In the title compound, C
17H
18N
2O
3S
2, the pyrimidine ring adopts a shallow sofa conformation, with the C atom bearing the axially-oriented thiophene ring as the flap [deviation = 0.439 (3) Å]. The plane of the thiophene ring lies almost normal to the pyrimidine ring, making a dihedral angle of 79.36 (19)°. In the crystal, pairs of very weak C—H
O hydrogen bonds link the molecules related by twofold rotation axes, forming
R22(18) rings, which are in turn linked by another C—H
O interaction, forming chains of rings along [010]. In addition, weak C—H
π(thiophene) interactions link the chains into layers parallel to [001] and π–π interactions with a centroid–centroid distance of 3.772 (10) Å connect these layers into a three-dimensional network.
Supporting information
CCDC reference: 1405373
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.006 Å
- R factor = 0.065
- wR factor = 0.189
- Data-to-parameter ratio = 13.7
checkCIF/PLATON results
No syntax errors found
Alert level A
PLAT222_ALERT_3_A Large Non-Solvent H Uiso(max)/Uiso(min) ... 10.0 Ratio
| Author Response: This structure contains ester groups. The thermal parameters for
one of the carbon atom 'C11' is very high. This was attempted to be modeled as
disorder but the refinement was not successful.
|
Alert level C
PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) Range 3.2 Ratio
PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds ............... 0.0062 Ang.
PLAT360_ALERT_2_C Short C(sp3)-C(sp3) Bond C10 - C11 ... 1.43 Ang.
PLAT480_ALERT_4_C Long H...A H-Bond Reported H1C .. O1 .. 2.64 Ang.
PLAT480_ALERT_4_C Long H...A H-Bond Reported H13 .. O2 .. 2.63 Ang.
PLAT906_ALERT_3_C Large K value in the Analysis of Variance ...... 8.660 Check
PLAT906_ALERT_3_C Large K value in the Analysis of Variance ...... 2.310 Check
Alert level G
PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF Please Do !
PLAT066_ALERT_1_G Predicted and Reported Tmin&Tmax Range Identical ? Check
PLAT072_ALERT_2_G SHELXL First Parameter in WGHT Unusually Large. 0.11 Report
PLAT793_ALERT_4_G The Model has Chirality at C5 (Centro SPGR) R Verify
PLAT899_ALERT_4_G SHELXL97 is Deprecated and Succeeded by SHELXL 2014 Note
PLAT909_ALERT_3_G Percentage of Observed Data at Theta(Max) still 33 %
PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Th(Min) ... 1 Report
PLAT961_ALERT_5_G Dataset Contains no Negative Intensities ....... Please Check
1 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
7 ALERT level C = Check. Ensure it is not caused by an omission or oversight
8 ALERT level G = General information/check it is not something unexpected
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
6 ALERT type 3 Indicator that the structure quality may be low
4 ALERT type 4 Improvement, methodology, query or suggestion
2 ALERT type 5 Informative message, check
A mixture of 6-methyl-4-thiophen-2-yl-2-thioxo-1,2,3,4-tetrahydro-pyrimidine-5-
carboxylic acid ethyl ester (10 mmol) and 3-chloro-2,4-pentanedione (10 mmol)
was refluxed in dry ethanol (20 mmol) for 12 h. The excess of solvent was
distilled off and the solid hydrochloride salt that separated was collected by
filtration, suspended in water and neutralized by aqueous sodium carbonate
solution to yield the free base. The solution was filtered, the solid washed
with water, dried and recrystallized from ethyl acetate to give the title
compound (74% yield, mp 385 K). The compound was recrystallized by slow
evaporation from 1:1 mixture of ethyl acetate and methanol, yielding pale-
yellow blocks of the title compound.
The H atoms were placed at calculated positions in the riding-model
approximation with C—H = 0.95 Å, 1.00 Å and 0.96 Å for aromatic,
methyne and methyl H-atoms respectively, with Uiso(H) =
1.5Ueq(C) for methyl H atoms and Uiso(H) =
1.2Ueq(C) for other hydrogen atoms.
Data collection: SMART (Bruker,1998); cell refinement: SAINT-Plus (Bruker,1998); data reduction: SAINT-Plus (Bruker,1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and CAMERON (Watkin et al.,
1996); software used to prepare material for publication: WinGX (Farrugia, 2012).
