In the title compound, [Zn(C
4H
4O
4)(C
5H
5N)
2(H
2O)
2]
n, the Zn
II ion (site symmetry
) is coordinated in an octahedral geometry by two pyridine molecules, two water molecules and two bridging centrosymmetric
O-monodentate succinate dianions to create one-dimensional polymeric chains. The chains are cross-linked by O—H
O hydrogen bonds, forming sheets.
Supporting information
CCDC reference: 684658
Key indicators
- Single-crystal X-ray study
- T = 273 K
- Mean (C-C) = 0.008 Å
- R factor = 0.066
- wR factor = 0.108
- Data-to-parameter ratio = 13.1
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT164_ALERT_4_C Nr. of Refined C-H H-Atoms in Heavy-At Struct... 7
PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 8
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
A pyridine solution (10 ml) of succinic acid (0.116 g, 1 mmol) was added to an
aqueous solution (10 ml) of zinc acetate dihydrate (0.148 g, 0.673 mmol). The
mixture was then allowed to stand for several days at room temperature, after
which colourless blocks of (I) precipitated.
All the H atoms except H3A were located in a difference map and their positions
and Uiso values were freely refined. H3A was geometrically placed
(O—H = 0.82 Å) and refined as riding with Uiso(H) = 1.5
Ueq(H).
Data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski and Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski and Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: Mercury (Macrae et al., 2006) and local program.
catena-Poly[[diaquadipyridinezinc(II)]-µ-succinato]
top
Crystal data top
[Zn(C4H4O4)(C5H5N)2(H2O)2] | F(000) = 776 |
Mr = 375.67 | Dx = 1.583 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 2052 reflections |
a = 11.8142 (8) Å | θ = 2.9–27.5° |
b = 8.9111 (7) Å | µ = 1.59 mm−1 |
c = 14.9705 (10) Å | T = 273 K |
V = 1576.06 (19) Å3 | Block, colourless |
Z = 4 | 0.08 × 0.08 × 0.04 mm |
Data collection top
Bruker–Nonious APEXII CCD camera on κ-goniostat diffractometer | 1814 independent reflections |
Radiation source: fine-focus sealed tube | 1200 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.067 |
Detector resolution: 4096x4096pixels / 62x62mm pixels mm-1 | θmax = 27.6°, θmin = 3.2° |
ϕ and ω scans | h = −15→15 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −11→10 |
Tmin = 0.804, Tmax = 0.931 | l = −19→17 |
9256 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: difmap and geom |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.13 | w = 1/[σ2(Fo2) + 9.8897P] where P = (Fo2 + 2Fc2)/3 |
1814 reflections | (Δ/σ)max < 0.001 |
138 parameters | Δρmax = 0.55 e Å−3 |
0 restraints | Δρmin = −0.46 e Å−3 |
Crystal data top
[Zn(C4H4O4)(C5H5N)2(H2O)2] | V = 1576.06 (19) Å3 |
Mr = 375.67 | Z = 4 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 11.8142 (8) Å | µ = 1.59 mm−1 |
b = 8.9111 (7) Å | T = 273 K |
c = 14.9705 (10) Å | 0.08 × 0.08 × 0.04 mm |
Data collection top
Bruker–Nonious APEXII CCD camera on κ-goniostat diffractometer | 1814 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 1200 reflections with I > 2σ(I) |
Tmin = 0.804, Tmax = 0.931 | Rint = 0.067 |
9256 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.065 | 0 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.13 | Δρmax = 0.55 e Å−3 |
