Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808028274/im2083sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536808028274/im2083Isup2.hkl |
CCDC reference: 706043
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.003 Å
- R factor = 0.030
- wR factor = 0.075
- Data-to-parameter ratio = 8.5
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT128_ALERT_4_C Non-standard setting of Space-group Pc .... Pn
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.66 From the CIF: _reflns_number_total 1162 Count of symmetry unique reflns 1164 Completeness (_total/calc) 99.83% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The title compound was synthesized from pyridine-2-carboxylic acid and aniline according to the procedure of Chan et al. (2004). The crystal used for data collection was obtained by slow evaporation from a saturated ethanol/water solution at room temperature.
All H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with N—H = 0.86 Å, C—H = 0.93 Å, and with Uiso(H) = 1.2Ueq(parent atom).
Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus (Bruker, 2004); program(s) used to solve structure: SHELXL97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia,1999).
Fig. 1. The molecular structure of the title compound, shown with 50% probability displacement ellipsoids. |
C12H10N2O | F(000) = 208 |
Mr = 198.22 | Dx = 1.315 Mg m−3 |
Monoclinic, Pn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2yac | Cell parameters from 2226 reflections |
a = 5.7469 (2) Å | θ = 2.9–25.1° |
b = 6.2382 (2) Å | µ = 0.09 mm−1 |
c = 14.0158 (3) Å | T = 296 K |
β = 94.752 (2)° | Block, colourless |
V = 500.74 (3) Å3 | 0.15 × 0.14 × 0.09 mm |
Z = 2 |
Bruker APEXII CCD diffractometer | 1162 independent reflections |
Radiation source: fine-focus sealed tube | 1036 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
Detector resolution: 10 pixels mm-1 | θmax = 27.7°, θmin = 2.9° |
ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | k = −8→5 |
Tmin = 0.968, Tmax = 0.992 | l = −18→18 |
5000 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.075 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0365P)2 + 0.0548P] where P = (Fo2 + 2Fc2)/3 |
1162 reflections | (Δ/σ)max < 0.001 |
137 parameters | Δρmax = 0.11 e Å−3 |
0 restraints | Δρmin = −0.12 e Å−3 |
C12H10N2O | V = 500.74 (3) Å3 |
Mr = 198.22 | Z = 2 |
Monoclinic, Pn | Mo Kα radiation |
a = 5.7469 (2) Å | µ = 0.09 mm−1 |
b = 6.2382 (2) Å | T = 296 K |
c = 14.0158 (3) Å | 0.15 × 0.14 × 0.09 mm |
β = 94.752 (2)° |
Bruker APEXII CCD diffractometer | 1162 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 1036 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.992 | Rint = 0.017 |
5000 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.075 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.11 e Å−3 |
1162 reflections | Δρmin = −0.12 e Å−3 |
137 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | −0.0173 (3) | 0.2086 (3) | 0.59409 (11) | 0.0452 (4) | |
H101 | −0.1420 | 0.2510 | 0.6183 | 0.054* | |
