Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053681104030X/hb6430sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053681104030X/hb6430Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S160053681104030X/hb6430Isup3.cml |
CCDC reference: 852125
Key indicators
- Single-crystal X-ray study
- T = 113 K
- Mean (C-C) = 0.003 Å
- R factor = 0.026
- wR factor = 0.059
- Data-to-parameter ratio = 19.2
checkCIF/PLATON results
No syntax errors found
Alert level C STRVA01_ALERT_4_C Flack parameter is too small From the CIF: _refine_ls_abs_structure_Flack -0.250 From the CIF: _refine_ls_abs_structure_Flack_su 0.070 PLAT125_ALERT_4_C No '_symmetry_space_group_name_Hall' Given ..... ? PLAT230_ALERT_2_C Hirshfeld Test Diff for S1 -- P1 .. 6.0 su PLAT230_ALERT_2_C Hirshfeld Test Diff for C4 -- C5 .. 5.2 su PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 2
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.94 From the CIF: _reflns_number_total 1590 Count of symmetry unique reflns 874 Completeness (_total/calc) 181.92% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 716 Fraction of Friedel pairs measured 0.819 Are heavy atom types Z>Si present yes PLAT005_ALERT_5_G No _iucr_refine_instructions_details in CIF .... ? PLAT033_ALERT_4_G Flack x Parameter Value Deviates from Zero ..... -0.250 PLAT916_ALERT_2_G Hooft y and Flack x Parameter values differ by . 0.18 PLAT961_ALERT_5_G Dataset Contains no Negative Intensities ....... !
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 5 ALERT level C = Check. Ensure it is not caused by an omission or oversight 5 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level G PUBL013_ALERT_1_G The _publ_section_comment (discussion of study) is missing. This is required for a full paper submission (but is optional for an electronic paper).
0 ALERT level A = Data missing that is essential or data in wrong format 1 ALERT level G = General alerts. Data that may be required is missing
Triethylamine (127.0 mmol) were added to the dichloromethane solution (80.0 ml) of phenol (120.0 mmol) while stirring. Thiophosphory chloride (60.0 mmol) was slowly dropwise added to the above solution, and then the rection mixture was refluxed. After the reaction was completed, it is cooled to room temperature. The reaction mixture was washed with water and brine, respectively. The separated organic phase was dried with anhydrous sodium sulfate, and then the solvents were evporated thoroughly in vacuo. The obtained crude was separated through column chromatography on silica gel to give the white product. Colourless prisms of the title compound were obtained by slow evaporation of the dichloromethane/n-hexane solutions at room temperature. 31P NMR(161.9 MHz, CDCl3, TMS): 58.73 (s) p.p.m..
All the H atoms were positioned geometrically (C—H = 0.95 Å) and refined as riding with Uiso(H) = 1.2Ueq(C).
Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005).
