Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S241431461600167X/hb4011sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S241431461600167X/hb4011Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S241431461600167X/hb4011Isup3.cml |
CCDC reference: 1450256
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean (C-C) = 0.002 Å
- H-atom completeness 91%
- R factor = 0.031
- wR factor = 0.101
- Data-to-parameter ratio = 12.4
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT919_ALERT_3_B Reflection # Likely Affected by the Beamstop ... 1 Check
Alert level C CHEMW01_ALERT_1_C The difference between the given and expected weight for compound is greater 1 mass unit. Check that all hydrogen atoms have been taken into account. PLAT041_ALERT_1_C Calc. and Reported SumFormula Strings Differ Please Check PLAT934_ALERT_3_C Number of (Iobs-Icalc)/SigmaW > 10 Outliers .... 1 Check
Alert level G FORMU01_ALERT_1_G There is a discrepancy between the atom counts in the _chemical_formula_sum and _chemical_formula_moiety. This is usually due to the moiety formula being in the wrong format. Atom count from _chemical_formula_sum: C18 H20 N2 O5 Atom count from _chemical_formula_moiety:C18 H18 N2 O5 FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the _chemical_formula_sum and the formula from the _atom_site* data. Atom count from _chemical_formula_sum:C18 H20 N2 O5 Atom count from the _atom_site data: C18 H18 N2 O5 CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected. CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional? From the CIF: _cell_formula_units_Z 4 From the CIF: _chemical_formula_sum C18 H20 N2 O5 TEST: Compare cell contents of formula and atom_site data atom Z*formula cif sites diff C 72.00 72.00 0.00 H 80.00 72.00 8.00 N 8.00 8.00 0.00 O 20.00 20.00 0.00 PLAT005_ALERT_5_G No Embedded Refinement Details found in the CIF Please Do ! PLAT909_ALERT_3_G Percentage of Observed Data at Theta(Max) Still 74 % PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Th(Min) ... 1 Report
0 ALERT level A = Most likely a serious problem - resolve or explain 1 ALERT level B = A potentially serious problem, consider carefully 3 ALERT level C = Check. Ensure it is not caused by an omission or oversight 7 ALERT level G = General information/check it is not something unexpected 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: APEX2 (Bruker, 2009).
C18H20N2O5 | F(000) = 720 |
