Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810033118/hb5597sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810033118/hb5597Isup2.hkl |
CCDC reference: 792471
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.004 Å
- R factor = 0.056
- wR factor = 0.141
- Data-to-parameter ratio = 9.7
checkCIF/PLATON results
No syntax errors found
Alert level C SHFSU01_ALERT_2_C Test not performed. _refine_ls_shift/su_max and _refine_ls_shift/esd_max not present. Absolute value of the parameter shift to su ratio given 0.001 PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 3
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.50 From the CIF: _reflns_number_total 1056 Count of symmetry unique reflns 1060 Completeness (_total/calc) 99.62% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT371_ALERT_2_G Long C(sp2)-C(sp1) Bond C9 - C10 ... 1.45 Ang.
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A hot methanol solution (20 ml) of quinoline-2-carbonitrile (39 mg, Aldrich) was warmed over a magnetic stirrer hotplate for a few minutes. The resulting solution was allowed to cool slowly to room temperature. Colourless plates of (I) appeared after a few days.
All H atoms were positioned geometrically with the bond length of C–H being 0.93 Å and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C). In the absence of significant anomalous dispersion, 616 Friedel pairs were merged for the final refinement.
Heterocyclic molecules containing cyano group are useful as drug intermediates. Syntheses of the quinoline derivatives were discussed earlier (Sasaki et al., 1998; Reux et al., 2009). Recently, we have synthesized a number of quinoline compounds to investigate the hydrogen bonding patterns in these compounds (Loh et al., 2009; 2010). Herein we report the crystal structure of quinoline-2-carbonitrile.
In the title compound, Fig. 1, the molecule is almost planar with an r.m.s. deviation of 0.014 Å. The dihedral angle between the benzene (C3–C8) and pyridine (C1–C3/N1/C8/C9) rings is 1.28 (16)°. The bond lengths (Allen et al., 1987) and angles in the title compound are within normal ranges and comparable to the related structure of quinoxaline-2-carbonitrile (Fun et al., 2010).
In the crystal packing, Fig. 2, the molecules are stacked along the a axis by way of weak aromatic π–π stacking interactions between the centroid of the benzene (Cg1) and the centroid of the pyridine (Cg2) rings of adjacent molecules [Cg1···Cg2 separation = 3.7943 (19) Å]. There is no significant hydrogen bond observed in this compound.
For the biological activity and syntheses of quinoline derivatives, see: Sasaki et al. (1998); Reux et al. (2009). For related structures, see: Fun et al. (2010); Loh et al. (2009, 2010). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986). For bond-length data, see: Allen et al. (1987).
Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Fig. 1. The molecular structure of (I) showing 50% probability displacement ellipsoids for non-H atoms. | |
Fig. 2. The crystal structure of (I), viewed along the a axis. |
C10H6N2 | F(000) = 320 |
Mr = 154.17 | Dx = 1.338 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 930 reflections |
a = 3.8497 (2) Å | θ = 3.7–27.4° |
b = 9.9559 (4) Å | µ = 0.08 mm−1 |
c = 19.9639 (13) Å | T = 100 K |
