


Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810042340/hb5645sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536810042340/hb5645Isup2.hkl |
CCDC reference: 802958
Key indicators
- Single-crystal X-ray study
- T = 292 K
- Mean
(C-C) = 0.005 Å
- R factor = 0.040
- wR factor = 0.100
- Data-to-parameter ratio = 13.1
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT232_ALERT_2_B Hirshfeld Test Diff (M-X) Zn1 -- O4_a .. 10.77 su
Alert level C CRYSC01_ALERT_1_C The word below has not been recognised as a standard identifier. amaranth CRYSC01_ALERT_1_C No recognised colour has been given for crystal colour. PLAT355_ALERT_3_C Long O-H Bond (0.82A) O5 - H5B ... 1.01 Ang. PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 1 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 11 PLAT194_ALERT_1_C Missing _cell_measurement_reflns_used datum .... ? PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 32
Alert level G PLAT232_ALERT_2_G Hirshfeld Test Diff (M-X) Zn1 -- O3_a .. 10.59 su PLAT333_ALERT_2_G Check Large Av C6-Ring C-C Dist. C4 -C14 1.43 Ang. PLAT063_ALERT_4_G Crystal Size Likely too Large for Beam Size .... 0.78 mm PLAT154_ALERT_1_G The su's on the Cell Angles are Equal (x 10000) 500 Deg. PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 79 ZN1 -C19 -C18 -C17 -133.60 1.60 1.665 1.555 1.555 1.555 PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 3 PLAT764_ALERT_4_G Overcomplete CIF Bond List Detected (Rep/Expd) . 1.11 Ratio PLAT804_ALERT_5_G ARU-Pack Problem in PLATON Analysis ............ 2 Times
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 8 ALERT level G = General alerts; check 4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
The pyphen ligand was synthesized according to the literature method of Dickeson & Summers (1970). A mixture of ZnCl2 (0.3 mmol), pyphen (0.1 mmol) and glutaric acid (0.3 mmol) in distilled water (30 ml) was stirred thoroughly for 1 h at ambient temperature. The pH was adjusted to 7.5 with aqueous NaOH solution. The suspension was then sealed in a Teflon-lined stainless steel reaction vessel (40 ml). The reaction was performed under autogeneous pressure and static conditions in an oven at 443 K for 4.5 d. The vessel was then cooled slowly inside the oven to 298 K at a rate of 5 K h-1 before opening: amaranth (red) blocks of (I) were collected.
All H atoms on C atoms were generated geometrically and refined as riding atoms with C—H= 0.93Å and Uiso(H)= 1.2 times Ueq(C).
The 1,10-phenanthroline (phen) ligand and its derivatives are important ligands with numerous uses in the construction of metal-organic complexes.Supramolecular architectures baswd on the phen derivative pyrazino[2,3-f][1,10]phenanthroline(PyPhen) molecule have considerably less attention (Li et al.,2006) A s part of our ongoing studies in this area (Fang-Wei & Mei, 2007). We selected glutaric acid (C5H6O42-) to act as a metal-metal linker in its deprotonated form and L as a secondary ligand, generating the title compound, [Zn(C14H8N4)(C5H6O4)(H2O).H2O], a new coordinationg polymer, which is reported here. In compound (I), the ZnII atom of unit is surrounded by two N atoms derived from the bidentate PyPhen ligand, three O atoms from two glutaric acid dianions (one monodentate, one bidentate) and one water molecule (Figure 1, Table 1) a distorted octahedral cis-ZnN2O4arrangement is formed. Neighboring ZnII atoms are bridged by the centrosymmetric glutaric acid ligands forming a one-dimensional chain structure (Fig.2). In the crystal structure, adjacent chains are connected through π-π interactions between PyPhen and PyPhen ligands with a minimum centroid -centroid stacking distance of 3.372 Å. O—H···O hydrogen bonds involving the water molecules and carboxylate O atom acceptors (Table 2) complete the structure.
For the synthesis of the ligand, see: Dickeson & Summers (1970). For related structures, see: Fang-Wei & Mei (2007); Li et al. (2006).