Mr = 342.34 | Dx = 1.410 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 22.135 (4) Å | Cell parameters from 6712 reflections |
b = 8.4680 (16) Å | θ = 2.6–28.4° |
c = 8.6198 (17) Å | µ = 0.10 mm−1 |
β = 93.287 (2)° | T = 120 K |
V = 1613.0 (5) Å3 | Needle, colorless |
Z = 4 | 0.50 × 0.20 × 0.20 mm |
Bruker APEXII KY CCD diffractometer | 2852 independent reflections |
Radiation source: fine focus sealed tube | 2525 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −26→26 |
Tmin = 0.883, Tmax = 0.979 | k = −10→10 |
15058 measured reflections | l = −10→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.101 | H-atom parameters constrained |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0579P)2 + 0.3685P] where P = (Fo2 + 2Fc2)/3 |
2852 reflections | (Δ/σ)max < 0.001 |
230 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.27372 (6) | 0.16288 (15) | 0.21202 (14) | 0.0199 (3) | |
C2 | 0.32161 (6) | 0.13524 (16) | 0.10688 (14) | 0.0201 (3) | |
C3 | 0.33172 (6) | −0.01921 (16) | 0.05734 (15) | 0.0208 (3) | |
H3 | 0.308 | −0.1012 | 0.092 | 0.025* | |
C4 | 0.37645 (6) | −0.05059 (15) | −0.04213 (15) | 0.0206 (3) | |
C5 | 0.41349 (6) | 0.07362 (16) | −0.09198 (15) | 0.0214 (3) | |
C6 | 0.40284 (6) | 0.22591 (16) | −0.04297 (15) | 0.0232 (3) | |
H6 | 0.4267 | 0.3083 | −0.0764 | 0.028* | |
C7 | 0.35692 (6) | 0.25712 (16) | 0.05578 (15) | 0.0223 (3) | |
H7 | 0.3499 | 0.3601 | 0.0876 | 0.027* | |
C8 | 0.35611 (7) | −0.32582 (17) | −0.04182 (18) | 0.0304 (3) | |
H8A | 0.3632 | −0.3325 | 0.0689 | 0.046* | |
H8B | 0.3691 | −0.4219 | −0.0888 | 0.046* | |
H8C | 0.3137 | −0.3104 | −0.0668 | 0.046* | |
C9 | 0.50117 (6) | 0.14775 (18) | −0.22004 (18) | 0.0311 (3) | |
H9A | 0.4817 | 0.2318 | −0.2786 | 0.047* | |
H9B | 0.532 | 0.1013 | −0.2795 | 0.047* | |
H9C | 0.5192 | 0.189 | −0.1245 | 0.047* | |
C10 | 0.21076 (6) | 0.29230 (16) | 0.33921 (14) | 0.0208 (3) | |
C11 | 0.17893 (6) | 0.42755 (16) | 0.39717 (15) | 0.0214 (3) | |
C12 | 0.13070 (6) | 0.39841 (16) | 0.49227 (14) | 0.0207 (3) | |
H12 | 0.1203 | 0.2951 | 0.5158 | 0.025* | |
C13 | 0.09880 (6) | 0.52202 (16) | 0.55061 (15) | 0.0207 (3) | |
C14 | 0.11468 (6) | 0.67876 (16) | 0.51522 (14) | 0.0207 (3) | |
C15 | 0.16219 (6) | 0.70723 (16) | 0.42105 (15) | 0.0236 (3) | |
H15 | 0.1728 | 0.8104 | 0.3973 | 0.028* | |
C16 | 0.19402 (6) | 0.58128 (17) | 0.36215 (15) | 0.0233 (3) | |
H16 | 0.2258 | 0.6007 | 0.2986 | 0.028* | |
