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The title compound, C13H13NO4 (also known as N-benzyl­oxycarbonyl-4-hy­droxy-L-proline lactone), crystallizes with two mol­ecules in the asymmetric unit. They have slightly different conformations: the fused ring systems almost overlap, but different C—O—C—C torsion angles for the central chains of −155.5 (2) and −178.6 (2)° lead to different twists for the terminal benzene ring. In the crystal, the mol­ecules are linked by C—H...O inter­actions, generating a three-dimensional network. The absolute structure was established based on an unchanging chiral centre in the synthesis.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989015010464/hb7435sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2056989015010464/hb7435Isup2.hkl
Contains datablock I

CCDC reference: 1402251

Key indicators

  • Single-crystal X-ray study
  • T = 90 K
  • Mean [sigma](C-C) = 0.002 Å
  • R factor = 0.027
  • wR factor = 0.073
  • Data-to-parameter ratio = 12.8

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT089_ALERT_3_C Poor Data / Parameter Ratio (Zmax < 18) ........ 6.85 Note PLAT230_ALERT_2_C Hirshfeld Test Diff for C1 -- C5 .. 5.4 su
Alert level G PLAT432_ALERT_2_G Short Inter X...Y Contact O3 .. C18 .. 2.99 Ang. PLAT791_ALERT_4_G The Model has Chirality at C1 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C3 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C14 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C16 (Chiral SPGR) S Verify PLAT909_ALERT_3_G Percentage of Observed Data at Theta(Max) still 95 %
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 2 ALERT level C = Check. Ensure it is not caused by an omission or oversight 6 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 4 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Chemical context top

Four possible stereoisomers exists for 4-hy­droxy­proline. The (2S,4R)-isomer is mainly found in collagen and its presence in collagen is a very important factor for its triple helix stabilization (Erdmann & Wennemers, 2011). Moreover (2S,4S)- of 4-hy­droxy­proline isomer was found to have anti­cancer activity (Dickens et al. 2008)

For related derivatives and synthesis see (Krishnamurthy et al. 2014, Gomez-Vidal and Silverman, 2001)

Synthesis and crystallization top

(I) was prepared in exactly the same manner as described by (Lombardo et al. 2012). To a solution of Z-Hyp-OH (3.0 g, 11.3 mmol) and tri­phenyl­phosphine (3.5 g, 13.3 mmol) in dry THF (50 mL) at 0 °C, was added DEAD (40% in toluene, 5.7 mL, 12.4 mmol), under argon. The resulting solution was warmed to room temperature and stirred. After 12 h, the solvent was evaporated to give a crude residue which was purified directly by flash chromatography on silica gel (EtOAc:hexane, 40:60, v/v) to give I as a white solid ( 2 g, 72 %). (1H NMR matched Lombardo et al. 2012)

Single crystals were obtained by vapour diffusion method at room temperature, i.e., pentane vapour was allowed to slowly diffuse into a EtOAc (0.3 ml) solution of I at room temperature. Single crystals were obtained after three days.

Refinement details top

Crystal data, data collection and structure refinement details are summarized in Table 1.

Related literature top

For biological background, see: Dickens et al. (2008); Erdmann & Wennemers (2011); Krishnamurthy et al. (2014); Gómez-Vidal & Silverman (2001). For the synthesis, see: Lombardo et al. (2012).

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.