Ethyl 2-acetyl-3,7-dimethyl-5-(thiophen-2-yl)-5
H-thiazolo[3,2-
a]pyrimidine-6-carboxylate
top
Crystal data top
C17H18N2O3S2 | F(000) = 760 |
Mr = 362.45 | Dx = 1.397 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3038 reflections |
a = 7.8835 (10) Å | θ = 2.6–25.0° |
b = 14.4041 (19) Å | µ = 0.33 mm−1 |
c = 15.231 (2) Å | T = 100 K |
β = 94.940 (4)° | Block, yellow |
V = 1723.2 (4) Å3 | 0.18 × 0.16 × 0.16 mm |
Z = 4 | |
Data collection top
Bruker SMART APEX CCD diffractometer | 3038 independent reflections |
Radiation source: fine-focus sealed tube | 1984 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ω scans | θmax = 25.0°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −9→9 |
Tmin = 0.944, Tmax = 0.950 | k = −17→17 |
12021 measured reflections | l = −17→18 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.189 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.1059P)2 + 1.4984P] where P = (Fo2 + 2Fc2)/3 |
3038 reflections | (Δ/σ)max < 0.001 |
221 parameters | Δρmax = 0.51 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
Crystal data top
C17H18N2O3S2 | V = 1723.2 (4) Å3 |
Mr = 362.45 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.8835 (10) Å | µ = 0.33 mm−1 |
b = 14.4041 (19) Å | T = 100 K |
c = 15.231 (2) Å | 0.18 × 0.16 × 0.16 mm |
β = 94.940 (4)° | |
Data collection top
Bruker SMART APEX CCD diffractometer | 3038 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 1984 reflections with I > 2σ(I) |
Tmin = 0.944, Tmax = 0.950 | Rint = 0.046 |
12021 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.065 | 0 restraints |
wR(F2) = 0.189 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.51 e Å−3 |
3038 reflections | Δρmin = −0.28 e Å−3 |
221 parameters | |
Special details top
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are
estimated using the full covariance matrix. The cell s.u.'s are taken into
account individually in the estimation of s.u.'s in distances, angles and
torsion angles; correlations between s.u.'s in cell parameters are only used
when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
2σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.41155 (14) | 0.67664 (8) | 0.10428 (8) | 0.0478 (4) | |
S2 | 0.86975 (15) | 0.38590 (8) | 0.30180 (7) | 0.0514 (4) | |
N1 | 0.6122 (4) | 0.5389 (2) | 0.11268 (19) | 0.0343 (8) | |
C6 | 0.5337 (5) | 0.3792 (3) | 0.1355 (2) | 0.0384 (10) | |
O1 | 0.8379 (4) | 0.7993 (2) | 0.0552 (2) | 0.0610 (9) | |
C9 | 0.4445 (5) | 0.5583 (3) | 0.1190 (2) | 0.0378 (10) | |
N2 | 0.3249 (4) | 0.5002 (3) | 0.1340 (2) | 0.0472 (9) | |
C3 | 0.7148 (5) | 0.6131 (3) | 0.0965 (2) | 0.0345 (9) | |
C13 | 0.6889 (5) | 0.5373 (3) | 0.2994 (2) | 0.0378 (10) | |
