The 4-pyridyl residues lie to either side of the central, planar C2N2O2 chromophore of the oxalamide molecule which has a + anti-periplanar conformation. Conventional hydrogen-bonding interactions lead to supramolecular tapes in the crystal.
Supporting information
CCDC reference: 1972449
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.034
- wR factor = 0.093
- Data-to-parameter ratio = 14.5
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C7 - C8 . 1.54 Ang.
Alert level G
PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 8 Note
PLAT154_ALERT_1_G The s.u.'s on the Cell Angles are Equal ..(Note) 0.002 Degree
PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 2 Report
PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 4 Note
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 30 Note
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 16 Info
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
1 ALERT level C = Check. Ensure it is not caused by an omission or oversight
6 ALERT level G = General information/check it is not something unexpected
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: CrysAlis PRO (Rigaku OD, 2018); cell refinement: CrysAlis PRO (Rigaku OD, 2018); data reduction: CrysAlis PRO (Rigaku OD, 2018); program(s) used to solve structure: SHELXS (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2017/1 (Sheldrick, 2015b); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012), DIAMOND (Brandenburg,
2006); software used to prepare material for publication: publCIF (Westrip, 2010).
N,
N'-bis(pyridin-4-ylmethyl)ethanediamide; bis(benzoic acid)
top
Crystal data top
C14H14N4O2·2C7H6O2 | Z = 2 |
Mr = 514.53 | F(000) = 540 |
Triclinic, P1 | Dx = 1.369 Mg m−3 |
a = 9.6543 (2) Å | Cu Kα radiation, λ = 1.54184 Å |
b = 9.9235 (2) Å | Cell parameters from 16947 reflections |
c = 14.1670 (3) Å | θ = 3.3–76.2° |
α = 100.755 (2)° | µ = 0.81 mm−1 |
β = 108.318 (2)° | T = 100 K |
γ = 95.617 (2)° | Prism, colourless |
V = 1247.90 (5) Å3 | 0.12 × 0.07 × 0.05 mm |
Data collection top
Rigaku XtaLAB Synergy Dualflex AtlasS2 diffractometer | 5220 independent reflections |
Radiation source: micro-focus sealed X-ray tube | 4736 reflections with I > 2σ(I) |
Detector resolution: 5.2558 pixels mm-1 | Rint = 0.031 |
ω scans | θmax = 76.4°, θmin = 3.4° |
Absorption correction: gaussian (CrysAlis PRO; Rigaku OD, 2018) | h = −12→12 |