C8 | 0.1414 (3) | 0.5113 (3) | 0.68241 (13) | 0.0435 (4) | |
C6 | −0.0401 (3) | 0.0235 (3) | 0.53631 (12) | 0.0412 (4) | |
C1 | 0.1246 (4) | −0.0375 (4) | 0.47407 (15) | 0.0509 (5) | |
H1 | 0.2570 | 0.0459 | 0.4685 | 0.061* | |
C7 | 0.1751 (4) | 0.3270 (3) | 0.61595 (15) | 0.0475 (5) | |
C2 | 0.0901 (4) | −0.2230 (4) | 0.42049 (16) | 0.0569 (5) | |
H2 | 0.1999 | −0.2635 | 0.3787 | 0.068* | |
N2 | −0.0537 (3) | 0.5139 (3) | 0.72828 (12) | 0.0526 (4) | |
C5 | −0.2373 (4) | −0.1016 (3) | 0.54213 (15) | 0.0476 (5) | |
H5 | −0.3507 | −0.0595 | 0.5819 | 0.057* | |
O1 | 0.3656 (3) | 0.2937 (3) | 0.58575 (15) | 0.0753 (6) | |
C10 | 0.2767 (5) | 0.8384 (3) | 0.75234 (17) | 0.0575 (5) | |
H10 | 0.3863 | 0.9481 | 0.7597 | 0.069* | |
C11 | 0.0794 (4) | 0.8441 (4) | 0.80026 (16) | 0.0612 (6) | |
H11 | 0.0523 | 0.9575 | 0.8410 | 0.073* | |
C3 | −0.1044 (4) | −0.3483 (4) | 0.42826 (16) | 0.0553 (5) | |
H3 | −0.1255 | −0.4731 | 0.3923 | 0.066* | |
C12 | −0.0787 (4) | 0.6788 (4) | 0.78711 (17) | 0.0629 (6) | |
H12 | −0.2107 | 0.6823 | 0.8213 | 0.076* | |
C9 | 0.3106 (4) | 0.6677 (3) | 0.69302 (15) | 0.0516 (5) | |
H9 | 0.4451 | 0.6581 | 0.6607 | 0.062* | |
C4 | −0.2676 (4) | −0.2879 (4) | 0.48961 (17) | 0.0553 (5) | |
H4 | −0.3986 | −0.3728 | 0.4956 | 0.066* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0458 (9) | 0.0397 (9) | 0.0515 (9) | −0.0007 (7) | 0.0121 (7) | −0.0031 (7) |
C8 | 0.0478 (10) | 0.0408 (10) | 0.0422 (10) | 0.0013 (8) | 0.0051 (8) | 0.0021 (8) |
C6 | 0.0458 (10) | 0.0369 (10) | 0.0408 (10) | 0.0030 (8) | 0.0042 (8) | 0.0021 (8) |
C1 | 0.0504 (11) | 0.0521 (12) | 0.0517 (11) | −0.0041 (10) | 0.0120 (9) | −0.0028 (10) |
C7 | 0.0497 (11) | 0.0398 (11) | 0.0539 (12) | −0.0030 (9) | 0.0092 (9) | −0.0007 (9) |
C2 | 0.0594 (13) | 0.0609 (14) | 0.0515 (12) | 0.0060 (11) | 0.0117 (9) | −0.0103 (10) |
N2 | 0.0477 (9) | 0.0540 (10) | 0.0566 (10) | −0.0015 (8) | 0.0067 (8) | −0.0096 (8) |
C5 | 0.0464 (10) | 0.0458 (11) | 0.0515 (10) | −0.0004 (9) | 0.0088 (8) | −0.0024 (9) |
O1 | 0.0531 (9) | 0.0669 (11) | 0.1095 (15) | −0.0111 (9) | 0.0283 (9) | −0.0330 (10) |
C10 | 0.0699 (14) | 0.0471 (11) | 0.0550 (11) | −0.0102 (12) | 0.0014 (10) | −0.0007 (11) |
C11 | 0.0714 (16) | 0.0553 (14) | 0.0559 (13) | 0.0065 (12) | −0.0002 (11) | −0.0156 (11) |
C3 | 0.0652 (13) | 0.0459 (11) | 0.0537 (11) | 0.0014 (11) | −0.0023 (10) | −0.0119 (10) |
C12 | 0.0561 (13) | 0.0705 (15) | 0.0635 (14) | 0.0047 (11) | 0.0122 (11) | −0.0168 (12) |
C9 | 0.0559 (11) | 0.0486 (12) | 0.0513 (11) | −0.0086 (10) | 0.0116 (9) | −0.0018 (9) |
C4 | 0.0550 (12) | 0.0506 (13) | 0.0598 (12) | −0.0070 (10) | 0.0027 (10) | −0.0027 (11) |
N1—C7 | 1.344 (3) | N2—C12 | 1.333 (3) |
N1—C6 | 1.410 (2) | C5—C4 | 1.379 (3) |
N1—H101 | 0.8600 | C5—H5 | 0.9300 |
C8—N2 | 1.338 (2) | C10—C11 | 1.365 (4) |
C8—C9 | 1.377 (3) | C10—C9 | 1.375 (3) |
C8—C7 | 1.502 (3) | C10—H10 | 0.9300 |
C6—C5 | 1.384 (3) | C11—C12 | 1.377 (3) |
C6—C1 | 1.392 (3) | C11—H11 | 0.9300 |
C1—C2 | 1.385 (3) | C3—C4 | 1.377 (3) |
