



Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536811014887/is2703sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536811014887/is2703Isup2.hkl |
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean
(C-C) = 0.002 Å
- R factor = 0.025
- wR factor = 0.066
- Data-to-parameter ratio = 10.4
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.595 31 PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 3 PLAT915_ALERT_3_C Low Friedel Pair Coverage ...................... 78 Perc.
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 66.52 From the CIF: _reflns_number_total 2645 Count of symmetry unique reflns 1575 Completeness (_total/calc) 167.94% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1070 Fraction of Friedel pairs measured 0.679 Are heavy atom types Z>Si present no PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 2 PLAT791_ALERT_4_G Note: The Model has Chirality at C2 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C3 (Verify) R PLAT791_ALERT_4_G Note: The Model has Chirality at C4 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C5 (Verify) R PLAT791_ALERT_4_G Note: The Model has Chirality at C8 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C9 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C10 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C12 (Verify) S PLAT909_ALERT_3_G Percentage of Observed Data at Theta(Max) still 100 Perc.
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 3 ALERT level C = Check. Ensure it is not caused by an omission or oversight 11 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 10 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The air-dried roots of Arcangelisia flava (Menispermaceae) (1.8 kg) were extracted with CH2Cl2 (2 × 10 l) under room temperature. The combined extracts were concentrated under reduced pressure to give a yellow extract (30.1 g) which was subjected to quick column chromatography over silica gel using solvents of increasing polarity from n-hexane to EtOAc to afford 10 fractions (F1–F10). Fraction F9 was further purified by column chromatography using CH2Cl2–EtOAc (6:4), yielding the title compound as a white solid (275.3 mg). Colorless needle-shaped single crystals of the title compound suitable for X-ray structure determination were recrystallized from CH2Cl2 by the slow evaporation of the solvent at room temperature after several days (m.p. 539–540 K).
Hydroxy H atom was located from the difference map and refined isotropically. The remaining H atoms were placed in calculated positions with C—H = 0.93 for aromatic, 0.96 Å for CH3, 0.97 for CH2 and 0.98 Å for CH. The Uiso(H) values were constrained to be 1.5Ueq of the carrier atom for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.78 Å from H6B and the deepest hole is located at 1.51 Å from C10. 1098 Friedel pairs were used to determine the absolute configuration. Outlier reflection (11 0) was omitted.
Furanoditerpenoids are secondary metabolites which were found in Menispermaceae plants such as Fibraurea chloroleuta Miers (Ito & Furukawa, 1969), Fibraurea tinctoria Lour. (Su et al., 2008) and Sphenocentrum jollyanum Pierre (Moody et al., 2006). They were found to possess biological properties such as anti-inflammatory and antimalarial activities. Arcangelisia flava (Menispermaceae), commonly called `Khaminkhruea' in the southern Thailand, is widely distributed from Hainan (China), Indo-China, southern peninsular Thailand, peninsular Malaysia, Sumatra, Java, Borneo, the Philipines, Sulawesi, the Northern Moluccas to New Guinea. It is an available medicinal plant used for the treatment of malaria, dysentery and as a tonic. The antimalarial, cytotoxic and antioxidant effects of this plant have been reported (Nguyen-Pouplin et al., 2007; Keawpradub et al., 2005). During the course of our study of bioactive compounds from medicinal plants, the title furanoditerpenoid compound, (I), which is known as fibaruretin B, was isolated for the first time from the roots of Arcangelisia flava (Menispermaceae) which were collected from Songkhla province in the southern part of Thailand. The absolute configuration of (I) was determined by making use of the anomalous scattering of Cu Kα radiation with the Flack parameter being refined to 0.03 (12).
