Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053681004688X/hb5733sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053681004688X/hb5733Isup2.hkl |
CCDC reference: 803217
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.004 Å
- R factor = 0.053
- wR factor = 0.137
- Data-to-parameter ratio = 16.0
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 3
Alert level G PLAT960_ALERT_3_G Number of Intensities with I .LT. - 2*sig(I) .. 1 PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 1
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
To a solution of 2-amino-4-chlorobenzonitrile (4.2 mmol) in N,N-dimethylformamide was added ammonium chloride (3 eq) and sodium azide (3 eq). The resulting reaction mixture was refluxed for 12 h. The completion of reaction was checked by TLC (100% EA). The reaction mixture was poured into ice-water after cooling to RT and acidified to give tetrazoles as a white mass. The resulting compound was then condensed with acetone to get the title compound: colourless plates were obtained by crystallization from acetone under slow evaporation (Mp. 501 K).
The N-bound hydrogen atom was located from difference Fourier map and refined freely. The rest of hydrogen atoms were positioned geometrically [C–H = 0.93 or 0.96 Å] and refined using a riding model [Uiso(H) = 1.2 or 1.5Ueq]. A rotating-group model were applied for methyl groups.
A number of tetrazole derivatives were reported as to be antifungal agents (Upadhayaya et al., 2004), antiviral agents (Poonian et al., 1976), angiotensin II AT1 receptor antagonists (Ismail et al., 2006), antibacterial agents (Mulwad & Kewat, 2008) and anti-ulcer agents (Uchida et al., 1989). On the basis of these considerations, our particular attention was directed to synthesize some tetrazole derivatives.
The title compound is a three fused-ring structure (Fig. 1). The tetrazole ring and the phenyl ring make dihedral angle of 7.7 (2)°. The hexahydropyrimidine ring adopts a screw-boat conformation, with puckering amplitude Q = 0.308 (3) Å, θ = 61.8 (6)°, φ = 270.4 (7)° (Boeyens, 1978). In the crystal structure, intermolecular bifurcated N5—H1N5···N1 and N5—H1N5···N2 hydrogen bonds link the molecules into chains along c axis (Fig. 2, Table 1).
For applications of tetrazole derivatives, see: Upadhayaya et al. (2004); Poonian et al. (1976); Ismail et al. (2006); Mulwad & Kewat (2008); Uchida et al. (1989). For ring conformations, see: Boeyens (1978). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
C10H10ClN5 | F(000) = 488 |
Mr = 235.68 | Dx = 1.491 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1888 reflections |
a = 6.8324 (16) Å | θ = 3.0–29.9° |
b = 21.532 (5) Å | µ = 0.34 mm−1 |
c = 9.4337 (16) Å | T = 100 K |
β = 130.823 (11)° | Plate, colourless |
V = 1050.2 (4) Å3 | 0.16 × 0.11 × 0.05 mm |
Z = 4 |
