Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536809044663/hb5185sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536809044663/hb5185Isup2.hkl |
CCDC reference: 754478
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.002 Å
- R factor = 0.048
- wR factor = 0.137
- Data-to-parameter ratio = 25.3
checkCIF/PLATON results
No syntax errors found
Alert level C SHFSU01_ALERT_2_C Test not performed. _refine_ls_shift/su_max and _refine_ls_shift/esd_max not present. Absolute value of the parameter shift to su ratio given 0.001 PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.06 PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 40
Alert level G PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 14 PLAT793_ALERT_4_G The Model has Chirality at C2 (Verify) .... S PLAT793_ALERT_4_G The Model has Chirality at C3 (Verify) .... S
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 4 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Tartaric acid (0.01 mol, 1.5 g) was dissolved in 50 ml of methanol in a round bottom flask. 2,6-Diaminopyridine (0.02 mol, 2.2 g) was added in small portions to the flask with stirring. The reaction mixture was left stirring for 3 h at room temperature. Brown blocks of (I) were separated, washed with methanol and dried at 353 K.
All the hydrogen atoms were located from difference Fourier maps and allowed to refine freely [ranges: C—H = 0.922 (18) – 0.984 (15) Å; N—H = 0.827 (18) – 0.933 (14) Å]. The highest residual electron density peak is located at 0.77 Å from atom C2 and the deepest hole is located at 1.17 Å from atom C14.
The asymmetric unit of the title compound, (I) (Fig. 1), comprises of two 2,6-diaminopyridinium cations, a tartrate dianion and a water molecule. Two intermolecular protons transfer from the carboxylic groups of tartaric acid to atoms N1 & N4 of the 2,6-diaminopyridine moiety has resulted in the formation of ions. The protonated N1 atom and the N2 atom of the amino group are hydrogen bonded to the carboxyl group (atoms O5 & O6) via a pair of N—H···O hydrogen bonds forming an R22(8) ring motif (Fig. 1, Bernstein et al., 1995). The two 2,6-diaminopyridinium cations (N1–N3/C5–C9) and (N4–N6/C10–C14) are essentially planar, with maximum devations of 0.023 (1) and 0.026 (1) Å, respectively, for atoms C6 and C11. Comparing with the unprotonated structure (De cires-Mejias et al., 2004), protonation of atoms N1 & N4 have widened the C—N—C angles to 123.51 (8) and 123.92 (9)°, respectively, for angles of C5—N1—C9 and C10—N4—C14. The bond lengths (Allen et al., 1987) and angles observed are within normal ranges and are consistent with those related structures (Al-Dajani, Abdallah et al., 2009; Al-Dajani, Salhin et al., 2009).
The crystal structure of (I) is mainly stabilized by a network of N—H···O and C—H···O hydrogen bonds. Each N atom in the cations participates in intermolecular hydrogen bonds. In the crystal structure (Fig. 2), the tartrate anions and water molecules are linked into chains along the c axis by intermolecular O1—H1O1···O4, O2—H1O2···O4, O1W—H1W1···O3, O1W—H1W1···O4, O1W—H2W1···O5 and C2—H2A···O3 hydrogen bonds (Table 1). The 2,6-diaminopyridinium cations further linked the anions and water molecules into a three-dimensional extended structure by a network of N—H···O hydrogen bonds (Table 1). The crystal structure is further stabilized by weak intermolecular π–π interactions [Cg1···Cg1 = 3.6950 (6) Å; Cg1 is the centroid of the N1/C5–C9 pyridine ring].
