Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810043977/hy2367sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810043977/hy2367Isup2.hkl |
CCDC reference: 799509
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (N-C) = 0.003 Å
- R factor = 0.017
- wR factor = 0.044
- Data-to-parameter ratio = 21.7
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Cd1 -- S1 .. 9.97 su
Alert level G PLAT794_ALERT_5_G Note: Tentative Bond Valency for Cd1 ....... 2.03
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
A mixture containing 0.005 mmol of Cd(NO3)2.4H2O and 0.010 mmol of dimethyldithiocarbamic acid was placed in a small vial containing MeOH (3.0 ml), DMF (1.0 ml) and H2O (0.5 ml). The vial was sealed, heated at 373 K for 2 d and allowed to cool to room temperature. Colorless crystals suitable for X-ray diffraction were collected and dried in air (yield: 50%).
H atoms were placed in calculated positions and treated using a riding model, with C—H = 0.98 Å and with Uiso(H) = 1.5Ueq(C).
Rapid development of metal–organic frameworks has been made in recent years not only for their potential applications in materials science but also for fascinating architectures and topologies (Kitagawa et al., 2006; Papaefstathiou & MacGillivray, 2003; Yaghi et al., 1998). Dimethyldithiocarbamic acid is widely used in latex industry. Its natrium, zinc and copper salts are applied widely in antimicrobial, antisepsis and accelerant (Einstein & Field, 1974; Oskarsson & Ymén, 1983). Meanwhile, dimethyldithiocarbamic acid, possessing two S atoms, is a good candidate to coordinate metal atoms and generates rich hydrogen bonding modes. Herein we report the preparation and characterization of the first cadmium complex of dimethyldithiocarbamic acid.
In the title complex, the CdII ion is coordinated in an octahedral geometry by six S atoms from four different dimethyldithiocarbamate ligands (Fig. 1), with the Cd—S distances ranging from 2.6255 (7) to 2.7909 (6) Å (Table 1). Through the bridging of S2 atoms, the title complex forms a one-dimensional structure (Fig. 2).
For general background to metal–organic frameworks, see: Kitagawa et al. (2006); Papaefstathiou & MacGillivray (2003); Yaghi et al. (1998). For the natrium, zinc and copper salts of dimethyldithiocarbamate, see: Einstein & Field (1974); Oskarsson & Ymén (1983).
Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
[Cd(C3H6NS2)2] | F(000) = 696 |
Mr = 352.82 | Dx = 1.988 Mg m−3 |
Orthorhombic, Pccn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ab 2ac | Cell parameters from 4468 reflections |
a = 10.055 (2) Å | θ = 2.5–27.6° |
b = 14.744 (3) Å | µ = 2.52 mm−1 |
c = 7.9518 (17) Å | T = 296 K |
V = 1178.9 (4) Å3 | Block, colorless |
Z = 4 | 0.54 × 0.22 × 0.17 mm |
Bruker APEXII CCD diffractometer | 1370 independent reflections |
Radiation source: fine-focus sealed tube | 1221 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
φ and ω scans | θmax = 27.6°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→13 |
Tmin = 0.519, Tmax = 0.652 | k = −16→19 |
9543 measured reflections | l = −10→10 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.017 | H-atom parameters constrained |
wR(F2) = 0.044 | w = 1/[σ2(Fo2) + (0.0174P)2 + 0.6307P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
1370 reflections | Δρmax = 0.29 e Å−3 |
63 parameters | Δρmin = −0.34 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0036 (3) |
[Cd(C3H6NS2)2] | V = 1178.9 (4) Å3 |
Mr = 352.82 | Z = 4 |
Orthorhombic, Pccn | Mo Kα radiation |
a = 10.055 (2) Å | µ = 2.52 mm−1 |
b = 14.744 (3) Å | T = 296 K |
c = 7.9518 (17) Å | 0.54 × 0.22 × 0.17 mm |
Bruker APEXII CCD diffractometer | 1370 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1221 reflections with I > 2σ(I) |
Tmin = 0.519, Tmax = 0.652 | Rint = 0.030 |
9543 measured reflections |
R[F2 > 2σ(F2)] = 0.017 | 0 restraints |
wR(F2) = 0.044 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.29 e Å−3 |
1370 reflections | Δρmin = −0.34 e Å−3 |
63 parameters |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.7500 | 0.2500 | 0.17288 (2) | 0.03178 (9) | |
S1 | 0.49818 (5) | 0.28596 (4) | 0.11658 (7) | 0.04016 (14) | |
S2 | 0.71139 (5) | 0.37665 (3) | −0.08336 (6) | 0.03093 (12) | |
N1 | 0.45119 (16) | 0.39753 (11) | −0.1396 (2) | 0.0335 (4) | |
