
Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270105007274/hj1044sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S0108270105007274/hj1044Isup2.hkl |
CCDC reference: 275502
The title compound, (I), was produced in hydrothermal conditions. Cadmium nitrate tetrahydrate (0.119 g), 1,4-phenylenediacetic acid (97%, 0.040 g), 4-aminopyridine (98%, 0.020 g) and H2O (15 ml) were added to a teflon-lined steel autoclave vessel. The mixture was heated at 438 K for 3 d and then slowly cooled over a period of 2 d to room temperature. The resulting product consisted of white crystals of the title complex in 40% yield.
H atoms were included in calculated positions and their parameters were refined isotropically [C—H = 0.87 (5)–1.07 (5) Å, O—H = 0.71 (5)–0.94 (6) Å and N—H = 0.78 (6)–0.96 (6) Å].
Data collection: CrystalClear (Rigaku/MSC, 2001); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Siemens, 1994)?; software used to prepare material for publication: SHELXTL?.
[Cd(C10H8O4)(C5H6N2)2(H2O)]·2H2O | Dx = 1.624 Mg m−3 |
Mr = 546.85 | Melting point: not measured K |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 18.1668 (12) Å | Cell parameters from 5000 reflections |
b = 13.6273 (10) Å | θ = 3.1–27.5° |
c = 9.2692 (7) Å | µ = 1.03 mm−1 |
β = 102.998 (3)° | T = 293 K |
V = 2235.9 (3) Å3 | Prism, white |
Z = 4 | 0.30 × 0.16 × 0.15 mm |
F(000) = 1112 |
Mercury 70 (2x2 bin mode) diffractometer | 5117 independent reflections |
Radiation source: fine-focus sealed tube | 4579 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
Detector resolution: 14.6306 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
dtprofit.ref scans | h = −23→23 |
Absorption correction: multi-scan [empirical (using intensity measurements) from equivalent reflections (XEMP in SHELXTL; Siemens, 1994)] | k = −8→17 |
Tmin = 0.757, Tmax = 0.857 | l = −12→12 |
16963 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.148 | All H-atom parameters refined |
S = 1.07 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
5117 reflections | (Δ/σ)max < 0.001 |
393 parameters | Δρmax = 0.60 e Å−3 |
3 restraints | Δρmin = −0.51 e Å−3 |
[Cd(C10H8O4)(C5H6N2)2(H2O)]·2H2O | V = 2235.9 (3) Å3 |
Mr = 546.85 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 18.1668 (12) Å | µ = 1.03 mm−1 |
b = 13.6273 (10) Å | T = 293 K |
c = 9.2692 (7) Å | 0.30 × 0.16 × 0.15 mm |
β = 102.998 (3)° |
Mercury 70 (2x2 bin mode) diffractometer | 5117 independent reflections |
Absorption correction: multi-scan [empirical (using intensity measurements) from equivalent reflections (XEMP in SHELXTL; Siemens, 1994)] | 4579 reflections with I > 2σ(I) |
Tmin = 0.757, Tmax = 0.857 | Rint = 0.030 |
16963 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 3 restraints |
wR(F2) = 0.148 | All H-atom parameters refined |