Data collection: SMART (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT (Bruker, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
[Zn(C5H6O4)(C14H8N4)(H2O)]·H2O | V = 932.5 (8) Å3 |
Mr = 463.74 | Z = 2 |
Triclinic, P1 | F(000) = 476 |
Hall symbol: -P 1 | Dx = 1.652 Mg m−3 |
a = 6.397 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.384 (5) Å | θ = 2.0–26.3° |
c = 16.409 (8) Å | µ = 1.37 mm−1 |
α = 98.067 (5)° | T = 292 K |
β = 100.859 (5)° | Block, amaranth |
γ = 101.274 (5)° | 0.78 × 0.52 × 0.36 mm |
Bruker SMART CCD diffractometer | 3702 independent reflections |
Radiation source: fine-focus sealed tube | 2929 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.062 |
Detector resolution: 0 pixels mm-1 | θmax = 26.1°, θmin = 2.3° |
ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | k = −11→11 |
Tmin = 0.432, Tmax = 0.611 | l = −20→20 |
8019 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: constr |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.98 | w = 1/[σ2(Fo2) + (0.0464P)2] where P = (Fo2 + 2Fc2)/3 |
3702 reflections | (Δ/σ)max = 0.001 |
283 parameters | Δρmax = 0.86 e Å−3 |
0 restraints | Δρmin = −0.59 e Å−3 |
[Zn(C5H6O4)(C14H8N4)(H2O)]·H2O | γ = 101.274 (5)° |
Mr = 463.74 | V = 932.5 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.397 (3) Å | Mo Kα radiation |
b = 9.384 (5) Å | µ = 1.37 mm−1 |
c = 16.409 (8) Å | T = 292 K |
α = 98.067 (5)° | 0.78 × 0.52 × 0.36 mm |
β = 100.859 (5)° |
Bruker SMART CCD diffractometer | 3702 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | 2929 reflections with I > 2σ(I) |
Tmin = 0.432, Tmax = 0.611 | Rint = 0.062 |
8019 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.98 | Δρmax = 0.86 e Å−3 |
3702 reflections | Δρmin = −0.59 e Å−3 |
283 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.71632 (5) | 0.09770 (4) | 0.66833 (2) | 0.02738 (13) | |
O5 | 0.4196 (3) | 0.1252 (2) | 0.59395 (14) | 0.0354 (5) | |
H5A | 0.3260 | 0.0479 | 0.5847 | 0.053* | |
O3 | 1.5203 (3) | 0.8764 (2) | 0.69454 (14) | 0.0384 (5) | |
O4 | 1.6651 (3) | 0.8894 (2) | 0.58459 (13) | 0.0367 (5) | |
OW1 | 0.9119 (4) | 0.1180 (3) | 0.44343 (17) | 0.0424 (6) | |
N2 | 0.9708 (4) | 0.0659 (3) | 0.76912 (15) | 0.0270 (5) | |
N1 | 0.6579 (4) | 0.2190 (3) | 0.77760 (15) | 0.0271 (5) | |
N3 | 0.9142 (5) | 0.3624 (3) | 1.07957 (17) | 0.0425 (7) | |