1814 reflections | Δρmin = −0.46 e Å−3 |
138 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Zn1 | 0.5000 | 0.0000 | 0.5000 | 0.0147 (2) | |
O3 | 0.6625 (3) | 0.0017 (4) | 0.4416 (2) | 0.0186 (7) | |
H3A | 0.6910 | 0.0850 | 0.4477 | 0.028* | |
O2 | 0.5136 (3) | 0.2237 (4) | 0.5340 (2) | 0.0179 (7) | |
O1 | 0.6873 (3) | 0.2905 (4) | 0.4901 (2) | 0.0229 (8) | |
C3 | 0.3411 (5) | 0.1656 (6) | 0.2097 (4) | 0.0290 (13) | |
C2 | 0.4391 (5) | 0.2285 (6) | 0.2438 (4) | 0.0254 (12) | |
C5 | 0.3356 (4) | 0.0065 (7) | 0.3386 (3) | 0.0206 (10) | |
C6 | 0.5888 (4) | 0.3201 (5) | 0.5168 (3) | 0.0172 (10) | |
N1 | 0.4308 (3) | 0.0673 (4) | 0.3719 (3) | 0.0156 (8) | |
C1 | 0.4810 (4) | 0.1762 (6) | 0.3235 (3) | 0.0199 (11) | |
C7 | 0.5529 (4) | 0.4835 (6) | 0.5275 (4) | 0.0224 (11) | |
C4 | 0.2892 (5) | 0.0528 (7) | 0.2586 (4) | 0.0279 (13) | |
H4 | 0.224 (5) | 0.010 (6) | 0.243 (3) | 0.025 (15)* | |
H1 | 0.549 (4) | 0.205 (6) | 0.345 (3) | 0.018 (13)* | |
H3 | 0.308 (5) | 0.199 (7) | 0.154 (4) | 0.035 (17)* | |
H5 | 0.304 (4) | −0.066 (6) | 0.376 (4) | 0.026 (15)* | |
H2 | 0.476 (5) | 0.295 (6) | 0.209 (4) | 0.028 (16)* | |
H7A | 0.540 (4) | 0.492 (6) | 0.591 (4) | 0.018 (13)* | |
H7 | 0.616 (4) | 0.549 (5) | 0.514 (3) | 0.014 (13)* | |
H3B | 0.694 (5) | −0.064 (7) | 0.459 (4) | 0.04 (2)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Zn1 | 0.0146 (3) | 0.0125 (3) | 0.0169 (4) | 0.0005 (4) | 0.0010 (3) | 0.0002 (4) |
O3 | 0.0190 (16) | 0.0113 (16) | 0.0254 (18) | 0.0048 (18) | 0.0012 (13) | 0.0012 (17) |
O2 | 0.0192 (16) | 0.0116 (16) | 0.0229 (16) | −0.0006 (14) | 0.0033 (14) | 0.0022 (14) |
O1 | 0.0160 (15) | 0.0137 (18) | 0.039 (2) | −0.0010 (17) | 0.0048 (15) | 0.0000 (13) |
C3 | 0.041 (3) | 0.026 (3) | 0.020 (3) | 0.004 (2) | −0.012 (2) | 0.001 (3) |
C2 | 0.036 (3) | 0.021 (3) | 0.019 (3) | 0.000 (2) | 0.004 (2) | −0.006 (2) |
C5 | 0.019 (2) | 0.022 (3) | 0.021 (2) | 0.000 (3) | 0.0002 (18) | 0.001 (2) |
C6 | 0.019 (2) | 0.015 (2) | 0.018 (3) | 0.003 (2) | −0.0046 (18) | 0.0011 (19) |
N1 | 0.0181 (19) | 0.012 (2) | 0.017 (2) | 0.0011 (17) | 0.0012 (16) | 0.0016 (17) |
C1 | 0.020 (3) | 0.018 (3) | 0.022 (3) | −0.001 (2) | −0.002 (2) | −0.001 (2) |
C7 | 0.020 (2) | 0.014 (3) | 0.034 (3) | −0.001 (2) | −0.005 (2) | −0.003 (2) |
C4 | 0.028 (3) | 0.026 (3) | 0.029 (3) | 0.003 (3) | −0.007 (2) | −0.005 (3) |
Geometric parameters (Å, º) top
Zn1—O2 | 2.064 (3) | C2—C1 | 1.374 (7) |
Zn1—O2i | 2.064 (3) | C2—H2 | 0.90 (6) |
Zn1—O3i | 2.110 (3) | C5—N1 | 1.345 (6) |
Zn1—O3 | 2.110 (3) | C5—C4 | 1.379 (7) |
Zn1—N1i | 2.170 (4) | C5—H5 | 0.93 (6) |
Zn1—N1 | 2.170 (4) | C6—C7 | 1.525 (7) |
O3—H3A | 0.8200 | N1—C1 | 1.348 (6) |
O3—H3B | 0.74 (6) | C1—H1 | 0.90 (5) |
O2—C6 | 1.263 (6) | C7—C7ii | 1.526 (9) |
O1—C6 | 1.258 (5) | C7—H7A | 0.97 (5) |
C3—C2 | 1.383 (8) | C7—H7 | 0.97 (5) |
C3—C4 | 1.387 (8) | C4—H4 | 0.89 (6) |
C3—H3 | 0.96 (6) | | |
| | | |
O2—Zn1—O2i | 180.0 | C1—C2—H2 | 123 (4) |
O2—Zn1—O3i | 88.60 (13) | C3—C2—H2 | 118 (4) |
O2i—Zn1—O3i | 91.40 (13) | N1—C5—C4 | 122.2 (5) |
O2—Zn1—O3 | 91.40 (13) | N1—C5—H5 | 113 (3) |
O2i—Zn1—O3 | 88.60 (13) | C4—C5—H5 | 125 (3) |
O3i—Zn1—O3 | 180.0 | O1—C6—O2 | 124.9 (4) |
O2—Zn1—N1i | 91.12 (14) | O1—C6—C7 | 119.4 (4) |
O2i—Zn1—N1i | 88.88 (14) | O2—C6—C7 | 115.7 (4) |
O3i—Zn1—N1i | 88.53 (14) | C5—N1—C1 | 117.3 (4) |