S = 1.07 | Δρmax = 0.60 e Å−3 |
5117 reflections | Δρmin = −0.51 e Å−3 |
393 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.246375 (13) | 0.88862 (2) | 0.22610 (3) | 0.03511 (14) | |
O1 | 0.28542 (18) | 1.0281 (2) | 0.1002 (4) | 0.0549 (8) | |
O2 | 0.27566 (18) | 0.8925 (2) | −0.0260 (4) | 0.0489 (7) | |
O3 | 0.22066 (18) | 0.8988 (2) | 0.4661 (3) | 0.0480 (7) | |
O4 | 0.19881 (18) | 1.0415 (2) | 0.3567 (3) | 0.0547 (8) | |
O5 | 0.2493 (3) | 0.7174 (3) | 0.2193 (4) | 0.0823 (15) | |
H21 | 0.257 (3) | 0.673 (5) | 0.293 (6) | 0.064 (16)* | |
H22 | 0.241 (3) | 0.684 (4) | 0.159 (6) | 0.059 (17)* | |
O6 | 0.3027 (2) | 1.2222 (3) | 0.1582 (4) | 0.0623 (8) | |
H25 | 0.281 (2) | 1.237 (4) | 0.223 (4) | 0.063 (15)* | |
H26 | 0.310 (4) | 1.1630 (13) | 0.156 (9) | 0.11 (3)* | |
O7 | 0.2138 (2) | 1.2438 (3) | 0.3700 (4) | 0.0614 (8) | |
H23 | 0.190 (4) | 1.182 (4) | 0.353 (7) | 0.081 (19)* | |
H24 | 0.238 (2) | 1.253 (4) | 0.455 (2) | 0.10 (3)* | |
N1 | 0.6044 (3) | 0.8491 (5) | 0.4997 (6) | 0.0743 (14) | |
H3 | 0.620 (4) | 0.865 (5) | 0.587 (8) | 0.09 (2)* | |
H4 | 0.628 (3) | 0.817 (4) | 0.457 (7) | 0.075 (19)* | |
N2 | 0.37255 (19) | 0.8706 (3) | 0.3327 (4) | 0.0426 (8) | |
N3 | 0.12142 (19) | 0.8709 (2) | 0.1194 (4) | 0.0407 (7) | |
N4 | −0.1115 (2) | 0.8605 (4) | −0.0467 (6) | 0.0650 (12) | |
H9 | −0.128 (3) | 0.888 (3) | −0.126 (7) | 0.054 (16)* | |
H10 | −0.137 (3) | 0.835 (4) | 0.025 (6) | 0.066 (15)* | |
C1 | 0.4039 (3) | 0.8931 (4) | 0.4729 (5) | 0.0541 (12) | |
H1 | 0.371 (3) | 0.919 (4) | 0.521 (6) | 0.069 (16)* | |
C2 | 0.4798 (3) | 0.8870 (4) | 0.5325 (6) | 0.0594 (13) | |
H2 | 0.496 (4) | 0.916 (5) | 0.629 (8) | 0.10 (2)* | |
C3 | 0.5285 (2) | 0.8540 (4) | 0.4464 (5) | 0.0498 (10) | |
C4 | 0.4954 (2) | 0.8293 (3) | 0.3006 (4) | 0.0444 (9) | |
H5 | 0.527 (2) | 0.811 (3) | 0.237 (5) | 0.053 (12)* | |
C5 | 0.4196 (2) | 0.8374 (3) | 0.2509 (5) | 0.0470 (9) | |
H6 | 0.395 (3) | 0.814 (4) | 0.158 (6) | 0.065 (14)* | |
C6 | 0.0899 (3) | 0.8946 (3) | −0.0212 (5) | 0.0455 (10) | |
H7 | 0.124 (3) | 0.916 (4) | −0.077 (7) | 0.080 (18)* | |
C7 | 0.0133 (3) | 0.8916 (3) | −0.0813 (5) | 0.0508 (11) | |
H8 | −0.004 (3) | 0.924 (4) | −0.179 (6) | 0.055 (13)* | |
C8 | −0.0360 (2) | 0.8630 (3) | 0.0060 (5) | 0.0426 (9) | |
C9 | −0.0034 (2) | 0.8360 (3) | 0.1506 (5) | 0.0445 (9) | |
H11 | −0.035 (2) | 0.816 (3) | 0.209 (5) | 0.041 (11)* | |
C10 | 0.0734 (2) | 0.8418 (3) | 0.2014 (4) | 0.0436 (9) | |
H12 | 0.096 (2) | 0.816 (3) | 0.290 (4) | 0.030 (9)* | |
C11 | 0.29581 (18) | 0.9796 (3) | −0.0079 (4) | 0.0368 (8) | |
C12 | 0.3380 (2) | 1.0270 (3) | −0.1144 (4) | 0.0411 (8) | |
H13 | 0.327 (3) | 1.104 (3) | −0.118 (6) | 0.062 (16)* | |
H14 | 0.321 (2) | 0.995 (3) | −0.221 (5) | 0.040 (10)* | |
C13 | 0.42261 (18) | 1.0132 (3) | −0.0560 (4) | 0.0347 (7) | |
