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In the title coordination compound, the Cd atom is octa­hedrally coordinated by two N,N′-bidentate ligands [4-(2-amino­eth­yl)morpholine] and two trans-located acetate mol­ecules. The Cd atom is located on a centre of inversion, whereas the morpholine and four water mol­ecules are adjacent to the acetate moieties. In the crystal, neighboring metal complexes and uncoordinated water mol­ecules are linked via N—H...O and O—H...O hydrogen-bonding inter­actions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989023008782/jq2030sup1.cif
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2056989023008782/jq2030Isup4.hkl
Contains datablock I

CCDC reference: 2299387

Key indicators

Structure: I
  • Single-crystal X-ray study
  • T = 296 K
  • Mean [sigma](C-C) = 0.003 Å
  • Disorder in main residue
  • R factor = 0.022
  • wR factor = 0.056
  • Data-to-parameter ratio = 14.5

checkCIF/PLATON results

No syntax errors found



Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 20 Note PLAT003_ALERT_2_G Number of Uiso or Uij Restrained non-H Atoms ... 8 Report PLAT154_ALERT_1_G The s.u.'s on the Cell Angles are Equal ..(Note) 0.002 Degree PLAT171_ALERT_4_G The CIF-Embedded .res File Contains EADP Records 1 Report PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 1 Report PLAT174_ALERT_4_G The CIF-Embedded .res File Contains FLAT Records 2 Report PLAT176_ALERT_4_G The CIF-Embedded .res File Contains SADI Records 8 Report PLAT178_ALERT_4_G The CIF-Embedded .res File Contains SIMU Records 1 Report PLAT187_ALERT_4_G The CIF-Embedded .res File Contains RIGU Records 1 Report PLAT188_ALERT_3_G A Non-default SIMU Restraint Value has been used 0.0200 Report PLAT300_ALERT_4_G Atom Site Occupancy of O1 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of O1B Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of O2 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of O2B Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of C7 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of C7B Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of C8 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of C8B Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H8B1 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H8B2 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H8B3 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H8A Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H8B Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H8C Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H6 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H6' Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H4 Constrained at 0.5 Check PLAT300_ALERT_4_G Atom Site Occupancy of H4' Constrained at 0.5 Check PLAT301_ALERT_3_G Main Residue Disorder ..............(Resd 1 ) 30% Note PLAT302_ALERT_4_G Anion/Solvent/Minor-Residue Disorder (Resd 2 ) 100% Note PLAT398_ALERT_2_G Deviating C-O-C Angle From 120 for O3 . 109.1 Degree PLAT480_ALERT_4_G Long H...A H-Bond Reported H4B ..O2B . 2.66 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H5B ..O1B . 2.63 Ang. PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 3 Note PLAT811_ALERT_5_G No ADDSYM Analysis: Too Many Excluded Atoms .... ! Info PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 156 Note PLAT933_ALERT_2_G Number of HKL-OMIT Records in Embedded .res File 1 Note PLAT965_ALERT_2_G The SHELXL WEIGHT Optimisation has not Converged Please Check PLAT967_ALERT_5_G Note: Two-Theta Cutoff Value in Embedded .res .. 56.0 Degree PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 3 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 0 ALERT level C = Check. Ensure it is not caused by an omission or oversight 40 ALERT level G = General information/check it is not something unexpected 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 28 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check

Computing details top

Data collection: APEX2 (Bruker, 2004); cell refinement: APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXT2018/2 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2019/2 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: SHELXL2019/2 (Sheldrick, 2015b).

Diacetatobis[4-(2-aminoethyl)morpholine]cadmium tetrahydrate top
Crystal data top
[Cd(C2H3O2)2(C6H14N2O)2]·4H2OZ = 1
Mr = 562.93F(000) = 294
Triclinic, P1Dx = 1.485 Mg m3
a = 8.8639 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.1035 (5) ÅCell parameters from 8460 reflections
c = 9.2106 (5) Åθ = 2.5–27.7°
α = 66.004 (2)°µ = 0.92 mm1
β = 73.603 (2)°T = 296 K
γ = 70.161 (2)°BLOCK, yellow
V = 629.63 (6) Å30.42 × 0.25 × 0.20 mm
Data collection top
Bruker APEXII
diffractometer
3034 independent reflections
Radiation source: fine-focus sealed tube3024 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.065
Detector resolution: 8.333 pixels mm-1θmax = 28.0°, θmin = 2.5°
ω and φ scanh = 1111
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
k = 1212
Tmin = 0.603, Tmax = 0.746l = 1212
19482 measured reflections
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.022H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.056 w = 1/[σ2(Fo2) + (0.0252P)2 + 0.0883P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3034 reflectionsΔρmax = 0.35 e Å3
209 parametersΔρmin = 0.41 e Å3
156 restraintsExtinction correction: SHELXL2019/2 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.070 (3)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Acetate moiety is disordered over two positions with an occupancy ratio of 1:1. SADI restraint was used to fix similar distances to be equal for the disordered atoms. The anisotropic displacement parameters of atoms in the disordered groups were restrained to be equal with an effective standard deviation of 0.02A2 using SIMU restraint. Hydrogen, H6, on O5 water molecules is having two possible locations labelled as H6 and H6'. The refined occupancy ratio of H6 and H6' was found to be 47:53