Fig. 1. The molecular structure of (I) showing 50% displacement ellipsoids. Symmetry code: (i) –x, y, z. | |
Fig. 2. The crystal packing for (I). |
C12H10ClO2PS | Dx = 1.473 Mg m−3 |
Mr = 284.68 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pmn21 | Cell parameters from 2338 reflections |
a = 14.9779 (18) Å | θ = 2.7–28.0° |
b = 7.3709 (10) Å | µ = 0.57 mm−1 |
c = 5.8157 (10) Å | T = 113 K |
V = 642.06 (16) Å3 | Prism, colorless |
Z = 2 | 0.26 × 0.20 × 0.16 mm |
F(000) = 292 |
Rigaku Saturn724 CCD diffractometer | 1590 independent reflections |
Radiation source: rotating anode | 1422 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.046 |
Detector resolution: 14.22 pixels mm-1 | θmax = 27.9°, θmin = 2.7° |
ω and ϕ scans | h = −18→19 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −9→9 |
Tmin = 0.866, Tmax = 0.914 | l = −7→7 |
6462 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.026 | w = 1/[σ2(Fo2) + (0.0202P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.059 | (Δ/σ)max = 0.002 |
S = 1.01 | Δρmax = 0.33 e Å−3 |
1590 reflections | Δρmin = −0.28 e Å−3 |
83 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.034 (2) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 716 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.25 (7) |
C12H10ClO2PS | V = 642.06 (16) Å3 |
Mr = 284.68 | Z = 2 |
Orthorhombic, Pmn21 | Mo Kα radiation |
a = 14.9779 (18) Å | µ = 0.57 mm−1 |
b = 7.3709 (10) Å | T = 113 K |
c = 5.8157 (10) Å | 0.26 × 0.20 × 0.16 mm |
Rigaku Saturn724 CCD diffractometer | 1590 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | 1422 reflections with I > 2σ(I) |
Tmin = 0.866, Tmax = 0.914 | Rint = 0.046 |
6462 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.059 | Δρmax = 0.33 e Å−3 |
S = 1.01 | Δρmin = −0.28 e Å−3 |
1590 reflections | Absolute structure: Flack (1983), 716 Friedel pairs |
83 parameters | Absolute structure parameter: −0.25 (7) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.0000 | 0.74395 (10) | 0.33956 (11) | 0.01650 (17) | |
Cl1 | 0.0000 | 0.78689 (13) | 0.00139 (10) | 0.0391 (3) | |
S1 | 0.0000 | 0.49265 (10) | 0.42063 (18) | 0.0294 (2) | |
O1 | 0.07867 (7) | 0.86334 (15) | 0.4369 (2) | 0.0162 (3) | |
C1 | 0.16873 (10) | 0.8018 (2) | 0.4313 (4) | 0.0137 (4) | |
C2 | 0.20060 (11) | 0.7047 (2) | 0.6162 (3) | 0.0166 (4) | |
H2 | 0.1623 | 0.6729 | 0.7400 | 0.020* | |
C3 | 0.29001 (12) | 0.6542 (3) | 0.6177 (3) | 0.0196 (4) | |
H3 | 0.3137 | 0.5884 | 0.7442 | 0.024* | |
C4 | 0.34463 (11) | 0.7004 (2) | 0.4335 (4) | 0.0191 (4) | |
H4 | 0.4056 | 0.6646 | 0.4337 | 0.023* | |
C5 | 0.31099 (12) | 0.7976 (3) | 0.2507 (3) | 0.0203 (5) | |
H5 | 0.3491 | 0.8291 | 0.1264 | 0.024* | |
C6 | 0.22133 (11) | 0.8504 (2) | 0.2460 (3) | 0.0166 (4) | |
H6 | 0.1975 | 0.9170 | 0.1204 | 0.020* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.0102 (3) | 0.0226 (4) | 0.0167 (4) | 0.000 | 0.000 | −0.0060 (3) |
Cl1 | 0.0210 (4) | 0.0820 (7) | 0.0144 (4) | 0.000 | 0.000 | −0.0040 (4) |
