3—N4—C6 | 113.2 (2) | C6—C7—H7B | 112.7 (14) |
C8—N4—C6 | 125.6 (2) | H7A—C7—H7B | 110 (2) |
N1—C1—C3 | 178.3 (2) | C9—C8—N4 | 120.5 (2) |
N2—C2—C3 | 178.0 (2) | C9—C8—C13 | 120.4 (2) |
C4—C3—C1 | 120.5 (2) | N4—C8—C13 | 119.0 (2) |
C4—C3—C2 | 125.2 (2) | C10—C9—C8 | 119.5 (2) |
C1—C3—C2 | 114.4 (2) | C10—C9—H9 | 123.7 (15) |
C3—C4—C5 | 127.3 (2) | C8—C9—H9 | 116.7 (15) |
C3—C4—H4 | 116.3 (14) | C9—C10—C11 | 120.8 (2) |
C5—C4—H4 | 116.3 (14) | C9—C10—H10 | 119.9 (17) |
N3—C5—C4 | 117.4 (2) | C11—C10—H10 | 119.2 (17) |
N3—C5—C7 | 112.7 (2) | C12—C11—C10 | 119.8 (2) |
C4—C5—C7 | 129.9 (2) | C12—C11—H11 | 119.4 (19) |
N4—C6—C7 | 102.04 (15) | C10—C11—H11 | 120.9 (19) |
N4—C6—H6A | 110.3 (13) | C11—C12—C13 | 120.5 (2) |
C7—C6—H6A | 112.9 (13) | C11—C12—H12 | 124.4 (16) |
N4—C6—H6B | 109.7 (13) | C13—C12—H12 | 115.1 (17) |
C7—C6—H6B | 111.7 (14) | C12—C13—C8 | 119.0 (2) |
H6A—C6—H6B | 110.0 (18) | C12—C13—H13 | 120.4 (15) |
C5—C7—C6 | 101.5 (2) | C8—C13—H13 | 120.6 (15) |
C5—C7—H7A | 111.7 (14) | | |
Crystal data top
C13H10N4 | Z = 4 |
Mr = 222.25 | F(000) = 464 |
Monoclinic, Cc | Dx = 1.313 Mg m−3 |
a = 11.5972 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.2873 (2) Å | µ = 0.08 mm−1 |
c = 7.8877 (1) Å | T = 100 K |
β = 90.021 (1)° | Irregular, red |
V = 1123.98 (3) Å3 | 0.5 × 0.3 × 0.15 mm |
Data collection top
Siemens SMART-CCD diffractometer | 6421 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.029 |
Graphite monochromator | θmax = 53.7°, θmin = 2.4° |
ω scans | h = −26→25 |
16798 measured reflections | k = −27→23 |
10048 independent reflections | l = −17→16 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.076 | All H-atom parameters refined |
wR(F2) = 0.075 | Calculated w = 1/[σ2(Fo2)] where P = (Fo2 + 2Fc2)/3 |
S = 2.38 | (Δ/σ)max = 0.003 |
9977 reflections | Δρmax = 0.77 e Å−3 |
194 parameters | Δρmin = −0.44 e Å−3 |
2 restraints | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.66 (88) |
Crystal data top
C13H10N4 | V = 1123.98 (3) Å3 |
Mr = 222.25 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 11.5972 (2) Å | µ = 0.08 mm−1 |
b = 12.2873 (2) Å | T = 100 K |
c = 7.8877 (1) Å | 0.5 × 0.3 × 0.15 mm |
β = 90.021 (1)° | |
Data collection top
Siemens SMART-CCD diffractometer | 6421 reflections with I > 2σ(I) |
16798 measured reflections | Rint = 0.029 |
10048 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.076 | All H-atom parameters refined |
wR(F2) = 0.075 | Δρmax = 0.77 e Å−3 |
S = 2.38 | Δρmin = −0.44 e Å−3 |
9977 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
194 parameters | Absolute structure parameter: 0.66 (88) |
2 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except for 71 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating Rfactorobs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.57031 (6) | 0.06009 (5) | 1.33401 (9) | 0.0314 (2) | |
N2 | 0.50383 (6) | 0.40003 (5) | 1.23365 (9) | 0.0314 (2) | |
N3 | 0.34807 (6) | 0.18977 (5) | 0.71094 (9) | 0.02323 (14) | |
N4 | 0.31106 (6) | 0.26461 (5) | 0.60155 (8) | 0.02438 (14) | |
C1 | 0.53098 (7) | 0.12240 (6) | 1.24063 (10) | 0.0243 (2) | |
C2 | 0.49505 (7) | 0.31263 (6) | 1.18214 (10) | 0.02133 (15) | |
C3 | 0.48533 (6) | 0.20168 (6) | 1.12553 (10) | 0.02010 (15) | |
C4 | 0.43697 (7) | 0.16978 (6) | 0.97498 (10) | 0.02107 (15) | |
C5 | 0.39183 (6) | 0.23780 (6) | 0.84573 (9) | 0.01953 (14) | |
C6 | 0.33923 (7) | 0.37837 (6) | 0.65496 (10) | 0.0234 (2) | |
C7 | 0.38457 (7) | 0.36109 (6) | 0.83672 (10) | 0.02311 (15) | |
C8 | 0.26309 (6) | 0.23429 (6) | 0.44577 (9) | 0.0222 (2) | |
C9 | 0.25490 (7) | 0.12493 (7) | 0.40025 (10) | 0.0275 (2) | |
C10 | 0.20489 (7) | 0.09619 (8) | 0.24698 (11) | 0.0340 (2) | |
C11 | 0.16224 (7) | 0.17644 (9) | 0.13673 (12) | 0.0391 (2) | |
C12 | 0.17053 (7) | 0.28461 (9) | 0.18307 (12) | 0.0368 (2) | |
C13 | 0.22085 (7) | 0.31530 (7) | 0.33606 (11) | 0.0286 (2) | |
H4 | 0.4365 (7) | 0.0961 (6) | 0.9541 (11) | 0.022 (2)* | |
H6A | 0.3936 (7) | 0.4080 (6) | 0.5786 (11) | 0.023 (2)* | |