The molecule of (I) has four fused rings consisting of one five- and three six-membered rings (A/B/C/D) (Fig. 1). The two cyclohexane rings A and B are cis fused, whereas the cyclohexane ring B and pyran ring C are trans fused. The cyclohexane ring A (C1–C5/C10) is in an envelope conformation, with the pucker atom C3 (0.4436 (16) Å) and puckering parameter Q = 0.6349 (16) Å, θ = 46.82 (14)° and φ = 115.0 (2)° (Cremer & Pople, 1975). The cyclohexane ring B (C5–C10) adopts a twisted boat conformation with puckering parameter Q = 0.7098 (15) Å, θ = 99.25 (12)° and φ = 45.65 (13)°. The pyran ring C (O5/C17/C8/C9/C11/C12) is in a boat conformation with puckering parameter Q = 0.7026 (15) Å, θ = 89.67 (12)° and φ = 241.68 (12)°. The tetrahydrofuran ring D (O1/C2–C4/C18) is in an envelope conformation, with the pucker atom C3 [-0.2883 (16) Å] and puckering parameter Q = 0.4584 (16) Å and φ = 258.04 (19)°. The furan ring (C13–C16/O7) is planar with an r.m.s. 0.0028 (2) Å and is equatorially attached to the pyran ring C with torsion angles O5—C12—C13—C14 = -76.91 (15)° and O5—C12—C13—C16 = 105.01 (16)°. The bond distances in (I) are within normal ranges (Allen et al., 1987) and comparable with the related structure (Bakhari et al., 1998).
The absolute configuration at atoms C2, C3, C4, C5, C8, C12, C9, C10 or positions 2, 3, 4, 4a, 7, 9, 10a and 10b of the fibaruretin B are S, R, S, R, S, S, S and S, respectively which agree with the previous stereochemistry of fibaruretin B (Su et al., 2008).
In the crystal packing of (I) (Fig. 2), the molecules are linked into chains along the c axis through O—H···O hydrogen bonds and C—H···O weak interactions (Fig. 2 and Table 1) and the crystal is stabilized by these interactions.
For ring conformations, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987). For background to and activities of furanoditerpenoid, see: Ito & Furukawa (1969); Keawpradub et al. (2005); Moody et al. (2006); Nguyen-Pouplin et al. (2007); Su et al. (2008). For a related structure, see: Bakhari et al. (1998). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
C20H24O7 | F(000) = 400 |
Mr = 376.39 | Dx = 1.476 Mg m−3 |
Monoclinic, P21 | Melting point = 539–540 K |
Hall symbol: P 2yb | Cu Kα radiation, λ = 1.54178 Å |
a = 7.0942 (2) Å | Cell parameters from 2645 reflections |
b = 11.7149 (4) Å | θ = 4.3–66.5° |
c = 10.1921 (3) Å | µ = 0.93 mm−1 |
β = 90.805 (1)° | T = 100 K |
V = 846.96 (5) Å3 | Needle, colourless |
Z = 2 | 0.43 × 0.12 × 0.08 mm |
Bruker APEX DUO CCD area-detector diffractometer | 2645 independent reflections |
Radiation source: sealed tube | 2641 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
φ and ω scans | θmax = 66.5°, θmin = 4.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −8→8 |
Tmin = 0.692, Tmax = 0.926 | k = −11→13 |