C14 | 0.4643 (2) | 1.0835 (3) | 0.0360 (5) | 0.0409 (8) | |
H16 | 0.438 (2) | 1.145 (3) | 0.062 (4) | 0.038 (10)* | |
C15 | 0.4583 (2) | 0.9310 (3) | −0.0902 (4) | 0.0401 (8) | |
H15 | 0.431 (3) | 0.884 (3) | −0.138 (6) | 0.052 (15)* | |
C16 | 0.19790 (18) | 0.9855 (3) | 0.4623 (4) | 0.0373 (8) | |
C17 | 0.1642 (2) | 1.0220 (3) | 0.5897 (4) | 0.0406 (8) | |
H17 | 0.179 (3) | 1.095 (3) | 0.607 (6) | 0.053 (14)* | |
H18 | 0.184 (3) | 0.981 (4) | 0.684 (6) | 0.069 (15)* | |
C18 | 0.07845 (18) | 1.0109 (3) | 0.5448 (3) | 0.0345 (7) | |
C19 | 0.0331 (2) | 1.0905 (3) | 0.4921 (5) | 0.0429 (9) | |
H19 | 0.061 (3) | 1.149 (4) | 0.489 (5) | 0.052 (13)* | |
C20 | 0.0449 (2) | 0.9202 (3) | 0.5525 (4) | 0.0406 (8) | |
H20 | 0.083 (2) | 0.865 (3) | 0.590 (4) | 0.029 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.03007 (19) | 0.0407 (2) | 0.0359 (2) | −0.00054 (9) | 0.01040 (12) | 0.00076 (10) |
O1 | 0.0634 (19) | 0.0514 (17) | 0.0618 (18) | 0.0035 (15) | 0.0389 (15) | −0.0013 (15) |
O2 | 0.0490 (17) | 0.0545 (18) | 0.0439 (16) | −0.0100 (13) | 0.0116 (14) | 0.0004 (12) |
O3 | 0.0426 (16) | 0.0612 (18) | 0.0425 (16) | 0.0138 (13) | 0.0146 (13) | −0.0010 (12) |
O4 | 0.0632 (19) | 0.0601 (19) | 0.0460 (15) | −0.0098 (15) | 0.0235 (13) | 0.0009 (14) |
O5 | 0.150 (5) | 0.0380 (19) | 0.046 (2) | 0.0062 (19) | −0.006 (2) | 0.0016 (16) |
O6 | 0.067 (2) | 0.063 (2) | 0.062 (2) | −0.0102 (18) | 0.0255 (17) | −0.0078 (18) |
O7 | 0.062 (2) | 0.065 (2) | 0.058 (2) | −0.0025 (17) | 0.0158 (16) | −0.0074 (18) |
N1 | 0.040 (2) | 0.106 (4) | 0.072 (3) | 0.018 (2) | −0.001 (2) | −0.011 (3) |
N2 | 0.0312 (16) | 0.056 (2) | 0.0416 (18) | 0.0051 (14) | 0.0097 (13) | 0.0024 (15) |
N3 | 0.0320 (16) | 0.0498 (18) | 0.0407 (18) | −0.0088 (14) | 0.0092 (13) | 0.0007 (14) |
N4 | 0.038 (2) | 0.086 (3) | 0.065 (3) | −0.010 (2) | −0.0020 (19) | 0.009 (3) |
C1 | 0.037 (2) | 0.085 (4) | 0.042 (2) | 0.009 (2) | 0.0123 (18) | −0.005 (2) |
C2 | 0.044 (3) | 0.089 (4) | 0.044 (2) | 0.009 (2) | 0.009 (2) | −0.006 (2) |
C3 | 0.038 (2) | 0.056 (2) | 0.054 (2) | 0.0126 (19) | 0.0070 (17) | 0.005 (2) |
C4 | 0.0405 (19) | 0.053 (2) | 0.043 (2) | 0.0119 (18) | 0.0174 (16) | 0.0094 (19) |
C5 | 0.040 (2) | 0.059 (3) | 0.043 (2) | 0.0092 (19) | 0.0109 (16) | 0.001 (2) |
C6 | 0.044 (2) | 0.058 (3) | 0.037 (2) | −0.0078 (18) | 0.0122 (17) | 0.0002 (17) |
C7 | 0.048 (2) | 0.062 (3) | 0.039 (2) | −0.0081 (19) | 0.0024 (18) | 0.0046 (18) |
C8 | 0.0347 (19) | 0.045 (2) | 0.045 (2) | −0.0081 (16) | 0.0034 (16) | −0.0056 (17) |
C9 | 0.0392 (19) | 0.049 (2) | 0.048 (2) | −0.0115 (18) | 0.0177 (16) | −0.0041 (19) |
C10 | 0.043 (2) | 0.051 (2) | 0.0353 (19) | −0.0084 (18) | 0.0050 (15) | 0.0039 (17) |
C11 | 0.0261 (15) | 0.047 (2) | 0.0382 (18) | 0.0026 (15) | 0.0089 (13) | 0.0067 (16) |