H6B | 0.2679 (8) | 0.4214 (7) | 0.6519 (12) | 0.032 (2)* | |
H7A | 0.4611 (8) | 0.3925 (7) | 0.8514 (12) | 0.028 (2)* | |
H7B | 0.3290 (8) | 0.3890 (7) | 0.9196 (13) | 0.035 (2)* | |
H9 | 0.2802 (8) | 0.0735 (7) | 0.4733 (12) | 0.026 (2)* | |
H10 | 0.2019 (8) | 0.0209 (8) | 0.2108 (13) | 0.037 (3)* | |
H11 | 0.1286 (10) | 0.1539 (9) | 0.0316 (16) | 0.048 (3)* | |
H12 | 0.1457 (9) | 0.3352 (9) | 0.1149 (15) | 0.045 (3)* | |
H13 | 0.2223 (9) | 0.3929 (7) | 0.3704 (13) | 0.031 (2)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0358 (4) | 0.0260 (3) | 0.0323 (4) | 0.0000 (3) | −0.0097 (3) | 0.0000 (3) |
N2 | 0.0361 (4) | 0.0271 (3) | 0.0310 (4) | −0.0028 (3) | −0.0057 (3) | −0.0043 (3) |
N3 | 0.0287 (3) | 0.0195 (3) | 0.0215 (3) | 0.0000 (2) | −0.0001 (3) | 0.0007 (2) |
N4 | 0.0326 (4) | 0.0198 (3) | 0.0207 (3) | 0.0004 (3) | −0.0015 (3) | −0.0005 (2) |
C1 | 0.0251 (4) | 0.0217 (3) | 0.0262 (4) | −0.0019 (3) | −0.0015 (3) | −0.0029 (3) |
C2 | 0.0208 (3) | 0.0211 (4) | 0.0221 (4) | −0.0010 (3) | −0.0008 (3) | 0.0010 (3) |
C3 | 0.0194 (3) | 0.0185 (3) | 0.0223 (4) | −0.0009 (3) | 0.0004 (3) | 0.0001 (3) |
C4 | 0.0237 (3) | 0.0154 (3) | 0.0241 (4) | −0.0006 (3) | 0.0012 (3) | −0.0005 (3) |
C5 | 0.0220 (3) | 0.0158 (3) | 0.0208 (4) | −0.0008 (3) | 0.0028 (3) | −0.0009 (3) |
C6 | 0.0306 (4) | 0.0157 (3) | 0.0239 (4) | 0.0010 (3) | 0.0023 (3) | 0.0025 (3) |
C7 | 0.0321 (4) | 0.0157 (3) | 0.0216 (4) | 0.0003 (3) | 0.0021 (3) | 0.0005 (3) |
C8 | 0.0193 (4) | 0.0293 (4) | 0.0180 (4) | 0.0002 (3) | 0.0009 (3) | 0.0004 (3) |
C9 | 0.0268 (4) | 0.0330 (4) | 0.0228 (4) | −0.0057 (3) | 0.0034 (3) | −0.0019 (3) |
C10 | 0.0284 (4) | 0.0493 (5) | 0.0244 (4) | −0.0155 (4) | 0.0028 (3) | −0.0102 (4) |
C11 | 0.0225 (4) | 0.0731 (7) | 0.0217 (4) | −0.0117 (4) | −0.0009 (3) | −0.0061 (5) |
C12 | 0.0228 (4) | 0.0608 (6) | 0.0268 (5) | 0.0046 (4) | 0.0004 (4) | 0.0089 (4) |
C13 | 0.0237 (4) | 0.0384 (4) | 0.0238 (4) | 0.0055 (3) | 0.0014 (3) | 0.0077 (4) |
Geometric parameters (Å, º) top
N1—C1 | 1.1561 (10) | C6—H6B | 0.982 (9) |
N2—C2 | 1.1527 (10) | C7—H7A | 0.975 (9) |
N3—C5 | 1.3175 (10) | C7—H7B | 0.980 (9) |
N3—N4 | 1.3319 (9) | C8—C9 | 1.3941 (11) |
N4—C8 | 1.3992 (9) | C8—C13 | 1.4069 (11) |
N4—C6 | 1.4960 (10) | C9—C10 | 1.3864 (12) |
C1—C3 | 1.4328 (11) | C9—H9 | 0.904 (9) |
C2—C3 | 1.4390 (10) | C10—C11 | 1.405 (2) |
C3—C4 | 1.3703 (12) | C10—H10 | 0.968 (10) |
C4—C5 | 1.4183 (10) | C11—C12 | 1.382 (2) |
C4—H4 | 0.920 (8) | C11—H11 | 0.957 (13) |
C5—C7 | 1.5190 (10) | C12—C13 | 1.3923 (14) |
C6—C7 | 1.5416 (12) | C12—H12 | 0.871 (12) |
C6—H6A | 0.945 (8) | C13—H13 | 0.991 (9) |
| | | |
C5—N3—N4 | 109.72 (6) | C6—C7—H7A | 111.5 (5) |
N3—N4—C8 | 120.86 (6) | C5—C7—H7B | 110.7 (5) |
N3—N4—C6 | 113.11 (6) | C6—C7—H7B | 110.3 (6) |
C8—N4—C6 | 125.65 (6) | H7A—C7—H7B | 112.4 (8) |
N1—C1—C3 | 178.24 (8) | C9—C8—N4 | 120.66 (7) |
N2—C2—C3 | 177.36 (9) | C9—C8—C13 | 119.99 (8) |
C4—C3—C1 | 120.38 (7) | N4—C8—C13 | 119.34 (7) |
C4—C3—C2 | 124.88 (8) | C10—C9—C8 | 119.90 (8) |
C1—C3—C2 | 114.74 (7) | C10—C9—H9 | 120.9 (6) |
C3—C4—C5 | 127.25 (7) | C8—C9—H9 | 119.2 (6) |
C3—C4—H4 | 116.0 (5) | C9—C10—C11 | 120.54 (9) |
C5—C4—H4 | 116.7 (5) | C9—C10—H10 | 121.0 (6) |
N3—C5—C4 | 117.26 (6) | C11—C10—H10 | 118.4 (6) |
N3—C5—C7 | 112.81 (7) | C12—C11—C10 | 119.14 (9) |
C4—C5—C7 | 129.92 (7) | C12—C11—H11 | 122.4 (7) |
N4—C6—C7 | 101.98 (5) | C10—C11—H11 | 118.5 (7) |
N4—C6—H6A | 109.1 (5) | C11—C12—C13 | 121.26 (10) |
C7—C6—H6A | 114.7 (5) | C11—C12—H12 | 120.0 (8) |
N4—C6—H6B | 108.2 (5) | C13—C12—H12 | 118.7 (8) |
C7—C6—H6B | 112.6 (6) | C12—C13—C8 | 119.15 (9) |
H6A—C6—H6B | 109.8 (7) | C12—C13—H13 | 120.3 (6) |
C5—C7—C6 | 101.52 (6) | C8—C13—H13 | 120.4 (6) |
C5—C7—H7A | 109.8 (5) | | |
Crystal data top
C13H10N4 | Z = 4 |
Mr = 222.25 | F(000) = 464 |
Monoclinic, Cc | Dx = 1.295 Mg m−3 |
a = 11.7304 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.3278 (2) Å | µ = 0.08 mm−1 |
c = 7.8844 (2) Å | T = 200 K |
β = 90.173 (2)° | Irregular, red |