Tmin = 0.832, Tmax = 1.000 | k = −12→12 |
31534 measured reflections | l = −17→17 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: mixed |
wR(F2) = 0.093 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0539P)2 + 0.3396P] where P = (Fo2 + 2Fc2)/3 |
5220 reflections | (Δ/σ)max = 0.001 |
359 parameters | Δρmax = 0.21 e Å−3 |
4 restraints | Δρmin = −0.28 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.11169 (8) | 0.35585 (8) | 0.52445 (6) | 0.02229 (17) | |
O2 | 0.49733 (8) | 0.39415 (8) | 0.58292 (6) | 0.02091 (16) | |
N1 | −0.09947 (10) | 0.21060 (9) | 0.09622 (7) | 0.02157 (19) | |
N2 | 0.25702 (9) | 0.46333 (9) | 0.45149 (6) | 0.01791 (18) | |
H2N | 0.3484 (10) | 0.4904 (14) | 0.4548 (10) | 0.024 (3)* | |
N3 | 0.35581 (9) | 0.31253 (9) | 0.66765 (6) | 0.01757 (18) | |
H3N | 0.2664 (11) | 0.2971 (14) | 0.6716 (11) | 0.025 (3)* | |
N4 | 0.75967 (10) | 0.62970 (10) | 0.97336 (7) | 0.0225 (2) | |
C1 | −0.14959 (11) | 0.32758 (11) | 0.12456 (8) | 0.0211 (2) | |
H1 | −0.240536 | 0.343746 | 0.080891 | 0.025* | |
C2 | −0.07474 (11) | 0.42577 (11) | 0.21457 (8) | 0.0198 (2) | |
H2 | −0.113267 | 0.507935 | 0.231404 | 0.024* | |
C3 | 0.05805 (11) | 0.40266 (11) | 0.28035 (8) | 0.0178 (2) | |
C4 | 0.11019 (11) | 0.28206 (11) | 0.25088 (8) | 0.0209 (2) | |
H4 | 0.200412 | 0.262855 | 0.293315 | 0.025* | |
C5 | 0.02905 (12) | 0.18954 (11) | 0.15858 (8) | 0.0226 (2) | |
H5 | 0.066421 | 0.107775 | 0.138881 | 0.027* | |
C6 | 0.13776 (11) | 0.50952 (11) | 0.37960 (8) | 0.0190 (2) | |
H6A | 0.178912 | 0.594422 | 0.363694 | 0.023* | |
H6B | 0.064816 | 0.535030 | 0.412815 | 0.023* | |
C7 | 0.23279 (11) | 0.39410 (10) | 0.51848 (7) | 0.0168 (2) | |
C8 | 0.37639 (11) | 0.36670 (10) | 0.59305 (7) | 0.0165 (2) | |
C9 | 0.47933 (11) | 0.27763 (11) | 0.74404 (8) | 0.0198 (2) | |
H9A | 0.539689 | 0.227162 | 0.709171 | 0.024* | |
H9B | 0.439995 | 0.214321 | 0.779400 | 0.024* | |
C10 | 0.57768 (11) | 0.40374 (10) | 0.82273 (7) | 0.0179 (2) | |
C11 | 0.51872 (12) | 0.50271 (12) | 0.87410 (9) | 0.0261 (2) | |
H11 | 0.414595 | 0.494664 | 0.858090 | 0.031* | |
C12 | 0.61289 (13) | 0.61374 (12) | 0.94915 (9) | 0.0274 (2) | |
H12 | 0.571438 | 0.680499 | 0.984407 | 0.033* | |
C13 | 0.81637 (12) | 0.53568 (12) | 0.92284 (8) | 0.0242 (2) | |
H13 | 0.920690 | 0.547791 | 0.938956 | 0.029* | |
C14 | 0.73011 (12) | 0.42117 (12) | 0.84793 (8) | 0.0224 (2) | |
H14 | 0.774771 | 0.355655 | 0.814404 | 0.027* | |