C17 | 0.03218 (6) | 0.34858 (16) | 0.67204 (16) | 0.0260 (3) | |
H17A | 0.0216 | 0.2969 | 0.5751 | 0.039* | |
H17B | −0.0024 | 0.3509 | 0.7342 | 0.039* | |
H17C | 0.0645 | 0.2919 | 0.7263 | 0.039* | |
C18 | 0.09139 (7) | 0.95081 (16) | 0.53565 (17) | 0.0289 (3) | |
H18A | 0.1322 | 0.9784 | 0.5683 | 0.043* | |
H18B | 0.0638 | 1.0192 | 0.5855 | 0.043* | |
H18C | 0.0858 | 0.9623 | 0.425 | 0.043* | |
N1 | 0.24338 (5) | 0.05939 (14) | 0.28535 (13) | 0.0241 (3) | |
N2 | 0.20193 (5) | 0.14444 (14) | 0.36880 (13) | 0.0248 (3) | |
O1 | 0.25592 (4) | 0.31369 (11) | 0.24030 (10) | 0.0211 (2) | |
O2 | 0.38929 (4) | −0.19607 (11) | −0.09947 (11) | 0.0259 (2) | |
O3 | 0.45738 (4) | 0.03030 (11) | −0.18649 (11) | 0.0280 (2) | |
O4 | 0.05134 (4) | 0.50644 (11) | 0.64300 (10) | 0.0239 (2) | |
O5 | 0.08007 (4) | 0.79125 (11) | 0.57747 (11) | 0.0248 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0205 (6) | 0.0193 (7) | 0.0198 (6) | 0.0012 (5) | −0.0002 (5) | −0.0013 (5) |
C2 | 0.0194 (6) | 0.0228 (7) | 0.0181 (6) | 0.0007 (5) | 0.0000 (5) | 0.0007 (5) |
C3 | 0.0199 (6) | 0.0211 (7) | 0.0213 (7) | −0.0023 (5) | 0.0014 (5) | 0.0019 (5) |
C4 | 0.0212 (6) | 0.0192 (7) | 0.0213 (7) | 0.0012 (5) | 0.0004 (5) | −0.0004 (5) |
C5 | 0.0197 (6) | 0.0241 (7) | 0.0206 (7) | 0.0020 (5) | 0.0028 (5) | 0.0017 (5) |
C6 | 0.0228 (7) | 0.0217 (7) | 0.0252 (7) | −0.0036 (5) | 0.0035 (5) | 0.0041 (5) |
C7 | 0.0255 (7) | 0.0185 (7) | 0.0231 (7) | 0.0020 (5) | 0.0027 (5) | −0.0008 (5) |
C8 | 0.0346 (8) | 0.0199 (7) | 0.0377 (8) | −0.0033 (6) | 0.0109 (6) | −0.0030 (6) |
C9 | 0.0230 (7) | 0.0332 (8) | 0.0380 (8) | −0.0024 (6) | 0.0110 (6) | 0.0047 (6) |
C10 | 0.0180 (6) | 0.0274 (7) | 0.0172 (6) | −0.0010 (5) | 0.0018 (5) | −0.0006 (5) |
C11 | 0.0193 (6) | 0.0257 (7) | 0.0190 (6) | 0.0010 (5) | −0.0004 (5) | −0.0011 (5) |
C12 | 0.0211 (6) | 0.0203 (7) | 0.0205 (7) | −0.0014 (5) | 0.0002 (5) | −0.0005 (5) |
C13 | 0.0189 (6) | 0.0251 (7) | 0.0182 (6) | −0.0005 (5) | 0.0006 (5) | −0.0007 (5) |
C14 | 0.0202 (6) | 0.0221 (7) | 0.0198 (6) | 0.0011 (5) | −0.0002 (5) | −0.0021 (5) |
C15 | 0.0235 (7) | 0.0217 (7) | 0.0255 (7) | −0.0022 (5) | 0.0017 (5) | 0.0011 (5) |
C16 | 0.0199 (6) | 0.0289 (8) | 0.0214 (7) | −0.0019 (6) | 0.0034 (5) | 0.0011 (5) |
C17 | 0.0263 (7) | 0.0227 (7) | 0.0300 (7) | −0.0018 (6) | 0.0088 (6) | 0.0010 (6) |
C18 | 0.0350 (8) | 0.0194 (7) | 0.0327 (8) | 0.0017 (6) | 0.0071 (6) | 0.0012 (6) |
N1 | 0.0238 (6) | 0.0229 (6) | 0.0261 (6) | 0.0015 (5) | 0.0069 (5) | −0.0007 (5) |