Figures top
[Figure 1] Fig. 1. Molecular configuration for the title compound with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are omitted for clarity.
[Figure 2] Fig. 2. Crystal packing diagram of the title compound.
[Figure 3] Fig. 3. Synthetic scheme for the title compound (I)
(I) top
Crystal data top
C13H13NO4Z = 4
Mr = 247.24F(000) = 520
Monoclinic, P21Dx = 1.393 Mg m3
a = 11.212 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.8943 (16) ŵ = 0.10 mm1
c = 12.258 (2) ÅT = 90 K
β = 105.345 (2)°Prism, colorless
V = 1178.8 (4) Å30.40 × 0.35 × 0.30 mm
Data collection top
Bruker APEX II KY CCD
diffractometer
4157 independent reflections
Radiation source: fine-focus sealed tube4079 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 8.333 pixels mm-1θmax = 25.0°, θmin = 1.7°
ϕandω–scansh = 1313
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
k = 1010
Tmin = 0.709, Tmax = 0.969l = 1414
11252 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0404P)2 + 0.1656P]
where P = (Fo2 + 2Fc2)/3
4157 reflections(Δ/σ)max < 0.001
325 parametersΔρmax = 0.19 e Å3
1 restraintΔρmin = 0.16 e Å3
Crystal data top
C13H13NO4V = 1178.8 (4) Å3
Mr = 247.24Z = 4
Monoclinic, P21Mo Kα radiation
a = 11.212 (2) ŵ = 0.10 mm1
b = 8.8943 (16) ÅT = 90 K
c = 12.258 (2) Å0.40 × 0.35 × 0.30 mm
β = 105.345 (2)°
Data collection top
Bruker APEX II KY CCD
diffractometer
4157 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
4079 reflections with I > 2σ(I)
Tmin = 0.709, Tmax = 0.969Rint = 0.035
11252 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0271 restraint
wR(F2) = 0.073H-atom parameters constrained
S = 1.06Δρmax = 0.19 e Å3
4157 reflectionsΔρmin = 0.16 e Å3
325 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.03159 (12)0.45789 (16)0.37070 (12)0.0215 (3)
H10.02560.40190.310.026*
C20.02168 (13)0.52285 (17)0.46339 (12)0.0235 (3)
H2A0.08620.59680.43560.028*
H2B0.04930.44650.50770.028*
C30.10287 (13)0.59254 (17)0.52422 (12)0.0229 (3)
H30.10230.65070.5920.027*
C40.19041 (13)0.45866 (17)0.54550 (11)0.0229 (3)
H4A0.27540.48880.55350.027*
H4B0.18520.40180.61160.027*
C50.09010 (12)0.59924 (16)0.33634 (11)0.0210 (3)
C60.19212 (13)0.25806 (16)0.39927 (12)0.0218 (3)
C70.35825 (16)0.0823 (2)0.44690 (14)0.0356 (4)
H7A0.41760.11950.40830.043*
H7B0.30120.01540.39610.043*
C80.42360 (14)0.00050 (16)0.55255 (13)0.0265 (3)
C90.35980 (13)0.10101 (17)0.60196 (15)0.0319 (4)
H90.27650.11890.56830.038*
C100.41768 (15)0.17599 (18)0.70017 (15)0.0341 (4)
H100.37310.24250.73280.041*
C110.54297 (15)0.15203 (18)0.75052 (14)0.0310 (3)
H110.58280.20350.81610.037*
C120.60744 (13)0.05120 (18)0.70219 (13)0.0290 (3)
H120.69110.03490.73540.035*