C1—H1 | 0.9300 | C3—H3 | 0.9300 |
C7—O1 | 1.223 (3) | C12—H12 | 0.9300 |
C2—C3 | 1.376 (4) | C9—H9 | 0.9300 |
C2—H2 | 0.9300 | C4—H4 | 0.9300 |
C7—N1—C6 | 128.07 (17) | C4—C5—H5 | 119.6 |
C7—N1—H101 | 116.0 | C6—C5—H5 | 119.6 |
C6—N1—H101 | 116.0 | C11—C10—C9 | 118.9 (2) |
N2—C8—C9 | 123.48 (19) | C11—C10—H10 | 120.6 |
N2—C8—C7 | 117.62 (17) | C9—C10—H10 | 120.6 |
C9—C8—C7 | 118.89 (18) | C10—C11—C12 | 118.7 (2) |
C5—C6—C1 | 119.06 (17) | C10—C11—H11 | 120.7 |
C5—C6—N1 | 117.74 (17) | C12—C11—H11 | 120.7 |
C1—C6—N1 | 123.19 (17) | C2—C3—C4 | 119.6 (2) |
C2—C1—C6 | 119.57 (19) | C2—C3—H3 | 120.2 |
C2—C1—H1 | 120.2 | C4—C3—H3 | 120.2 |
C6—C1—H1 | 120.2 | N2—C12—C11 | 123.8 (2) |
O1—C7—N1 | 124.81 (19) | N2—C12—H12 | 118.1 |
O1—C7—C8 | 120.61 (18) | C11—C12—H12 | 118.1 |
N1—C7—C8 | 114.58 (18) | C10—C9—C8 | 118.7 (2) |
C3—C2—C1 | 120.8 (2) | C10—C9—H9 | 120.6 |
C3—C2—H2 | 119.6 | C8—C9—H9 | 120.6 |
C1—C2—H2 | 119.6 | C3—C4—C5 | 120.1 (2) |
C12—N2—C8 | 116.38 (18) | C3—C4—H4 | 119.9 |
C4—C5—C6 | 120.77 (19) | C5—C4—H4 | 119.9 |
Experimental details
Crystal data | |
Chemical formula | C12H10N2O |
Mr | 198.22 |
Crystal system, space group | Monoclinic, Pn |
Temperature (K) | 296 |
a, b, c (Å) | 5.7469 (2), 6.2382 (2), 14.0158 (3) |
β (°) | 94.752 (2) |
V (Å3) | 500.74 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.15 × 0.14 × 0.09 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.968, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5000, 1162, 1036 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.653 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.075, 1.00 |
No. of reflections | 1162 |
No. of parameters | 137 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.11, −0.12 |
Computer programs: APEX2 (Bruker, 2004), SAINT-Plus (Bruker, 2004), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia,1999).
Pyridine-containing amides continue to attract considerable interest as ligands for metals (Sousa & Filgueiras, 1990; Gomes et al., 2007; Jacob & Mukherjee, 2006), building blocks in organic synthesis (Marumoto et al., 1981) and physiologically active compounds (Piatnitski & Kiselyov, 2004). As part of our studies on the synthesis and characterization of these compounds, we report here the crystal structure of the title compound.
The C7—O1 [1.223 (3) Å], N1—C7 [1.344 (3) Å] and N1—C6 [1.410 (2) Å] bond lengths indicate extensive electron delocalization in the amide linkage. The pyridyl and phenyl rings of the title compound are almost coplanar, forming a dihedral angle of 1.8 (1)°. In the crystal structure, there is an intramolecular hydrogen bond (N1—H101···N2) and no intermolecular hydrogen bonds are observed (Table 1).
The reported monoclinic space-group is in a non-standard setting (Pn, #7). There is a strong feature (h + l = 2n) in hkl data. Setting up the space group as Pc results in a β angle of 23° or 157°, respectively. Obviously such an unit-cell division is inappropriate. Therefore, the non-standard setting Pn was chosen.