For related structures, see: Al-Dajani, Abdallah et al. (2009); Al-Dajani, Salhin et al. (2009). For hydrogen-bond motifs, see: Bernstein et al. (1995). For bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
2C5H8N3+·C4H4O62−·H2O | F(000) = 816 |
Mr = 386.38 | Dx = 1.448 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9979 reflections |
a = 14.4722 (2) Å | θ = 2.6–33.1° |
b = 15.7270 (2) Å | µ = 0.12 mm−1 |
c = 7.8419 (1) Å | T = 296 K |
β = 96.916 (1)° | Block, brown |
V = 1771.86 (4) Å3 | 0.44 × 0.33 × 0.26 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 8384 independent reflections |
Radiation source: fine-focus sealed tube | 5761 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
φ and ω scans | θmax = 36.1°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −23→23 |
Tmin = 0.950, Tmax = 0.970 | k = −25→24 |
55803 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.137 | All H-atom parameters refined |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0645P)2 + 0.1774P] where P = (Fo2 + 2Fc2)/3 |
8384 reflections | (Δ/σ)max < 0.001 |
332 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
2C5H8N3+·C4H4O62−·H2O | V = 1771.86 (4) Å3 |
Mr = 386.38 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.4722 (2) Å | µ = 0.12 mm−1 |
b = 15.7270 (2) Å | T = 296 K |
c = 7.8419 (1) Å | 0.44 × 0.33 × 0.26 mm |
β = 96.916 (1)° |
Bruker SMART APEXII CCD diffractometer | 8384 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 5761 reflections with I > 2σ(I) |
Tmin = 0.950, Tmax = 0.970 | Rint = 0.029 |
55803 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.137 | All H-atom parameters refined |
S = 1.04 | Δρmax = 0.33 e Å−3 |
8384 reflections | Δρmin = −0.24 e Å−3 |
332 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.14121 (5) | 0.62179 (5) | 0.37307 (9) | 0.03748 (15) | |
O2 | 0.33130 (5) | 0.69021 (5) | 0.36761 (10) | 0.03834 (16) | |
O3 | 0.09223 (6) | 0.78743 (6) | 0.35992 (11) | 0.0505 (2) | |
O4 | 0.19983 (6) | 0.82535 (5) | 0.57216 (9) | 0.04158 (17) | |
O5 | 0.28815 (5) | 0.55133 (5) | 0.71274 (9) | 0.04001 (16) | |
O6 | 0.36515 (6) | 0.53101 (5) | 0.48798 (9) | 0.04409 (18) | |
C1 | 0.15720 (6) | 0.77090 (6) | 0.47338 (11) | 0.03144 (17) | |
C2 | 0.18625 (6) | 0.67770 (6) | 0.49999 (10) | 0.02824 (15) | |
C3 | 0.29147 (6) | 0.66622 (6) | 0.51725 (10) | 0.02834 (15) | |
C4 | 0.31696 (6) | 0.57521 (6) | 0.57453 (10) | 0.02985 (16) | |
N1 | 0.39658 (5) | 0.44405 (5) | 0.90954 (9) | 0.02900 (14) | |
N2 | 0.47289 (7) | 0.39813 (7) | 0.68421 (11) | 0.0423 (2) | |
N3 | 0.31436 (7) | 0.50158 (7) | 1.11702 (12) | 0.0429 (2) | |
C5 | 0.46341 (6) | 0.39419 (6) | 0.85246 (11) | 0.03136 (17) | |
C6 | 0.51647 (7) | 0.34231 (7) | 0.97048 (14) | 0.0404 (2) | |