H13 | 0.6144 | 0.5869 | 0.2815 | 0.045* | |
O2 | 0.4904 (5) | 0.2161 (2) | 0.1141 (3) | 0.0753 (11) | |
C2 | 0.6282 (5) | 0.6938 (3) | 0.0902 (3) | 0.0386 (10) | |
C16 | 0.5843 (6) | 0.2820 (3) | 0.1255 (3) | 0.0482 (11) | |
C17 | 0.9012 (5) | 0.5964 (3) | 0.0884 (3) | 0.0521 (12) | |
H17A | 0.9151 | 0.5420 | 0.0511 | 1.000* | |
H17B | 0.9592 | 0.5855 | 0.1470 | 1.000* | |
H17C | 0.9508 | 0.6509 | 0.0618 | 1.000* | |
C12 | 0.7368 (5) | 0.4638 (3) | 0.2456 (2) | 0.0359 (9) | |
C7 | 0.3696 (6) | 0.4072 (3) | 0.1363 (3) | 0.0434 (10) | |
C5 | 0.6754 (5) | 0.4494 (3) | 0.1488 (2) | 0.0359 (9) | |
H5 | 0.7734 | 0.4286 | 0.1162 | 0.043* | |
C10 | 0.8235 (8) | 0.1808 (3) | 0.1127 (4) | 0.0683 (15) | |
H10A | 0.7431 | 0.1448 | 0.0724 | 0.082* | |
H10B | 0.9319 | 0.1866 | 0.0849 | 0.082* | |
C14 | 0.7725 (6) | 0.5240 (3) | 0.3865 (3) | 0.0499 (11) | |
H14 | 0.7602 | 0.5662 | 0.4335 | 0.060* | |
C4 | 0.6955 (6) | 0.7881 (3) | 0.0792 (3) | 0.0447 (11) | |
C1 | 0.2188 (6) | 0.3437 (3) | 0.1387 (3) | 0.0592 (13) | |
H1A | 0.1198 | 0.3796 | 0.1538 | 1.000* | |
H1B | 0.2444 | 0.2954 | 0.1832 | 1.000* | |
H1C | 0.1940 | 0.3149 | 0.0808 | 1.000* | |
C8 | 0.5863 (7) | 0.8697 (3) | 0.0997 (4) | 0.0686 (15) | |
H8A | 0.5407 | 0.8599 | 0.1569 | 1.000* | |
H8B | 0.4920 | 0.8758 | 0.0538 | 1.000* | |
H8C | 0.6552 | 0.9264 | 0.1019 | 1.000* | |
C15 | 0.8682 (6) | 0.4481 (3) | 0.3959 (3) | 0.0484 (11) | |
H15 | 0.9293 | 0.4306 | 0.4499 | 0.058* | |
O3 | 0.7530 (4) | 0.2735 (2) | 0.1262 (2) | 0.0560 (8) | |
C11 | 0.8530 (10) | 0.1323 (5) | 0.1948 (4) | 0.110 (3) | |
H11A | 0.8940 | 0.0694 | 0.1839 | 0.166* | |
H11B | 0.7466 | 0.1286 | 0.2235 | 0.166* | |
H11C | 0.9387 | 0.1656 | 0.2332 | 0.166* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0422 (7) | 0.0400 (7) | 0.0619 (7) | 0.0079 (5) | 0.0093 (5) | 0.0074 (5) |
S2 | 0.0591 (8) | 0.0471 (7) | 0.0467 (7) | 0.0086 (5) | −0.0026 (5) | 0.0011 (5) |
N1 | 0.0349 (19) | 0.0318 (18) | 0.0364 (18) | 0.0033 (15) | 0.0036 (14) | 0.0039 (14) |
C6 | 0.043 (2) | 0.038 (2) | 0.033 (2) | −0.0054 (19) | −0.0006 (17) | −0.0010 (17) |
O1 | 0.061 (2) | 0.047 (2) | 0.075 (2) | −0.0107 (16) | 0.0111 (18) | 0.0040 (16) |
C9 | 0.037 (2) | 0.039 (2) | 0.037 (2) | 0.0067 (19) | 0.0031 (17) | 0.0017 (18) |
N2 | 0.038 (2) | 0.048 (2) | 0.057 (2) | −0.0058 (18) | 0.0122 (17) | −0.0046 (18) |
C3 | 0.038 (2) | 0.036 (2) | 0.029 (2) | −0.0036 (19) | 0.0006 (16) | 0.0010 (16) |
C13 | 0.048 (2) | 0.035 (2) | 0.030 (2) | −0.0105 (18) | −0.0020 (18) | −0.0038 (17) |
O2 | 0.077 (3) | 0.041 (2) | 0.106 (3) | −0.0134 (19) | −0.006 (2) | −0.0007 (19) |