C4 | 1.1058 (5) | 0.1251 (3) | 0.92035 (18) | 0.0290 (7) | |
N4 | 1.2336 (5) | 0.1937 (3) | 1.07170 (17) | 0.0410 (7) | |
C14 | 0.9630 (4) | 0.1335 (3) | 0.84604 (18) | 0.0249 (6) | |
C8 | 0.9326 (5) | 0.2869 (3) | 1.00470 (19) | 0.0325 (7) | |
C13 | 0.7948 (5) | 0.2178 (3) | 0.85096 (18) | 0.0259 (6) | |
C12 | 0.5054 (5) | 0.2965 (3) | 0.7799 (2) | 0.0340 (7) | |
H12A | 0.4108 | 0.2974 | 0.7295 | 0.041* | |
C9 | 0.7811 (5) | 0.2942 (3) | 0.92828 (19) | 0.0303 (7) | |
C5 | 1.0920 (5) | 0.2042 (3) | 1.00158 (18) | 0.0327 (7) | |
C16 | 1.1651 (5) | 0.4264 (3) | 0.59565 (19) | 0.0343 (7) | |
H16A | 1.0786 | 0.4284 | 0.5407 | 0.041* | |
H16B | 1.2742 | 0.3709 | 0.5865 | 0.041* | |
C19 | 1.5487 (5) | 0.8164 (3) | 0.6267 (2) | 0.0323 (7) | |
C15 | 1.0173 (5) | 0.3451 (3) | 0.6441 (2) | 0.0352 (7) | |
C10 | 0.6172 (5) | 0.3738 (3) | 0.9281 (2) | 0.0383 (8) | |
H10A | 0.6016 | 0.4249 | 0.9786 | 0.046* | |
C2 | 1.2673 (5) | −0.0301 (4) | 0.8352 (2) | 0.0376 (8) | |
H2A | 1.3682 | −0.0879 | 0.8294 | 0.045* | |
C17 | 1.2817 (6) | 0.5833 (3) | 0.6374 (2) | 0.0400 (8) | |
H17A | 1.3581 | 0.5832 | 0.6944 | 0.048* | |
H17B | 1.1738 | 0.6422 | 0.6414 | 0.048* | |
C3 | 1.2606 (5) | 0.0399 (3) | 0.9126 (2) | 0.0350 (7) | |
H3B | 1.3586 | 0.0314 | 0.9604 | 0.042* | |
C11 | 0.4807 (5) | 0.3765 (4) | 0.8541 (2) | 0.0408 (8) | |
H11A | 0.3733 | 0.4306 | 0.8532 | 0.049* | |
C18 | 1.4442 (5) | 0.6551 (3) | 0.5904 (2) | 0.0391 (8) | |
H18A | 1.5587 | 0.6008 | 0.5907 | 0.047* | |
H18B | 1.3701 | 0.6468 | 0.5321 | 0.047* | |
C1 | 1.1200 (5) | −0.0139 (3) | 0.7642 (2) | 0.0331 (7) | |
H1A | 1.1268 | −0.0610 | 0.7113 | 0.040* | |
C7 | 1.0537 (6) | 0.3505 (4) | 1.1468 (2) | 0.0487 (9) | |
H7A | 1.0475 | 0.3999 | 1.1992 | 0.058* | |
C6 | 1.2114 (6) | 0.2665 (4) | 1.1429 (2) | 0.0490 (10) | |
H6A | 1.3045 | 0.2621 | 1.1929 | 0.059* | |
O2 | 0.8998 (3) | 0.2189 (2) | 0.60661 (13) | 0.0366 (5) | |
O1 | 1.0269 (5) | 0.3952 (3) | 0.71797 (17) | 0.0684 (9) | |
HWBA | 0.923 (6) | 0.152 (4) | 0.492 (2) | 0.044 (12)* | |
H5B | 0.432 (6) | 0.129 (4) | 0.534 (2) | 0.068 (12)* | |
HWA1 | 1.048 (6) | 0.128 (4) | 0.446 (2) | 0.047 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0268 (2) | 0.0244 (2) | 0.0289 (2) | 0.00223 (14) | 0.00547 (14) | 0.00410 (14) |
O5 | 0.0308 (12) | 0.0365 (13) | 0.0356 (13) | 0.0039 (10) | 0.0020 (10) | 0.0083 (10) |