O3 | 0.55315 (9) | 1.14822 (8) | 0.95498 (6) | 0.02525 (18) | |
O4 | 0.72142 (9) | 1.01211 (8) | 0.94323 (6) | 0.02496 (18) | |
H4O | 0.778 (2) | 1.0790 (17) | 0.9921 (12) | 0.073 (6)* | |
C15 | 0.58610 (11) | 1.04164 (11) | 0.91631 (8) | 0.0187 (2) | |
C16 | 0.47533 (12) | 0.93433 (11) | 0.82989 (8) | 0.0190 (2) | |
C17 | 0.32865 (12) | 0.95458 (11) | 0.79630 (8) | 0.0212 (2) | |
H17 | 0.299289 | 1.032279 | 0.830770 | 0.025* | |
C18 | 0.22525 (12) | 0.86117 (12) | 0.71238 (9) | 0.0251 (2) | |
H18 | 0.125298 | 0.875244 | 0.689406 | 0.030* | |
C19 | 0.26769 (13) | 0.74743 (12) | 0.66210 (9) | 0.0277 (2) | |
H19 | 0.197060 | 0.684161 | 0.604343 | 0.033* | |
C20 | 0.41328 (14) | 0.72607 (12) | 0.69617 (9) | 0.0285 (3) | |
H20 | 0.442188 | 0.648021 | 0.661755 | 0.034* | |
C21 | 0.51726 (12) | 0.81880 (11) | 0.78076 (9) | 0.0234 (2) | |
H21 | 0.616527 | 0.803107 | 0.804782 | 0.028* | |
O5 | −0.16140 (8) | 0.74669 (8) | 0.22439 (6) | 0.02307 (17) | |
O6 | −0.03885 (9) | 0.80244 (9) | 0.12317 (6) | 0.02892 (19) | |
H6O | −0.1140 (19) | 0.747 (2) | 0.0769 (14) | 0.088 (8)* | |
C22 | −0.05202 (11) | 0.80401 (10) | 0.21249 (8) | 0.0187 (2) | |
C23 | 0.08033 (11) | 0.88364 (10) | 0.30063 (8) | 0.0180 (2) | |
C24 | 0.20594 (11) | 0.94266 (11) | 0.28499 (8) | 0.0192 (2) | |
H24 | 0.209182 | 0.931865 | 0.217699 | 0.023* | |
C25 | 0.32654 (12) | 1.01739 (11) | 0.36799 (8) | 0.0220 (2) | |
H25 | 0.412647 | 1.056907 | 0.357507 | 0.026* | |
C26 | 0.32108 (12) | 1.03425 (11) | 0.46627 (8) | 0.0238 (2) | |
H26 | 0.402958 | 1.086590 | 0.522807 | 0.029* | |
C27 | 0.19693 (13) | 0.97515 (12) | 0.48208 (8) | 0.0263 (2) | |
H27 | 0.193811 | 0.986854 | 0.549439 | 0.032* | |
C28 | 0.07667 (12) | 0.89864 (12) | 0.39969 (8) | 0.0234 (2) | |
H28 | −0.007838 | 0.856648 | 0.410794 | 0.028* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0163 (3) | 0.0268 (4) | 0.0250 (4) | 0.0018 (3) | 0.0078 (3) | 0.0085 (3) |
O2 | 0.0161 (3) | 0.0251 (4) | 0.0224 (4) | 0.0018 (3) | 0.0071 (3) | 0.0073 (3) |
N1 | 0.0217 (4) | 0.0236 (4) | 0.0177 (4) | 0.0029 (3) | 0.0053 (3) | 0.0035 (3) |
N2 | 0.0144 (4) | 0.0222 (4) | 0.0158 (4) | 0.0011 (3) | 0.0041 (3) | 0.0041 (3) |
N3 | 0.0153 (4) | 0.0199 (4) | 0.0159 (4) | 0.0001 (3) | 0.0042 (3) | 0.0037 (3) |
N4 | 0.0231 (4) | 0.0248 (5) | 0.0158 (4) | −0.0006 (4) | 0.0035 (3) | 0.0036 (3) |
C1 | 0.0189 (5) | 0.0246 (5) | 0.0190 (5) | 0.0039 (4) | 0.0040 (4) | 0.0072 (4) |