C2 | 0.041 (2) | 0.036 (2) | 0.039 (2) | −0.0001 (18) | 0.0054 (18) | 0.0045 (18) |
C16 | 0.062 (3) | 0.036 (2) | 0.045 (3) | −0.009 (2) | −0.005 (2) | −0.0013 (19) |
C17 | 0.036 (2) | 0.051 (3) | 0.070 (3) | 0.001 (2) | 0.008 (2) | 0.008 (2) |
C12 | 0.036 (2) | 0.031 (2) | 0.040 (2) | 0.0005 (17) | 0.0011 (17) | 0.0016 (17) |
C7 | 0.051 (3) | 0.039 (3) | 0.041 (2) | −0.006 (2) | 0.0069 (19) | 0.0014 (18) |
C5 | 0.042 (2) | 0.032 (2) | 0.034 (2) | 0.0055 (18) | 0.0034 (17) | −0.0009 (16) |
C10 | 0.085 (4) | 0.042 (3) | 0.078 (4) | 0.013 (3) | 0.008 (3) | −0.014 (3) |
C14 | 0.057 (3) | 0.051 (3) | 0.042 (2) | 0.000 (2) | 0.004 (2) | −0.009 (2) |
C4 | 0.055 (3) | 0.040 (2) | 0.039 (2) | −0.004 (2) | 0.003 (2) | 0.0020 (19) |
C1 | 0.051 (3) | 0.057 (3) | 0.070 (3) | −0.022 (2) | 0.013 (2) | 0.001 (2) |
C8 | 0.087 (4) | 0.038 (3) | 0.083 (4) | 0.008 (3) | 0.019 (3) | −0.005 (2) |
C15 | 0.052 (3) | 0.054 (3) | 0.038 (2) | −0.001 (2) | −0.0011 (19) | 0.003 (2) |
O3 | 0.060 (2) | 0.0390 (18) | 0.067 (2) | 0.0087 (15) | −0.0048 (16) | −0.0080 (15) |
C11 | 0.157 (7) | 0.091 (5) | 0.086 (5) | 0.063 (5) | 0.027 (4) | 0.017 (4) |
Geometric parameters (Å, º) top
S1—C9 | 1.736 (4) | C17—H17B | 0.9902 |
S1—C2 | 1.757 (4) | C17—H17C | 0.9902 |
S2—C15 | 1.692 (4) | C12—C5 | 1.525 (5) |
S2—C12 | 1.714 (4) | C7—C1 | 1.502 (6) |
N1—C9 | 1.363 (5) | C5—H5 | 1.0000 |
N1—C3 | 1.375 (5) | C10—C11 | 1.433 (7) |
N1—C5 | 1.471 (5) | C10—O3 | 1.467 (5) |
C6—C7 | 1.355 (6) | C10—H10A | 0.9900 |
C6—C16 | 1.468 (6) | C10—H10B | 0.9900 |
C6—C5 | 1.508 (6) | C14—C15 | 1.328 (6) |
O1—C4 | 1.221 (5) | C14—H14 | 0.9500 |
C9—N2 | 1.296 (5) | C4—C8 | 1.506 (6) |
N2—C7 | 1.385 (5) | C1—H1A | 0.9828 |
C3—C2 | 1.348 (5) | C1—H1B | 0.9828 |
C3—C17 | 1.505 (6) | C1—H1C | 0.9828 |
C13—C12 | 1.410 (5) | C8—H8A | 0.9913 |
C13—C14 | 1.442 (6) | C8—H8B | 0.9913 |
C13—H13 | 0.9500 | C8—H8C | 0.9913 |
O2—C16 | 1.207 (5) | C15—H15 | 0.9500 |
C2—C4 | 1.472 (6) | C11—H11A | 0.9800 |
C16—O3 | 1.335 (5) | C11—H11B | 0.9800 |
C17—H17A | 0.9902 | C11—H11C | 0.9800 |
| | | |
C9—S1—C2 | 91.04 (19) | C6—C5—C12 | 113.0 (3) |
C15—S2—C12 | 91.6 (2) | N1—C5—H5 | 109.1 |
C9—N1—C3 | 116.3 (3) | C6—C5—H5 | 109.1 |
C9—N1—C5 | 116.9 (3) | C12—C5—H5 | 109.1 |
C3—N1—C5 | 124.2 (3) | C11—C10—O3 | 110.9 (4) |
C7—C6—C16 | 123.5 (4) | C11—C10—H10A | 109.5 |
C7—C6—C5 | 119.8 (4) | O3—C10—H10A | 109.5 |
C16—C6—C5 | 116.7 (4) | C11—C10—H10B | 109.4 |
N2—C9—N1 | 127.2 (4) | O3—C10—H10B | 109.5 |
N2—C9—S1 | 123.7 (3) | H10A—C10—H10B | 108.0 |
N1—C9—S1 | 109.1 (3) | C15—C14—C13 | 114.8 (4) |
C9—N2—C7 | 116.2 (4) | C15—C14—H14 | 122.6 |
C2—C3—N1 | 112.4 (3) | C13—C14—H14 | 122.6 |
C2—C3—C17 | 128.6 (4) | O1—C4—C2 | 120.4 (4) |