O3 | 0.0386 (13) | 0.0318 (12) | 0.0401 (13) | 0.0035 (10) | 0.0087 (11) | −0.0027 (10) |
O4 | 0.0349 (12) | 0.0303 (12) | 0.0446 (13) | −0.0004 (10) | 0.0136 (11) | 0.0108 (10) |
OW1 | 0.0350 (15) | 0.0536 (16) | 0.0338 (15) | 0.0065 (12) | 0.0050 (12) | 0.0011 (12) |
N2 | 0.0261 (13) | 0.0256 (13) | 0.0289 (14) | 0.0040 (11) | 0.0091 (11) | 0.0031 (11) |
N1 | 0.0236 (13) | 0.0245 (13) | 0.0328 (14) | 0.0042 (10) | 0.0061 (11) | 0.0065 (11) |
N3 | 0.0527 (18) | 0.0371 (16) | 0.0354 (16) | 0.0053 (14) | 0.0122 (14) | 0.0025 (13) |
C4 | 0.0263 (16) | 0.0296 (16) | 0.0292 (16) | 0.0021 (13) | 0.0052 (13) | 0.0058 (13) |
N4 | 0.0421 (17) | 0.0427 (17) | 0.0339 (16) | 0.0041 (13) | 0.0016 (13) | 0.0101 (13) |
C14 | 0.0228 (15) | 0.0236 (15) | 0.0274 (15) | 0.0014 (12) | 0.0060 (12) | 0.0059 (12) |
C8 | 0.0378 (18) | 0.0279 (16) | 0.0291 (17) | 0.0018 (14) | 0.0090 (14) | 0.0025 (14) |
C13 | 0.0260 (15) | 0.0217 (15) | 0.0292 (16) | 0.0019 (12) | 0.0072 (13) | 0.0053 (13) |
C12 | 0.0324 (17) | 0.0325 (17) | 0.0392 (18) | 0.0091 (14) | 0.0075 (14) | 0.0119 (15) |
C9 | 0.0323 (17) | 0.0264 (16) | 0.0324 (17) | 0.0042 (13) | 0.0108 (14) | 0.0044 (13) |
C5 | 0.0352 (18) | 0.0326 (17) | 0.0276 (16) | 0.0006 (14) | 0.0060 (14) | 0.0078 (14) |
C16 | 0.0361 (18) | 0.0279 (16) | 0.0365 (18) | 0.0015 (14) | 0.0083 (14) | 0.0057 (14) |
C19 | 0.0267 (16) | 0.0268 (16) | 0.0419 (19) | 0.0029 (13) | 0.0059 (14) | 0.0084 (15) |
C15 | 0.0403 (19) | 0.0304 (18) | 0.0350 (19) | 0.0052 (15) | 0.0127 (15) | 0.0048 (15) |
C10 | 0.0413 (19) | 0.0342 (18) | 0.0414 (19) | 0.0124 (15) | 0.0142 (16) | 0.0013 (15) |
C2 | 0.0313 (17) | 0.0433 (19) | 0.046 (2) | 0.0154 (15) | 0.0149 (15) | 0.0145 (16) |
C17 | 0.049 (2) | 0.0263 (17) | 0.0423 (19) | −0.0011 (15) | 0.0166 (17) | 0.0046 (15) |
C3 | 0.0296 (17) | 0.0410 (19) | 0.0364 (18) | 0.0103 (15) | 0.0042 (14) | 0.0142 (15) |
C11 | 0.0358 (19) | 0.0358 (19) | 0.054 (2) | 0.0137 (16) | 0.0122 (17) | 0.0087 (17) |
C18 | 0.0419 (19) | 0.0254 (17) | 0.047 (2) | −0.0010 (15) | 0.0146 (16) | 0.0032 (15) |
C1 | 0.0315 (17) | 0.0321 (17) | 0.0377 (18) | 0.0086 (14) | 0.0129 (14) | 0.0045 (14) |
C7 | 0.066 (3) | 0.044 (2) | 0.0270 (18) | 0.0023 (19) | 0.0057 (18) | −0.0015 (16) |
C6 | 0.060 (2) | 0.047 (2) | 0.0292 (19) | −0.0039 (19) | −0.0007 (17) | 0.0064 (17) |