C2 | 0.0193 (5) | 0.0200 (5) | 0.0205 (5) | 0.0045 (4) | 0.0064 (4) | 0.0055 (4) |
C3 | 0.0171 (5) | 0.0206 (5) | 0.0168 (5) | 0.0014 (4) | 0.0068 (4) | 0.0058 (4) |
C4 | 0.0189 (5) | 0.0245 (5) | 0.0188 (5) | 0.0056 (4) | 0.0050 (4) | 0.0058 (4) |
C5 | 0.0241 (5) | 0.0230 (5) | 0.0207 (5) | 0.0072 (4) | 0.0072 (4) | 0.0039 (4) |
C6 | 0.0187 (5) | 0.0203 (5) | 0.0171 (5) | 0.0039 (4) | 0.0045 (4) | 0.0046 (4) |
C7 | 0.0166 (5) | 0.0166 (4) | 0.0151 (4) | 0.0012 (4) | 0.0048 (4) | 0.0008 (4) |
C8 | 0.0166 (4) | 0.0147 (4) | 0.0154 (4) | 0.0005 (3) | 0.0041 (4) | 0.0005 (4) |
C9 | 0.0199 (5) | 0.0194 (5) | 0.0178 (5) | 0.0021 (4) | 0.0033 (4) | 0.0051 (4) |
C10 | 0.0193 (5) | 0.0200 (5) | 0.0138 (4) | 0.0020 (4) | 0.0038 (4) | 0.0061 (4) |
C11 | 0.0174 (5) | 0.0309 (6) | 0.0248 (5) | 0.0033 (4) | 0.0044 (4) | −0.0005 (5) |
C12 | 0.0249 (5) | 0.0285 (6) | 0.0241 (5) | 0.0046 (4) | 0.0065 (4) | −0.0020 (4) |
C13 | 0.0171 (5) | 0.0319 (6) | 0.0211 (5) | 0.0005 (4) | 0.0041 (4) | 0.0058 (4) |
C14 | 0.0213 (5) | 0.0258 (5) | 0.0199 (5) | 0.0044 (4) | 0.0077 (4) | 0.0035 (4) |
O3 | 0.0264 (4) | 0.0233 (4) | 0.0216 (4) | 0.0062 (3) | 0.0047 (3) | −0.0006 (3) |
O4 | 0.0220 (4) | 0.0262 (4) | 0.0213 (4) | 0.0050 (3) | 0.0038 (3) | −0.0017 (3) |
C15 | 0.0226 (5) | 0.0211 (5) | 0.0139 (4) | 0.0036 (4) | 0.0071 (4) | 0.0057 (4) |
C16 | 0.0239 (5) | 0.0191 (5) | 0.0151 (5) | 0.0011 (4) | 0.0077 (4) | 0.0062 (4) |
C17 | 0.0250 (5) | 0.0207 (5) | 0.0196 (5) | 0.0028 (4) | 0.0091 (4) | 0.0067 (4) |
C18 | 0.0233 (5) | 0.0277 (6) | 0.0231 (5) | −0.0008 (4) | 0.0054 (4) | 0.0095 (4) |
C19 | 0.0312 (6) | 0.0246 (5) | 0.0219 (5) | −0.0066 (4) | 0.0061 (4) | 0.0030 (4) |
C20 | 0.0346 (6) | 0.0211 (5) | 0.0271 (6) | −0.0005 (5) | 0.0121 (5) | −0.0009 (4) |
C21 | 0.0249 (5) | 0.0216 (5) | 0.0238 (5) | 0.0025 (4) | 0.0096 (4) | 0.0042 (4) |
O5 | 0.0201 (4) | 0.0254 (4) | 0.0238 (4) | 0.0009 (3) | 0.0082 (3) | 0.0061 (3) |
O6 | 0.0266 (4) | 0.0374 (5) | 0.0158 (4) | −0.0093 (3) | 0.0058 (3) | −0.0004 (3) |
C22 | 0.0203 (5) | 0.0175 (5) | 0.0187 (5) | 0.0035 (4) | 0.0070 (4) | 0.0045 (4) |
C23 | 0.0203 (5) | 0.0158 (4) | 0.0174 (5) | 0.0041 (4) | 0.0055 (4) | 0.0038 (4) |
C24 | 0.0216 (5) | 0.0196 (5) | 0.0171 (5) | 0.0048 (4) | 0.0067 (4) | 0.0049 (4) |
C25 | 0.0192 (5) | 0.0218 (5) | 0.0233 (5) | 0.0023 (4) | 0.0053 (4) | 0.0050 (4) |
C26 | 0.0234 (5) | 0.0226 (5) | 0.0194 (5) | 0.0054 (4) | 0.0010 (4) | 0.0011 (4) |