C12 | 0.0285 (16) | 0.057 (2) | 0.0402 (19) | 0.0005 (16) | 0.0117 (14) | 0.0103 (17) |
C13 | 0.0260 (15) | 0.0459 (19) | 0.0360 (17) | −0.0004 (14) | 0.0151 (13) | 0.0046 (15) |
C14 | 0.0347 (19) | 0.044 (2) | 0.048 (2) | 0.0030 (16) | 0.0179 (16) | −0.0071 (17) |
C15 | 0.0334 (18) | 0.044 (2) | 0.0439 (19) | −0.0041 (16) | 0.0101 (15) | −0.0121 (17) |
C16 | 0.0222 (15) | 0.056 (2) | 0.0359 (17) | −0.0018 (15) | 0.0101 (12) | −0.0042 (16) |
C17 | 0.0318 (17) | 0.053 (2) | 0.0384 (18) | 0.0005 (16) | 0.0116 (14) | −0.0029 (17) |
C18 | 0.0310 (16) | 0.048 (2) | 0.0277 (15) | 0.0031 (15) | 0.0127 (12) | 0.0011 (14) |
C19 | 0.0350 (19) | 0.042 (2) | 0.054 (2) | 0.0019 (16) | 0.0165 (17) | 0.0009 (18) |
C20 | 0.0326 (18) | 0.043 (2) | 0.048 (2) | 0.0109 (16) | 0.0129 (15) | 0.0103 (17) |
Cd1—O1 | 2.418 (3) | C4—C5 | 1.356 (6) |
Cd1—O2 | 2.511 (3) | C4—H5 | 0.95 (4) |
Cd1—O3 | 2.378 (3) | C5—H6 | 0.93 (5) |
Cd1—O4 | 2.651 (3) | C6—C7 | 1.378 (7) |
Cd1—O5 | 2.334 (4) | C6—H7 | 0.93 (6) |
Cd1—N2 | 2.296 (3) | C7—C8 | 1.391 (6) |
Cd1—N3 | 2.276 (3) | C7—H8 | 0.99 (5) |
O1—C11 | 1.250 (5) | C8—C9 | 1.388 (6) |
O2—C11 | 1.243 (5) | C9—C10 | 1.371 (5) |
O3—C16 | 1.250 (5) | C9—H11 | 0.92 (4) |
O4—C16 | 1.244 (5) | C10—H12 | 0.91 (4) |
O5—H21 | 0.90 (6) | C11—C12 | 1.523 (5) |
O5—H22 | 0.71 (5) | C12—C13 | 1.521 (5) |
O6—H25 | 0.814 (10) | C12—H13 | 1.07 (5) |
O6—H26 | 0.819 (10) | C12—H14 | 1.06 (4) |
O7—H23 | 0.94 (6) | C13—C14 | 1.388 (5) |
O7—H24 | 0.819 (10) | C13—C15 | 1.367 (5) |
N1—C3 | 1.356 (6) | C14—C15i | 1.395 (5) |
N1—H3 | 0.82 (7) | C14—H16 | 1.02 (4) |
N1—H4 | 0.78 (6) | C15—C14i | 1.395 (5) |
N2—C1 | 1.332 (6) | C15—H15 | 0.87 (5) |
N2—C5 | 1.342 (5) | C16—C17 | 1.529 (5) |
N3—C6 | 1.340 (6) | C17—C18 | 1.527 (5) |
N3—C10 | 1.340 (5) | C17—H17 | 1.04 (5) |
N4—C8 | 1.348 (6) | C17—H18 | 1.03 (5) |
N4—H9 | 0.82 (6) | C18—C19 | 1.383 (5) |
N4—H10 | 0.96 (6) | C18—C20 | 1.387 (5) |
C1—C2 | 1.367 (7) | C19—C20ii | 1.391 (5) |
C1—H1 | 0.89 (5) | C19—H19 | 0.95 (5) |
C2—C3 | 1.394 (7) | C20—C19ii | 1.391 (5) |
C2—H2 | 0.96 (7) | C20—H20 | 1.03 (4) |
C3—C4 | 1.391 (6) | ||
N3—Cd1—N2 | 167.79 (14) | N2—C5—C4 | 124.3 (4) |
N3—Cd1—O5 | 84.77 (14) | N2—C5—H6 | 114 (3) |
N2—Cd1—O5 | 83.02 (14) | C4—C5—H6 | 121 (3) |
N3—Cd1—O3 | 91.49 (12) | N3—C6—C7 | 123.9 (4) |
N2—Cd1—O3 | 89.47 (12) | N3—C6—H7 | 115 (4) |
O5—Cd1—O3 | 95.40 (12) | C7—C6—H7 | 121 (4) |
N3—Cd1—O1 | 104.22 (12) | C6—C7—C8 | 119.8 (4) |
N2—Cd1—O1 | 85.35 (12) | C6—C7—H8 | 116 (3) |
O5—Cd1—O1 | 139.58 (13) | C8—C7—H8 | 123 (3) |
O3—Cd1—O1 | 123.10 (10) | N4—C8—C9 | 121.4 (4) |
N3—Cd1—O2 | 89.84 (12) | N4—C8—C7 | 122.1 (4) |
N2—Cd1—O2 | 90.16 (12) | C9—C8—C7 | 116.5 (4) |
O5—Cd1—O2 | 89.13 (12) | C10—C9—C8 | 119.7 (4) |
O3—Cd1—O2 | 175.37 (10) | C10—C9—H11 | 123 (3) |