S1 | 0.0152 (3) | 0.0179 (3) | 0.0549 (5) | 0.000 | 0.000 | −0.0040 (4) |
O1 | 0.0084 (6) | 0.0174 (7) | 0.0228 (7) | −0.0005 (5) | −0.0024 (5) | −0.0040 (6) |
C1 | 0.0078 (8) | 0.0143 (9) | 0.0188 (9) | −0.0010 (7) | −0.0003 (8) | −0.0051 (8) |
C2 | 0.0150 (9) | 0.0197 (12) | 0.0151 (11) | −0.0015 (8) | 0.0002 (7) | 0.0007 (8) |
C3 | 0.0181 (9) | 0.0188 (11) | 0.0219 (11) | 0.0012 (8) | −0.0054 (8) | 0.0023 (9) |
C4 | 0.0125 (9) | 0.0180 (9) | 0.0267 (11) | 0.0020 (7) | −0.0026 (8) | −0.0029 (9) |
C5 | 0.0137 (10) | 0.0216 (11) | 0.0255 (11) | −0.0039 (8) | 0.0076 (7) | −0.0015 (8) |
C6 | 0.0162 (10) | 0.0163 (10) | 0.0174 (10) | −0.0016 (8) | −0.0050 (7) | 0.0021 (8) |
P1—O1i | 1.5758 (12) | C2—H2 | 0.9500 |
P1—O1 | 1.5758 (12) | C3—C4 | 1.390 (3) |
P1—S1 | 1.9114 (11) | C3—H3 | 0.9500 |
P1—Cl1 | 1.9920 (9) | C4—C5 | 1.378 (3) |
O1—C1 | 1.4234 (17) | C4—H4 | 0.9500 |
C1—C2 | 1.377 (3) | C5—C6 | 1.398 (2) |
C1—C6 | 1.382 (3) | C5—H5 | 0.9500 |
C2—C3 | 1.390 (2) | C6—H6 | 0.9500 |
O1i—P1—O1 | 96.79 (9) | C2—C3—C4 | 119.77 (17) |
O1i—P1—S1 | 116.91 (6) | C2—C3—H3 | 120.1 |
O1—P1—S1 | 116.91 (6) | C4—C3—H3 | 120.1 |
O1i—P1—Cl1 | 105.42 (6) | C5—C4—C3 | 120.46 (16) |
O1—P1—Cl1 | 105.42 (6) | C5—C4—H4 | 119.8 |
S1—P1—Cl1 | 113.42 (6) | C3—C4—H4 | 119.8 |
C1—O1—P1 | 121.50 (11) | C4—C5—C6 | 120.71 (18) |
C2—C1—C6 | 123.07 (15) | C4—C5—H5 | 119.6 |
C2—C1—O1 | 118.43 (16) | C6—C5—H5 | 119.6 |
C6—C1—O1 | 118.41 (17) | C1—C6—C5 | 117.43 (17) |
C1—C2—C3 | 118.56 (16) | C1—C6—H6 | 121.3 |
C1—C2—H2 | 120.7 | C5—C6—H6 | 121.3 |
C3—C2—H2 | 120.7 | ||
O1i—P1—O1—C1 | 169.66 (11) | C1—C2—C3—C4 | −0.7 (3) |
S1—P1—O1—C1 | 44.80 (16) | C2—C3—C4—C5 | 0.7 (3) |
Cl1—P1—O1—C1 | −82.25 (14) | C3—C4—C5—C6 | −0.5 (3) |
P1—O1—C1—C2 | −90.03 (19) | C2—C1—C6—C5 | −0.3 (3) |
P1—O1—C1—C6 | 93.23 (17) | O1—C1—C6—C5 | 176.31 (15) |
C6—C1—C2—C3 | 0.5 (3) | C4—C5—C6—C1 | 0.2 (3) |
O1—C1—C2—C3 | −176.05 (16) |
Symmetry code: (i) −x, y, z. |
Experimental details
Crystal data | |
Chemical formula | C12H10ClO2PS |
Mr | 284.68 |
Crystal system, space group | Orthorhombic, Pmn21 |
Temperature (K) | 113 |
a, b, c (Å) | 14.9779 (18), 7.3709 (10), 5.8157 (10) |
V (Å3) | 642.06 (16) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.57 |
Crystal size (mm) | 0.26 × 0.20 × 0.16 |
Data collection | |
Diffractometer | Rigaku Saturn724 CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2005) |
Tmin, Tmax | 0.866, 0.914 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6462, 1590, 1422 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.659 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.059, 1.01 |
No. of reflections | 1590 |
No. of parameters | 83 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.28 |
Absolute structure | Flack (1983), 716 Friedel pairs |
Absolute structure parameter | −0.25 (7) |
Computer programs: CrystalClear (Rigaku/MSC, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), CrystalStructure (Rigaku/MSC, 2005).