11247 measured reflections | l = −11→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0393P)2 + 0.1838P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
2645 reflections | Δρmax = 0.19 e Å−3 |
254 parameters | Δρmin = −0.15 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with 1098 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (12) |
C20H24O7 | V = 846.96 (5) Å3 |
Mr = 376.39 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 7.0942 (2) Å | µ = 0.93 mm−1 |
b = 11.7149 (4) Å | T = 100 K |
c = 10.1921 (3) Å | 0.43 × 0.12 × 0.08 mm |
β = 90.805 (1)° |
Bruker APEX DUO CCD area-detector diffractometer | 2645 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2641 reflections with I > 2σ(I) |
Tmin = 0.692, Tmax = 0.926 | Rint = 0.018 |
11247 measured reflections |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | Δρmax = 0.19 e Å−3 |
S = 1.09 | Δρmin = −0.15 e Å−3 |
2645 reflections | Absolute structure: Flack (1983), with 1098 Friedel pairs |
254 parameters | Absolute structure parameter: 0.03 (12) |
1 restraint |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.09153 (14) | 1.02466 (10) | 0.68755 (10) | 0.0211 (2) | |
O2 | 0.32424 (17) | 1.15137 (10) | 0.70124 (12) | 0.0296 (3) | |
O3 | 0.27902 (16) | 0.75672 (11) | 0.80552 (11) | 0.0252 (3) | |
H1O3 | 0.255 (4) | 0.732 (2) | 0.883 (3) | 0.061 (8)* | |
O4 | 0.55436 (14) | 0.96856 (12) | 0.80516 (10) | 0.0239 (3) | |
H1O4 | 0.527 (3) | 0.965 (2) | 0.888 (3) | 0.046 (6)* | |
O5 | 0.31561 (13) | 0.83615 (10) | 0.09804 (9) | 0.0178 (2) | |
O6 | 0.53283 (13) | 0.96975 (11) | 0.09604 (9) | 0.0206 (2) | |
O7 | −0.09239 (17) | 0.58024 (10) | −0.04095 (11) | 0.0275 (3) | |
C1 | 0.08225 (19) | 0.83863 (15) | 0.58193 (13) | 0.0188 (3) | |
H1A | −0.0153 | 0.8680 | 0.5235 | 0.023* | |
H1B | 0.0542 | 0.7589 | 0.5981 | 0.023* | |
C2 | 0.07216 (19) | 0.90202 (14) | 0.70997 (14) | 0.0185 (3) | |
H2A | −0.0459 | 0.8851 | 0.7547 | 0.022* | |
C3 | 0.2412 (2) | 0.87467 (14) | 0.79792 (13) | 0.0181 (3) | |
H3A | 0.2207 | 0.9052 | 0.8861 | 0.022* | |
C4 | 0.39121 (19) | 0.94530 (14) | 0.72888 (14) | 0.0170 (3) | |
C5 | 0.45100 (19) | 0.89413 (13) | 0.59309 (13) | 0.0147 (3) | |
C6 | 0.56241 (19) | 0.98757 (13) | 0.51939 (14) | 0.0162 (3) | |
H6A | 0.4927 | 1.0586 | 0.5247 | 0.019* | |
H6B | 0.6821 | 0.9989 | 0.5647 | 0.019* | |
C7 | 0.60174 (18) | 0.96286 (14) | 0.37404 (14) | 0.0163 (3) | |
H7A | 0.6105 | 1.0347 | 0.3272 | 0.020* | |
H7B | 0.7225 | 0.9246 | 0.3676 | 0.020* | |
C8 | 0.44977 (18) | 0.88869 (13) | 0.30780 (13) | 0.0145 (3) | |
H8A | 0.4901 | 0.8096 | 0.3218 | 0.017* | |
C9 | 0.25169 (18) | 0.89794 (14) | 0.37078 (13) | 0.0151 (3) | |
C10 | 0.27476 (18) | 0.84594 (14) | 0.51044 (13) | 0.0147 (3) | |
H10A | 0.3078 | 0.7660 | 0.4940 | 0.018* | |
C11 | 0.1130 (2) | 0.82256 (15) | 0.28832 (13) | 0.0200 (3) | |
H11A | 0.0532 | 0.7684 | 0.3465 | 0.024* | |
H11B | 0.0149 | 0.8712 | 0.2516 | 0.024* | |