C7 | 0.49815 (8) | 0.34277 (7) | 1.13904 (14) | 0.0427 (2) | |
C8 | 0.43089 (8) | 0.39418 (7) | 1.19503 (12) | 0.0395 (2) | |
C9 | 0.38033 (6) | 0.44752 (6) | 1.07627 (10) | 0.03057 (16) | |
N4 | 0.07411 (6) | 0.29439 (6) | 0.34459 (12) | 0.03809 (18) | |
N5 | 0.05279 (8) | 0.15005 (7) | 0.31936 (18) | 0.0562 (3) | |
N6 | 0.07972 (10) | 0.44052 (8) | 0.3524 (2) | 0.0649 (3) | |
C10 | 0.10707 (7) | 0.21441 (7) | 0.37940 (14) | 0.0394 (2) | |
C11 | 0.19414 (8) | 0.20559 (8) | 0.47490 (18) | 0.0504 (3) | |
C12 | 0.24392 (8) | 0.27782 (10) | 0.52373 (19) | 0.0564 (3) | |
C13 | 0.20988 (9) | 0.35831 (9) | 0.48473 (18) | 0.0534 (3) | |
C14 | 0.12190 (8) | 0.36637 (7) | 0.39441 (15) | 0.0426 (2) | |
O1W | 0.11303 (7) | 0.52769 (6) | 0.82780 (15) | 0.0559 (2) | |
H1O1 | 0.1548 (11) | 0.6424 (10) | 0.272 (2) | 0.057 (4)* | |
H1O2 | 0.2904 (13) | 0.6826 (10) | 0.278 (2) | 0.067 (5)* | |
H1N1 | 0.3619 (9) | 0.4801 (8) | 0.8319 (18) | 0.044 (3)* | |
H1N2 | 0.5253 (12) | 0.3800 (10) | 0.650 (2) | 0.062 (4)* | |
H2N2 | 0.4425 (9) | 0.4390 (9) | 0.6238 (18) | 0.045 (3)* | |
H1N3 | 0.2911 (11) | 0.5406 (11) | 1.038 (2) | 0.065 (5)* | |
H2N3 | 0.3161 (12) | 0.5144 (10) | 1.224 (2) | 0.067 (5)* | |
H1N4 | 0.0176 (12) | 0.2971 (10) | 0.276 (2) | 0.059 (4)* | |
H1N5 | 0.0716 (12) | 0.1009 (12) | 0.338 (2) | 0.068 (5)* | |
H2N5 | −0.0001 (12) | 0.1605 (10) | 0.253 (2) | 0.059 (4)* | |
H1N6 | 0.0204 (12) | 0.4416 (10) | 0.302 (2) | 0.060 (4)* | |
H2N6 | 0.1102 (14) | 0.4860 (12) | 0.389 (3) | 0.079 (5)* | |
H2A | 0.1657 (8) | 0.6614 (7) | 0.6076 (14) | 0.030 (3)* | |
H3A | 0.3165 (9) | 0.7015 (7) | 0.6120 (16) | 0.034 (3)* | |
H6A | 0.5634 (12) | 0.3070 (10) | 0.937 (2) | 0.063 (4)* | |
H7A | 0.5370 (10) | 0.3053 (9) | 1.2187 (18) | 0.050 (4)* | |
H8A | 0.4196 (10) | 0.3943 (9) | 1.3120 (19) | 0.051 (4)* | |
H11A | 0.2168 (12) | 0.1515 (11) | 0.498 (2) | 0.067 (5)* | |
H12A | 0.3045 (13) | 0.2700 (11) | 0.588 (2) | 0.075 (5)* | |
H13A | 0.2436 (12) | 0.4097 (11) | 0.514 (2) | 0.069 (5)* | |
H1W1 | 0.1128 (16) | 0.5645 (16) | 0.907 (3) | 0.102 (7)* | |
H2W1 | 0.1669 (15) | 0.5349 (13) | 0.785 (3) | 0.087 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0370 (3) | 0.0357 (4) | 0.0381 (3) | −0.0092 (3) | −0.0024 (3) | −0.0016 (3) |
O2 | 0.0333 (3) | 0.0438 (4) | 0.0384 (3) | −0.0046 (3) | 0.0061 (3) | 0.0108 (3) |
O3 | 0.0395 (4) | 0.0544 (5) | 0.0547 (5) | 0.0125 (3) | −0.0065 (3) | 0.0098 (4) |
O4 | 0.0576 (4) | 0.0305 (3) | 0.0367 (3) | 0.0000 (3) | 0.0057 (3) | −0.0021 (3) |
O5 | 0.0451 (4) | 0.0428 (4) | 0.0335 (3) | 0.0128 (3) | 0.0100 (3) | 0.0117 (3) |
O6 | 0.0569 (4) | 0.0413 (4) | 0.0360 (3) | 0.0153 (3) | 0.0133 (3) | 0.0013 (3) |
C1 | 0.0326 (4) | 0.0333 (4) | 0.0292 (3) | 0.0048 (3) | 0.0066 (3) | 0.0038 (3) |