V = 1140.16 (5) Å3 | 0.5 × 0.3 × 0.15 mm |
Data collection top
Siemens SMART-CCD diffractometer | 2394 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.038 |
Graphite monochromator | θmax = 27.5°, θmin = 2.4° |
ω scans | h = −15→15 |
4054 measured reflections | k = −11→16 |
2402 independent reflections | l = −9→10 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | Xyz and Uiso refined |
R[F2 > 2σ(F2)] = 0.046 | Calculated w = 1/[σ2(Fo2)] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.068 | (Δ/σ)max = 0.001 |
S = 1.67 | Δρmax = 0.22 e Å−3 |
2394 reflections | Δρmin = −0.15 e Å−3 |
195 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
2 restraints | Extinction coefficient: 0.0200 (22) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 2.33 (205) |
Crystal data top
C13H10N4 | V = 1140.16 (5) Å3 |
Mr = 222.25 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 11.7304 (4) Å | µ = 0.08 mm−1 |
b = 12.3278 (2) Å | T = 200 K |
c = 7.8844 (2) Å | 0.5 × 0.3 × 0.15 mm |
β = 90.173 (2)° | |
Data collection top
Siemens SMART-CCD diffractometer | 2394 reflections with I > 2σ(I) |
4054 measured reflections | Rint = 0.038 |
2402 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | Xyz and Uiso refined |
wR(F2) = 0.068 | Δρmax = 0.22 e Å−3 |
S = 1.67 | Δρmin = −0.15 e Å−3 |
2394 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
195 parameters | Absolute structure parameter: 2.33 (205) |
2 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except for 8 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating Rfactorobs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.5690 (2) | 0.06091 (15) | 1.3323 (2) | 0.0626 (5) | |
N2 | 0.5044 (2) | 0.39900 (15) | 1.2326 (2) | 0.0605 (5) | |
N3 | 0.3482 (2) | 0.19070 (13) | 0.7113 (2) | 0.0436 (5) | |
N4 | 0.31131 (14) | 0.26508 (13) | 0.6017 (2) | 0.0464 (5) | |
C1 | 0.5302 (2) | 0.1232 (2) | 1.2395 (3) | 0.0467 (5) | |
C2 | 0.4958 (2) | 0.3120 (2) | 1.1825 (3) | 0.0415 (5) | |
C3 | 0.4852 (2) | 0.2022 (2) | 1.1240 (3) | 0.0390 (5) | |
C4 | 0.4373 (2) | 0.1713 (2) | 0.9748 (3) | 0.0410 (5) | |
C5 | 0.3924 (2) | 0.23847 (14) | 0.8456 (2) | 0.0382 (5) | |
C6 | 0.3385 (2) | 0.3781 (2) | 0.6557 (3) | 0.0466 (6) | |
C7 | 0.3847 (2) | 0.3605 (2) | 0.8357 (3) | 0.0455 (5) | |
C8 | 0.2631 (2) | 0.2350 (2) | 0.4462 (2) | 0.0421 (5) | |
C9 | 0.2550 (2) | 0.1261 (2) | 0.4016 (3) | 0.0518 (6) | |
C10 | 0.2040 (2) | 0.0991 (3) | 0.2481 (3) | 0.0638 (7) | |
C11 | 0.1623 (2) | 0.1777 (3) | 0.1383 (4) | 0.0709 (8) | |
C12 | 0.1706 (2) | 0.2847 (3) | 0.1832 (3) | 0.0657 (8) | |
C13 | 0.2209 (2) | 0.3155 (2) | 0.3367 (3) | 0.0543 (6) | |
H4 | 0.4352 (16) | 0.0918 (14) | 0.950 (3) | 0.050 (6)* | |
H6A | 0.3964 (17) | 0.4057 (15) | 0.585 (3) | 0.060 (6)* | |
H6B | 0.2659 (17) | 0.4214 (15) | 0.650 (2) | 0.056 (6)* | |
H7A | 0.4619 (18) | 0.3950 (16) | 0.855 (3) | 0.056 (6)* | |
H7B | 0.3339 (17) | 0.3836 (14) | 0.924 (3) | 0.058 (6)* | |
H9 | 0.2856 (19) | 0.0702 (17) | 0.486 (3) | 0.070 (7)* | |
H10 | 0.2004 (19) | 0.0258 (19) | 0.219 (3) | 0.063 (7)* | |
H11 | 0.123 (2) | 0.158 (2) | 0.028 (4) | 0.079 (8)* | |
H12 | 0.143 (2) | 0.349 (2) | 0.108 (3) | 0.080 (9)* | |
H13 | 0.224 (2) | 0.3918 (18) | 0.366 (3) | 0.059 (7)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0752 (13) | 0.0499 (11) | 0.0626 (13) | 0.0016 (9) | −0.0200 (10) | 0.0029 (10) |
N2 | 0.0719 (13) | 0.0485 (11) | 0.0608 (13) | −0.0038 (9) | −0.0116 (9) | −0.0100 (9) |
N3 | 0.0550 (11) | 0.0343 (9) | 0.0414 (11) | −0.0004 (8) | −0.0005 (8) | 0.0010 (7) |
N4 | 0.0621 (12) | 0.0361 (10) | 0.0410 (12) | 0.0000 (8) | −0.0016 (9) | −0.0003 (8) |
C1 | 0.0477 (12) | 0.0399 (12) | 0.0524 (14) | −0.0011 (10) | −0.0051 (10) | −0.0059 (10) |
C2 | 0.0421 (12) | 0.0398 (14) | 0.0426 (13) | −0.0020 (9) | −0.0010 (9) | 0.0009 (9) |
C3 | 0.0409 (13) | 0.0367 (12) | 0.0395 (12) | −0.0011 (8) | 0.0026 (10) | −0.0003 (9) |
C4 | 0.0446 (12) | 0.0316 (12) | 0.0469 (13) | −0.0013 (9) | 0.0023 (9) | −0.0007 (9) |