C12 | 0.20406 (19) | 0.75715 (14) | 0.17735 (13) | 0.0158 (3) | |
H12A | 0.2855 | 0.6969 | 0.2132 | 0.019* | |
C13 | 0.0605 (2) | 0.70654 (14) | 0.08547 (14) | 0.0169 (3) | |
C14 | −0.1096 (2) | 0.75809 (15) | 0.03551 (14) | 0.0214 (3) | |
H14A | −0.1519 | 0.8318 | 0.0517 | 0.026* | |
C15 | −0.1952 (2) | 0.67891 (16) | −0.03912 (14) | 0.0245 (4) | |
H15A | −0.3091 | 0.6896 | −0.0837 | 0.029* | |
C16 | 0.0642 (2) | 0.60018 (15) | 0.03548 (15) | 0.0226 (3) | |
H16A | 0.1600 | 0.5475 | 0.0508 | 0.027* | |
C17 | 0.43951 (19) | 0.90427 (14) | 0.16102 (14) | 0.0161 (3) | |
C18 | 0.2742 (2) | 1.05332 (15) | 0.70502 (14) | 0.0196 (3) | |
C19 | 0.5852 (2) | 0.79280 (14) | 0.61724 (14) | 0.0185 (3) | |
H19A | 0.6860 | 0.8160 | 0.6751 | 0.028* | |
H19B | 0.6363 | 0.7681 | 0.5353 | 0.028* | |
H19C | 0.5170 | 0.7311 | 0.6564 | 0.028* | |
C20 | 0.17620 (19) | 1.02044 (14) | 0.36919 (14) | 0.0185 (3) | |
H20A | 0.0509 | 1.0215 | 0.4036 | 0.028* | |
H20B | 0.1736 | 1.0485 | 0.2807 | 0.028* | |
H20C | 0.2567 | 1.0681 | 0.4223 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0209 (5) | 0.0249 (7) | 0.0177 (5) | 0.0024 (4) | 0.0029 (4) | −0.0014 (5) |
O2 | 0.0385 (6) | 0.0192 (7) | 0.0313 (6) | −0.0040 (5) | 0.0147 (5) | −0.0054 (5) |
O3 | 0.0353 (6) | 0.0215 (6) | 0.0189 (6) | −0.0015 (5) | 0.0068 (5) | 0.0065 (5) |
O4 | 0.0183 (5) | 0.0407 (7) | 0.0125 (5) | −0.0077 (5) | −0.0016 (4) | −0.0034 (5) |
O5 | 0.0203 (5) | 0.0222 (6) | 0.0109 (4) | −0.0035 (4) | 0.0008 (4) | −0.0001 (4) |
O6 | 0.0215 (5) | 0.0262 (6) | 0.0143 (5) | −0.0042 (5) | 0.0021 (4) | 0.0028 (4) |
O7 | 0.0346 (6) | 0.0253 (7) | 0.0225 (6) | −0.0079 (5) | −0.0056 (4) | −0.0038 (5) |
C1 | 0.0175 (7) | 0.0248 (9) | 0.0141 (6) | −0.0075 (6) | 0.0010 (5) | −0.0010 (6) |
C2 | 0.0169 (7) | 0.0244 (9) | 0.0145 (7) | −0.0046 (6) | 0.0041 (5) | 0.0001 (6) |
C3 | 0.0209 (7) | 0.0223 (9) | 0.0112 (7) | −0.0035 (6) | 0.0025 (5) | −0.0010 (6) |
C4 | 0.0162 (6) | 0.0217 (9) | 0.0131 (6) | −0.0044 (6) | −0.0011 (5) | −0.0020 (6) |
C5 | 0.0147 (6) | 0.0171 (8) | 0.0124 (6) | −0.0016 (6) | 0.0005 (5) | −0.0007 (6) |
C6 | 0.0148 (6) | 0.0187 (8) | 0.0152 (7) | −0.0021 (6) | −0.0003 (5) | −0.0005 (6) |
C7 | 0.0140 (6) | 0.0205 (8) | 0.0144 (7) | −0.0022 (6) | 0.0016 (5) | 0.0005 (6) |
C8 | 0.0143 (6) | 0.0155 (8) | 0.0138 (7) | 0.0006 (5) | 0.0007 (5) | 0.0001 (6) |
C9 | 0.0142 (6) | 0.0189 (8) | 0.0122 (6) | −0.0022 (6) | 0.0012 (5) | −0.0010 (6) |
C10 | 0.0153 (6) | 0.0158 (8) | 0.0130 (7) | −0.0029 (5) | 0.0010 (5) | −0.0015 (5) |
C11 | 0.0159 (6) | 0.0296 (9) | 0.0144 (7) | −0.0044 (6) | 0.0011 (5) | −0.0045 (6) |
C12 | 0.0170 (6) | 0.0171 (8) | 0.0132 (6) | −0.0010 (6) | 0.0001 (5) | 0.0029 (6) |
C13 | 0.0197 (7) | 0.0185 (8) | 0.0124 (6) | −0.0032 (6) | 0.0022 (5) | 0.0012 (6) |
C14 | 0.0226 (7) | 0.0249 (9) | 0.0167 (7) | −0.0005 (6) | −0.0008 (5) | 0.0000 (6) |