C130.54857 (13)0.02589 (18)0.60467 (13)0.0281 (3)
H130.59260.0950.57370.034*
C140.96660 (12)0.95675 (15)0.18254 (11)0.0199 (3)
H140.99690.92910.26250.024*
C151.06237 (13)0.96354 (17)0.11437 (12)0.0228 (3)
H15A1.12621.03830.14210.027*
H15B1.09890.86660.10650.027*
C160.96511 (13)1.01286 (16)0.00832 (12)0.0230 (3)
H160.99691.03210.05750.028*
C170.86734 (13)0.88969 (16)0.00859 (11)0.0227 (3)
H17A0.78630.9260.04970.027*
H17B0.88920.80290.04720.027*
C180.90739 (12)1.11153 (16)0.15699 (11)0.0200 (3)
C190.81590 (12)0.74552 (15)0.15094 (12)0.0190 (3)
C200.66990 (14)0.54756 (16)0.09787 (12)0.0257 (3)
H20A0.61440.58760.13940.031*
H20B0.72420.47450.1450.031*
C210.59844 (12)0.47712 (16)0.01037 (12)0.0224 (3)
C220.47838 (13)0.52208 (17)0.06415 (13)0.0259 (3)
H220.43910.59360.03050.031*
C230.41709 (13)0.46052 (18)0.16784 (13)0.0280 (3)
H230.33650.490.20280.034*
C240.47492 (14)0.35578 (17)0.21940 (13)0.0293 (3)
H240.43390.31580.28940.035*
C250.59509 (15)0.31033 (18)0.16600 (14)0.0310 (3)
H250.63490.24040.20060.037*
C260.65512 (13)0.36930 (17)0.06153 (13)0.0262 (3)
H260.73440.33640.02510.031*
N10.13918 (11)0.37446 (13)0.43984 (10)0.0227 (3)
N20.87336 (11)0.85642 (14)0.11057 (9)0.0213 (2)
O10.10735 (9)0.63621 (12)0.24784 (8)0.0278 (2)
O20.13217 (9)0.68041 (11)0.43299 (8)0.0233 (2)
O30.15344 (9)0.20350 (13)0.30604 (9)0.0302 (2)
O40.29114 (9)0.20752 (12)0.47981 (8)0.0267 (2)
O50.85762 (8)1.19197 (12)0.21078 (8)0.0252 (2)
O60.91040 (9)1.14515 (11)0.04972 (8)0.0232 (2)
O70.82890 (8)0.71808 (11)0.25057 (8)0.0224 (2)
O80.74174 (9)0.66846 (11)0.06459 (8)0.0244 (2)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0192 (6)0.0193 (7)0.0234 (7)0.0006 (6)0.0013 (5)0.0015 (6)
C20.0206 (7)0.0251 (7)0.0246 (7)0.0012 (6)0.0055 (6)0.0036 (6)
C30.0257 (7)0.0239 (7)0.0195 (7)0.0011 (6)0.0068 (6)0.0003 (6)
C40.0246 (7)0.0232 (7)0.0200 (7)0.0005 (6)0.0043 (5)0.0000 (6)
C50.0185 (6)0.0229 (7)0.0204 (7)0.0071 (5)0.0031 (5)0.0010 (5)
C60.0188 (6)0.0196 (7)0.0268 (7)0.0004 (5)0.0056 (5)0.0016 (6)
C70.0374 (9)0.0358 (8)0.0343 (8)0.0174 (7)0.0109 (7)0.0006 (7)
C80.0245 (7)0.0228 (8)0.0325 (8)0.0074 (6)0.0081 (6)0.0035 (6)
C90.0171 (7)0.0253 (8)0.0502 (10)0.0003 (6)0.0031 (6)0.0034 (7)
C100.0282 (8)0.0255 (8)0.0497 (10)0.0006 (6)0.0123 (7)0.0060 (7)
C110.0278 (8)0.0301 (8)0.0329 (8)0.0075 (6)0.0042 (6)0.0019 (6)
C120.0172 (7)0.0322 (8)0.0360 (8)0.0036 (6)0.0041 (6)0.0069 (7)
C130.0242 (7)0.0253 (7)0.0383 (9)0.0007 (6)0.0144 (7)0.0027 (7)
C140.0181 (6)0.0208 (7)0.0198 (6)0.0006 (5)0.0032 (5)0.0009 (5)
C150.0201 (7)0.0227 (7)0.0262 (7)0.0004 (6)0.0073 (5)0.0026 (6)
C160.0262 (7)0.0216 (7)0.0239 (7)0.0022 (6)0.0111 (6)0.0007 (6)