C5 | 0.0435 (12) | 0.0321 (11) | 0.0389 (13) | −0.0001 (9) | 0.0042 (10) | −0.0022 (9) |
C6 | 0.0565 (14) | 0.0358 (12) | 0.0475 (14) | 0.0012 (10) | 0.0020 (11) | 0.0028 (10) |
C7 | 0.0571 (14) | 0.0337 (11) | 0.0456 (12) | −0.0039 (11) | 0.0043 (10) | −0.0005 (11) |
C8 | 0.0376 (12) | 0.0530 (13) | 0.0357 (12) | 0.0006 (9) | 0.0030 (10) | −0.0014 (10) |
C9 | 0.0519 (14) | 0.059 (2) | 0.0440 (13) | −0.0089 (12) | 0.0060 (10) | −0.0049 (11) |
C10 | 0.0593 (15) | 0.083 (2) | 0.0496 (14) | −0.0277 (13) | 0.0051 (11) | −0.0186 (14) |
C11 | 0.045 (2) | 0.126 (3) | 0.041 (2) | −0.0186 (14) | −0.0021 (11) | −0.005 (2) |
C12 | 0.045 (2) | 0.106 (2) | 0.046 (2) | 0.0024 (14) | −0.0034 (12) | 0.012 (2) |
C13 | 0.0492 (14) | 0.068 (2) | 0.0456 (13) | 0.0081 (12) | 0.0037 (10) | 0.0114 (13) |
Geometric parameters (Å, º) top
N1—C1 | 1.153 (3) | C6—H6B | 1.01 (2) |
N2—C2 | 1.147 (2) | C7—H7A | 1.01 (2) |
N3—C5 | 1.316 (3) | C7—H7B | 0.96 (2) |
N3—N4 | 1.332 (2) | C8—C9 | 1.391 (3) |
N4—C8 | 1.399 (2) | C8—C13 | 1.405 (3) |
N4—C6 | 1.490 (3) | C9—C10 | 1.388 (3) |
C1—C3 | 1.433 (3) | C9—H9 | 1.02 (2) |
C2—C3 | 1.435 (3) | C10—C11 | 1.387 (4) |
C3—C4 | 1.357 (3) | C10—H10 | 0.93 (2) |
C4—C5 | 1.413 (3) | C11—C12 | 1.369 (4) |
C4—H4 | 1.00 (2) | C11—H11 | 1.02 (3) |
C5—C7 | 1.509 (3) | C12—C13 | 1.397 (4) |
C6—C7 | 1.533 (3) | C12—H12 | 1.04 (3) |
C6—H6A | 0.95 (2) | C13—H13 | 0.97 (2) |
| | | |
C5—N3—N4 | 109.89 (15) | C6—C7—H7A | 113.2 (11) |
N3—N4—C8 | 121.08 (15) | C5—C7—H7B | 107.1 (11) |
N3—N4—C6 | 112.91 (15) | C6—C7—H7B | 114.2 (12) |
C8—N4—C6 | 125.7 (2) | H7A—C7—H7B | 108.9 (17) |
N1—C1—C3 | 178.3 (2) | C9—C8—N4 | 120.3 (2) |
N2—C2—C3 | 178.6 (2) | C9—C8—C13 | 120.2 (2) |
C4—C3—C1 | 120.7 (2) | N4—C8—C13 | 119.5 (2) |
C4—C3—C2 | 125.4 (2) | C10—C9—C8 | 118.7 (2) |
C1—C3—C2 | 113.9 (2) | C10—C9—H9 | 123.7 (14) |
C3—C4—C5 | 127.8 (2) | C8—C9—H9 | 117.6 (14) |
C3—C4—H4 | 116.9 (12) | C11—C10—C9 | 121.8 (3) |
C5—C4—H4 | 115.3 (12) | C11—C10—H10 | 120.3 (15) |
N3—C5—C4 | 117.5 (2) | C9—C10—H10 | 117.9 (15) |
N3—C5—C7 | 112.4 (2) | C12—C11—C10 | 119.1 (2) |
C4—C5—C7 | 130.1 (2) | C12—C11—H11 | 119.0 (16) |
N4—C6—C7 | 101.9 (2) | C10—C11—H11 | 121.8 (16) |
N4—C6—H6A | 108.7 (12) | C11—C12—C13 | 121.1 (3) |
C7—C6—H6A | 110.4 (12) | C11—C12—H12 | 124.4 (16) |
N4—C6—H6B | 107.7 (11) | C13—C12—H12 | 114.5 (16) |
C7—C6—H6B | 114.3 (11) | C12—C13—C8 | 119.1 (3) |
H6A—C6—H6B | 113.0 (16) | C12—C13—H13 | 119.2 (15) |
C5—C7—C6 | 102.1 (2) | C8—C13—H13 | 121.6 (16) |
C5—C7—H7A | 111.0 (11) | | |
Crystal data top
C13H10N4 | Z = 4 |
Mr = 222.25 | F(000) = 464 |
Monoclinic, Cc | Dx = 1.274 Mg m−3 |
a = 11.8751 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.3735 (5) Å | µ = 0.08 mm−1 |
c = 7.8876 (3) Å | T = 290 K |
β = 90.412 (2)° | Irregular, red |
V = 1158.95 (8) Å3 | 0.5 × 0.3 × 0.15 mm |
Data collection top
Siemens SMART-CCD diffractometer | 1557 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.035 |
Graphite monochromator | θmax = 27.5°, θmin = 2.4° |
ω scans | h = −14→15 |
4000 measured reflections | k = −13→16 |
2112 independent reflections | l = −10→10 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | Xyz and Uiso refined |
R[F2 > 2σ(F2)] = 0.051 | Calculated w = 1/[σ2(Fo2) + (0.013P)2 + 0.3922P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.089 | (Δ/σ)max < 0.001 |
S = 1.31 | Δρmax = 0.11 e Å−3 |
2098 reflections | Δρmin = −0.10 e Å−3 |
195 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
2 restraints | Extinction coefficient: 0.0116 (10) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −1.67 (369) |
Crystal data top
C13H10N4 | V = 1158.95 (8) Å3 |
Mr = 222.25 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 11.8751 (5) Å | µ = 0.08 mm−1 |
b = 12.3735 (5) Å | T = 290 K |
c = 7.8876 (3) Å | 0.5 × 0.3 × 0.15 mm |
β = 90.412 (2)° | |
Data collection top
Siemens SMART-CCD diffractometer | 1557 reflections with I > 2σ(I) |
4000 measured reflections | Rint = 0.035 |
2112 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.051 | Xyz and Uiso refined |