N1—C3—C17 | 119.0 (3) | O1—C4—C8 | 121.0 (4) |
C12—C13—C14 | 108.1 (4) | C2—C4—C8 | 118.6 (4) |
C12—C13—H13 | 126.0 | C7—C1—H1A | 109.8 |
C14—C13—H13 | 125.9 | C7—C1—H1B | 109.7 |
C3—C2—C4 | 128.2 (4) | H1A—C1—H1B | 109.2 |
C3—C2—S1 | 111.2 (3) | C7—C1—H1C | 109.8 |
C4—C2—S1 | 120.5 (3) | H1A—C1—H1C | 109.2 |
O2—C16—O3 | 121.8 (4) | H1B—C1—H1C | 109.2 |
O2—C16—C6 | 126.6 (5) | C4—C8—H8A | 110.6 |
O3—C16—C6 | 111.5 (4) | C4—C8—H8B | 110.6 |
C3—C17—H17A | 110.5 | H8A—C8—H8B | 108.3 |
C3—C17—H17B | 110.5 | C4—C8—H8C | 110.6 |
H17A—C17—H17B | 108.4 | H8A—C8—H8C | 108.3 |
C3—C17—H17C | 110.5 | H8B—C8—H8C | 108.3 |
H17A—C17—H17C | 108.4 | C14—C15—S2 | 112.9 (3) |
H17B—C17—H17C | 108.4 | C14—C15—H15 | 123.5 |
C13—C12—C5 | 125.8 (3) | S2—C15—H15 | 123.5 |
C13—C12—S2 | 112.6 (3) | C16—O3—C10 | 118.1 (4) |
C5—C12—S2 | 121.6 (3) | C10—C11—H11A | 109.5 |
C6—C7—N2 | 121.9 (4) | C10—C11—H11B | 109.5 |
C6—C7—C1 | 125.3 (4) | H11A—C11—H11B | 109.5 |
N2—C7—C1 | 112.8 (4) | C10—C11—H11C | 109.5 |
N1—C5—C6 | 108.3 (3) | H11A—C11—H11C | 109.5 |
N1—C5—C12 | 108.2 (3) | H11B—C11—H11C | 109.5 |
| | | |
C3—N1—C9—N2 | −179.9 (4) | C5—C6—C7—N2 | 11.1 (6) |
C5—N1—C9—N2 | −17.4 (6) | C16—C6—C7—C1 | 8.2 (6) |
C3—N1—C9—S1 | −0.2 (4) | C5—C6—C7—C1 | −169.4 (4) |
C5—N1—C9—S1 | 162.2 (2) | C9—N2—C7—C6 | 9.1 (6) |
C2—S1—C9—N2 | 179.7 (4) | C9—N2—C7—C1 | −170.4 (4) |
C2—S1—C9—N1 | 0.0 (3) | C9—N1—C5—C6 | 33.4 (4) |
N1—C9—N2—C7 | −6.0 (6) | C3—N1—C5—C6 | −165.7 (3) |
S1—C9—N2—C7 | 174.4 (3) | C9—N1—C5—C12 | −89.4 (4) |
C9—N1—C3—C2 | 0.4 (5) | C3—N1—C5—C12 | 71.5 (4) |
C5—N1—C3—C2 | −160.6 (3) | C7—C6—C5—N1 | −31.2 (5) |
C9—N1—C3—C17 | −179.8 (3) | C16—C6—C5—N1 | 151.0 (3) |
C5—N1—C3—C17 | 19.2 (5) | C7—C6—C5—C12 | 88.6 (4) |
N1—C3—C2—C4 | 175.6 (4) | C16—C6—C5—C12 | −89.2 (4) |
C17—C3—C2—C4 | −4.2 (7) | C13—C12—C5—N1 | 20.6 (5) |
N1—C3—C2—S1 | −0.4 (4) | S2—C12—C5—N1 | −162.0 (3) |
C17—C3—C2—S1 | 179.8 (3) | C13—C12—C5—C6 | −99.3 (4) |
C9—S1—C2—C3 | 0.2 (3) | S2—C12—C5—C6 | 78.1 (4) |
C9—S1—C2—C4 | −176.1 (3) | C12—C13—C14—C15 | −1.3 (5) |
C7—C6—C16—O2 | 2.5 (7) | C3—C2—C4—O1 | 16.3 (7) |
C5—C6—C16—O2 | −179.8 (4) | S1—C2—C4—O1 | −168.1 (3) |
C7—C6—C16—O3 | 179.4 (4) | C3—C2—C4—C8 | −162.5 (4) |
C5—C6—C16—O3 | −2.8 (5) | S1—C2—C4—C8 | 13.1 (5) |
C14—C13—C12—C5 | 178.8 (4) | C13—C14—C15—S2 | 0.7 (5) |
C14—C13—C12—S2 | 1.3 (4) | C12—S2—C15—C14 | 0.1 (4) |
C15—S2—C12—C13 | −0.8 (3) | O2—C16—O3—C10 | −0.2 (6) |
C15—S2—C12—C5 | −178.5 (3) | C6—C16—O3—C10 | −177.3 (3) |
C16—C6—C7—N2 | −171.2 (4) | C11—C10—O3—C16 | −87.9 (6) |
Hydrogen-bond geometry (Å, º) topCg1 is the centroid of the S2/C12–C15 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1C···O1i | 0.98 | 2.64 | 3.598 (6) | 166 |