C170.0253 (7)0.0238 (7)0.0183 (7)0.0008 (6)0.0047 (5)0.0011 (6)
C180.0147 (6)0.0220 (7)0.0225 (7)0.0046 (5)0.0034 (5)0.0025 (5)
C190.0149 (6)0.0178 (7)0.0238 (7)0.0030 (5)0.0043 (5)0.0001 (5)
C200.0267 (7)0.0222 (8)0.0284 (8)0.0069 (6)0.0075 (6)0.0006 (6)
C210.0213 (7)0.0200 (7)0.0266 (7)0.0057 (6)0.0077 (5)0.0017 (6)
C220.0224 (7)0.0222 (7)0.0345 (8)0.0009 (6)0.0103 (6)0.0006 (6)
C230.0174 (7)0.0278 (7)0.0362 (8)0.0019 (6)0.0028 (6)0.0057 (7)
C240.0284 (8)0.0271 (8)0.0295 (8)0.0064 (6)0.0026 (6)0.0028 (6)
C250.0298 (8)0.0269 (8)0.0376 (8)0.0013 (6)0.0112 (6)0.0057 (7)
C260.0178 (7)0.0252 (7)0.0350 (8)0.0008 (6)0.0061 (6)0.0018 (6)
N10.0230 (6)0.0191 (6)0.0225 (6)0.0033 (5)0.0001 (5)0.0003 (5)
N20.0221 (6)0.0216 (6)0.0182 (6)0.0028 (5)0.0016 (5)0.0011 (5)
O10.0283 (5)0.0338 (6)0.0224 (5)0.0082 (5)0.0086 (4)0.0067 (4)
O20.0272 (5)0.0203 (5)0.0220 (5)0.0007 (4)0.0058 (4)0.0011 (4)
O30.0254 (5)0.0293 (6)0.0332 (6)0.0024 (5)0.0028 (4)0.0082 (5)
O40.0253 (5)0.0249 (5)0.0288 (5)0.0079 (4)0.0052 (4)0.0010 (4)
O50.0210 (5)0.0265 (5)0.0280 (5)0.0002 (4)0.0060 (4)0.0053 (4)
O60.0266 (5)0.0192 (5)0.0239 (5)0.0018 (4)0.0068 (4)0.0018 (4)
O70.0207 (5)0.0234 (5)0.0226 (5)0.0002 (4)0.0049 (4)0.0023 (4)
O80.0253 (5)0.0230 (5)0.0239 (5)0.0070 (4)0.0048 (4)0.0011 (4)
Geometric parameters (Å, º) top
C1—N11.4776 (17)C14—N21.4763 (17)
C1—C51.528 (2)C14—C181.525 (2)
C1—C21.530 (2)C14—C151.5263 (19)
C1—H10.98C14—H140.98
C2—C31.530 (2)C15—C161.524 (2)
C2—H2A0.97C15—H15A0.97
C2—H2B0.97C15—H15B0.97
C3—O21.4710 (17)C16—O61.4775 (16)
C3—C41.521 (2)C16—C171.525 (2)
C3—H30.98C16—H160.98
C4—N11.4746 (18)C17—N21.4742 (18)
C4—H4A0.97C17—H17A0.97
C4—H4B0.97C17—H17B0.97
C5—O11.1973 (18)C18—O51.2053 (17)
C5—O21.3606 (17)C18—O61.3576 (17)
C6—O31.2113 (18)C19—O71.2158 (17)
C6—N11.3519 (19)C19—N21.3423 (18)
C6—O41.3526 (17)C19—O81.3475 (16)
C7—O41.4592 (18)C20—O81.4648 (16)
C7—C81.497 (2)C20—C211.494 (2)
C7—H7A0.97C20—H20A0.97
C7—H7B0.97C20—H20B0.97
C8—C91.387 (2)C21—C261.388 (2)
C8—C131.396 (2)C21—C221.392 (2)
C9—C101.379 (2)C22—C231.388 (2)
C9—H90.93C22—H220.93
C10—C111.393 (2)C23—C241.380 (2)
C10—H100.93C23—H230.93
C11—C121.380 (2)C24—C251.393 (2)
C11—H110.93C24—H240.93
C12—C131.385 (2)C25—C261.383 (2)
C12—H120.93C25—H250.93
C13—H130.93C26—H260.93
N1—C1—C5103.08 (11)C15—C14—H14116.7
N1—C1—C2100.58 (11)C16—C15—C1491.73 (10)
C5—C1—C2100.05 (11)C16—C15—H15A113.3
N1—C1—H1116.8C14—C15—H15A113.3
C5—C1—H1116.8C16—C15—H15B113.3
C2—C1—H1116.8C14—C15—H15B113.3
C3—C2—C191.69 (11)H15A—C15—H15B110.7
C3—C2—H2A113.3O6—C16—C15101.81 (10)
C1—C2—H2A113.3O6—C16—C17105.66 (10)
C3—C2—H2B113.3C15—C16—C17103.63 (11)
C1—C2—H2B113.3O6—C16—H16114.8
H2A—C2—H2B110.7C15—C16—H16114.8