N2 | 0.0233 (6) | 0.0244 (6) | 0.0275 (6) | 0.0014 (5) | 0.0076 (5) | −0.0018 (5) |
O1 | 0.0214 (5) | 0.0209 (5) | 0.0215 (5) | 0.0016 (4) | 0.0052 (4) | −0.0004 (4) |
O2 | 0.0291 (5) | 0.0186 (5) | 0.0310 (5) | −0.0006 (4) | 0.0116 (4) | −0.0028 (4) |
O3 | 0.0256 (5) | 0.0254 (5) | 0.0344 (6) | −0.0002 (4) | 0.0140 (4) | 0.0010 (4) |
O4 | 0.0249 (5) | 0.0213 (5) | 0.0266 (5) | −0.0006 (4) | 0.0099 (4) | −0.0003 (4) |
O5 | 0.0274 (5) | 0.0193 (5) | 0.0283 (5) | 0.0010 (4) | 0.0073 (4) | −0.0013 (4) |
C1—N1 | 1.2911 (17) | C10—O1 | 1.3625 (15) |
C1—O1 | 1.3625 (16) | C10—C11 | 1.4485 (19) |
C1—C2 | 1.4528 (18) | C11—C16 | 1.382 (2) |
C2—C7 | 1.3818 (18) | C11—C12 | 1.4048 (18) |
C2—C3 | 1.3978 (19) | C12—C13 | 1.3740 (19) |
C3—C4 | 1.3723 (18) | C12—H12 | 0.93 |
C3—H3 | 0.93 | C13—O4 | 1.3606 (16) |
C4—O2 | 1.3634 (16) | C13—C14 | 1.4108 (19) |
C4—C5 | 1.4156 (18) | C14—O5 | 1.3525 (16) |
C5—O3 | 1.3538 (16) | C14—C15 | 1.3861 (19) |
C5—C6 | 1.3815 (19) | C15—C16 | 1.3902 (19) |
C6—C7 | 1.3882 (19) | C15—H15 | 0.93 |
C6—H6 | 0.93 | C16—H16 | 0.93 |
C7—H7 | 0.93 | C17—O4 | 1.4289 (16) |
C8—O2 | 1.4266 (17) | C17—H17A | 0.96 |
C8—H8A | 0.96 | C17—H17B | 0.96 |
C8—H8B | 0.96 | C17—H17C | 0.96 |
C8—H8C | 0.96 | C18—O5 | 1.4243 (16) |
C9—O3 | 1.4298 (17) | C18—H18A | 0.96 |
C9—H9A | 0.96 | C18—H18B | 0.96 |
C9—H9B | 0.96 | C18—H18C | 0.96 |
C9—H9C | 0.96 | N1—N2 | 1.3978 (15) |
C10—N2 | 1.2949 (18) | ||
N1—C1—O1 | 112.63 (11) | C16—C11—C10 | 122.77 (12) |
N1—C1—C2 | 127.93 (12) | C12—C11—C10 | 117.60 (12) |
O1—C1—C2 | 119.44 (11) | C13—C12—C11 | 120.23 (12) |
C7—C2—C3 | 119.88 (12) | C13—C12—H12 | 119.9 |
C7—C2—C1 | 121.65 (12) | C11—C12—H12 | 119.9 |
C3—C2—C1 | 118.47 (12) | O4—C13—C12 | 124.79 (12) |
C4—C3—C2 | 120.39 (12) | O4—C13—C14 | 115.34 (11) |
C4—C3—H3 | 119.8 | C12—C13—C14 | 119.86 (12) |
C2—C3—H3 | 119.8 | O5—C14—C15 | 125.16 (12) |
O2—C4—C3 | 125.06 (12) | O5—C14—C13 | 115.02 (11) |
O2—C4—C5 | 115.15 (11) | C15—C14—C13 | 119.81 (12) |
C3—C4—C5 | 119.80 (12) | C14—C15—C16 | 119.86 (12) |
O3—C5—C6 | 125.30 (12) | C14—C15—H15 | 120.1 |
O3—C5—C4 | 115.44 (12) | C16—C15—H15 | 120.1 |
C6—C5—C4 | 119.26 (12) | C11—C16—C15 | 120.61 (12) |
C5—C6—C7 | 120.60 (12) | C11—C16—H16 | 119.7 |
C5—C6—H6 | 119.7 | C15—C16—H16 | 119.7 |
C7—C6—H6 | 119.7 | O4—C17—H17A | 109.5 |
C2—C7—C6 | 120.04 (12) | O4—C17—H17B | 109.5 |
C2—C7—H7 | 120.0 | H17A—C17—H17B | 109.5 |