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Cd10.5000000.0000000.5000000.02834 (8)
C10.1597 (2)0.3173 (2)0.3992 (2)0.0414 (4)
H1A0.2341020.3359920.2973750.050*
H1B0.0927790.4249300.4043150.050*
C20.0527 (3)0.2171 (3)0.4051 (3)0.0526 (5)
H2A0.0110080.2791600.3188550.063*
H2B0.1200040.1144840.3882090.063*
C30.0405 (3)0.0877 (3)0.6807 (3)0.0525 (5)
H3A0.1109300.0139300.6637160.063*
H3B0.0315240.0572560.7830560.063*
C40.1428 (2)0.1877 (2)0.6869 (2)0.0410 (4)
H4A0.0724800.2874360.7079120.049*
H4B0.2049060.1225550.7741560.049*
C50.3357 (2)0.3536 (2)0.5304 (2)0.0378 (4)
H5A0.2541260.4411930.5643460.045*
H5B0.3862510.4042920.4206330.045*
C60.4629 (2)0.2741 (2)0.6376 (2)0.0371 (4)
H6A0.5044950.3591690.6390320.044*
H6B0.4144650.2188550.7468090.044*
N10.25477 (17)0.23413 (17)0.53308 (17)0.0309 (3)
N20.59686 (19)0.1529 (2)0.5791 (2)0.0373 (3)
H10.657 (3)0.101 (3)0.649 (3)0.045*
H20.654 (3)0.202 (3)0.495 (2)0.045*
C70.6344 (19)0.2664 (19)0.1517 (17)0.046 (2)0.5
C80.667 (2)0.321 (2)0.0301 (15)0.072 (3)0.5
H8A0.5655330.3681900.0696970.108*0.5
H8B0.7278220.2268570.0627870.108*0.5
H8C0.7283420.4029970.0734420.108*0.5
O10.6956 (18)0.3179 (17)0.2228 (18)0.0498 (19)0.5
O20.539 (2)0.171 (2)0.223 (2)0.045 (3)0.5
C7B0.6416 (18)0.2682 (19)0.1635 (16)0.046 (2)0.5
C8B0.707 (2)0.297 (2)0.0148 (15)0.079 (4)0.5
H8B10.6473200.4036710.0777700.119*0.5
H8B20.6943690.2115330.0423990.119*0.5
H8B30.8199670.2950000.0368250.119*0.5
O1B0.6664 (19)0.3510 (17)0.228 (2)0.055 (3)0.5
O2B0.566 (2)0.154 (2)0.233 (2)0.0407 (19)0.5
O30.05347 (18)0.1793 (2)0.5549 (2)0.0623 (4)
O40.3639 (3)0.1019 (2)0.0781 (2)0.0653 (5)
H30.424 (4)0.133 (4)0.109 (4)0.098*
H40.302 (6)0.190 (4)0.034 (8)0.098*0.5
H4'0.431 (5)0.030 (7)0.044 (8)0.098*0.5
O50.8474 (6)0.5833 (6)0.0761 (12)0.0584 (13)0.75 (3)
H50.796 (3)0.510 (3)0.115 (3)0.088*
H60.939 (2)0.529 (6)0.049 (6)0.088*0.5
H6'0.778 (5)0.665 (3)0.032 (6)0.088*0.5
O5B0.842 (2)0.572 (2)0.034 (2)0.0584 (13)0.25 (3)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cd10.02855 (11)0.02433 (10)0.03058 (10)0.00663 (6)0.00444 (6)0.00839 (6)
C10.0356 (9)0.0330 (9)0.0487 (10)0.0015 (7)0.0159 (8)0.0100 (8)
C20.0369 (11)0.0521 (12)0.0715 (14)0.0020 (9)0.0257 (10)0.0205 (11)
C30.0335 (10)0.0498 (12)0.0665 (14)0.0143 (9)0.0022 (9)0.0167 (10)
C40.0337 (9)0.0371 (9)0.0456 (10)0.0056 (7)0.0011 (7)0.0159 (8)
C50.0391 (10)0.0241 (8)0.0487 (10)0.0070 (7)0.0070 (8)0.0123 (7)