wR(F2) = 0.089 | Δρmax = 0.11 e Å−3 |
S = 1.31 | Δρmin = −0.10 e Å−3 |
2098 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
195 parameters | Absolute structure parameter: −1.67 (369) |
2 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except for 14 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating Rfactorobs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.5680 (3) | 0.0617 (2) | 1.3306 (4) | 0.0905 (11) | |
N2 | 0.5043 (3) | 0.3978 (3) | 1.2314 (5) | 0.0890 (11) | |
N3 | 0.3487 (3) | 0.1913 (2) | 0.7106 (4) | 0.0624 (8) | |
N4 | 0.3117 (3) | 0.2651 (2) | 0.6021 (3) | 0.0676 (9) | |
C1 | 0.5296 (3) | 0.1237 (3) | 1.2380 (5) | 0.0681 (10) | |
C2 | 0.4955 (3) | 0.3117 (3) | 1.1817 (5) | 0.0627 (10) | |
C3 | 0.4852 (3) | 0.2029 (3) | 1.1231 (4) | 0.0578 (9) | |
C4 | 0.4376 (3) | 0.1725 (3) | 0.9743 (5) | 0.0587 (10) | |
C5 | 0.3924 (3) | 0.2390 (2) | 0.8453 (4) | 0.0550 (8) | |
C6 | 0.3377 (4) | 0.3779 (3) | 0.6567 (5) | 0.0674 (10) | |
C7 | 0.3852 (4) | 0.3605 (3) | 0.8359 (5) | 0.0639 (9) | |
C8 | 0.2632 (3) | 0.2358 (3) | 0.4468 (4) | 0.0608 (10) | |
C9 | 0.2547 (3) | 0.1276 (3) | 0.4016 (5) | 0.0738 (11) | |
C10 | 0.2039 (4) | 0.1005 (5) | 0.2489 (6) | 0.092 (2) | |
C11 | 0.1624 (4) | 0.1796 (7) | 0.1407 (7) | 0.104 (2) | |
C12 | 0.1710 (4) | 0.2852 (5) | 0.1856 (6) | 0.0930 (15) | |
C13 | 0.2215 (3) | 0.3157 (4) | 0.3378 (6) | 0.0778 (11) | |
H4 | 0.435 (2) | 0.097 (2) | 0.950 (4) | 0.055 (9)* | |
H6A | 0.391 (3) | 0.405 (2) | 0.587 (5) | 0.072 (10)* | |
H6B | 0.260 (3) | 0.419 (3) | 0.651 (5) | 0.099 (12)* | |
H7A | 0.462 (3) | 0.391 (3) | 0.861 (5) | 0.097 (12)* | |
H7B | 0.331 (3) | 0.383 (2) | 0.915 (4) | 0.069 (9)* | |
H9 | 0.285 (3) | 0.073 (3) | 0.487 (5) | 0.082 (12)* | |
H10 | 0.197 (3) | 0.030 (3) | 0.224 (5) | 0.081 (12)* | |
H11 | 0.129 (4) | 0.162 (4) | 0.028 (7) | 0.107 (16)* | |
H12 | 0.139 (3) | 0.352 (4) | 0.114 (6) | 0.099 (15)* | |
H13 | 0.224 (3) | 0.393 (3) | 0.365 (6) | 0.087 (12)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.108 (2) | 0.072 (2) | 0.091 (3) | 0.004 (2) | −0.027 (2) | 0.004 (2) |
N2 | 0.105 (3) | 0.069 (2) | 0.092 (3) | −0.003 (2) | −0.016 (2) | −0.012 (2) |
N3 | 0.076 (2) | 0.0513 (14) | 0.059 (2) | 0.0011 (13) | −0.0042 (15) | 0.0013 (14) |
N4 | 0.090 (2) | 0.053 (2) | 0.061 (2) | −0.0020 (15) | −0.001 (2) | 0.0009 (15) |
C1 | 0.073 (2) | 0.061 (2) | 0.071 (3) | −0.001 (2) | −0.010 (2) | 0.000 (2) |
C2 | 0.064 (2) | 0.058 (2) | 0.066 (2) | −0.004 (2) | 0.000 (2) | −0.001 (2) |
C3 | 0.057 (2) | 0.051 (2) | 0.065 (2) | −0.0047 (14) | 0.003 (2) | −0.001 (2) |
C4 | 0.067 (2) | 0.043 (2) | 0.066 (2) | −0.0025 (15) | 0.002 (2) | −0.002 (2) |
C5 | 0.063 (2) | 0.046 (2) | 0.056 (2) | −0.003 (2) | 0.006 (2) | 0.000 (2) |
C6 | 0.084 (3) | 0.050 (2) | 0.069 (3) | −0.003 (2) | 0.005 (2) | 0.004 (2) |
C7 | 0.081 (3) | 0.046 (2) | 0.065 (2) | 0.000 (2) | 0.006 (2) | 0.001 (2) |
C8 | 0.058 (2) | 0.071 (2) | 0.054 (2) | 0.002 (2) | 0.004 (2) | 0.002 (2) |
C9 | 0.075 (3) | 0.082 (3) | 0.064 (2) | −0.013 (2) | 0.005 (2) | −0.004 (2) |
C10 | 0.087 (3) | 0.120 (4) | 0.069 (3) | −0.039 (3) | 0.006 (2) | −0.023 (3) |
C11 | 0.071 (3) | 0.179 (6) | 0.061 (3) | −0.027 (3) | −0.003 (2) | −0.007 (4) |
C12 | 0.069 (3) | 0.142 (4) | 0.067 (3) | 0.006 (3) | −0.008 (3) | 0.015 (3) |
C13 | 0.070 (3) | 0.093 (3) | 0.071 (3) | 0.008 (2) | 0.003 (2) | 0.013 (3) |
Geometric parameters (Å, º) top
N1—C1 | 1.151 (4) | C6—H6B | 1.06 (4) |
N2—C2 | 1.140 (4) | C7—H7A | 1.00 (4) |
N3—C5 | 1.319 (4) | C7—H7B | 0.94 (3) |
N3—N4 | 1.324 (4) | C8—C9 | 1.390 (5) |
N4—C8 | 1.397 (4) | C8—C13 | 1.398 (5) |
N4—C6 | 1.493 (4) | C9—C10 | 1.385 (6) |
C1—C3 | 1.433 (5) | C9—H9 | 1.02 (4) |
C2—C3 | 1.428 (5) | C10—C11 | 1.387 (8) |
C3—C4 | 1.352 (5) | C10—H10 | 0.90 (4) |
C4—C5 | 1.411 (5) | C11—C12 | 1.357 (8) |
C4—H4 | 0.95 (3) | C11—H11 | 1.00 (5) |
C5—C7 | 1.508 (5) | C12—C13 | 1.390 (7) |
C6—C7 | 1.534 (5) | C12—H12 | 1.07 (4) |
C6—H6A | 0.90 (3) | C13—H13 | 0.98 (4) |
| | | |