C27 | 0.0315 (6) | 0.0310 (6) | 0.0156 (5) | 0.0068 (5) | 0.0072 (4) | 0.0042 (4) |
C28 | 0.0251 (5) | 0.0267 (5) | 0.0205 (5) | 0.0034 (4) | 0.0102 (4) | 0.0066 (4) |
Geometric parameters (Å, º) top
O1—C7 | 1.2270 (12) | C13—H13 | 0.9500 |
O2—C8 | 1.2312 (12) | C14—H14 | 0.9500 |
N1—C5 | 1.3395 (14) | O3—C15 | 1.2162 (13) |
N1—C1 | 1.3421 (14) | O4—C15 | 1.3197 (13) |
N2—C7 | 1.3336 (13) | O4—H4O | 0.860 (10) |
N2—C6 | 1.4538 (13) | C15—C16 | 1.4980 (14) |
N2—H2N | 0.881 (9) | C16—C21 | 1.3902 (15) |
N3—C8 | 1.3298 (13) | C16—C17 | 1.3929 (15) |
N3—C9 | 1.4570 (13) | C17—C18 | 1.3895 (15) |
N3—H3N | 0.883 (9) | C17—H17 | 0.9500 |
N4—C12 | 1.3346 (15) | C18—C19 | 1.3867 (17) |
N4—C13 | 1.3338 (15) | C18—H18 | 0.9500 |
C1—C2 | 1.3845 (15) | C19—C20 | 1.3869 (18) |
C1—H1 | 0.9500 | C19—H19 | 0.9500 |
C2—C3 | 1.3968 (14) | C20—C21 | 1.3935 (16) |
C2—H2 | 0.9500 | C20—H20 | 0.9500 |
C3—C4 | 1.3869 (15) | C21—H21 | 0.9500 |
C3—C6 | 1.5157 (14) | O5—C22 | 1.2237 (13) |
C4—C5 | 1.3906 (15) | O6—C22 | 1.3084 (13) |
C4—H4 | 0.9500 | O6—H6O | 0.865 (10) |
C5—H5 | 0.9500 | C22—C23 | 1.4991 (14) |
C6—H6A | 0.9900 | C23—C24 | 1.3932 (15) |
C6—H6B | 0.9900 | C23—C28 | 1.3955 (15) |
C7—C8 | 1.5402 (14) | C24—C25 | 1.3904 (15) |
C9—C10 | 1.5139 (14) | C24—H24 | 0.9500 |
C9—H9A | 0.9900 | C25—C26 | 1.3893 (16) |
C9—H9B | 0.9900 | C25—H25 | 0.9500 |
C10—C11 | 1.3861 (15) | C26—C27 | 1.3824 (17) |
C10—C14 | 1.3857 (15) | C26—H26 | 0.9500 |
C11—C12 | 1.3894 (16) | C27—C28 | 1.3899 (16) |
C11—H11 | 0.9500 | C27—H27 | 0.9500 |
C12—H12 | 0.9500 | C28—H28 | 0.9500 |
C13—C14 | 1.3857 (15) | | |
| | | |
C5—N1—C1 | 117.75 (9) | N4—C13—C14 | 123.03 (10) |
C7—N2—C6 | 121.82 (9) | N4—C13—H13 | 118.5 |
C7—N2—H2N | 119.7 (9) | C14—C13—H13 | 118.5 |
C6—N2—H2N | 118.1 (9) | C13—C14—C10 | 118.93 (10) |
C8—N3—C9 | 120.98 (9) | C13—C14—H14 | 120.5 |
C8—N3—H3N | 120.2 (9) | C10—C14—H14 | 120.5 |
C9—N3—H3N | 118.8 (9) | C15—O4—H4O | 108.5 (15) |
C12—N4—C13 | 118.30 (9) | O3—C15—O4 | 123.81 (9) |
N1—C1—C2 | 122.96 (10) | O3—C15—C16 | 122.06 (10) |
N1—C1—H1 | 118.5 | O4—C15—C16 | 114.08 (9) |
C2—C1—H1 | 118.5 | C21—C16—C17 | 119.87 (10) |
C1—C2—C3 | 119.25 (10) | C21—C16—C15 | 121.37 (10) |
C1—C2—H2 | 120.4 | C17—C16—C15 | 118.72 (9) |
C3—C2—H2 | 120.4 | C16—C17—C18 | 120.01 (10) |
C4—C3—C2 | 117.79 (9) | C16—C17—H17 | 120.0 |
C4—C3—C6 | 123.35 (9) | C18—C17—H17 | 120.0 |