O2 | 0.0386 (13) | 0.0284 (12) | 0.0351 (12) | −0.0076 (10) | 0.0089 (10) | 0.0017 (10) |
O1 | 0.087 (2) | 0.0472 (16) | 0.0611 (18) | −0.0163 (15) | 0.0381 (17) | −0.0080 (14) |
Zn1—O2 | 1.987 (2) | C13—C9 | 1.394 (4) |
Zn1—N1 | 2.120 (3) | C12—C11 | 1.390 (4) |
Zn1—O5 | 2.137 (2) | C12—H12A | 0.9300 |
Zn1—O4i | 2.154 (2) | C9—C10 | 1.401 (4) |
Zn1—N2 | 2.188 (2) | C16—C15 | 1.510 (4) |
Zn1—O3i | 2.347 (2) | C16—C17 | 1.513 (4) |
Zn1—C19i | 2.588 (3) | C16—H16A | 0.9700 |
O5—H5A | 0.8200 | C16—H16B | 0.9700 |
O5—H5B | 1.00 (4) | C19—C18 | 1.514 (4) |
O3—C19 | 1.237 (4) | C19—Zn1ii | 2.588 (3) |
O3—Zn1ii | 2.347 (2) | C15—O1 | 1.223 (4) |
O4—C19 | 1.276 (4) | C15—O2 | 1.272 (4) |
O4—Zn1ii | 2.154 (2) | C10—C11 | 1.363 (4) |
OW1—HWBA | 0.79 (4) | C10—H10A | 0.9300 |
OW1—HWA1 | 0.85 (4) | C2—C3 | 1.358 (4) |
N2—C1 | 1.330 (4) | C2—C1 | 1.400 (4) |
N2—C14 | 1.345 (4) | C2—H2A | 0.9300 |
N1—C12 | 1.329 (4) | C17—C18 | 1.518 (4) |
N1—C13 | 1.351 (4) | C17—H17A | 0.9700 |
N3—C7 | 1.314 (4) | C17—H17B | 0.9700 |
N3—C8 | 1.367 (4) | C3—H3B | 0.9300 |
C4—C14 | 1.401 (4) | C11—H11A | 0.9300 |
C4—C3 | 1.401 (4) | C18—H18A | 0.9700 |
C4—C5 | 1.459 (4) | C18—H18B | 0.9700 |
N4—C6 | 1.314 (4) | C1—H1A | 0.9300 |
N4—C5 | 1.352 (4) | C7—C6 | 1.401 (5) |
C14—C13 | 1.463 (4) | C7—H7A | 0.9300 |
C8—C5 | 1.401 (4) | C6—H6A | 0.9300 |
C8—C9 | 1.452 (4) | ||
O2—Zn1—N1 | 114.24 (9) | C15—C16—C17 | 115.5 (3) |
O2—Zn1—O5 | 92.64 (9) | C15—C16—H16A | 108.4 |
N1—Zn1—O5 | 90.76 (9) | C17—C16—H16A | 108.4 |
O2—Zn1—O4i | 96.87 (9) | C15—C16—H16B | 108.4 |
N1—Zn1—O4i | 148.89 (9) | C17—C16—H16B | 108.4 |
O5—Zn1—O4i | 87.08 (8) | H16A—C16—H16B | 107.5 |
O2—Zn1—N2 | 100.06 (10) | O3—C19—O4 | 120.8 (3) |
N1—Zn1—N2 | 77.41 (9) | O3—C19—C18 | 121.2 (3) |
O5—Zn1—N2 | 165.34 (9) | O4—C19—C18 | 118.0 (3) |
O4i—Zn1—N2 | 98.53 (9) | O3—C19—Zn1ii | 64.86 (16) |
O2—Zn1—O3i | 154.65 (8) | O4—C19—Zn1ii | 56.11 (15) |
N1—Zn1—O3i | 91.04 (9) | C18—C19—Zn1ii | 172.5 (2) |
O5—Zn1—O3i | 88.79 (9) | O1—C15—O2 | 122.9 (3) |
O4i—Zn1—O3i | 57.90 (8) | O1—C15—C16 | 120.1 (3) |
N2—Zn1—O3i | 82.87 (9) | O2—C15—C16 | 116.8 (3) |
Zn1—O5—H5A | 109.5 | C11—C10—C9 | 120.1 (3) |
Zn1—O5—H5B | 111 (2) | C11—C10—H10A | 120.0 |
H5A—O5—H5B | 98.4 | C9—C10—H10A | 120.0 |
C19—O3—Zn1ii | 86.64 (18) | C3—C2—C1 | 119.0 (3) |
C19—O4—Zn1ii | 94.44 (19) | C3—C2—H2A | 120.5 |
HWBA—OW1—HWA1 | 96 (3) | C1—C2—H2A | 120.5 |