C15 | 0.0248 (7) | 0.0310 (10) | 0.0177 (7) | −0.0055 (7) | −0.0041 (6) | 0.0004 (6) |
C16 | 0.0280 (8) | 0.0209 (9) | 0.0190 (7) | −0.0036 (6) | −0.0008 (6) | −0.0012 (6) |
C17 | 0.0146 (6) | 0.0178 (8) | 0.0158 (7) | 0.0040 (6) | 0.0010 (5) | −0.0013 (6) |
C18 | 0.0254 (7) | 0.0210 (9) | 0.0125 (6) | −0.0025 (6) | 0.0070 (5) | −0.0040 (6) |
C19 | 0.0166 (6) | 0.0218 (9) | 0.0172 (6) | 0.0012 (6) | 0.0005 (5) | 0.0035 (6) |
C20 | 0.0171 (6) | 0.0232 (9) | 0.0152 (7) | 0.0032 (6) | −0.0005 (5) | 0.0016 (6) |
O1—C18 | 1.3482 (19) | C7—C8 | 1.5338 (19) |
O1—C2 | 1.462 (2) | C7—H7A | 0.9700 |
O2—C18 | 1.203 (2) | C7—H7B | 0.9700 |
O3—C3 | 1.409 (2) | C8—C17 | 1.5078 (19) |
O3—H1O3 | 0.86 (3) | C8—C9 | 1.5568 (17) |
O4—C4 | 1.4117 (16) | C8—H8A | 0.9800 |
O4—H1O4 | 0.87 (3) | C9—C20 | 1.532 (2) |
O5—C17 | 1.3437 (18) | C9—C10 | 1.5548 (19) |
O5—C12 | 1.4677 (17) | C9—C11 | 1.5593 (19) |
O6—C17 | 1.2156 (19) | C10—H10A | 0.9800 |
O7—C15 | 1.367 (2) | C11—C12 | 1.518 (2) |
O7—C16 | 1.3677 (18) | C11—H11A | 0.9700 |
C1—C2 | 1.504 (2) | C11—H11B | 0.9700 |
C1—C10 | 1.5593 (18) | C12—C13 | 1.4962 (19) |
C1—H1A | 0.9700 | C12—H12A | 0.9800 |
C1—H1B | 0.9700 | C13—C16 | 1.347 (2) |
C2—C3 | 1.521 (2) | C13—C14 | 1.436 (2) |
C2—H2A | 0.9800 | C14—C15 | 1.340 (2) |
C3—C4 | 1.528 (2) | C14—H14A | 0.9300 |
C3—H3A | 0.9800 | C15—H15A | 0.9300 |
C4—C18 | 1.531 (2) | C16—H16A | 0.9300 |
C4—C5 | 1.5720 (18) | C19—H19A | 0.9600 |
C5—C19 | 1.539 (2) | C19—H19B | 0.9600 |
C5—C6 | 1.550 (2) | C19—H19C | 0.9600 |
C5—C10 | 1.6006 (18) | C20—H20A | 0.9600 |
C6—C7 | 1.5388 (19) | C20—H20B | 0.9600 |
C6—H6A | 0.9700 | C20—H20C | 0.9600 |
C6—H6B | 0.9700 | ||
C18—O1—C2 | 108.45 (12) | C20—C9—C8 | 112.23 (12) |
C3—O3—H1O3 | 109.8 (19) | C10—C9—C8 | 105.44 (11) |
C4—O4—H1O4 | 109.2 (15) | C20—C9—C11 | 107.87 (11) |
C17—O5—C12 | 117.74 (10) | C10—C9—C11 | 109.21 (12) |
C15—O7—C16 | 106.07 (12) | C8—C9—C11 | 107.75 (11) |
C2—C1—C10 | 115.53 (12) | C9—C10—C1 | 111.57 (11) |
C2—C1—H1A | 108.4 | C9—C10—C5 | 114.52 (11) |
C10—C1—H1A | 108.4 | C1—C10—C5 | 117.14 (11) |
C2—C1—H1B | 108.4 | C9—C10—H10A | 103.9 |
C10—C1—H1B | 108.4 | C1—C10—H10A | 103.9 |
H1A—C1—H1B | 107.5 | C5—C10—H10A | 103.9 |
O1—C2—C1 | 110.12 (12) | C12—C11—C9 | 114.55 (11) |
O1—C2—C3 | 102.95 (12) | C12—C11—H11A | 108.6 |
C1—C2—C3 | 111.13 (12) | C9—C11—H11A | 108.6 |
O1—C2—H2A | 110.8 | C12—C11—H11B | 108.6 |
C1—C2—H2A | 110.8 | C9—C11—H11B | 108.6 |
C3—C2—H2A | 110.8 | H11A—C11—H11B | 107.6 |
O3—C3—C2 | 112.76 (13) | O5—C12—C13 | 105.82 (10) |
O3—C3—C4 | 115.02 (13) | O5—C12—C11 | 109.30 (12) |
C2—C3—C4 | 99.38 (11) | C13—C12—C11 | 111.92 (11) |
O3—C3—H3A | 109.7 | O5—C12—H12A | 109.9 |
C2—C3—H3A | 109.7 | C13—C12—H12A | 109.9 |
C4—C3—H3A | 109.7 | C11—C12—H12A | 109.9 |
O4—C4—C3 | 114.97 (12) | C16—C13—C14 | 105.98 (13) |