C2—C3—C6 | 118.85 (9) | C19—C18—C17 | 120.12 (11) |
C3—C4—C5 | 119.32 (10) | C19—C18—H18 | 119.9 |
C3—C4—H4 | 120.3 | C17—C18—H18 | 119.9 |
C5—C4—H4 | 120.3 | C18—C19—C20 | 119.98 (10) |
N1—C5—C4 | 122.91 (10) | C18—C19—H19 | 120.0 |
N1—C5—H5 | 118.5 | C20—C19—H19 | 120.0 |
C4—C5—H5 | 118.5 | C19—C20—C21 | 120.18 (11) |
N2—C6—C3 | 114.41 (8) | C19—C20—H20 | 119.9 |
N2—C6—H6A | 108.7 | C21—C20—H20 | 119.9 |
C3—C6—H6A | 108.7 | C16—C21—C20 | 119.82 (11) |
N2—C6—H6B | 108.7 | C16—C21—H21 | 120.1 |
C3—C6—H6B | 108.7 | C20—C21—H21 | 120.1 |
H6A—C6—H6B | 107.6 | C22—O6—H6O | 108.4 (17) |
O1—C7—N2 | 125.93 (9) | O5—C22—O6 | 123.94 (9) |
O1—C7—C8 | 121.14 (9) | O5—C22—C23 | 122.33 (9) |
N2—C7—C8 | 112.92 (8) | O6—C22—C23 | 113.73 (9) |
O2—C8—N3 | 124.54 (9) | C24—C23—C28 | 119.83 (9) |
O2—C8—C7 | 121.86 (9) | C24—C23—C22 | 121.07 (9) |
N3—C8—C7 | 113.60 (9) | C28—C23—C22 | 119.10 (9) |
N3—C9—C10 | 113.22 (8) | C25—C24—C23 | 119.91 (10) |
N3—C9—H9A | 108.9 | C25—C24—H24 | 120.0 |
C10—C9—H9A | 108.9 | C23—C24—H24 | 120.0 |
N3—C9—H9B | 108.9 | C26—C25—C24 | 119.98 (10) |
C10—C9—H9B | 108.9 | C26—C25—H25 | 120.0 |
H9A—C9—H9B | 107.7 | C24—C25—H25 | 120.0 |
C11—C10—C14 | 117.99 (9) | C27—C26—C25 | 120.23 (10) |
C11—C10—C9 | 121.18 (9) | C27—C26—H26 | 119.9 |
C14—C10—C9 | 120.79 (9) | C25—C26—H26 | 119.9 |
C10—C11—C12 | 119.57 (10) | C26—C27—C28 | 120.18 (10) |
C10—C11—H11 | 120.2 | C26—C27—H27 | 119.9 |
C12—C11—H11 | 120.2 | C28—C27—H27 | 119.9 |
N4—C12—C11 | 122.16 (11) | C27—C28—C23 | 119.85 (10) |
N4—C12—H12 | 118.9 | C27—C28—H28 | 120.1 |
C11—C12—H12 | 118.9 | C23—C28—H28 | 120.1 |
| | | |
C5—N1—C1—C2 | −0.12 (16) | N4—C13—C14—C10 | 1.01 (17) |
N1—C1—C2—C3 | −0.91 (16) | C11—C10—C14—C13 | 0.07 (16) |
C1—C2—C3—C4 | 1.13 (15) | C9—C10—C14—C13 | −177.84 (10) |
C1—C2—C3—C6 | −178.91 (9) | O3—C15—C16—C21 | 174.45 (10) |
C2—C3—C4—C5 | −0.39 (15) | O4—C15—C16—C21 | −3.20 (14) |
C6—C3—C4—C5 | 179.65 (10) | O3—C15—C16—C17 | −3.13 (15) |
C1—N1—C5—C4 | 0.91 (16) | O4—C15—C16—C17 | 179.22 (9) |
C3—C4—C5—N1 | −0.66 (17) | C21—C16—C17—C18 | −1.48 (15) |
C7—N2—C6—C3 | −87.36 (12) | C15—C16—C17—C18 | 176.13 (9) |
C4—C3—C6—N2 | −12.00 (14) | C16—C17—C18—C19 | 0.20 (16) |
C2—C3—C6—N2 | 168.05 (9) | C17—C18—C19—C20 | 0.61 (17) |
C6—N2—C7—O1 | 3.86 (16) | C18—C19—C20—C21 | −0.12 (18) |
C6—N2—C7—C8 | −175.03 (8) | C17—C16—C21—C20 | 1.96 (16) |
C9—N3—C8—O2 | −1.50 (15) | C15—C16—C21—C20 | −175.59 (10) |