Bruker APEXII DUO CCD diffractometer | 2412 independent reflections |
Radiation source: fine-focus sealed tube | 1777 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.066 |
φ and ω scans | θmax = 27.5°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −8→8 |
Tmin = 0.948, Tmax = 0.982 | k = −27→27 |
9660 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0361P)2 + 1.9098P] where P = (Fo2 + 2Fc2)/3 |
2412 reflections | (Δ/σ)max < 0.001 |
151 parameters | Δρmax = 0.61 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C10H10ClN5 | V = 1050.2 (4) Å3 |
Mr = 235.68 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.8324 (16) Å | µ = 0.34 mm−1 |
b = 21.532 (5) Å | T = 100 K |
c = 9.4337 (16) Å | 0.16 × 0.11 × 0.05 mm |
β = 130.823 (11)° |
Bruker APEXII DUO CCD diffractometer | 2412 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 1777 reflections with I > 2σ(I) |
Tmin = 0.948, Tmax = 0.982 | Rint = 0.066 |
9660 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 0 restraints |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.61 e Å−3 |
2412 reflections | Δρmin = −0.31 e Å−3 |
151 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.68351 (15) | 0.62515 (4) | 0.46138 (11) | 0.0285 (2) | |
N1 | 0.0252 (5) | 0.85800 (13) | −0.2050 (3) | 0.0225 (6) | |
N2 | 0.0079 (5) | 0.92121 (14) | −0.2261 (3) | 0.0276 (6) | |
N3 | 0.1672 (5) | 0.94937 (13) | −0.0661 (3) | 0.0248 (6) | |
N4 | 0.2938 (4) | 0.90385 (12) | 0.0634 (3) | 0.0192 (5) | |
N5 | 0.6368 (5) | 0.85848 (12) | 0.3484 (3) | 0.0210 (6) | |
C1 | 0.2056 (5) | 0.84885 (14) | −0.0218 (4) | 0.0190 (6) | |
C2 | 0.3106 (5) | 0.79248 (14) | 0.0880 (4) | 0.0185 (6) | |
C3 | 0.2129 (6) | 0.73316 (15) | 0.0145 (4) | 0.0216 (7) | |
H3A | 0.0704 | 0.7285 | −0.1122 | 0.026* | |
C4 | 0.3259 (6) | 0.68153 (15) | 0.1280 (4) | 0.0234 (7) | |
H4A | 0.2613 | 0.6420 | 0.0797 | 0.028* | |
C5 | 0.5397 (6) | 0.69013 (15) | 0.3174 (4) | 0.0213 (6) | |
C6 | 0.6402 (6) | 0.74777 (15) | 0.3947 (4) | 0.0209 (6) | |
H6A | 0.7816 | 0.7518 | 0.5218 | 0.025* | |
C7 | 0.5276 (5) | 0.80012 (14) | 0.2800 (4) | 0.0176 (6) | |
C8 | 0.4845 (5) | 0.91539 (14) | 0.2689 (4) | 0.0189 (6) | |
C9 | 0.6573 (6) | 0.96910 (15) | 0.3100 (4) | 0.0271 (7) | |
H9A | 0.7358 | 0.9608 | 0.2569 | 0.041* | |
H9B | 0.7896 | 0.9742 | 0.4431 | 0.041* | |
H9C | 0.5561 | 1.0064 | 0.2561 | 0.041* | |
C10 | 0.3352 (6) | 0.92761 (16) | 0.3348 (4) | 0.0254 (7) | |
H10A | 0.2294 | 0.8923 | 0.3065 | 0.038* | |
H10B | 0.2275 | 0.9635 | 0.2718 | 0.038* | |
H10C | 0.4549 | 0.9347 | 0.4675 | 0.038* | |
H1N5 | 0.751 (8) | 0.8595 (18) | 0.467 (6) | 0.039 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0280 (4) | 0.0248 (4) | 0.0334 (4) | 0.0052 (3) | 0.0204 (3) | 0.0085 (4) |
N1 | 0.0187 (12) | 0.0307 (16) | 0.0131 (12) | 0.0000 (10) | 0.0082 (10) | 0.0003 (11) |
N2 | 0.0240 (13) | 0.0355 (17) | 0.0148 (12) | 0.0021 (12) | 0.0089 (11) | 0.0035 (12) |