C5—N3—N4 | 109.8 (2) | C6—C7—H7A | 117 (2) |
N3—N4—C8 | 121.4 (2) | C5—C7—H7B | 107.7 (18) |
N3—N4—C6 | 113.1 (3) | C6—C7—H7B | 108.4 (19) |
C8—N4—C6 | 125.3 (3) | H7A—C7—H7B | 112 (3) |
N1—C1—C3 | 178.1 (4) | C9—C8—N4 | 120.2 (3) |
N2—C2—C3 | 178.7 (4) | C9—C8—C13 | 119.9 (4) |
C4—C3—C2 | 125.2 (3) | N4—C8—C13 | 119.9 (3) |
C4—C3—C1 | 120.6 (3) | C10—C9—C8 | 119.1 (4) |
C2—C3—C1 | 114.2 (3) | C10—C9—H9 | 124 (2) |
C3—C4—C5 | 128.2 (3) | C8—C9—H9 | 117 (2) |
C3—C4—H4 | 117.5 (19) | C9—C10—C11 | 121.0 (5) |
C5—C4—H4 | 114.3 (19) | C9—C10—H10 | 118 (3) |
N3—C5—C4 | 117.8 (2) | C11—C10—H10 | 121 (3) |
N3—C5—C7 | 112.6 (3) | C12—C11—C10 | 119.5 (5) |
C4—C5—C7 | 129.6 (3) | C12—C11—H11 | 119 (3) |
N4—C6—C7 | 102.0 (3) | C10—C11—H11 | 122 (3) |
N4—C6—H6A | 109 (2) | C11—C12—C13 | 121.2 (5) |
C7—C6—H6A | 111 (2) | C11—C12—H12 | 126 (3) |
N4—C6—H6B | 105 (2) | C13—C12—H12 | 113 (3) |
C7—C6—H6B | 115 (2) | C12—C13—C8 | 119.2 (5) |
H6A—C6—H6B | 114 (3) | C12—C13—H13 | 118 (3) |
C5—C7—C6 | 101.9 (3) | C8—C13—H13 | 123 (3) |
C5—C7—H7A | 109 (2) | | |
Crystal data top
C13H10N4 | Z = 4 |
Mr = 222.00 | F(000) = 388 |
Monoclinic, Cc | Dx = 1.321 Mg m−3 |
a = 11.571 (2) Å | Pulsed neutrons at ISIS, U K radiation, λ = Variable (Time of flight) Å |
b = 12.258 (3) Å | µ = Variable because time-of-flight (absorption changes with wavelength) mm−1 |
c = 7.868 (2) Å | T = 100 K |
β = 90.11 (3)° | Pointed needle, red |
V = 1116.0 (4) Å3 | 7 × 3 × 2 mm |
Data collection top
SXD at ISIS, UK diffractometer | 1863 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.060 |
Laue diffraction scans | θmax = 78.0°, θmin = 2.3° |
Absorption correction: semi-empirical (using intensity measurements) (Wilson, 1997) | h = 0→34 |
Tmin = ?, Tmax = ? | k = 0→38 |
7808 measured reflections | l = −27→23 |
1867 independent reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.073 | All parameters refined |
wR(F2) = 0.083 | Calculated w = 1/[σ2(Fo2)] where P = (Fo2 + 2Fc2)/3 |
S = 4.02 | (Δ/σ)max = 0.024 |
1863 reflections | Δρmax = 2.22 e Å−3 |
244 parameters | Δρmin = −1.46 e Å−3 |
2 restraints | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (999) |
Crystal data top
C13H10N4 | V = 1116.0 (4) Å3 |
Mr = 222.00 | Z = 4 |
Monoclinic, Cc | Pulsed neutrons at ISIS, U K radiation, λ = Variable (Time of flight) Å |
a = 11.571 (2) Å | µ = Variable because time-of-flight (absorption changes with wavelength) mm−1 |
b = 12.258 (3) Å | T = 100 K |
c = 7.868 (2) Å | 7 × 3 × 2 mm |
β = 90.11 (3)° | |
Data collection top
SXD at ISIS, UK diffractometer | 1867 independent reflections |
Absorption correction: semi-empirical (using intensity measurements) (Wilson, 1997) | 1863 reflections with I > 2σ(I) |
Tmin = ?, Tmax = ? | Rint = 0.060 |
7808 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.073 | All parameters refined |
wR(F2) = 0.083 | Δρmax = 2.22 e Å−3 |
S = 4.02 | Δρmin = −1.46 e Å−3 |
1863 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
244 parameters | Absolute structure parameter: 0.00 (999) |
2 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except for 4 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating Rfactorobs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.5701 (2) | 0.0603 (2) | 1.3336 (3) | 0.0272 (5) | |
N2 | 0.5030 (2) | 0.3998 (2) | 1.2333 (3) | 0.0281 (6) | |
N3 | 0.3479 (2) | 0.1902 (2) | 0.7115 (3) | 0.0164 (4) | |
N4 | 0.3112 (2) | 0.2653 (2) | 0.6018 (3) | 0.0196 (5) | |
C1 | 0.5311 (3) | 0.1229 (2) | 1.2386 (4) | 0.0176 (6) | |
C2 | 0.4949 (3) | 0.3122 (2) | 1.1807 (4) | 0.0188 (7) | |
C3 | 0.4857 (2) | 0.2022 (2) | 1.1260 (4) | 0.0132 (6) | |
C4 | 0.4371 (3) | 0.1696 (2) | 0.9743 (4) | 0.0147 (6) | |
C5 | 0.3919 (3) | 0.2377 (2) | 0.8453 (4) | 0.0137 (6) | |
C6 | 0.3396 (3) | 0.3781 (2) | 0.6549 (4) | 0.0192 (6) | |
C7 | 0.3840 (3) | 0.3610 (2) | 0.8368 (4) | 0.0181 (6) | |
C8 | 0.2627 (2) | 0.2349 (3) | 0.4469 (4) | 0.0187 (7) | |
C9 | 0.2549 (3) | 0.1256 (3) | 0.4005 (4) | 0.0214 (7) | |