C13—H13···O2ii | 0.95 | 2.63 | 3.269 (8) | 125 |
C11—H11A···Cg1iii | 0.98 | 2.89 | 3.693 (2) | 139 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, y+1/2, −z+1/2; (iii) −x, −y+1, −z. |
Hydrogen-bond geometry (Å, º) topCg1 is the centroid of the S2/C12–C15 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1C···O1i | 0.98 | 2.64 | 3.598 (6) | 166 |
C13—H13···O2ii | 0.95 | 2.63 | 3.269 (8) | 125 |
C11—H11A···Cg1iii | 0.98 | 2.89 | 3.693 (2) | 139 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, y+1/2, −z+1/2; (iii) −x, −y+1, −z. |
Pyrimidine derivatives are important class of compounds which display number of pharmacological properties including antiviral, antitumour, antibacterial and antihypertensive effects (Atwal et al., 1991; Kappe et al., 1997). Pyrimidine has been subjected to a large variety of structural modifications in order to synthesize derivatives (Singh et al., 2011) with different biological properties, among which, thiazole ring fused to pyrimidine ring resulting in thiazolopyrimidine is found to be more active (Ozair et al., 2010; Hayam et al., 2010). Herein, we report the crystal structure of the title compound (1). The bond lengths and angles in the title compound are in good agreement with the corresponding bond distances and angles reported in closely related structures (Nagarajaiah et al., 2012; Prasad et al., 2014). The molecular structure of the compound C17H18N2O3S2 is shown in Fig. 1. The thiophenyl ring at chiral carbon C5 is positioned axially and exactly bisects the pyrimidine ring with a dihedral angle of 82.973 (1)°. The thiazine and pyrimidine ring form a dihedral angle of 5.975 (1)°. In the central pyrimidine ring, the chiral carbon atom C6 is displaced by 0.3130 (4) Å and adopts a flattened sofa conformation. The exocyclic ester group at C6 adopts cis orientation with respect to C6=C7 double bond and the carboxyl group (C11/C10/O3/C16) is slightly deviating from the thiozolopyrimidine plane at -87.946 (6)°. The crystal structure is mainly stabilized by a variety of intermolecular C—H···O interactions. C1—H1C···O1 hydrogen bonds link the molecules related by twofold rotation axes, forming R22(18) loops, which are in turn linked by C13—H13···O2 interactions to form chains of rings along [010] (Table.1; Fig. 2). In addition, weak C—H···π (thiophene) interactions of the type C11—H11A···Cg link the chains into layers parallel to [001] and π–π interactions between inversion-related thiazolopyrimidine rings with a centroid—centroid distance of 3.772 (10) Å connect these layers into a three-dimensional network (Fig. 3).