O4—C4—C18 | 111.49 (13) | C16—C13—C12 | 125.95 (15) |
C3—C4—C18 | 98.12 (11) | C14—C13—C12 | 128.05 (15) |
O4—C4—C5 | 109.22 (11) | C15—C14—C13 | 106.37 (16) |
C3—C4—C5 | 113.41 (12) | C15—C14—H14A | 126.8 |
C18—C4—C5 | 109.13 (12) | C13—C14—H14A | 126.8 |
C19—C5—C6 | 107.67 (11) | C14—C15—O7 | 110.84 (14) |
C19—C5—C4 | 109.10 (11) | C14—C15—H15A | 124.6 |
C6—C5—C4 | 107.64 (12) | O7—C15—H15A | 124.6 |
C19—C5—C10 | 106.79 (12) | C13—C16—O7 | 110.72 (14) |
C6—C5—C10 | 113.19 (11) | C13—C16—H16A | 124.6 |
C4—C5—C10 | 112.30 (10) | O7—C16—H16A | 124.6 |
C7—C6—C5 | 115.73 (12) | O6—C17—O5 | 118.17 (13) |
C7—C6—H6A | 108.3 | O6—C17—C8 | 126.71 (13) |
C5—C6—H6A | 108.3 | O5—C17—C8 | 115.10 (12) |
C7—C6—H6B | 108.3 | O2—C18—O1 | 121.13 (15) |
C5—C6—H6B | 108.3 | O2—C18—C4 | 129.41 (14) |
H6A—C6—H6B | 107.4 | O1—C18—C4 | 109.46 (13) |
C8—C7—C6 | 113.24 (11) | C5—C19—H19A | 109.5 |
C8—C7—H7A | 108.9 | C5—C19—H19B | 109.5 |
C6—C7—H7A | 108.9 | H19A—C19—H19B | 109.5 |
C8—C7—H7B | 108.9 | C5—C19—H19C | 109.5 |
C6—C7—H7B | 108.9 | H19A—C19—H19C | 109.5 |
H7A—C7—H7B | 107.7 | H19B—C19—H19C | 109.5 |
C17—C8—C7 | 113.08 (12) | C9—C20—H20A | 109.5 |
C17—C8—C9 | 111.68 (11) | C9—C20—H20B | 109.5 |
C7—C8—C9 | 114.33 (11) | H20A—C20—H20B | 109.5 |
C17—C8—H8A | 105.6 | C9—C20—H20C | 109.5 |
C7—C8—H8A | 105.6 | H20A—C20—H20C | 109.5 |
C9—C8—H8A | 105.6 | H20B—C20—H20C | 109.5 |
C20—C9—C10 | 114.15 (11) | ||
C18—O1—C2—C1 | −94.59 (13) | C2—C1—C10—C9 | −121.36 (14) |
C18—O1—C2—C3 | 23.98 (14) | C2—C1—C10—C5 | 13.4 (2) |
C10—C1—C2—O1 | 64.85 (17) | C19—C5—C10—C9 | −116.27 (13) |
C10—C1—C2—C3 | −48.58 (18) | C6—C5—C10—C9 | 2.04 (17) |
O1—C2—C3—O3 | −164.81 (11) | C4—C5—C10—C9 | 124.18 (13) |
C1—C2—C3—O3 | −46.95 (16) | C19—C5—C10—C1 | 110.25 (14) |
O1—C2—C3—C4 | −42.52 (13) | C6—C5—C10—C1 | −131.43 (13) |
C1—C2—C3—C4 | 75.34 (15) | C4—C5—C10—C1 | −9.29 (18) |
O3—C3—C4—O4 | −77.80 (16) | C20—C9—C11—C12 | 124.47 (13) |
C2—C3—C4—O4 | 161.55 (13) | C10—C9—C11—C12 | −110.95 (14) |
O3—C3—C4—C18 | 163.86 (12) | C8—C9—C11—C12 | 3.10 (18) |
C2—C3—C4—C18 | 43.21 (13) | C17—O5—C12—C13 | 171.56 (12) |
O3—C3—C4—C5 | 48.87 (17) | C17—O5—C12—C11 | 50.87 (15) |
C2—C3—C4—C5 | −71.78 (15) | C9—C11—C12—O5 | −51.14 (16) |
O4—C4—C5—C19 | 52.16 (16) | C9—C11—C12—C13 | −168.04 (13) |
C3—C4—C5—C19 | −77.48 (15) | O5—C12—C13—C16 | 105.01 (16) |
C18—C4—C5—C19 | 174.28 (12) | C11—C12—C13—C16 | −136.03 (16) |
O4—C4—C5—C6 | −64.40 (15) | O5—C12—C13—C14 | −76.91 (17) |
C3—C4—C5—C6 | 165.96 (12) | C11—C12—C13—C14 | 42.1 (2) |
C18—C4—C5—C6 | 57.71 (14) | C16—C13—C14—C15 | 0.54 (17) |
O4—C4—C5—C10 | 170.36 (13) | C12—C13—C14—C15 | −177.84 (14) |
C3—C4—C5—C10 | 40.72 (17) | C13—C14—C15—O7 | −0.09 (18) |
C18—C4—C5—C10 | −67.53 (15) | C16—O7—C15—C14 | −0.40 (17) |
C19—C5—C6—C7 | 73.55 (14) | C14—C13—C16—O7 | −0.81 (17) |
C4—C5—C6—C7 | −168.95 (12) | C12—C13—C16—O7 | 177.62 (13) |