C10 | 0.2051 (3) | 0.0958 (3) | 0.2467 (4) | 0.0300 (8) | |
C11 | 0.1625 (3) | 0.1759 (4) | 0.1371 (4) | 0.0347 (9) | |
C12 | 0.1704 (3) | 0.2854 (3) | 0.1843 (5) | 0.0329 (9) | |
C13 | 0.2216 (3) | 0.3162 (3) | 0.3365 (4) | 0.0237 (8) | |
H4 | 0.4364 (6) | 0.0851 (5) | 0.9431 (8) | 0.034 (2) | |
H6A | 0.4044 (6) | 0.4106 (6) | 0.5676 (9) | 0.043 (2) | |
H6B | 0.2617 (6) | 0.4293 (5) | 0.6496 (9) | 0.0368 (15) | |
H7A | 0.4669 (6) | 0.3991 (5) | 0.8556 (9) | 0.042 (2) | |
H7B | 0.3234 (7) | 0.3909 (5) | 0.9306 (8) | 0.042 (2) | |
H9 | 0.2865 (6) | 0.0644 (5) | 0.4845 (9) | 0.037 (2) | |
H10 | 0.1971 (8) | 0.0118 (7) | 0.2116 (9) | 0.057 (2) | |
H11 | 0.1231 (7) | 0.1564 (10) | 0.0156 (11) | 0.066 (3) | |
H12 | 0.1383 (8) | 0.3469 (9) | 0.0972 (10) | 0.057 (2) | |
H13 | 0.2263 (7) | 0.3981 (6) | 0.3674 (10) | 0.047 (2) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0338 (12) | 0.0205 (10) | 0.0273 (12) | 0.0042 (9) | −0.0115 (10) | 0.0033 (9) |
N2 | 0.0321 (13) | 0.0189 (11) | 0.0331 (13) | −0.0034 (9) | −0.0038 (11) | −0.0091 (10) |
N3 | 0.0236 (11) | 0.0118 (9) | 0.0138 (9) | 0.0000 (8) | −0.0022 (8) | −0.0020 (7) |
N4 | 0.0268 (13) | 0.0164 (11) | 0.0157 (11) | −0.0002 (9) | 0.0000 (10) | −0.0006 (9) |
C1 | 0.0181 (14) | 0.0170 (13) | 0.0177 (15) | 0.0008 (11) | −0.0033 (12) | −0.0001 (11) |
C2 | 0.017 (2) | 0.0151 (15) | 0.025 (2) | −0.0056 (11) | −0.0012 (13) | −0.0040 (12) |
C3 | 0.0129 (14) | 0.0120 (12) | 0.0147 (13) | −0.0008 (10) | −0.0012 (11) | −0.0019 (11) |
C4 | 0.0173 (14) | 0.0105 (12) | 0.0163 (13) | 0.0025 (10) | 0.0012 (11) | −0.0018 (11) |
C5 | 0.0153 (14) | 0.0094 (11) | 0.0165 (14) | −0.0009 (10) | −0.0004 (12) | −0.0005 (11) |
C6 | 0.023 (2) | 0.0149 (14) | 0.019 (2) | −0.0007 (11) | 0.0025 (13) | 0.0009 (12) |
C7 | 0.023 (2) | 0.0151 (13) | 0.0162 (14) | −0.0008 (12) | 0.0023 (12) | 0.0010 (12) |
C8 | 0.0139 (15) | 0.023 (2) | 0.019 (2) | −0.0003 (11) | 0.0006 (13) | −0.0017 (12) |
C9 | 0.020 (2) | 0.028 (2) | 0.0161 (14) | −0.0089 (13) | 0.0019 (12) | −0.0014 (13) |
C10 | 0.025 (2) | 0.047 (2) | 0.0185 (15) | −0.0188 (15) | 0.0038 (13) | −0.0088 (15) |
C11 | 0.015 (2) | 0.071 (3) | 0.018 (2) | −0.010 (2) | −0.0026 (14) | 0.001 (2) |
C12 | 0.014 (2) | 0.064 (3) | 0.021 (2) | 0.002 (2) | 0.0018 (14) | 0.009 (2) |
C13 | 0.015 (2) | 0.038 (2) | 0.0183 (15) | 0.0047 (13) | 0.0012 (12) | 0.0099 (15) |
H4 | 0.051 (4) | 0.017 (3) | 0.034 (3) | 0.006 (3) | −0.008 (3) | −0.010 (3) |
H6A | 0.044 (4) | 0.044 (4) | 0.042 (4) | −0.020 (3) | 0.007 (3) | 0.013 (3) |
H6B | 0.037 (3) | 0.030 (3) | 0.043 (4) | 0.013 (3) | 0.000 (3) | −0.009 (3) |
H7A | 0.041 (4) | 0.033 (3) | 0.052 (4) | −0.017 (3) | −0.015 (3) | 0.006 (3) |
H7B | 0.055 (4) | 0.043 (4) | 0.027 (3) | 0.018 (3) | 0.021 (3) | −0.001 (3) |
H9 | 0.047 (4) | 0.027 (3) | 0.036 (4) | −0.006 (3) | 0.004 (3) | 0.003 (3) |
H10 | 0.067 (5) | 0.067 (5) | 0.037 (4) | −0.029 (4) | 0.009 (4) | −0.019 (4) |
H11 | 0.037 (5) | 0.123 (9) | 0.038 (4) | −0.022 (4) | −0.015 (4) | −0.007 (5) |
H12 | 0.044 (5) | 0.089 (6) | 0.038 (5) | 0.015 (4) | 0.001 (4) | 0.021 (5) |
H13 | 0.055 (5) | 0.037 (4) | 0.048 (5) | 0.020 (4) | −0.004 (4) | 0.006 (4) |
Geometric parameters (Å, º) top
N1—C1 | 1.161 (3) | C6—H6B | 1.100 (7) |
N2—C2 | 1.155 (3) | C7—H7A | 1.077 (7) |
N3—C5 | 1.306 (3) | C7—H7B | 1.083 (9) |
N3—N4 | 1.331 (3) | C8—C9 | 1.392 (5) |
N4—C8 | 1.392 (3) | C8—C13 | 1.405 (4) |
N4—C6 | 1.481 (4) | C9—C10 | 1.388 (4) |
C1—C3 | 1.416 (4) | C9—H9 | 1.064 (8) |
C2—C3 | 1.419 (4) | C10—C11 | 1.396 (6) |
C3—C4 | 1.377 (4) | C10—H10 | 1.071 (10) |
C4—C5 | 1.413 (4) | C11—C12 | 1.396 (6) |
C4—H4 | 1.065 (7) | C11—H11 | 1.085 (8) |
C5—C7 | 1.516 (4) | C12—C13 | 1.387 (5) |
C6—C7 | 1.534 (4) | C12—H12 | 1.084 (10) |
C6—H6A | 1.093 (9) | C13—H13 | 1.035 (10) |
| | | |
C5—N3—N4 | 109.7 (2) | C6—C7—H7A | 111.4 (5) |
N3—N4—C8 | 120.6 (2) | C5—C7—H7B | 110.3 (5) |
N3—N4—C6 | 113.1 (2) | C6—C7—H7B | 111.9 (4) |
C8—N4—C6 | 125.9 (2) | H7A—C7—H7B | 109.7 (6) |
N1—C1—C3 | 178.0 (3) | N4—C8—C9 | 120.9 (3) |