C2 | 0.0298 (4) | 0.0285 (4) | 0.0261 (3) | −0.0009 (3) | 0.0020 (3) | 0.0011 (3) |
C3 | 0.0292 (4) | 0.0281 (4) | 0.0269 (3) | −0.0014 (3) | −0.0002 (3) | 0.0004 (3) |
C4 | 0.0315 (4) | 0.0315 (4) | 0.0257 (3) | 0.0023 (3) | −0.0001 (3) | 0.0008 (3) |
N1 | 0.0305 (3) | 0.0292 (4) | 0.0266 (3) | 0.0036 (3) | 0.0006 (2) | 0.0020 (2) |
N2 | 0.0456 (5) | 0.0480 (5) | 0.0346 (4) | 0.0104 (4) | 0.0100 (3) | 0.0000 (4) |
N3 | 0.0471 (5) | 0.0488 (5) | 0.0331 (4) | 0.0141 (4) | 0.0064 (3) | −0.0019 (4) |
C5 | 0.0311 (4) | 0.0300 (4) | 0.0325 (4) | 0.0013 (3) | 0.0018 (3) | −0.0028 (3) |
C6 | 0.0396 (5) | 0.0367 (5) | 0.0431 (5) | 0.0124 (4) | −0.0028 (4) | −0.0020 (4) |
C7 | 0.0485 (5) | 0.0359 (5) | 0.0398 (5) | 0.0078 (4) | −0.0106 (4) | 0.0039 (4) |
C8 | 0.0483 (5) | 0.0411 (5) | 0.0274 (4) | 0.0037 (4) | −0.0022 (3) | 0.0033 (3) |
C9 | 0.0322 (4) | 0.0317 (4) | 0.0270 (3) | −0.0004 (3) | 0.0004 (3) | −0.0007 (3) |
N4 | 0.0290 (4) | 0.0349 (4) | 0.0485 (4) | 0.0013 (3) | −0.0029 (3) | −0.0015 (3) |
N5 | 0.0403 (5) | 0.0351 (5) | 0.0901 (9) | 0.0016 (4) | −0.0046 (5) | −0.0084 (5) |
N6 | 0.0575 (7) | 0.0332 (5) | 0.0982 (10) | −0.0015 (5) | −0.0145 (6) | 0.0028 (5) |
C10 | 0.0319 (4) | 0.0352 (5) | 0.0508 (5) | 0.0024 (4) | 0.0031 (4) | −0.0024 (4) |
C11 | 0.0376 (5) | 0.0459 (7) | 0.0651 (7) | 0.0093 (5) | −0.0048 (5) | 0.0021 (5) |
C12 | 0.0339 (5) | 0.0639 (8) | 0.0670 (8) | 0.0027 (5) | −0.0123 (5) | −0.0004 (6) |
C13 | 0.0413 (6) | 0.0490 (7) | 0.0661 (8) | −0.0081 (5) | −0.0095 (5) | −0.0043 (5) |
C14 | 0.0388 (5) | 0.0365 (5) | 0.0512 (6) | −0.0026 (4) | −0.0003 (4) | −0.0007 (4) |
O1W | 0.0539 (5) | 0.0414 (5) | 0.0734 (6) | −0.0122 (4) | 0.0114 (4) | −0.0059 (4) |
O1—C2 | 1.4257 (11) | C6—H6A | 0.938 (17) |
O1—H1O1 | 0.901 (16) | C7—C8 | 1.3773 (16) |
O2—C3 | 1.4194 (10) | C7—H7A | 0.984 (15) |
O2—H1O2 | 0.868 (19) | C8—C9 | 1.3937 (13) |
O3—C1 | 1.2418 (12) | C8—H8A | 0.951 (14) |
O4—C1 | 1.2644 (12) | N4—C14 | 1.3591 (14) |
O5—C4 | 1.2643 (10) | N4—C10 | 1.3613 (13) |
O6—C4 | 1.2426 (11) | N4—H1N4 | 0.923 (17) |
C1—C2 | 1.5322 (13) | N5—C10 | 1.3319 (15) |
C2—C3 | 1.5231 (12) | N5—H1N5 | 0.827 (18) |
C2—H2A | 0.962 (11) | N5—H2N5 | 0.888 (17) |
C3—C4 | 1.5318 (12) | N6—C14 | 1.3390 (16) |
C3—H3A | 0.962 (12) | N6—H1N6 | 0.901 (18) |
N1—C9 | 1.3572 (11) | N6—H2N6 | 0.87 (2) |
N1—C5 | 1.3620 (11) | C10—C11 | 1.3930 (16) |
N1—H1N1 | 0.933 (14) | C11—C12 | 1.3747 (19) |
N2—C5 | 1.3443 (12) | C11—H11A | 0.922 (18) |
N2—H1N2 | 0.881 (17) | C12—C13 | 1.379 (2) |
N2—H2N2 | 0.884 (14) | C12—H12A | 0.963 (19) |
N3—C9 | 1.3453 (13) | C13—C14 | 1.3862 (16) |
N3—H1N3 | 0.907 (17) | C13—H13A | 0.959 (17) |
N3—H2N3 | 0.859 (18) | O1W—H1W1 | 0.85 (3) |
C5—C6 | 1.3931 (13) | O1W—H2W1 | 0.89 (2) |
C6—C7 | 1.3790 (15) | ||