C1—N2—C14 | 117.9 (3) | C16—C17—C18 | 113.3 (3) |
C1—N2—Zn1 | 129.1 (2) | C16—C17—H17A | 108.9 |
C14—N2—Zn1 | 112.93 (18) | C18—C17—H17A | 108.9 |
C12—N1—C13 | 118.3 (3) | C16—C17—H17B | 108.9 |
C12—N1—Zn1 | 126.4 (2) | C18—C17—H17B | 108.9 |
C13—N1—Zn1 | 115.27 (18) | H17A—C17—H17B | 107.7 |
C7—N3—C8 | 115.4 (3) | C2—C3—C4 | 119.8 (3) |
C14—C4—C3 | 117.3 (3) | C2—C3—H3B | 120.1 |
C14—C4—C5 | 120.3 (3) | C4—C3—H3B | 120.1 |
C3—C4—C5 | 122.4 (3) | C10—C11—C12 | 118.6 (3) |
C6—N4—C5 | 115.4 (3) | C10—C11—H11A | 120.7 |
N2—C14—C4 | 123.1 (3) | C12—C11—H11A | 120.7 |
N2—C14—C13 | 117.5 (2) | C19—C18—C17 | 114.4 (3) |
C4—C14—C13 | 119.4 (3) | C19—C18—H18A | 108.7 |
N3—C8—C5 | 121.1 (3) | C17—C18—H18A | 108.7 |
N3—C8—C9 | 118.0 (3) | C19—C18—H18B | 108.7 |
C5—C8—C9 | 120.8 (3) | C17—C18—H18B | 108.7 |
N1—C13—C9 | 122.5 (3) | H18A—C18—H18B | 107.6 |
N1—C13—C14 | 116.9 (2) | N2—C1—C2 | 122.9 (3) |
C9—C13—C14 | 120.6 (3) | N2—C1—H1A | 118.6 |
N1—C12—C11 | 123.0 (3) | C2—C1—H1A | 118.6 |
N1—C12—H12A | 118.5 | N3—C7—C6 | 122.9 (3) |
C11—C12—H12A | 118.5 | N3—C7—H7A | 118.6 |
C13—C9—C10 | 117.5 (3) | C6—C7—H7A | 118.6 |
C13—C9—C8 | 119.4 (3) | N4—C6—C7 | 122.9 (3) |
C10—C9—C8 | 123.1 (3) | N4—C6—H6A | 118.5 |
N4—C5—C8 | 122.2 (3) | C7—C6—H6A | 118.5 |
N4—C5—C4 | 118.4 (3) | C15—O2—Zn1 | 119.5 (2) |
C8—C5—C4 | 119.4 (3) | ||
O2—Zn1—N2—C1 | −69.5 (3) | C14—C13—C9—C8 | −1.3 (4) |
N1—Zn1—N2—C1 | 177.7 (3) | N3—C8—C9—C13 | −179.6 (3) |
O5—Zn1—N2—C1 | 140.8 (3) | C5—C8—C9—C13 | 0.0 (4) |
O4i—Zn1—N2—C1 | 29.1 (3) | N3—C8—C9—C10 | −0.4 (5) |
O3i—Zn1—N2—C1 | 85.0 (3) | C5—C8—C9—C10 | 179.2 (3) |
C19i—Zn1—N2—C1 | 57.9 (3) | C6—N4—C5—C8 | 0.0 (5) |
O2—Zn1—N2—C14 | 113.54 (19) | C6—N4—C5—C4 | −179.4 (3) |
N1—Zn1—N2—C14 | 0.73 (18) | N3—C8—C5—N4 | 0.5 (5) |
O5—Zn1—N2—C14 | −36.1 (4) | C9—C8—C5—N4 | −179.1 (3) |
O4i—Zn1—N2—C14 | −147.87 (19) | N3—C8—C5—C4 | 179.9 (3) |
O3i—Zn1—N2—C14 | −91.94 (19) | C9—C8—C5—C4 | 0.2 (4) |
C19i—Zn1—N2—C14 | −119.0 (2) | C14—C4—C5—N4 | −179.7 (3) |
O2—Zn1—N1—C12 | 82.8 (3) | C3—C4—C5—N4 | −0.4 (5) |
O5—Zn1—N1—C12 | −10.4 (2) | C14—C4—C5—C8 | 0.9 (4) |
O4i—Zn1—N1—C12 | −96.0 (3) | C3—C4—C5—C8 | −179.8 (3) |
N2—Zn1—N1—C12 | 178.3 (3) | Zn1ii—O3—C19—O4 | 4.3 (3) |
O3i—Zn1—N1—C12 | −99.2 (2) | Zn1ii—O3—C19—C18 | −174.8 (3) |
C19i—Zn1—N1—C12 | −96.7 (3) | Zn1ii—O4—C19—O3 | −4.7 (3) |