C9—N3—C8—C7 | 178.88 (8) | C19—C20—C21—C16 | −1.17 (17) |
O1—C7—C8—O2 | 173.94 (9) | O5—C22—C23—C24 | 177.14 (10) |
N2—C7—C8—O2 | −7.10 (13) | O6—C22—C23—C24 | −3.01 (14) |
O1—C7—C8—N3 | −6.43 (13) | O5—C22—C23—C28 | −2.98 (16) |
N2—C7—C8—N3 | 172.52 (8) | O6—C22—C23—C28 | 176.87 (10) |
C8—N3—C9—C10 | 75.45 (12) | C28—C23—C24—C25 | −0.63 (15) |
N3—C9—C10—C11 | 50.59 (14) | C22—C23—C24—C25 | 179.25 (9) |
N3—C9—C10—C14 | −131.57 (10) | C23—C24—C25—C26 | −0.63 (16) |
C14—C10—C11—C12 | −0.84 (17) | C24—C25—C26—C27 | 1.00 (16) |
C9—C10—C11—C12 | 177.05 (10) | C25—C26—C27—C28 | −0.10 (17) |
C13—N4—C12—C11 | 0.40 (18) | C26—C27—C28—C23 | −1.16 (17) |
C10—C11—C12—N4 | 0.64 (19) | C24—C23—C28—C27 | 1.52 (16) |
C12—N4—C13—C14 | −1.24 (17) | C22—C23—C28—C27 | −178.36 (10) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O2 | 0.88 (1) | 2.36 (1) | 2.7192 (12) | 105 (1) |
N3—H3N···O1 | 0.88 (1) | 2.36 (1) | 2.7154 (12) | 104 (1) |
O4—H4O···N1i | 0.86 (2) | 1.78 (2) | 2.6366 (12) | 177 (2) |
O6—H6O···N4ii | 0.86 (2) | 1.72 (2) | 2.5731 (13) | 169 (2) |
N2—H2N···O2iii | 0.88 (1) | 2.05 (1) | 2.8618 (12) | 152 (1) |
N3—H3N···O5iv | 0.88 (1) | 2.12 (1) | 2.8516 (12) | 140 (1) |
C1—H1···O3v | 0.95 | 2.58 | 3.2009 (14) | 124 |
C2—H2···O5 | 0.95 | 2.47 | 3.3602 (14) | 155 |
C6—H6B···O1iv | 0.99 | 2.41 | 3.3826 (14) | 166 |
C12—H12···O3vi | 0.95 | 2.36 | 3.3025 (15) | 171 |
Symmetry codes: (i) x+1, y+1, z+1; (ii) x−1, y, z−1; (iii) −x+1, −y+1, −z+1; (iv) −x, −y+1, −z+1; (v) x−1, y−1, z−1; (vi) −x+1, −y+2, −z+2. |
A summary of short interatomic contacts (Å) in (I)a topContact | Distance | Symmetry operation |
O2···H2Nb | 1.94 | 1 - x, 1 - y, 1 - z |
C1···H13 | 2.79 | -1 + x, y, -1 + z |
N1···H4Ob | 1.65 | -1 + x, -1 + y, -1 + z |
O3···H1 | 2.50 | 1 + x, 1 + y, 1 + z |
N4···H6Ob | 1.60 | 1 + x, y, 1 + z |
O5···H3Nb | 2.02 | -x, 1 - y, 1 - z |
O1···H28 | 2.57 | -x, 1 - y, 1 - z |
O1···H6B | 2.32 | -x, 1 - y, 1 - z |
C8···H20 | 2.61 | x, y, z |
C12···C21 | 3.39 | x, y, z |
C8···C26 | 3.35 | x, -1 + y, z |
O5···H2 | 2.35 | x, y, z |
O3···H9B | 2.56 | x, 1 + y, z |
C17···H9B | 2.69 | x, 1 + y, z |
O3···H12 | 2.23 | 1 - x, 2 - y, 2 - z |
C21···H25 | 2.62 | 1 - x, 2 - y, 1 - z |
C18···H27 | 2.67 | x, y, z |
O4···H24 | 2.58 | 1 - x, 2 - y, 1 - z |
Notes: (a) The interatomic distances are calculated in
Crystal Explorer 17 (Turner et al., 2017) whereby the
X—H
bond lengths are adjusted to their neutron values;