O1—Cd1—O2 | 52.27 (9) | C8—C9—H11 | 118 (3) |
N3—Cd1—O4 | 83.45 (11) | N3—C10—C9 | 124.4 (4) |
N2—Cd1—O4 | 106.49 (11) | N3—C10—H12 | 114 (2) |
O5—Cd1—O4 | 144.06 (13) | C9—C10—H12 | 121 (2) |
O3—Cd1—O4 | 51.23 (9) | O2—C11—O1 | 121.3 (3) |
O1—Cd1—O4 | 76.34 (11) | O2—C11—C12 | 119.6 (3) |
O2—Cd1—O4 | 124.60 (9) | O1—C11—C12 | 119.0 (4) |
C11—O1—Cd1 | 94.9 (2) | C13—C12—C11 | 109.5 (3) |
C11—O2—Cd1 | 90.7 (2) | C13—C12—H13 | 107 (3) |
C16—O3—Cd1 | 99.3 (2) | C11—C12—H13 | 109 (3) |
C16—O4—Cd1 | 86.6 (2) | C13—C12—H14 | 110 (2) |
Cd1—O5—H21 | 131 (4) | C11—C12—H14 | 110 (2) |
Cd1—O5—H22 | 132 (4) | H13—C12—H14 | 111 (4) |
H21—O5—H22 | 98 (6) | C15—C13—C14 | 119.0 (3) |
H25—O6—H26 | 112 (6) | C15—C13—C12 | 120.8 (3) |
H23—O7—H24 | 115 (6) | C14—C13—C12 | 120.2 (3) |
C3—N1—H3 | 116 (5) | C13—C14—C15i | 119.4 (3) |
C3—N1—H4 | 118 (5) | C13—C14—H16 | 119 (2) |
H3—N1—H4 | 123 (7) | C15i—C14—H16 | 121 (2) |
C1—N2—C5 | 116.2 (4) | C13—C15—C14i | 121.6 (4) |
C1—N2—Cd1 | 124.2 (3) | C13—C15—H15 | 118 (3) |
C5—N2—Cd1 | 119.6 (3) | C14i—C15—H15 | 120 (3) |
C6—N3—C10 | 115.6 (4) | O4—C16—O3 | 122.6 (3) |
C6—N3—Cd1 | 124.3 (3) | O4—C16—C17 | 119.1 (4) |
C10—N3—Cd1 | 119.9 (3) | O3—C16—C17 | 118.2 (3) |
C8—N4—H9 | 117 (4) | C18—C17—C16 | 108.6 (3) |
C8—N4—H10 | 111 (3) | C18—C17—H17 | 110 (3) |
H9—N4—H10 | 131 (5) | C16—C17—H17 | 108 (3) |
N2—C1—C2 | 123.5 (4) | C18—C17—H18 | 109 (3) |
N2—C1—H1 | 113 (4) | C16—C17—H18 | 111 (3) |
C2—C1—H1 | 123 (4) | H17—C17—H18 | 111 (4) |
C1—C2—C3 | 120.1 (5) | C19—C18—C20 | 118.9 (3) |
C1—C2—H2 | 115 (4) | C19—C18—C17 | 120.6 (4) |
C3—C2—H2 | 124 (4) | C20—C18—C17 | 120.5 (3) |
N1—C3—C4 | 121.6 (4) | C18—C19—C20ii | 120.6 (4) |
N1—C3—C2 | 122.1 (5) | C18—C19—H19 | 113 (3) |
C4—C3—C2 | 116.3 (4) | C20ii—C19—H19 | 127 (3) |
C5—C4—C3 | 119.6 (4) | C18—C20—C19ii | 120.5 (4) |
C5—C4—H5 | 122 (3) | C18—C20—H20 | 113 (2) |
C3—C4—H5 | 119 (3) | C19ii—C20—H20 | 126 (2) |
N3—Cd1—O3—C16 | −77.8 (2) | Cd1—O4—C16—O3 | 4.4 (4) |
N2—Cd1—O3—C16 | 114.3 (2) | Cd1—O4—C16—C17 | −172.6 (3) |
O5—Cd1—O3—C16 | −162.7 (2) | Cd1—O3—C16—O4 | −5.0 (4) |
O1—Cd1—O3—C16 | 30.2 (3) | Cd1—O3—C16—C17 | 172.0 (3) |
O2—Cd1—O3—C16 | 28.8 (11) | C1—N2—C5—C4 | −2.6 (7) |
O4—Cd1—O3—C16 | 2.5 (2) | Cd1—N2—C5—C4 | 176.1 (4) |
N3—Cd1—O2—C11 | 113.2 (2) | O2—C11—O1—Cd1 | 9.4 (4) |
N2—Cd1—O2—C11 | −79.0 (2) | C12—C11—O1—Cd1 | −167.1 (3) |
O5—Cd1—O2—C11 | −162.0 (2) | N3—Cd1—O1—C11 | −83.5 (2) |
O3—Cd1—O2—C11 | 6.5 (12) | N2—Cd1—O1—C11 | 88.8 (2) |
O1—Cd1—O2—C11 | 5.0 (2) | O5—Cd1—O1—C11 | 15.3 (3) |
O4—Cd1—O2—C11 | 31.3 (3) | O3—Cd1—O1—C11 | 175.1 (2) |
N2—Cd1—N3—C6 | −110.2 (6) | O2—Cd1—O1—C11 | −5.0 (2) |
O5—Cd1—N3—C6 | −109.3 (4) | O4—Cd1—O1—C11 | −163.0 (3) |
O3—Cd1—N3—C6 | 155.4 (3) | C6—N3—C10—C9 | −0.5 (6) |
O1—Cd1—N3—C6 | 30.6 (4) | Cd1—N3—C10—C9 | 174.9 (3) |