C60.0383 (9)0.0358 (9)0.0452 (9)0.0120 (7)0.0064 (7)0.0203 (8)
N10.0266 (7)0.0260 (6)0.0375 (7)0.0052 (5)0.0057 (5)0.0094 (5)
N20.0286 (8)0.0410 (8)0.0470 (9)0.0105 (6)0.0073 (6)0.0179 (7)
C70.049 (5)0.034 (4)0.038 (4)0.006 (3)0.006 (3)0.002 (3)
C80.084 (7)0.069 (5)0.033 (3)0.022 (5)0.004 (3)0.005 (3)
O10.050 (4)0.043 (5)0.045 (3)0.017 (4)0.001 (3)0.005 (3)
O20.044 (5)0.045 (4)0.032 (3)0.014 (4)0.007 (3)0.002 (2)
C7B0.042 (4)0.042 (4)0.028 (3)0.005 (3)0.009 (3)0.002 (3)
C8B0.106 (10)0.079 (8)0.041 (4)0.040 (8)0.020 (5)0.019 (5)
O1B0.063 (6)0.041 (5)0.049 (3)0.018 (4)0.013 (3)0.014 (3)
O2B0.041 (4)0.040 (3)0.030 (3)0.006 (3)0.010 (3)0.002 (2)
O30.0278 (7)0.0637 (10)0.0934 (13)0.0077 (7)0.0151 (8)0.0249 (9)
O40.0829 (13)0.0561 (10)0.0529 (9)0.0055 (9)0.0237 (9)0.0168 (8)
O50.0560 (11)0.0528 (12)0.065 (3)0.0172 (9)0.0029 (15)0.0208 (15)
O5B0.0560 (11)0.0528 (12)0.065 (3)0.0172 (9)0.0029 (15)0.0208 (15)
Geometric parameters (Å, º) top
Cd1—N22.2788 (15)C6—N21.467 (2)
Cd1—N2i2.2788 (15)C6—H6A0.9700
Cd1—O2Bi2.301 (16)C6—H6B0.9700
Cd1—O2B2.301 (16)N2—H10.838 (18)
Cd1—O2i2.386 (16)N2—H20.844 (18)
Cd1—O22.386 (16)C7—O11.252 (9)
Cd1—N12.5239 (13)C7—O21.276 (9)
Cd1—N1i2.5239 (13)C7—C81.511 (10)
C1—N11.482 (2)C8—H8A0.9600
C1—C21.501 (3)C8—H8B0.9600
C1—H1A0.9700C8—H8C0.9600
C1—H1B0.9700C7B—O1B1.236 (10)
C2—O31.417 (3)C7B—O2B1.275 (9)
C2—H2A0.9700C7B—C8B1.522 (9)
C2—H2B0.9700C8B—H8B10.9600
C3—O31.421 (3)C8B—H8B20.9600
C3—C41.512 (3)C8B—H8B30.9600
C3—H3A0.9700O4—H30.834 (17)
C3—H3B0.9700O4—H40.820 (19)
C4—N11.475 (2)O4—H4'0.827 (19)
C4—H4A0.9700O5—H50.838 (16)
C4—H4B0.9700O5—H60.823 (18)
C5—N11.481 (2)O5—H6'0.827 (19)
C5—C61.504 (3)O5B—H50.825 (17)
C5—H5A0.9700O5B—H60.838 (19)
C5—H5B0.9700O5B—H6'0.842 (19)
N2—Cd1—N2i180.0N1—C5—H5B109.0
N2—Cd1—O2Bi88.9 (4)C6—C5—H5B109.0
N2i—Cd1—O2Bi91.1 (4)H5A—C5—H5B107.8
N2—Cd1—O2B91.1 (4)N2—C6—C5110.33 (14)
N2i—Cd1—O2B88.9 (4)N2—C6—H6A109.6
O2Bi—Cd1—O2B180.0C5—C6—H6A109.6
N2—Cd1—O2i86.6 (4)N2—C6—H6B109.6
N2i—Cd1—O2i93.4 (4)C5—C6—H6B109.6
O2Bi—Cd1—O2i5.9 (8)H6A—C6—H6B108.1
O2B—Cd1—O2i174.1 (8)C4—N1—C5110.11 (14)
N2—Cd1—O293.4 (4)C4—N1—C1108.91 (14)
N2i—Cd1—O286.6 (4)C5—N1—C1107.85 (14)
O2i—Cd1—O2180.0C4—N1—Cd1113.82 (10)
N2—Cd1—N176.46 (5)C5—N1—Cd1100.13 (10)
N2i—Cd1—N1103.54 (5)C1—N1—Cd1115.51 (11)
O2Bi—Cd1—N189.6 (5)C6—N2—Cd1110.81 (11)
O2B—Cd1—N190.4 (5)C6—N2—H1107.4 (16)
O2i—Cd1—N194.4 (5)Cd1—N2—H1117.5 (16)
O2—Cd1—N185.6 (5)C6—N2—H2110.1 (16)