O2—Zn1—N1—C13 | −95.7 (2) | Zn1ii—O4—C19—C18 | 174.5 (2) |
O5—Zn1—N1—C13 | 171.1 (2) | C17—C16—C15—O1 | −13.0 (5) |
O4i—Zn1—N1—C13 | 85.5 (3) | C17—C16—C15—O2 | 172.8 (3) |
N2—Zn1—N1—C13 | −0.17 (19) | C13—C9—C10—C11 | −1.0 (5) |
O3i—Zn1—N1—C13 | 82.3 (2) | C8—C9—C10—C11 | 179.8 (3) |
C19i—Zn1—N1—C13 | 84.8 (2) | C15—C16—C17—C18 | 174.5 (3) |
C1—N2—C14—C4 | 0.8 (4) | C1—C2—C3—C4 | 0.8 (5) |
Zn1—N2—C14—C4 | 178.2 (2) | C14—C4—C3—C2 | 0.0 (5) |
C1—N2—C14—C13 | −178.5 (2) | C5—C4—C3—C2 | −179.3 (3) |
Zn1—N2—C14—C13 | −1.2 (3) | C9—C10—C11—C12 | 1.3 (5) |
C3—C4—C14—N2 | −0.9 (4) | N1—C12—C11—C10 | −0.8 (5) |
C5—C4—C14—N2 | 178.4 (3) | O3—C19—C18—C17 | 8.1 (4) |
C3—C4—C14—C13 | 178.4 (3) | O4—C19—C18—C17 | −171.1 (3) |
C5—C4—C14—C13 | −2.2 (4) | Zn1ii—C19—C18—C17 | −133.6 (16) |
C7—N3—C8—C5 | −0.4 (5) | C16—C17—C18—C19 | 175.0 (3) |
C7—N3—C8—C9 | 179.2 (3) | C14—N2—C1—C2 | 0.1 (4) |
C12—N1—C13—C9 | 0.2 (4) | Zn1—N2—C1—C2 | −176.8 (2) |
Zn1—N1—C13—C9 | 178.8 (2) | C3—C2—C1—N2 | −0.9 (5) |
C12—N1—C13—C14 | −179.0 (2) | C8—N3—C7—C6 | 0.0 (5) |
Zn1—N1—C13—C14 | −0.4 (3) | C5—N4—C6—C7 | −0.4 (5) |
N2—C14—C13—N1 | 1.1 (4) | N3—C7—C6—N4 | 0.5 (6) |
C4—C14—C13—N1 | −178.3 (3) | O1—C15—O2—Zn1 | 1.6 (5) |
N2—C14—C13—C9 | −178.1 (3) | C16—C15—O2—Zn1 | 175.6 (2) |
C4—C14—C13—C9 | 2.5 (4) | N1—Zn1—O2—C15 | 18.7 (3) |
C13—N1—C12—C11 | 0.1 (4) | O5—Zn1—O2—C15 | 110.7 (2) |
Zn1—N1—C12—C11 | −178.3 (2) | O4i—Zn1—O2—C15 | −161.9 (2) |
N1—C13—C9—C10 | 0.2 (4) | N2—Zn1—O2—C15 | −61.9 (2) |
C14—C13—C9—C10 | 179.4 (3) | O3i—Zn1—O2—C15 | −156.5 (2) |
N1—C13—C9—C8 | 179.5 (3) | C19i—Zn1—O2—C15 | −161.8 (2) |
Symmetry codes: (i) x−1, y−1, z; (ii) x+1, y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···OW1iii | 0.82 | 1.89 | 2.702 (3) | 173 |
O5—H5B···O4iv | 1.00 (4) | 1.91 (4) | 2.856 (3) | 157 (3) |
OW1—HWA1···O4v | 0.85 (4) | 2.03 (4) | 2.840 (4) | 161 (3) |
OW1—HWBA···O2 | 0.79 (4) | 1.95 (4) | 2.733 (4) | 170 (4) |
Symmetry codes: (iii) −x+1, −y, −z+1; (iv) −x+2, −y+1, −z+1; (v) −x+3, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C5H6O4)(C14H8N4)(H2O)]·H2O |
Mr | 463.74 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 292 |
a, b, c (Å) | 6.397 (3), 9.384 (5), 16.409 (8) |
α, β, γ (°) | 98.067 (5), 100.859 (5), 101.274 (5) |
V (Å3) | 932.5 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.37 |