O2—Cd1—N3—C6 | −20.2 (3) | C5—N2—C1—C2 | 2.4 (7) |
O4—Cd1—N3—C6 | 104.7 (3) | Cd1—N2—C1—C2 | −176.3 (4) |
N2—Cd1—N3—C10 | 74.8 (6) | N3—C10—C9—C8 | −1.2 (7) |
O5—Cd1—N3—C10 | 75.6 (3) | N3—C6—C7—C8 | 0.2 (7) |
O3—Cd1—N3—C10 | −19.6 (3) | O2—C11—C12—C13 | −90.7 (4) |
O1—Cd1—N3—C10 | −144.4 (3) | O1—C11—C12—C13 | 85.9 (4) |
O2—Cd1—N3—C10 | 164.8 (3) | C10—C9—C8—N4 | −178.4 (5) |
O4—Cd1—N3—C10 | −70.3 (3) | C10—C9—C8—C7 | 2.3 (6) |
Cd1—O2—C11—O1 | −9.0 (4) | C6—C7—C8—N4 | 178.9 (5) |
Cd1—O2—C11—C12 | 167.4 (3) | C6—C7—C8—C9 | −1.8 (6) |
N3—Cd1—O4—C16 | 94.7 (2) | N2—C1—C2—C3 | −1.4 (8) |
N2—Cd1—O4—C16 | −78.0 (2) | N1—C3—C2—C1 | 178.4 (5) |
O5—Cd1—O4—C16 | 23.1 (3) | C4—C3—C2—C1 | 0.4 (8) |
O3—Cd1—O4—C16 | −2.5 (2) | N2—C5—C4—C3 | 1.7 (7) |
O1—Cd1—O4—C16 | −158.9 (3) | N1—C3—C4—C5 | −178.6 (5) |
O2—Cd1—O4—C16 | 180.0 (2) | C2—C3—C4—C5 | −0.5 (7) |
C10—N3—C6—C7 | 1.1 (6) | C19ii—C20—C18—C19 | 0.0 (6) |
Cd1—N3—C6—C7 | −174.1 (3) | C19ii—C20—C18—C17 | −178.3 (3) |
N3—Cd1—N2—C1 | −111.8 (6) | C11—C12—C13—C15 | 87.7 (4) |
O5—Cd1—N2—C1 | −112.7 (4) | C11—C12—C13—C14 | −90.8 (4) |
O3—Cd1—N2—C1 | −17.2 (4) | C20—C18—C19—C20ii | 0.0 (6) |
O1—Cd1—N2—C1 | 106.1 (4) | C17—C18—C19—C20ii | 178.3 (3) |
O2—Cd1—N2—C1 | 158.2 (4) | C14—C13—C15—C14i | −0.6 (6) |
O4—Cd1—N2—C1 | 31.8 (4) | C12—C13—C15—C14i | −179.1 (3) |
N3—Cd1—N2—C5 | 69.6 (6) | C15—C13—C14—C15i | 0.5 (6) |
O5—Cd1—N2—C5 | 68.7 (3) | C12—C13—C14—C15i | 179.1 (3) |
O3—Cd1—N2—C5 | 164.2 (3) | C19—C18—C17—C16 | −99.2 (4) |
O1—Cd1—N2—C5 | −72.5 (3) | C20—C18—C17—C16 | 79.1 (4) |
O2—Cd1—N2—C5 | −20.4 (3) | O4—C16—C17—C18 | 82.0 (4) |
O4—Cd1—N2—C5 | −146.8 (3) | O3—C16—C17—C18 | −95.1 (4) |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x, −y+2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H9···O4iii | 0.82 (6) | 2.44 (6) | 3.241 (6) | 170 (5) |
O5—H21···O2iv | 0.90 (6) | 1.86 (5) | 2.745 (5) | 166 (5) |
O5—H22···O3v | 0.71 (5) | 2.07 (5) | 2.782 (5) | 172 (6) |
N4—H10···O7vi | 0.96 (6) | 2.25 (6) | 3.168 (6) | 161 (5) |
N1—H4···O6vii | 0.78 (6) | 2.23 (6) | 3.015 (7) | 178 (6) |
O6—H26···O1 | 0.82 (1) | 1.94 (3) | 2.703 (5) | 156 (8) |
O6—H25···O7 | 0.81 (1) | 2.03 (2) | 2.825 (6) | 166 (5) |
O7—H23···O4 | 0.94 (6) | 1.92 (6) | 2.770 (5) | 149 (6) |
O7—H24···O6viii | 0.82 (1) | 2.01 (1) | 2.832 (6) | 177 (5) |
Symmetry codes: (iii) −x, −y+2, −z; (iv) x, −y+3/2, z+1/2; (v) x, −y+3/2, z−1/2; (vi) −x, y−1/2, −z+1/2; (vii) −x+1, y−1/2, −z+1/2; (viii) x, −y+5/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C10H8O4)(C5H6N2)2(H2O)]·2H2O |
Mr | 546.85 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 18.1668 (12), 13.6273 (10), 9.2692 (7) |
β (°) | 102.998 (3) |
V (Å3) | 2235.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.03 |
Crystal size (mm) | 0.30 × 0.16 × 0.15 |