O2—C3—C4106.41 (11)C17—C16—H16114.8
O2—C3—C2101.74 (11)N2—C17—C1699.60 (11)
C4—C3—C2103.34 (12)N2—C17—H17A111.9
O2—C3—H3114.6C16—C17—H17A111.9
C4—C3—H3114.6N2—C17—H17B111.9
C2—C3—H3114.6C16—C17—H17B111.9
N1—C4—C399.40 (11)H17A—C17—H17B109.6
N1—C4—H4A111.9O5—C18—O6122.20 (13)
C3—C4—H4A111.9O5—C18—C14131.54 (13)
N1—C4—H4B111.9O6—C18—C14106.07 (11)
C3—C4—H4B111.9O7—C19—N2125.19 (13)
H4A—C4—H4B109.6O7—C19—O8124.89 (12)
O1—C5—O2122.78 (14)N2—C19—O8109.92 (12)
O1—C5—C1131.28 (13)O8—C20—C21105.41 (11)
O2—C5—C1105.77 (11)O8—C20—H20A110.7
O3—C6—N1124.85 (13)C21—C20—H20A110.7
O3—C6—O4125.12 (13)O8—C20—H20B110.7
N1—C6—O4109.97 (12)C21—C20—H20B110.7
O4—C7—C8107.58 (12)H20A—C20—H20B108.8
O4—C7—H7A110.2C26—C21—C22119.05 (13)
C8—C7—H7A110.2C26—C21—C20119.26 (13)
O4—C7—H7B110.2C22—C21—C20121.62 (13)
C8—C7—H7B110.2C23—C22—C21120.20 (14)
H7A—C7—H7B108.5C23—C22—H22119.9
C9—C8—C13118.47 (14)C21—C22—H22119.9
C9—C8—C7120.22 (14)C24—C23—C22120.46 (14)
C13—C8—C7121.29 (14)C24—C23—H23119.8
C10—C9—C8121.21 (14)C22—C23—H23119.8
C10—C9—H9119.4C23—C24—C25119.60 (14)
C8—C9—H9119.4C23—C24—H24120.2
C9—C10—C11119.95 (15)C25—C24—H24120.2
C9—C10—H10120.0C26—C25—C24119.89 (15)
C11—C10—H10120.0C26—C25—H25120.1
C12—C11—C10119.38 (15)C24—C25—H25120.1
C12—C11—H11120.3C25—C26—C21120.76 (13)
C10—C11—H11120.3C25—C26—H26119.6
C11—C12—C13120.54 (14)C21—C26—H26119.6
C11—C12—H12119.7C6—N1—C4127.24 (12)
C13—C12—H12119.7C6—N1—C1123.02 (11)
C12—C13—C8120.43 (14)C4—N1—C1108.53 (11)
C12—C13—H13119.8C19—N2—C17127.75 (12)
C8—C13—H13119.8C19—N2—C14123.84 (11)
N2—C14—C18102.83 (10)C17—N2—C14108.07 (11)
N2—C14—C15100.74 (11)C5—O2—C3106.52 (11)
C18—C14—C15100.54 (11)C6—O4—C7115.82 (11)
N2—C14—H14116.7C18—O6—C16106.04 (10)
C18—C14—H14116.7C19—O8—C20115.16 (10)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C1—H1···O5i0.982.423.3493 (18)159
C2—H2A···O7ii0.972.463.2116 (18)134
C3—H3···O5iii0.982.373.2816 (18)155
C4—H4B···O7iii0.972.393.3408 (18)168
C15—H15A···O3iv0.972.443.1382 (19)128
C16—H16···O1v0.982.493.2207 (18)131
C26—H26···O6vi0.932.583.4584 (19)157
Symmetry codes: (i) x1, y1, z; (ii) x1, y, z; (iii) x+1, y1/2, z+1; (iv) x+1, y+1, z; (v) x+1, y+1/2, z; (vi) x, y1, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C1—H1···O5i0.982.423.3493 (18)159
C2—H2A···O7ii0.972.463.2116 (18)134
C3—H3···O5iii0.982.373.2816 (18)155
C4—H4B···O7iii0.972.393.3408 (18)168
C15—H15A···O3iv0.972.443.1382 (19)128
C16—H16···O1v0.982.493.2207 (18)131
C26—H26···O6vi0.932.583.4584 (19)157
Symmetry codes: (i) x1, y1, z; (ii) x1, y, z; (iii) x+1, y1/2, z+1; (iv) x+1, y+1, z; (v) x+1, y+1/2, z; (vi) x, y1, z.
 

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