Crystal size (mm) | 0.78 × 0.52 × 0.36 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2002) |
Tmin, Tmax | 0.432, 0.611 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8019, 3702, 2929 |
Rint | 0.062 |
(sin θ/λ)max (Å−1) | 0.619 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.100, 0.98 |
No. of reflections | 3702 |
No. of parameters | 283 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.86, −0.59 |
Computer programs: SMART (Bruker, 2002), SAINT (Bruker, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Zn1—O2 | 1.987 (2) | Zn1—O4i | 2.154 (2) |
Zn1—N1 | 2.120 (3) | Zn1—N2 | 2.188 (2) |
Zn1—O5 | 2.137 (2) | Zn1—O3i | 2.347 (2) |
Symmetry code: (i) x−1, y−1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···OW1ii | 0.82 | 1.89 | 2.702 (3) | 173 |
O5—H5B···O4iii | 1.00 (4) | 1.91 (4) | 2.856 (3) | 157 (3) |
OW1—HWA1···O4iv | 0.85 (4) | 2.03 (4) | 2.840 (4) | 161 (3) |
OW1—HWBA···O2 | 0.79 (4) | 1.95 (4) | 2.733 (4) | 170 (4) |
Symmetry codes: (ii) −x+1, −y, −z+1; (iii) −x+2, −y+1, −z+1; (iv) −x+3, −y+1, −z+1. |
The 1,10-phenanthroline (phen) ligand and its derivatives are important ligands with numerous uses in the construction of metal-organic complexes.Supramolecular architectures baswd on the phen derivative pyrazino[2,3-f][1,10]phenanthroline(PyPhen) molecule have considerably less attention (Li et al.,2006) A s part of our ongoing studies in this area (Fang-Wei & Mei, 2007). We selected glutaric acid (C5H6O42-) to act as a metal-metal linker in its deprotonated form and L as a secondary ligand, generating the title compound, [Zn(C14H8N4)(C5H6O4)(H2O).H2O], a new coordinationg polymer, which is reported here. In compound (I), the ZnII atom of unit is surrounded by two N atoms derived from the bidentate PyPhen ligand, three O atoms from two glutaric acid dianions (one monodentate, one bidentate) and one water molecule (Figure 1, Table 1) a distorted octahedral cis-ZnN2O4arrangement is formed. Neighboring ZnII atoms are bridged by the centrosymmetric glutaric acid ligands forming a one-dimensional chain structure (Fig.2). In the crystal structure, adjacent chains are connected through π-π interactions between PyPhen and PyPhen ligands with a minimum centroid -centroid stacking distance of 3.372 Å. O—H···O hydrogen bonds involving the water molecules and carboxylate O atom acceptors (Table 2) complete the structure.