Data collection | |
Diffractometer | Mercury 70 (2x2 bin mode) diffractometer |
Absorption correction | Multi-scan [empirical (using intensity measurements) from equivalent reflections (XEMP in SHELXTL; Siemens, 1994)] |
Tmin, Tmax | 0.757, 0.857 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16963, 5117, 4579 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.148, 1.07 |
No. of reflections | 5117 |
No. of parameters | 393 |
No. of restraints | 3 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.60, −0.51 |
Computer programs: CrystalClear (Rigaku/MSC, 2001), CrystalClear, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Siemens, 1994)?, SHELXTL?.
Cd1—O1 | 2.418 (3) | Cd1—N3 | 2.276 (3) |
Cd1—O2 | 2.511 (3) | O1—C11 | 1.250 (5) |
Cd1—O3 | 2.378 (3) | O2—C11 | 1.243 (5) |
Cd1—O4 | 2.651 (3) | O3—C16 | 1.250 (5) |
Cd1—O5 | 2.334 (4) | O4—C16 | 1.244 (5) |
Cd1—N2 | 2.296 (3) | ||
N3—Cd1—O3 | 91.49 (12) | O5—Cd1—O2 | 89.13 (12) |
N2—Cd1—O3 | 89.47 (12) | O1—Cd1—O2 | 52.27 (9) |
O5—Cd1—O3 | 95.40 (12) | O3—Cd1—O4 | 51.23 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H9···O4i | 0.82 (6) | 2.44 (6) | 3.241 (6) | 170 (5) |
O5—H21···O2ii | 0.90 (6) | 1.86 (5) | 2.745 (5) | 166 (5) |
O5—H22···O3iii | 0.71 (5) | 2.07 (5) | 2.782 (5) | 172 (6) |
N4—H10···O7iv | 0.96 (6) | 2.25 (6) | 3.168 (6) | 161 (5) |
N1—H4···O6v | 0.78 (6) | 2.23 (6) | 3.015 (7) | 178 (6) |
O6—H26···O1 | 0.819 (10) | 1.94 (3) | 2.703 (5) | 156 (8) |
O6—H25···O7 | 0.814 (10) | 2.028 (17) | 2.825 (6) | 166 (5) |
O7—H23···O4 | 0.94 (6) | 1.92 (6) | 2.770 (5) | 149 (6) |
O7—H24···O6vi | 0.819 (10) | 2.014 (12) | 2.832 (6) | 177 (5) |
Symmetry codes: (i) −x, −y+2, −z; (ii) x, −y+3/2, z+1/2; (iii) x, −y+3/2, z−1/2; (iv) −x, y−1/2, −z+1/2; (v) −x+1, y−1/2, −z+1/2; (vi) x, −y+5/2, z+1/2. |
Various rigid benzenedicarboxylic acids, such as 1,2-benzenedicarboxylic acid and 1,4-benzenedicarboxylic acid, which have been demonstrated to be excellent candidates for bridging metal centers and metal clusters and form architectures of various dimensions, have been used in numerous reactions to produce metal-organic frameworks (Li et al., 2004). However, phenylenediacetic acids, for example, 1,4-phenylenediacetic acid (H2PDA), derived from benzenedicarboxylic acid, have more flexible carboxylic acid groups which do not tend to take part in reactions; hence, there are only a few examples of polymeric compounds containing these acids (Pan et al., 2003). In this context, we introduced a secondary building unit (4-aminopyridine) for the design of metal-organic carboxylate frameworks, to improve the activity of the carboxylate group coordination with transition metal ions. Remarkably and fortunately, a three-dimensional complex was obtained containing the two ligands. The other significant observation is that free water molecules form hydrogen-bonded chains in the structure, a phenomenon that is of current interest (Ghosh & Bharadwaj, 2004).