C2—O1—H1O1 | 105.3 (10) | C8—C7—C6 | 122.24 (9) |
C3—O2—H1O2 | 108.9 (11) | C8—C7—H7A | 121.3 (8) |
O3—C1—O4 | 124.66 (9) | C6—C7—H7A | 116.4 (8) |
O3—C1—C2 | 118.00 (9) | C7—C8—C9 | 118.34 (9) |
O4—C1—C2 | 117.31 (8) | C7—C8—H8A | 121.2 (9) |
O1—C2—C3 | 110.92 (7) | C9—C8—H8A | 120.4 (9) |
O1—C2—C1 | 113.58 (7) | N3—C9—N1 | 117.68 (8) |
C3—C2—C1 | 112.37 (7) | N3—C9—C8 | 123.52 (9) |
O1—C2—H2A | 106.5 (7) | N1—C9—C8 | 118.79 (8) |
C3—C2—H2A | 107.6 (7) | C14—N4—C10 | 123.92 (9) |
C1—C2—H2A | 105.4 (7) | C14—N4—H1N4 | 120.8 (10) |
O2—C3—C2 | 113.34 (7) | C10—N4—H1N4 | 115.1 (10) |
O2—C3—C4 | 112.54 (7) | C10—N5—H1N5 | 118.6 (12) |
C2—C3—C4 | 109.86 (7) | C10—N5—H2N5 | 119.8 (11) |
O2—C3—H3A | 109.4 (7) | H1N5—N5—H2N5 | 121.5 (16) |
C2—C3—H3A | 106.2 (7) | C14—N6—H1N6 | 120.4 (11) |
C4—C3—H3A | 104.9 (7) | C14—N6—H2N6 | 115.8 (13) |
O6—C4—O5 | 124.53 (9) | H1N6—N6—H2N6 | 123.2 (17) |
O6—C4—C3 | 119.58 (8) | N5—C10—N4 | 116.98 (10) |
O5—C4—C3 | 115.86 (8) | N5—C10—C11 | 124.84 (11) |
C9—N1—C5 | 123.51 (8) | N4—C10—C11 | 118.18 (10) |
C9—N1—H1N1 | 117.5 (8) | C12—C11—C10 | 118.51 (11) |
C5—N1—H1N1 | 118.9 (8) | C12—C11—H11A | 123.0 (11) |
C5—N2—H1N2 | 118.3 (11) | C10—C11—H11A | 118.4 (11) |
C5—N2—H2N2 | 117.2 (9) | C11—C12—C13 | 122.37 (11) |
H1N2—N2—H2N2 | 117.8 (13) | C11—C12—H12A | 116.9 (11) |
C9—N3—H1N3 | 118.8 (10) | C13—C12—H12A | 120.7 (11) |
C9—N3—H2N3 | 116.2 (11) | C12—C13—C14 | 118.61 (11) |
H1N3—N3—H2N3 | 118.1 (15) | C12—C13—H13A | 124.2 (10) |
N2—C5—N1 | 117.16 (8) | C14—C13—H13A | 117.1 (10) |
N2—C5—C6 | 124.46 (9) | N6—C14—N4 | 116.97 (10) |
N1—C5—C6 | 118.38 (8) | N6—C14—C13 | 124.67 (11) |
C7—C6—C5 | 118.65 (9) | N4—C14—C13 | 118.36 (11) |
C7—C6—H6A | 119.9 (10) | H1W1—O1W—H2W1 | 106 (2) |
C5—C6—H6A | 121.5 (10) | ||
O3—C1—C2—O1 | 7.58 (11) | C5—C6—C7—C8 | −1.59 (17) |
O4—C1—C2—O1 | −174.21 (7) | C6—C7—C8—C9 | −0.26 (17) |
O3—C1—C2—C3 | 134.52 (9) | C5—N1—C9—N3 | 177.76 (9) |
O4—C1—C2—C3 | −47.27 (10) | C5—N1—C9—C8 | −3.54 (14) |
O1—C2—C3—O2 | 65.36 (10) | C7—C8—C9—N3 | −178.63 (10) |
C1—C2—C3—O2 | −62.99 (9) | C7—C8—C9—N1 | 2.75 (15) |
O1—C2—C3—C4 | −61.50 (9) | C14—N4—C10—N5 | −178.83 (11) |
C1—C2—C3—C4 | 170.15 (7) | C14—N4—C10—C11 | 1.42 (17) |
O2—C3—C4—O6 | −2.16 (12) | N5—C10—C11—C12 | 177.88 (13) |
C2—C3—C4—O6 | 125.14 (9) | N4—C10—C11—C12 | −2.39 (19) |
O2—C3—C4—O5 | 176.12 (8) | C10—C11—C12—C13 | 1.4 (2) |
C2—C3—C4—O5 | −56.57 (10) | C11—C12—C13—C14 | 0.6 (2) |
C9—N1—C5—N2 | −178.91 (9) | C10—N4—C14—N6 | −179.17 (12) |
C9—N1—C5—C6 | 1.66 (14) | C10—N4—C14—C13 | 0.63 (17) |
N2—C5—C6—C7 | −178.45 (10) | C12—C13—C14—N6 | 178.15 (14) |
N1—C5—C6—C7 | 0.93 (15) | C12—C13—C14—N4 | −1.64 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O4i | 0.900 (16) | 1.840 (16) | 2.7315 (10) | 170.9 (15) |