O3—Zn1—N1i | 91.47 (14) | C5—N1—Zn1 | 122.1 (3) |
O2—Zn1—N1 | 88.88 (14) | C1—N1—Zn1 | 120.5 (3) |
O2i—Zn1—N1 | 91.12 (14) | N1—C1—C2 | 123.5 (5) |
O3i—Zn1—N1 | 91.47 (14) | N1—C1—H1 | 114 (3) |
O3—Zn1—N1 | 88.53 (14) | C2—C1—H1 | 122 (3) |
N1i—Zn1—N1 | 180 | C6—C7—C7ii | 110.8 (5) |
Zn1—O3—H3A | 109.5 | C6—C7—H7A | 103 (3) |
Zn1—O3—H3B | 108 (5) | C7ii—C7—H7A | 112 (3) |
H3A—O3—H3B | 118.2 | C6—C7—H7 | 110 (3) |
C6—O2—Zn1 | 131.5 (3) | C7ii—C7—H7 | 114 (3) |
C2—C3—C4 | 118.0 (5) | H7A—C7—H7 | 106 (4) |
C2—C3—H3 | 122 (3) | C5—C4—C3 | 120.0 (5) |
C4—C3—H3 | 120 (3) | C5—C4—H4 | 116 (3) |
C1—C2—C3 | 118.9 (5) | C3—C4—H4 | 124 (4) |
| | | |
O3i—Zn1—O2—C6 | −174.6 (4) | O3—Zn1—N1—C5 | 137.5 (4) |
O3—Zn1—O2—C6 | 5.4 (4) | O2—Zn1—N1—C1 | 47.0 (4) |
N1i—Zn1—O2—C6 | 96.9 (4) | O2i—Zn1—N1—C1 | −133.0 (4) |
N1—Zn1—O2—C6 | −83.1 (4) | O3i—Zn1—N1—C1 | 135.6 (4) |
C4—C3—C2—C1 | 0.5 (8) | O3—Zn1—N1—C1 | −44.4 (4) |
Zn1—O2—C6—O1 | −16.8 (7) | C5—N1—C1—C2 | 1.0 (7) |
Zn1—O2—C6—C7 | 161.3 (3) | Zn1—N1—C1—C2 | −177.2 (4) |
C4—C5—N1—C1 | −0.5 (7) | C3—C2—C1—N1 | −1.0 (8) |
C4—C5—N1—Zn1 | 177.6 (4) | O1—C6—C7—C7ii | 123.7 (6) |
O2—Zn1—N1—C5 | −131.1 (4) | O2—C6—C7—C7ii | −54.5 (7) |
O2i—Zn1—N1—C5 | 48.9 (4) | N1—C5—C4—C3 | 0.1 (9) |
O3i—Zn1—N1—C5 | −42.5 (4) | C2—C3—C4—C5 | −0.1 (9) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O1 | 0.82 | 1.94 | 2.690 (5) | 152 |
O3—H3B···O1iii | 0.74 (6) | 1.97 (6) | 2.687 (5) | 164 (5) |
Symmetry code: (iii) −x+3/2, y−1/2, z. |
Experimental details
Crystal data |
Chemical formula | [Zn(C4H4O4)(C5H5N)2(H2O)2] |
Mr | 375.67 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 273 |
a, b, c (Å) | 11.8142 (8), 8.9111 (7), 14.9705 (10) |
V (Å3) | 1576.06 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.59 |
Crystal size (mm) | 0.08 × 0.08 × 0.04 |
|
Data collection |
Diffractometer | Bruker–Nonious APEXII CCD camera on κ-goniostat diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.804, 0.931 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9256, 1814, 1200 |
Rint | 0.067 |
(sin θ/λ)max (Å−1) | 0.651 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.108, 1.13 |
No. of reflections | 1814 |
No. of parameters | 138 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.55, −0.46 |
Selected geometric parameters (Å, º) topZn1—O2 | 2.064 (3) | Zn1—N1 | 2.170 (4) |
Zn1—O3 | 2.110 (3) | | |
| | | |
O2i—Zn1—N1i | 88.88 (14) | | |
Symmetry code: (i) −x+1, −y, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O1 | 0.82 | 1.94 | 2.690 (5) | 152 |
O3—H3B···O1ii | 0.74 (6) | 1.97 (6) | 2.687 (5) | 164 (5) |
Symmetry code: (ii) −x+3/2, y−1/2, z. |
The molecular structure of the title compound, (I), (Fig. 1), consists of zinc(II) ions linked through succinate bridges to create one-dimensional polymeric chains. Each ZnII ion (site symmetry 1) is further coordinated by two pyridine molecules and two water molecules resulting in a slightly distorted trans-ZnN2O4 octahedral geometry (Table 1).
The coordinated water molecules form both intrachain O—H···O hydrogen bonds with the uncoordinated carboxyl group of a succinate ligand within the chain and intermolecular hydrogen bond with those in an adjacent chain (Fig. 2, Table 2). For a related structure, see Ohmura et al. (2003).