N2—Cd1—N1i103.54 (5)Cd1—N2—H2104.7 (15)
N2i—Cd1—N1i76.46 (5)H1—N2—H2106 (2)
O2i—Cd1—N1i85.6 (5)O1—C7—O2124.2 (10)
O2—Cd1—N1i94.4 (5)O1—C7—C8120.4 (9)
N1—Cd1—N1i180.0O2—C7—C8115.3 (9)
N1—C1—C2112.45 (16)C7—C8—H8A109.5
N1—C1—H1A109.1C7—C8—H8B109.5
C2—C1—H1A109.1H8A—C8—H8B109.5
N1—C1—H1B109.1C7—C8—H8C109.5
C2—C1—H1B109.1H8A—C8—H8C109.5
H1A—C1—H1B107.8H8B—C8—H8C109.5
O3—C2—C1111.52 (19)C7—O2—Cd1128.0 (11)
O3—C2—H2A109.3O1B—C7B—O2B126.0 (10)
C1—C2—H2A109.3O1B—C7B—C8B119.6 (9)
O3—C2—H2B109.3O2B—C7B—C8B114.4 (9)
C1—C2—H2B109.3C7B—C8B—H8B1109.5
H2A—C2—H2B108.0C7B—C8B—H8B2109.5
O3—C3—C4111.37 (18)H8B1—C8B—H8B2109.5
O3—C3—H3A109.4C7B—C8B—H8B3109.5
C4—C3—H3A109.4H8B1—C8B—H8B3109.5
O3—C3—H3B109.4H8B2—C8B—H8B3109.5
C4—C3—H3B109.4C7B—O2B—Cd1132.3 (10)
H3A—C3—H3B108.0C2—O3—C3109.06 (16)
N1—C4—C3110.44 (16)H3—O4—H4103 (3)
N1—C4—H4A109.6H3—O4—H4'102 (3)
C3—C4—H4A109.6H4—O4—H4'132 (7)
N1—C4—H4B109.6H5—O5—H6101 (3)
C3—C4—H4B109.6H5—O5—H6'101 (3)
H4A—C4—H4B108.1H6—O5—H6'137 (5)
N1—C5—C6113.08 (14)H5—O5B—H6101 (3)
N1—C5—H5A109.0H5—O5B—H6'100 (3)
C6—C5—H5A109.0H6—O5B—H6'132 (5)
N1—C1—C2—O356.0 (2)C2—C1—N1—C5171.48 (16)
O3—C3—C4—N159.6 (2)C2—C1—N1—Cd177.53 (18)
N1—C5—C6—N264.5 (2)C5—C6—N2—Cd141.77 (17)
C3—C4—N1—C5171.13 (15)O1—C7—O2—Cd118 (2)
C3—C4—N1—C153.06 (19)C8—C7—O2—Cd1163.7 (13)
C3—C4—N1—Cd177.39 (17)O1B—C7B—O2B—Cd118 (2)
C6—C5—N1—C473.18 (18)C8B—C7B—O2B—Cd1160.8 (14)
C6—C5—N1—C1168.10 (15)C1—C2—O3—C359.3 (2)
C6—C5—N1—Cd146.96 (16)C4—C3—O3—C261.5 (2)
C2—C1—N1—C452.0 (2)
Symmetry code: (i) x+1, y, z+1.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C4—H4B···O2Bi0.972.663.264 (19)121
C5—H5B···O1B0.972.633.425 (16)139
N2—H1···O4i0.84 (2)2.44 (2)3.096 (3)136 (2)
N2—H2···O10.84 (2)2.26 (2)3.009 (16)147 (2)
N2—H2···O1B0.84 (2)2.26 (3)2.993 (17)145 (2)
O4—H3···O20.83 (2)1.84 (3)2.661 (17)167 (4)
O4—H3···O2B0.83 (2)2.02 (3)2.837 (17)165 (3)
O4—H4···O5ii0.82 (5)2.06 (5)2.879 (7)178 (7)
O4—H4···O5Bii0.82 (5)2.05 (5)2.847 (18)165 (5)
O4—H4···O4iii0.83 (2)2.11 (3)2.917 (4)164 (6)
O5—H5···O10.84 (2)1.99 (2)2.828 (16)173 (3)
O5B—H5···O1B0.83 (2)1.93 (2)2.70 (2)155 (3)
O5—H6···O5iv0.82 (2)2.09 (3)2.895 (13)166 (5)
O5—H6···O5Biv0.82 (4)1.93 (5)2.75 (2)173 (5)
O5—H6···O4ii0.83 (2)2.07 (2)2.878 (5)168 (5)
O5B—H6···O4ii0.84 (2)2.07 (2)2.846 (17)154 (5)
Symmetry codes: (i) x+1, y, z+1; (ii) x+1, y+1, z; (iii) x+1, y, z; (iv) x+2, y+1, z.
 

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