O2—H1O2···O4i | 0.871 (17) | 1.957 (17) | 2.8260 (11) | 175.6 (15) |
N1—H1N1···O5 | 0.933 (13) | 1.740 (13) | 2.6660 (11) | 171.4 (13) |
N2—H1N2···O2ii | 0.882 (17) | 2.369 (17) | 3.2254 (13) | 163.7 (14) |
N2—H1N2···O6ii | 0.882 (17) | 2.461 (17) | 3.0531 (13) | 125.0 (13) |
N2—H2N2···O6 | 0.884 (14) | 2.048 (14) | 2.9306 (13) | 176.7 (12) |
N3—H1N3···O5 | 0.908 (16) | 2.552 (16) | 3.2431 (12) | 133.4 (13) |
N3—H1N3···O4iii | 0.908 (16) | 2.519 (17) | 3.1842 (13) | 130.5 (13) |
N3—H2N3···O6iv | 0.860 (16) | 2.122 (16) | 2.9499 (12) | 161.3 (16) |
N4—H1N4···O3v | 0.924 (17) | 1.810 (17) | 2.7294 (12) | 172.5 (15) |
N5—H1N5···O1Wvi | 0.827 (19) | 2.114 (19) | 2.9265 (15) | 167.7 (15) |
N5—H2N5···O1v | 0.888 (17) | 2.243 (17) | 3.0557 (14) | 152.0 (14) |
N5—H2N5···O3v | 0.888 (17) | 2.503 (16) | 3.2154 (15) | 137.8 (13) |
N6—H1N6···O1Wvii | 0.901 (17) | 2.127 (17) | 3.0131 (18) | 167.5 (14) |
N6—H2N6···O1 | 0.87 (2) | 2.189 (19) | 2.9851 (15) | 152 (2) |
O1W—H1W1···O3iii | 0.85 (2) | 2.37 (3) | 2.9371 (13) | 125 (2) |
O1W—H1W1···O4iii | 0.85 (2) | 2.42 (2) | 3.1642 (13) | 146 (2) |
O1W—H2W1···O5 | 0.89 (2) | 1.93 (2) | 2.8153 (13) | 175 (2) |
C2—H2A···O3iii | 0.963 (11) | 2.490 (11) | 3.3232 (12) | 144.8 (9) |
Symmetry codes: (i) x, −y+3/2, z−1/2; (ii) −x+1, −y+1, −z+1; (iii) x, −y+3/2, z+1/2; (iv) x, y, z+1; (v) −x, y−1/2, −z+1/2; (vi) x, −y+1/2, z−1/2; (vii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | 2C5H8N3+·C4H4O62−·H2O |
Mr | 386.38 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 14.4722 (2), 15.7270 (2), 7.8419 (1) |
β (°) | 96.916 (1) |
V (Å3) | 1771.86 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.44 × 0.33 × 0.26 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.950, 0.970 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 55803, 8384, 5761 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.829 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.137, 1.04 |
No. of reflections | 8384 |
No. of parameters | 332 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.33, −0.24 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O4i | 0.900 (16) | 1.840 (16) | 2.7315 (10) | 170.9 (15) |
O2—H1O2···O4i | 0.871 (17) | 1.957 (17) | 2.8260 (11) | 175.6 (15) |
N1—H1N1···O5 | 0.933 (13) | 1.740 (13) | 2.6660 (11) | 171.4 (13) |
N2—H1N2···O2ii | 0.882 (17) | 2.369 (17) | 3.2254 (13) | 163.7 (14) |
N2—H1N2···O6ii | 0.882 (17) | 2.461 (17) | 3.0531 (13) | 125.0 (13) |
N2—H2N2···O6 | 0.884 (14) | 2.048 (14) | 2.9306 (13) | 176.7 (12) |
N3—H1N3···O5 | 0.908 (16) | 2.552 (16) | 3.2431 (12) | 133.4 (13) |
N3—H1N3···O4iii | 0.908 (16) | 2.519 (17) | 3.1842 (13) | 130.5 (13) |
N3—H2N3···O6iv | 0.860 (16) | 2.122 (16) | 2.9499 (12) | 161.3 (16) |