(b) these interactions correspond to conventional hydrogen bonds. |
A summary of interaction energies (kJ mol-1) calculated for (I) topContact | Eele | Epol | Edis | Erep | Etot | Symmetry operation |
N2—H2N···O2/ | | | | | | |
C13—H13···C1 | -60.9 | -14.6 | -58.5 | 82.5 | -75.2 | 1 - x, 1 - y, 1 - z |
O4—H4O···N1/ | | | | | | |
C1—H1···O3 | -90.7 | -21.3 | -13.0 | 118.0 | -50.1 | -1 + x, -1 + y, -1 + z |
O6—H6O···N4 | -95.2 | -22.2 | -11.3 | 134.4 | -43.9 | 1 + x, y, 1 + z |
N3—H3N···O5/ | | | | | | |
C28—H28···O1 | -32.8 | -8.6 | -16.1 | 30.3 | -36.3 | - x, 1 - y, 1 - z |
C6—H6B···O1 | -11.4 | -5.1 | -29.5 | 26.4 | -25.1 | - x, 1 - y, 1 - z |
C20—H20···C8/ | | | | | | |
C12···C21 | -5.8 | -1.5 | -32.7 | 23.8 | -21.0 | x, y, z |
C8···C26 | -3.7 | -1.0 | -31.9 | 21.1 | -19.4 | x, -1 + y, z |
C2—H2···O5 | -9.4 | -1.9 | -14.0 | 12.9 | -15.6 | x, y, z |
C9—H9B···O3/ | | | | | | |
C9—H9B···C17 | -6.0 | -2.2 | -17.3 | 13.5 | -14.7 | x, 1 + y, z |
C12—H12···O3 | -9.5 | -2.4 | -4.9 | 12.6 | -8.3 | 1 - x, 2 - y, 2 - z |
Selected geometric data, i.e. central C—C bond length, O—H···N and
NC—H···O(carbonyl) separations (Å) for 4LH2 in its co-crystals
with
carboxylic acids and salt with a carboxylate anion topCarboxylic acid (CA) | Symmetry of 4LH2 | C—C | O—H···N(pyridyl) | NC—H···O(carbonyl) | REFCODE | Reference |
1:1 co-crystal | | | | | | |
bis(carboxymethyl)urea | – | 1.53 (2) | 1.73 | 2.54 | CAJRAH | Nguyen et al. (2001) |
| | | 1.75 | 4.21 | | |
diglycineoxamide | 1 | 1.514 (5) | 1.74 | 3.11 | SEPSIP01 | Nguyen et al. (2001) |
poly(1,2-bis(2-carboxyethyl)tetra-1-en-3-yn-1,4-diyl | 1 | 1.537 (13) | 1.80 | 2.98 | DOVSIR | Curtis et al. (2005) |
| | | | | | |
2:1 co-crystal | | | | | | |
(4-nitrophenyl)acetic acid | 1 | 1.543 (2) | 1.57 | 2.72 | NAXMEG | Arman, Kaulgud et al. (2012) |
benzoic acid | – | 1.5401 (14) | 1.67 | 2.59 | – | This work |
| | | 1.72 | 3.46 | | |
2-methylbenzoic acid | 1 | 1.5356 (19) | 1.79 | 2.60 | WADXUX | Syed et al. (2016) |
acetic acida | 1 | 1.5397 (17) | 1.75 | 2.81 | GOQQIP | Tan & Tiekink (2019b) |
2-[(4-hydroxyphenyl)diazenyl]benzoic acidb | 1 | 1.542 (2) | 1.89 | – | AJEZEV | Arman et al. (2009) |
2,6-dinitrobenzoatec | 1 | 1.543 (3) | 1.96c | 2.51 | TIPGUW | Arman, Miller et al. (2012) |
Notes: (a) Characterized as a di-hydrate;
(b) hydroxy-O—N(pyridyl) hydrogen bond;
(c) salt with a pyridinium-N—H···O(carboxylate) hydrogen bond. |