V = 765.16 (7) Å3 | Plate, colourless |
Z = 4 | 0.36 × 0.18 × 0.03 mm |
Bruker SMART APEXII CCD diffractometer | 1056 independent reflections |
Radiation source: fine-focus sealed tube | 838 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.059 |
φ and ω scans | θmax = 27.5°, θmin = 3.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −4→4 |
Tmin = 0.971, Tmax = 0.997 | k = −12→12 |
4086 measured reflections | l = −25→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0827P)2] where P = (Fo2 + 2Fc2)/3 |
1056 reflections | (Δ/σ)max < 0.001 |
109 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
C10H6N2 | V = 765.16 (7) Å3 |
Mr = 154.17 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 3.8497 (2) Å | µ = 0.08 mm−1 |
b = 9.9559 (4) Å | T = 100 K |
c = 19.9639 (13) Å | 0.36 × 0.18 × 0.03 mm |
Bruker SMART APEXII CCD diffractometer | 1056 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 838 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.997 | Rint = 0.059 |
4086 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.31 e Å−3 |
1056 reflections | Δρmin = −0.24 e Å−3 |
109 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.7386 (8) | 0.5083 (2) | 0.20498 (14) | 0.0185 (6) | |
N2 | 0.3930 (9) | 0.4374 (2) | 0.35822 (16) | 0.0296 (7) | |
C1 | 0.7983 (9) | 0.2683 (3) | 0.22614 (16) | 0.0193 (7) | |
H1A | 0.7552 | 0.1964 | 0.2547 | 0.023* | |
C2 | 0.9617 (9) | 0.2502 (3) | 0.16647 (16) | 0.0192 (7) | |
H2A | 1.0368 | 0.1649 | 0.1541 | 0.023* | |
C3 | 1.0178 (9) | 0.3604 (3) | 0.12314 (16) | 0.0174 (7) | |
C4 | 1.1815 (8) | 0.3487 (3) | 0.06064 (16) | 0.0201 (7) | |
H4A | 1.2662 | 0.2658 | 0.0468 | 0.024* | |
C5 | 1.2177 (9) | 0.4589 (3) | 0.01965 (18) | 0.0224 (7) | |
H5A | 1.3204 | 0.4498 | −0.0223 | 0.027* | |
C6 | 1.0989 (8) | 0.5855 (3) | 0.04129 (17) | 0.0239 (8) | |
H6A | 1.1257 | 0.6595 | 0.0133 | 0.029* | |
C7 | 0.9466 (9) | 0.6018 (3) | 0.10188 (17) | 0.0213 (7) | |
H7A | 0.8736 | 0.6866 | 0.1154 | 0.026* | |
C8 | 0.8981 (8) | 0.4894 (3) | 0.14492 (17) | 0.0162 (7) | |
C9 | 0.6962 (8) | 0.4002 (3) | 0.24322 (16) | 0.0169 (7) | |
C10 | 0.5263 (9) | 0.4229 (3) | 0.30714 (17) | 0.0196 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0149 (13) | 0.0120 (10) | 0.0284 (15) | −0.0014 (10) | −0.0013 (13) | −0.0012 (10) |
N2 | 0.0336 (17) | 0.0199 (13) | 0.0353 (17) | 0.0000 (12) | 0.0055 (16) | −0.0013 (13) |
C1 | 0.0146 (16) | 0.0128 (12) | 0.0306 (18) | 0.0016 (12) | −0.0030 (15) | 0.0009 (12) |
C2 | 0.0155 (16) | 0.0113 (12) | 0.0307 (18) | 0.0009 (12) | −0.0020 (15) | −0.0027 (12) |
C3 | 0.0130 (15) | 0.0150 (13) | 0.0243 (17) | 0.0006 (11) | −0.0063 (14) | −0.0028 (12) |
C4 | 0.0134 (16) | 0.0184 (14) | 0.0286 (19) | 0.0016 (12) | −0.0010 (15) | −0.0060 (13) |
C5 | 0.0164 (16) | 0.0251 (15) | 0.0256 (17) | −0.0004 (14) | −0.0003 (15) | −0.0006 (13) |
C6 | 0.0218 (17) | 0.0167 (13) | 0.0333 (19) | −0.0009 (13) | −0.0003 (16) | 0.0053 (14) |
C7 | 0.0202 (17) | 0.0128 (13) | 0.0311 (19) | −0.0003 (13) | −0.0039 (16) | 0.0021 (12) |
C8 | 0.0124 (15) | 0.0111 (12) | 0.0249 (16) | −0.0016 (11) | −0.0027 (14) | −0.0033 (12) |
C9 | 0.0130 (14) | 0.0130 (12) | 0.0247 (17) | −0.0019 (12) | −0.0035 (14) | −0.0018 (11) |
C10 | 0.0186 (17) | 0.0098 (12) | 0.0306 (19) | −0.0019 (12) | −0.0015 (15) | 0.0008 (12) |