N2—C2—C3 | 176.6 (3) | N4—C8—C13 | 119.2 (3) |
C4—C3—C1 | 119.6 (2) | C9—C8—C13 | 119.9 (3) |
C4—C3—C2 | 124.6 (3) | C10—C9—C8 | 120.6 (3) |
C1—C3—C2 | 115.8 (2) | C10—C9—H9 | 119.9 (5) |
C3—C4—C5 | 127.0 (2) | C8—C9—H9 | 119.6 (4) |
C3—C4—H4 | 119.0 (4) | C9—C10—C11 | 120.0 (3) |
C5—C4—H4 | 114.0 (4) | C9—C10—H10 | 120.9 (5) |
N3—C5—C4 | 117.3 (2) | C11—C10—H10 | 119.1 (5) |
N3—C5—C7 | 112.7 (2) | C10—C11—C12 | 119.3 (3) |
C4—C5—C7 | 130.0 (2) | C10—C11—H11 | 122.4 (8) |
N4—C6—C7 | 102.1 (2) | C12—C11—H11 | 118.3 (8) |
N4—C6—H6A | 108.4 (5) | C13—C12—C11 | 121.2 (3) |
C7—C6—H6A | 114.1 (4) | C13—C12—H12 | 120.1 (7) |
N4—C6—H6B | 109.9 (4) | C11—C12—H12 | 118.6 (7) |
C7—C6—H6B | 112.7 (4) | C12—C13—C8 | 119.0 (3) |
H6A—C6—H6B | 109.4 (6) | C12—C13—H13 | 119.3 (5) |
C5—C7—C6 | 101.4 (2) | C8—C13—H13 | 121.7 (5) |
C5—C7—H7A | 111.9 (4) | | |
Experimental details
| (90dcnp) | (100dcnp) | (200dcnp) | (290dcnp) |
Crystal data |
Chemical formula | C13H10N4 | C13H10N4 | C13H10N4 | C13H10N4 |
Mr | 222.25 | 222.25 | 222.25 | 222.25 |
Crystal system, space group | Monoclinic, Cc | Monoclinic, Cc | Monoclinic, Cc | Monoclinic, Cc |
Temperature (K) | 90 | 100 | 200 | 290 |
a, b, c (Å) | 11.5945 (3), 12.2912 (4), 7.8944 (2) | 11.5972 (2), 12.2873 (2), 7.8877 (1) | 11.7304 (4), 12.3278 (2), 7.8844 (2) | 11.8751 (5), 12.3735 (5), 7.8876 (3) |
β (°) | 90.018 (1) | 90.021 (1) | 90.173 (2) | 90.412 (2) |
V (Å3) | 1125.03 (5) | 1123.98 (3) | 1140.16 (5) | 1158.95 (8) |
Z | 4 | 4 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.08 | 0.08 | 0.08 | 0.08 |
Crystal size (mm) | 0.5 × 0.3 × 0.15 | 0.5 × 0.3 × 0.15 | 0.5 × 0.3 × 0.15 | 0.5 × 0.3 × 0.15 |
|
Data collection |
Diffractometer | Siemens SMART-CCD diffractometer | Siemens SMART-CCD diffractometer | Siemens SMART-CCD diffractometer | Siemens SMART-CCD diffractometer |
Absorption correction | – | – | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3921, 2029, 1893 | 16798, 10048, 6421 | 4054, 2402, 2394 | 4000, 2112, 1557 |
Rint | 0.030 | 0.029 | 0.038 | 0.035 |
(sin θ/λ)max (Å−1) | 0.650 | 1.134 | 0.649 | 0.650 |
Distance from specimen to detector (mm) | – | – | – | – |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.079, 1.16 | 0.076, 0.075, 2.38 | 0.046, 0.068, 1.67 | 0.051, 0.089, 1.31 |
No. of reflections | 2028 | 9977 | 2394 | 2098 |
No. of parameters | 195 | 194 | 195 | 195 |
No. of restraints | 2 | 2 | 2 | 2 |
H-atom treatment | Xyz and Uiso refined | All H-atom parameters refined | Xyz and Uiso refined | Xyz and Uiso refined |
Δρmax, Δρmin (e Å−3) | 0.15, −0.16 | 0.77, −0.44 | 0.22, −0.15 | 0.11, −0.10 |
Absolute structure | Flack H D (1983), Acta Cryst. A39, 876-881 | Flack H D (1983), Acta Cryst. A39, 876-881 | Flack H D (1983), Acta Cryst. A39, 876-881 | Flack H D (1983), Acta Cryst. A39, 876-881 |
Absolute structure parameter | −2.39 (236) | 0.66 (88) | 2.33 (205) | −1.67 (369) |
| (100Ndcnp) |
Crystal data |
Chemical formula | C13H10N4 |
Mr | 222.00 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 100 |
a, b, c (Å) | 11.571 (2), 12.258 (3), 7.868 (2) |
β (°) | 90.11 (3) |
V (Å3) | 1116.0 (4) |
Z | 4 |
Radiation type | Pulsed neutrons at ISIS, U K, λ = Variable (Time of flight) Å |
µ (mm−1) | Variable because time-of-flight (absorption changes with wavelength) |
Crystal size (mm) | 7 × 3 × 2 |
|
Data collection |
Diffractometer | SXD at ISIS, UK diffractometer |
Absorption correction | Semi-empirical (using intensity measurements) (Wilson, 1997) |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7808, 1867, 1863 |
Rint | 0.060 |
(sin θ/λ)max (Å−1) | – |
Distance from specimen to detector (mm) | h = 0→34, k = 0→38, l = −27→23 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.073, 0.083, 4.02 |
No. of reflections | 1863 |
No. of parameters | 244 |
No. of restraints | 2 |
H-atom treatment | All parameters refined |
Δρmax, Δρmin (e Å−3) | 2.22, −1.46 |
Absolute structure | Flack H D (1983), Acta Cryst. A39, 876-881 |
Absolute structure parameter | 0.00 (999) |