N3 | 0.0251 (13) | 0.0289 (15) | 0.0147 (12) | 0.0052 (11) | 0.0106 (11) | 0.0061 (11) |
N4 | 0.0191 (12) | 0.0225 (14) | 0.0107 (11) | 0.0023 (10) | 0.0074 (10) | 0.0021 (10) |
N5 | 0.0173 (12) | 0.0213 (14) | 0.0104 (12) | −0.0010 (10) | 0.0029 (10) | −0.0017 (10) |
C1 | 0.0154 (13) | 0.0267 (16) | 0.0135 (13) | −0.0013 (12) | 0.0088 (11) | −0.0040 (12) |
C2 | 0.0167 (13) | 0.0237 (17) | 0.0151 (13) | 0.0009 (12) | 0.0104 (11) | −0.0009 (12) |
C3 | 0.0182 (14) | 0.0282 (18) | 0.0166 (14) | −0.0047 (12) | 0.0105 (12) | −0.0053 (13) |
C4 | 0.0237 (15) | 0.0227 (17) | 0.0253 (16) | −0.0048 (13) | 0.0166 (13) | −0.0063 (13) |
C5 | 0.0214 (14) | 0.0236 (17) | 0.0257 (15) | 0.0044 (12) | 0.0184 (13) | 0.0044 (13) |
C6 | 0.0178 (14) | 0.0259 (17) | 0.0165 (14) | 0.0015 (12) | 0.0101 (12) | 0.0001 (12) |
C7 | 0.0162 (13) | 0.0204 (16) | 0.0171 (13) | −0.0006 (11) | 0.0113 (11) | −0.0016 (12) |
C8 | 0.0174 (13) | 0.0207 (16) | 0.0135 (13) | −0.0005 (12) | 0.0079 (11) | 0.0006 (12) |
C9 | 0.0288 (16) | 0.0279 (18) | 0.0178 (14) | −0.0080 (14) | 0.0122 (13) | −0.0009 (13) |
C10 | 0.0240 (15) | 0.0300 (19) | 0.0195 (15) | 0.0002 (13) | 0.0130 (13) | −0.0006 (13) |
Cl1—C5 | 1.739 (3) | C3—H3A | 0.9300 |
N1—C1 | 1.326 (4) | C4—C5 | 1.396 (4) |
N1—N2 | 1.369 (4) | C4—H4A | 0.9300 |
N2—N3 | 1.297 (4) | C5—C6 | 1.374 (4) |
N3—N4 | 1.349 (3) | C6—C7 | 1.394 (4) |
N4—C1 | 1.334 (4) | C6—H6A | 0.9300 |
N4—C8 | 1.489 (3) | C8—C9 | 1.511 (4) |
N5—C7 | 1.386 (4) | C8—C10 | 1.525 (4) |
N5—C8 | 1.458 (4) | C9—H9A | 0.9600 |
N5—H1N5 | 0.85 (4) | C9—H9B | 0.9600 |
C1—C2 | 1.445 (4) | C9—H9C | 0.9600 |
C2—C3 | 1.397 (4) | C10—H10A | 0.9600 |
C2—C7 | 1.413 (4) | C10—H10B | 0.9600 |
C3—C4 | 1.378 (4) | C10—H10C | 0.9600 |
C1—N1—N2 | 104.8 (2) | C5—C6—C7 | 119.2 (3) |
N3—N2—N1 | 111.6 (2) | C5—C6—H6A | 120.4 |
N2—N3—N4 | 105.5 (3) | C7—C6—H6A | 120.4 |
C1—N4—N3 | 109.3 (2) | N5—C7—C6 | 121.0 (3) |
C1—N4—C8 | 126.8 (2) | N5—C7—C2 | 119.8 (3) |
N3—N4—C8 | 123.7 (2) | C6—C7—C2 | 119.0 (3) |
C7—N5—C8 | 122.4 (2) | N5—C8—N4 | 104.6 (2) |
C7—N5—H1N5 | 113 (3) | N5—C8—C9 | 109.6 (2) |
C8—N5—H1N5 | 113 (3) | N4—C8—C9 | 109.5 (2) |
N1—C1—N4 | 108.8 (3) | N5—C8—C10 | 112.2 (2) |
N1—C1—C2 | 131.4 (3) | N4—C8—C10 | 108.1 (2) |
N4—C1—C2 | 119.8 (2) | C9—C8—C10 | 112.4 (3) |
C3—C2—C7 | 120.2 (3) | C8—C9—H9A | 109.5 |
C3—C2—C1 | 124.0 (3) | C8—C9—H9B | 109.5 |
C7—C2—C1 | 115.7 (3) | H9A—C9—H9B | 109.5 |
C4—C3—C2 | 120.6 (3) | C8—C9—H9C | 109.5 |
C4—C3—H3A | 119.7 | H9A—C9—H9C | 109.5 |
C2—C3—H3A | 119.7 | H9B—C9—H9C | 109.5 |
C3—C4—C5 | 118.3 (3) | C8—C10—H10A | 109.5 |
C3—C4—H4A | 120.9 | C8—C10—H10B | 109.5 |
C5—C4—H4A | 120.9 | H10A—C10—H10B | 109.5 |
C6—C5—C4 | 122.7 (3) | C8—C10—H10C | 109.5 |
C6—C5—Cl1 | 118.8 (2) | H10A—C10—H10C | 109.5 |
C4—C5—Cl1 | 118.5 (2) | H10B—C10—H10C | 109.5 |
C1—N1—N2—N3 | −0.1 (3) | C4—C5—C6—C7 | −0.8 (4) |