C6—C7—H7 | 120.0 | O4—C17—H17C | 109.5 |
O2—C8—H8A | 109.5 | H17A—C17—H17C | 109.5 |
O2—C8—H8B | 109.5 | H17B—C17—H17C | 109.5 |
H8A—C8—H8B | 109.5 | O5—C18—H18A | 109.5 |
O2—C8—H8C | 109.5 | O5—C18—H18B | 109.5 |
H8A—C8—H8C | 109.5 | H18A—C18—H18B | 109.5 |
H8B—C8—H8C | 109.5 | O5—C18—H18C | 109.5 |
O3—C9—H9A | 109.5 | H18A—C18—H18C | 109.5 |
O3—C9—H9B | 109.5 | H18B—C18—H18C | 109.5 |
H9A—C9—H9B | 109.5 | C1—N1—N2 | 106.10 (11) |
O3—C9—H9C | 109.5 | C10—N2—N1 | 106.61 (10) |
H9A—C9—H9C | 109.5 | C1—O1—C10 | 102.56 (10) |
H9B—C9—H9C | 109.5 | C4—O2—C8 | 116.58 (10) |
N2—C10—O1 | 112.10 (11) | C5—O3—C9 | 116.83 (11) |
N2—C10—C11 | 127.93 (12) | C13—O4—C17 | 116.11 (10) |
O1—C10—C11 | 119.96 (11) | C14—O5—C18 | 117.12 (10) |
C16—C11—C12 | 119.63 (12) | ||
N1—C1—C2—C7 | −169.37 (13) | C12—C13—C14—O5 | 179.47 (11) |
O1—C1—C2—C7 | 11.53 (19) | O4—C13—C14—C15 | −179.58 (11) |
N1—C1—C2—C3 | 10.6 (2) | C12—C13—C14—C15 | 0.35 (19) |
O1—C1—C2—C3 | −168.55 (11) | O5—C14—C15—C16 | −179.14 (12) |
C7—C2—C3—C4 | −0.16 (19) | C13—C14—C15—C16 | −0.11 (19) |
C1—C2—C3—C4 | 179.92 (11) | C12—C11—C16—C15 | 0.5 (2) |
C2—C3—C4—O2 | −178.77 (12) | C10—C11—C16—C15 | −179.81 (12) |
C2—C3—C4—C5 | 1.49 (19) | C14—C15—C16—C11 | −0.3 (2) |
O2—C4—C5—O3 | −1.52 (17) | O1—C1—N1—N2 | 0.27 (14) |
C3—C4—C5—O3 | 178.25 (11) | C2—C1—N1—N2 | −178.88 (12) |
O2—C4—C5—C6 | 178.38 (11) | O1—C10—N2—N1 | −0.03 (14) |
C3—C4—C5—C6 | −1.85 (19) | C11—C10—N2—N1 | 179.64 (12) |
O3—C5—C6—C7 | −179.23 (12) | C1—N1—N2—C10 | −0.14 (14) |
C4—C5—C6—C7 | 0.9 (2) | N1—C1—O1—C10 | −0.28 (14) |
C3—C2—C7—C6 | −0.83 (19) | C2—C1—O1—C10 | 178.95 (11) |
C1—C2—C7—C6 | 179.10 (12) | N2—C10—O1—C1 | 0.18 (14) |
C5—C6—C7—C2 | 0.4 (2) | C11—C10—O1—C1 | −179.52 (11) |
N2—C10—C11—C16 | 177.36 (13) | C3—C4—O2—C8 | −4.66 (19) |
O1—C10—C11—C16 | −3.00 (19) | C5—C4—O2—C8 | 175.09 (12) |
N2—C10—C11—C12 | −2.9 (2) | C6—C5—O3—C9 | 9.25 (19) |
O1—C10—C11—C12 | 176.74 (11) | C4—C5—O3—C9 | −170.85 (12) |
C16—C11—C12—C13 | −0.21 (19) | C12—C13—O4—C17 | −3.73 (18) |
C10—C11—C12—C13 | −179.96 (11) | C14—C13—O4—C17 | 176.20 (11) |
C11—C12—C13—O4 | 179.74 (11) | C15—C14—O5—C18 | 3.64 (19) |
C11—C12—C13—C14 | −0.19 (19) | C13—C14—O5—C18 | −175.43 (11) |
O4—C13—C14—O5 | −0.46 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C17—H17B···O5i | 0.96 | 2.48 | 3.4185 (18) | 165 |
C18—H18C···O4ii | 0.96 | 2.52 | 3.4682 (18) | 170 |
Symmetry codes: (i) −x, y−1/2, −z+3/2; (ii) x, −y+3/2, z−1/2. |