As shown in Fig. 1, the chain consists of [CdII(4-aminopyridine)(PDA)H2O] building blocks that are linked head-to-tail by PDA2− ligands through M—O bonds. The Cd atom has a distorted decahedral environment, with the equatorial plane occupied by five O atoms, four (O1, O2, O3 and O4) from two deprotonated PDA2− molecules and one (O5) from the coordinated water molecule. Two N atoms from two 4-aminopyridine molecules fill the two axial positions, with bond lengths of 2.276 (3) Å (Cd—N3) and 2.296 (3) Å (Cd—N2). The 4-aminopyridine ligand uses its pyridine ring N atom to coordinate with the metal ion and its amine N atom is uncoordinated. The two deprotonated PDA2− moieties act as bridges, linking three CdII ions through carboxylate groups and using their carboxylate groups to chelate with CdII ions. The M—O(PDA2−) distances range from 2.378 (2) to 2.651 (3) Å. The M—Owater distance is 2.335 (3) Å. Hence, each metal centre connects two PDA2− ligands to form a one-dimensional chain in a step-like shape with metal–metal distances of 11.644 (s.u.?) Å.
In the structure, different kinds of hydrogen bonds are observed: (i) hydrogen bonds between free water molecules [O6···O7 = 2.827 (5) Å], (ii) hydrogen bonding of free water and carboxyl O atoms [O7···O4 = 2.771 (5) Å], (iii) hydrogen bonding of coordinated water and carboxyl O atoms [O5···O2 = 2.745 (4) Å and O5···O3 = 2.780 (4) Å], (iv) hydrogen bonding between the amine N atoms in the 4-aminopyridine molecules and free water molecules [N4···O7 = 3.178 (5) Å and N1···O6 = 3.020 (6) Å], and (v) hydrogen bonding betweem the amine N atoms and carboxyl O atoms [N4···O4 = 3.234 (5) Å]. Through these hydrogen-bonding interactions, each CdII polymer chain links to other chains to form a three-dimensional structure (Fig. 2a) in a layer-chain grid construction (for clarity, 4-aminopyridine molecules were omitted from the plot). These central parts are linked by hydrogen bonds to form two-dimensional layers (Fig. 2b). The supramolecular layers are connected by the PDA2− molecules of the step-like chains (Fig. 2a) to form the final three-dimensional supramolecular structure. Moreover, the uncoordinated amine N atoms of 4-aminepyridine molecules are hydrogen-bonded to O atoms of water molecules and carboxyl groups to stabilize the conformation.
Free water molecules play an interesting role in the structure, forming infinite chains by supramolecular assembly (Fig. 3). Through hydrogen bonds, the water chains further organize the coordination polymer chains to distribute alternately side by side and constitute the two-dimensional structure (Fig. 2b).