C10—C5—C6—C7 | −44.25 (16) | C15—O7—C16—C13 | 0.76 (16) |
C5—C6—C7—C8 | 29.86 (17) | C12—O5—C17—O6 | 179.82 (13) |
C6—C7—C8—C17 | 155.77 (13) | C12—O5—C17—C8 | 0.97 (18) |
C6—C7—C8—C9 | 26.47 (18) | C7—C8—C17—O6 | −2.4 (2) |
C17—C8—C9—C20 | −71.31 (15) | C9—C8—C17—O6 | 128.28 (16) |
C7—C8—C9—C20 | 58.69 (15) | C7—C8—C17—O5 | 176.37 (12) |
C17—C8—C9—C10 | 163.84 (13) | C9—C8—C17—O5 | −52.99 (17) |
C7—C8—C9—C10 | −66.16 (16) | C2—O1—C18—O2 | −174.62 (13) |
C17—C8—C9—C11 | 47.30 (17) | C2—O1—C18—C4 | 5.10 (14) |
C7—C8—C9—C11 | 177.30 (12) | O4—C4—C18—O2 | 27.2 (2) |
C20—C9—C10—C1 | 61.69 (15) | C3—C4—C18—O2 | 148.19 (15) |
C8—C9—C10—C1 | −174.68 (12) | C5—C4—C18—O2 | −93.50 (18) |
C11—C9—C10—C1 | −59.14 (16) | O4—C4—C18—O1 | −152.46 (11) |
C20—C9—C10—C5 | −74.33 (14) | C3—C4—C18—O1 | −31.50 (13) |
C8—C9—C10—C5 | 49.30 (16) | C5—C4—C18—O1 | 86.81 (13) |
C11—C9—C10—C5 | 164.85 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O3···O5i | 0.86 (3) | 2.54 (3) | 3.1305 (15) | 127 (2) |
O4—H1O4···O6i | 0.87 (3) | 2.12 (3) | 2.9708 (14) | 165 (2) |
C3—H3A···O5i | 0.98 | 2.39 | 3.1295 (16) | 131 |
C6—H6A···O2 | 0.97 | 2.43 | 3.1718 (19) | 133 |
C8—H8A···O2ii | 0.98 | 2.29 | 3.2113 (19) | 157 |
C19—H19C···O3 | 0.96 | 2.31 | 2.9489 (18) | 124 |
C20—H20B···O7iii | 0.96 | 2.53 | 3.4613 (18) | 164 |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, y−1/2, −z+1; (iii) −x, y+1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C20H24O7 |
Mr | 376.39 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 7.0942 (2), 11.7149 (4), 10.1921 (3) |
β (°) | 90.805 (1) |
V (Å3) | 846.96 (5) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.93 |
Crystal size (mm) | 0.43 × 0.12 × 0.08 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.692, 0.926 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11247, 2645, 2641 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.066, 1.09 |
No. of reflections | 2645 |
No. of parameters | 254 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.19, −0.15 |
Absolute structure | Flack (1983), with 1098 Friedel pairs |
Absolute structure parameter | 0.03 (12) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O3···O5i | 0.86 (3) | 2.54 (3) | 3.1305 (15) | 127 (2) |
O4—H1O4···O6i | 0.87 (3) | 2.12 (3) | 2.9708 (14) | 165 (2) |
C3—H3A···O5i | 0.98 | 2.39 | 3.1295 (16) | 131 |
C6—H6A···O2 | 0.97 | 2.43 | 3.1718 (19) | 133 |
C8—H8A···O2ii | 0.98 | 2.29 | 3.2113 (19) | 157 |
C19—H19C···O3 | 0.96 | 2.31 | 2.9489 (18) | 124 |
C20—H20B···O7iii | 0.96 | 2.53 | 3.4613 (18) | 164 |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, y−1/2, −z+1; (iii) −x, y+1/2, −z. |