C1 | 0.54274 (18) | 0.35704 (12) | −0.0449 (2) | 0.0279 (4) | |
C2 | 0.3088 (2) | 0.38157 (18) | −0.1150 (3) | 0.0473 (5) | |
H2A | 0.2952 | 0.3465 | −0.0118 | 0.071* | |
H2B | 0.2734 | 0.3477 | −0.2112 | 0.071* | |
H2C | 0.2626 | 0.4399 | −0.1057 | 0.071* | |
C3 | 0.4855 (2) | 0.45777 (16) | −0.2802 (3) | 0.0481 (5) | |
H3A | 0.5549 | 0.5003 | −0.2446 | 0.072* | |
H3B | 0.4063 | 0.4917 | −0.3151 | 0.072* | |
H3C | 0.5181 | 0.4215 | −0.3749 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.02789 (12) | 0.04207 (14) | 0.02537 (12) | 0.00462 (8) | 0.000 | 0.000 |
S1 | 0.0295 (2) | 0.0507 (3) | 0.0403 (3) | 0.0030 (2) | 0.0035 (2) | 0.0156 (2) |
S2 | 0.0294 (2) | 0.0340 (2) | 0.0294 (2) | −0.00350 (18) | −0.00062 (18) | −0.00097 (18) |
N1 | 0.0323 (8) | 0.0348 (9) | 0.0333 (8) | 0.0051 (7) | −0.0036 (7) | 0.0015 (7) |
C1 | 0.0298 (9) | 0.0284 (9) | 0.0256 (9) | 0.0017 (7) | −0.0001 (7) | −0.0039 (7) |
C2 | 0.0331 (11) | 0.0580 (14) | 0.0509 (13) | 0.0091 (10) | −0.0074 (10) | 0.0033 (11) |
C3 | 0.0544 (13) | 0.0434 (12) | 0.0466 (12) | 0.0058 (10) | −0.0070 (11) | 0.0154 (10) |
Cd1—S1 | 2.6255 (7) | N1—C3 | 1.469 (3) |
Cd1—S2 | 2.7909 (6) | C2—H2A | 0.9800 |
Cd1—S2i | 2.7194 (6) | C2—H2B | 0.9800 |
S1—C1 | 1.7169 (19) | C2—H2C | 0.9800 |
S2—C1 | 1.7473 (19) | C3—H3A | 0.9800 |
S2—Cd1ii | 2.7194 (6) | C3—H3B | 0.9800 |
N1—C1 | 1.331 (2) | C3—H3C | 0.9800 |
N1—C2 | 1.464 (3) | ||
S1—Cd1—S1iii | 160.37 (3) | C1—N1—C2 | 121.94 (18) |
S1—Cd1—S2i | 96.922 (18) | C1—N1—C3 | 122.66 (17) |
S1iii—Cd1—S2i | 97.039 (16) | C2—N1—C3 | 115.34 (17) |
S1—Cd1—S2iv | 97.039 (16) | N1—C1—S1 | 121.09 (14) |
S1iii—Cd1—S2iv | 96.922 (18) | N1—C1—S2 | 119.88 (14) |
S2i—Cd1—S2iv | 89.07 (3) | S1—C1—S2 | 119.03 (10) |
S1—Cd1—S2iii | 98.326 (18) | N1—C2—H2A | 109.5 |
S1iii—Cd1—S2iii | 66.812 (15) | N1—C2—H2B | 109.5 |
S2i—Cd1—S2iii | 163.74 (2) | H2A—C2—H2B | 109.5 |
S2iv—Cd1—S2iii | 94.63 (2) | N1—C2—H2C | 109.5 |
S1—Cd1—S2 | 66.812 (15) | H2A—C2—H2C | 109.5 |
S1iii—Cd1—S2 | 98.326 (18) | H2B—C2—H2C | 109.5 |
S2i—Cd1—S2 | 94.63 (2) | N1—C3—H3A | 109.5 |
S2iv—Cd1—S2 | 163.74 (2) | N1—C3—H3B | 109.5 |
S2iii—Cd1—S2 | 86.22 (3) | H3A—C3—H3B | 109.5 |
C1—S1—Cd1 | 89.95 (6) | N1—C3—H3C | 109.5 |
C1—S2—Cd1ii | 98.61 (6) | H3A—C3—H3C | 109.5 |
C1—S2—Cd1 | 84.06 (6) | H3B—C3—H3C | 109.5 |
Cd1ii—S2—Cd1 | 92.35 (2) |
Symmetry codes: (i) −x+3/2, y, z+1/2; (ii) −x+3/2, y, z−1/2; (iii) −x+3/2, −y+1/2, z; (iv) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C3H6NS2)2] |
Mr | 352.82 |
Crystal system, space group | Orthorhombic, Pccn |
Temperature (K) | 296 |
a, b, c (Å) | 10.055 (2), 14.744 (3), 7.9518 (17) |
V (Å3) | 1178.9 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.52 |
Crystal size (mm) | 0.54 × 0.22 × 0.17 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.519, 0.652 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9543, 1370, 1221 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.017, 0.044, 1.07 |
No. of reflections | 1370 |
No. of parameters | 63 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.34 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXTL (Sheldrick, 2008).
Cd1—S1 | 2.6255 (7) | Cd1—S2i | 2.7194 (6) |
Cd1—S2 | 2.7909 (6) |
Symmetry code: (i) −x+3/2, y, z+1/2. |
Rapid development of metal–organic frameworks has been made in recent years not only for their potential applications in materials science but also for fascinating architectures and topologies (Kitagawa et al., 2006; Papaefstathiou & MacGillivray, 2003; Yaghi et al., 1998). Dimethyldithiocarbamic acid is widely used in latex industry. Its natrium, zinc and copper salts are applied widely in antimicrobial, antisepsis and accelerant (Einstein & Field, 1974; Oskarsson & Ymén, 1983). Meanwhile, dimethyldithiocarbamic acid, possessing two S atoms, is a good candidate to coordinate metal atoms and generates rich hydrogen bonding modes. Herein we report the preparation and characterization of the first cadmium complex of dimethyldithiocarbamic acid.
In the title complex, the CdII ion is coordinated in an octahedral geometry by six S atoms from four different dimethyldithiocarbamate ligands (Fig. 1), with the Cd—S distances ranging from 2.6255 (7) to 2.7909 (6) Å (Table 1). Through the bridging of S2 atoms, the title complex forms a one-dimensional structure (Fig. 2).