N1—C9 | 1.329 (4) | C4—C5 | 1.376 (4) |
N1—C8 | 1.360 (4) | C4—H4A | 0.9300 |
N2—C10 | 1.151 (4) | C5—C6 | 1.409 (4) |
C1—C2 | 1.359 (4) | C5—H5A | 0.9300 |
C1—C9 | 1.413 (4) | C6—C7 | 1.354 (4) |
C1—H1A | 0.9300 | C6—H6A | 0.9300 |
C2—C3 | 1.414 (4) | C7—C8 | 1.424 (4) |
C2—H2A | 0.9300 | C7—H7A | 0.9300 |
C3—C4 | 1.402 (4) | C9—C10 | 1.452 (4) |
C3—C8 | 1.432 (4) | ||
C9—N1—C8 | 116.7 (2) | C6—C5—H5A | 120.1 |
C2—C1—C9 | 117.6 (3) | C7—C6—C5 | 121.5 (3) |
C2—C1—H1A | 121.2 | C7—C6—H6A | 119.3 |
C9—C1—H1A | 121.2 | C5—C6—H6A | 119.3 |
C1—C2—C3 | 120.3 (3) | C6—C7—C8 | 120.1 (3) |
C1—C2—H2A | 119.9 | C6—C7—H7A | 120.0 |
C3—C2—H2A | 119.9 | C8—C7—H7A | 120.0 |
C4—C3—C2 | 123.3 (2) | N1—C8—C7 | 118.8 (2) |
C4—C3—C8 | 119.3 (3) | N1—C8—C3 | 122.5 (3) |
C2—C3—C8 | 117.4 (3) | C7—C8—C3 | 118.7 (3) |
C5—C4—C3 | 120.6 (3) | N1—C9—C1 | 125.4 (3) |
C5—C4—H4A | 119.7 | N1—C9—C10 | 115.7 (2) |
C3—C4—H4A | 119.7 | C1—C9—C10 | 118.8 (3) |
C4—C5—C6 | 119.9 (3) | N2—C10—C9 | 178.2 (3) |
C4—C5—H5A | 120.1 | ||
C9—C1—C2—C3 | −1.4 (4) | C6—C7—C8—N1 | −178.8 (3) |
C1—C2—C3—C4 | −179.4 (3) | C6—C7—C8—C3 | 0.9 (5) |
C1—C2—C3—C8 | 0.3 (4) | C4—C3—C8—N1 | −179.7 (3) |
C2—C3—C4—C5 | 177.7 (3) | C2—C3—C8—N1 | 0.6 (4) |
C8—C3—C4—C5 | −2.0 (4) | C4—C3—C8—C7 | 0.6 (4) |
C3—C4—C5—C6 | 1.9 (5) | C2—C3—C8—C7 | −179.1 (3) |
C4—C5—C6—C7 | −0.4 (5) | C8—N1—C9—C1 | −1.0 (5) |
C5—C6—C7—C8 | −1.0 (5) | C8—N1—C9—C10 | 179.8 (3) |
C9—N1—C8—C7 | 179.4 (3) | C2—C1—C9—N1 | 1.8 (5) |
C9—N1—C8—C3 | −0.3 (4) | C2—C1—C9—C10 | −179.0 (3) |
Experimental details
Crystal data | |
Chemical formula | C10H6N2 |
Mr | 154.17 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 3.8497 (2), 9.9559 (4), 19.9639 (13) |
V (Å3) | 765.16 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.36 × 0.18 × 0.03 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.971, 0.997 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4086, 1056, 838 |
Rint | 0.059 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.141, 1.09 |
No. of reflections | 1056 |
No. of parameters | 109 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.24 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Heterocyclic molecules containing cyano group are useful as drug intermediates. Syntheses of the quinoline derivatives were discussed earlier (Sasaki et al., 1998; Reux et al., 2009). Recently, we have synthesized a number of quinoline compounds to investigate the hydrogen bonding patterns in these compounds (Loh et al., 2009; 2010). Herein we report the crystal structure of quinoline-2-carbonitrile.
In the title compound, Fig. 1, the molecule is almost planar with an r.m.s. deviation of 0.014 Å. The dihedral angle between the benzene (C3–C8) and pyridine (C1–C3/N1/C8/C9) rings is 1.28 (16)°. The bond lengths (Allen et al., 1987) and angles in the title compound are within normal ranges and comparable to the related structure of quinoxaline-2-carbonitrile (Fun et al., 2010).
In the crystal packing, Fig. 2, the molecules are stacked along the a axis by way of weak aromatic π–π stacking interactions between the centroid of the benzene (Cg1) and the centroid of the pyridine (Cg2) rings of adjacent molecules [Cg1···Cg2 separation = 3.7943 (19) Å]. There is no significant hydrogen bond observed in this compound.