N4—H1N4···O3v | 0.924 (17) | 1.810 (17) | 2.7294 (12) | 172.5 (15) |
N5—H1N5···O1Wvi | 0.827 (19) | 2.114 (19) | 2.9265 (15) | 167.7 (15) |
N5—H2N5···O1v | 0.888 (17) | 2.243 (17) | 3.0557 (14) | 152.0 (14) |
N5—H2N5···O3v | 0.888 (17) | 2.503 (16) | 3.2154 (15) | 137.8 (13) |
N6—H1N6···O1Wvii | 0.901 (17) | 2.127 (17) | 3.0131 (18) | 167.5 (14) |
N6—H2N6···O1 | 0.87 (2) | 2.189 (19) | 2.9851 (15) | 152 (2) |
O1W—H1W1···O3iii | 0.85 (2) | 2.37 (3) | 2.9371 (13) | 125 (2) |
O1W—H1W1···O4iii | 0.85 (2) | 2.42 (2) | 3.1642 (13) | 146 (2) |
O1W—H2W1···O5 | 0.89 (2) | 1.93 (2) | 2.8153 (13) | 175 (2) |
C2—H2A···O3iii | 0.963 (11) | 2.490 (11) | 3.3232 (12) | 144.8 (9) |
Symmetry codes: (i) x, −y+3/2, z−1/2; (ii) −x+1, −y+1, −z+1; (iii) x, −y+3/2, z+1/2; (iv) x, y, z+1; (v) −x, y−1/2, −z+1/2; (vi) x, −y+1/2, z−1/2; (vii) −x, −y+1, −z+1. |
The asymmetric unit of the title compound, (I) (Fig. 1), comprises of two 2,6-diaminopyridinium cations, a tartrate dianion and a water molecule. Two intermolecular protons transfer from the carboxylic groups of tartaric acid to atoms N1 & N4 of the 2,6-diaminopyridine moiety has resulted in the formation of ions. The protonated N1 atom and the N2 atom of the amino group are hydrogen bonded to the carboxyl group (atoms O5 & O6) via a pair of N—H···O hydrogen bonds forming an R22(8) ring motif (Fig. 1, Bernstein et al., 1995). The two 2,6-diaminopyridinium cations (N1–N3/C5–C9) and (N4–N6/C10–C14) are essentially planar, with maximum devations of 0.023 (1) and 0.026 (1) Å, respectively, for atoms C6 and C11. Comparing with the unprotonated structure (De cires-Mejias et al., 2004), protonation of atoms N1 & N4 have widened the C—N—C angles to 123.51 (8) and 123.92 (9)°, respectively, for angles of C5—N1—C9 and C10—N4—C14. The bond lengths (Allen et al., 1987) and angles observed are within normal ranges and are consistent with those related structures (Al-Dajani, Abdallah et al., 2009; Al-Dajani, Salhin et al., 2009).
The crystal structure of (I) is mainly stabilized by a network of N—H···O and C—H···O hydrogen bonds. Each N atom in the cations participates in intermolecular hydrogen bonds. In the crystal structure (Fig. 2), the tartrate anions and water molecules are linked into chains along the c axis by intermolecular O1—H1O1···O4, O2—H1O2···O4, O1W—H1W1···O3, O1W—H1W1···O4, O1W—H2W1···O5 and C2—H2A···O3 hydrogen bonds (Table 1). The 2,6-diaminopyridinium cations further linked the anions and water molecules into a three-dimensional extended structure by a network of N—H···O hydrogen bonds (Table 1). The crystal structure is further stabilized by weak intermolecular π–π interactions [Cg1···Cg1 = 3.6950 (6) Å; Cg1 is the centroid of the N1/C5–C9 pyridine ring].