N1—N2—N3—N4 | 0.4 (3) | Cl1—C5—C6—C7 | 179.5 (2) |
N2—N3—N4—C1 | −0.7 (3) | C8—N5—C7—C6 | −153.7 (3) |
N2—N3—N4—C8 | −175.8 (2) | C8—N5—C7—C2 | 31.3 (4) |
N2—N1—C1—N4 | −0.3 (3) | C5—C6—C7—N5 | −174.1 (3) |
N2—N1—C1—C2 | 179.9 (3) | C5—C6—C7—C2 | 1.0 (4) |
N3—N4—C1—N1 | 0.6 (3) | C3—C2—C7—N5 | 174.4 (3) |
C8—N4—C1—N1 | 175.6 (2) | C1—C2—C7—N5 | −4.6 (4) |
N3—N4—C1—C2 | −179.6 (2) | C3—C2—C7—C6 | −0.7 (4) |
C8—N4—C1—C2 | −4.6 (4) | C1—C2—C7—C6 | −179.7 (2) |
N1—C1—C2—C3 | −7.2 (5) | C7—N5—C8—N4 | −38.5 (3) |
N4—C1—C2—C3 | 173.0 (3) | C7—N5—C8—C9 | −155.9 (3) |
N1—C1—C2—C7 | 171.7 (3) | C7—N5—C8—C10 | 78.4 (3) |
N4—C1—C2—C7 | −8.0 (4) | C1—N4—C8—N5 | 25.7 (4) |
C7—C2—C3—C4 | 0.2 (4) | N3—N4—C8—N5 | −159.9 (2) |
C1—C2—C3—C4 | 179.2 (3) | C1—N4—C8—C9 | 143.2 (3) |
C2—C3—C4—C5 | −0.1 (4) | N3—N4—C8—C9 | −42.5 (4) |
C3—C4—C5—C6 | 0.4 (4) | C1—N4—C8—C10 | −94.0 (3) |
C3—C4—C5—Cl1 | −179.9 (2) | N3—N4—C8—C10 | 80.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H1N5···N1i | 0.85 (4) | 2.35 (4) | 3.190 (3) | 173 (6) |
N5—H1N5···N2i | 0.85 (4) | 2.57 (4) | 3.326 (3) | 150 (4) |
Symmetry code: (i) x+1, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C10H10ClN5 |
Mr | 235.68 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 6.8324 (16), 21.532 (5), 9.4337 (16) |
β (°) | 130.823 (11) |
V (Å3) | 1050.2 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.34 |
Crystal size (mm) | 0.16 × 0.11 × 0.05 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.948, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9660, 2412, 1777 |
Rint | 0.066 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.137, 1.12 |
No. of reflections | 2412 |
No. of parameters | 151 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.61, −0.31 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008), SHELXTL and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H1N5···N1i | 0.85 (4) | 2.35 (4) | 3.190 (3) | 173 (6) |
N5—H1N5···N2i | 0.85 (4) | 2.57 (4) | 3.326 (3) | 150 (4) |
Symmetry code: (i) x+1, y, z+1. |
A number of tetrazole derivatives were reported as to be antifungal agents (Upadhayaya et al., 2004), antiviral agents (Poonian et al., 1976), angiotensin II AT1 receptor antagonists (Ismail et al., 2006), antibacterial agents (Mulwad & Kewat, 2008) and anti-ulcer agents (Uchida et al., 1989). On the basis of these considerations, our particular attention was directed to synthesize some tetrazole derivatives.
The title compound is a three fused-ring structure (Fig. 1). The tetrazole ring and the phenyl ring make dihedral angle of 7.7 (2)°. The hexahydropyrimidine ring adopts a screw-boat conformation, with puckering amplitude Q = 0.308 (3) Å, θ = 61.8 (6)°, φ = 270.4 (7)° (Boeyens, 1978). In the crystal structure, intermolecular bifurcated N5—H1N5···N1 and N5—H1N5···N2 hydrogen bonds link the molecules into chains along c axis (Fig. 2, Table 1).