Furanoditerpenoids are secondary metabolites which were found in Menispermaceae plants such as Fibraurea chloroleuta Miers (Ito & Furukawa, 1969), Fibraurea tinctoria Lour. (Su et al., 2008) and Sphenocentrum jollyanum Pierre (Moody et al., 2006). They were found to possess biological properties such as anti-inflammatory and antimalarial activities. Arcangelisia flava (Menispermaceae), commonly called `Khaminkhruea' in the southern Thailand, is widely distributed from Hainan (China), Indo-China, southern peninsular Thailand, peninsular Malaysia, Sumatra, Java, Borneo, the Philipines, Sulawesi, the Northern Moluccas to New Guinea. It is an available medicinal plant used for the treatment of malaria, dysentery and as a tonic. The antimalarial, cytotoxic and antioxidant effects of this plant have been reported (Nguyen-Pouplin et al., 2007; Keawpradub et al., 2005). During the course of our study of bioactive compounds from medicinal plants, the title furanoditerpenoid compound, (I), which is known as fibaruretin B, was isolated for the first time from the roots of Arcangelisia flava (Menispermaceae) which were collected from Songkhla province in the southern part of Thailand. The absolute configuration of (I) was determined by making use of the anomalous scattering of Cu Kα radiation with the Flack parameter being refined to 0.03 (12).
The molecule of (I) has four fused rings consisting of one five- and three six-membered rings (A/B/C/D) (Fig. 1). The two cyclohexane rings A and B are cis fused, whereas the cyclohexane ring B and pyran ring C are trans fused. The cyclohexane ring A (C1–C5/C10) is in an envelope conformation, with the pucker atom C3 (0.4436 (16) Å) and puckering parameter Q = 0.6349 (16) Å, θ = 46.82 (14)° and φ = 115.0 (2)° (Cremer & Pople, 1975). The cyclohexane ring B (C5–C10) adopts a twisted boat conformation with puckering parameter Q = 0.7098 (15) Å, θ = 99.25 (12)° and φ = 45.65 (13)°. The pyran ring C (O5/C17/C8/C9/C11/C12) is in a boat conformation with puckering parameter Q = 0.7026 (15) Å, θ = 89.67 (12)° and φ = 241.68 (12)°. The tetrahydrofuran ring D (O1/C2–C4/C18) is in an envelope conformation, with the pucker atom C3 [-0.2883 (16) Å] and puckering parameter Q = 0.4584 (16) Å and φ = 258.04 (19)°. The furan ring (C13–C16/O7) is planar with an r.m.s. 0.0028 (2) Å and is equatorially attached to the pyran ring C with torsion angles O5—C12—C13—C14 = -76.91 (15)° and O5—C12—C13—C16 = 105.01 (16)°. The bond distances in (I) are within normal ranges (Allen et al., 1987) and comparable with the related structure (Bakhari et al., 1998).
The absolute configuration at atoms C2, C3, C4, C5, C8, C12, C9, C10 or positions 2, 3, 4, 4a, 7, 9, 10a and 10b of the fibaruretin B are S, R, S, R, S, S, S and S, respectively which agree with the previous stereochemistry of fibaruretin B (Su et al., 2008).
In the crystal packing of (I) (Fig. 2), the molecules are linked into chains along the c axis through O—H···O hydrogen bonds and C—H···O weak interactions (Fig. 2 and Table 1) and the crystal is stabilized by these interactions.