In the title compound, [Ni(C
38H
38N
10)](NO
3)
2·2H
2O, the Ni
II ion is located on a crystallographic twofold rotation axis and is in a distorted octahedral coordination environment. The crystal structure is stablized by intermolecular N—H
O and C—H
O hydrogen bonds, and weak C—H
π interactions. The O atoms of the unique nitrate ion are disordered over two sites with occupancies of 0.63 (1) and 0.37 (1). In addition, the O atom of the unique solvent water molecule is disorded over two sites with equal occupancies.
Supporting information
CCDC reference: 709665
Key indicators
- Single-crystal X-ray study
- T = 292 K
- Mean (C-C) = 0.005 Å
- H-atom completeness 91%
- Disorder in solvent or counterion
- R factor = 0.056
- wR factor = 0.133
- Data-to-parameter ratio = 12.7
checkCIF/PLATON results
No syntax errors found
Alert level B
PLAT432_ALERT_2_B Short Inter X...Y Contact C9 .. O3' .. 2.91 Ang.
| Author Response: O3' is a minor component of disorder. Short C...O distances of
this sort are not unusual.
|
PLAT221_ALERT_4_B Large Solvent/Anion O Ueq(max)/Ueq(min) ... 5.00 Ratio
| Author Response: This is owing to the disoder of the O atoms of the nitrate ion
|
Alert level C
PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.56
PLAT410_ALERT_2_C Short Intra H...H Contact H2B .. H4B .. 1.90 Ang.
PLAT432_ALERT_2_C Short Inter X...Y Contact C5 .. O3' .. 2.95 Ang.
| Author Response: O3' is a minor component of disorder. Short C...O distances of
this sort are not unusual.
|
PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ?
| Author Response: H atoms of water molecules were not located or included
in the refinement but are included in the formula
|
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ?
PLAT164_ALERT_4_C Nr. of Refined C-H H-Atoms in Heavy-At Struct... 1
PLAT166_ALERT_4_C S.U's Given on Coordinates for calc-flagged .... H3A
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for N6
Alert level G
FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the
_chemical_formula_sum and the formula from the _atom_site* data.
Atom count from _chemical_formula_sum:C38 H42 N12 Ni1 O8
Atom count from the _atom_site data: C38 H38 N12 Ni1 O8
CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected.
CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional?
From the CIF: _cell_formula_units_Z 4
From the CIF: _chemical_formula_sum C38 H42 N12 Ni O8
TEST: Compare cell contents of formula and atom_site data
atom Z*formula cif sites diff
C 152.00 152.00 0.00
H 168.00 152.00 16.00
N 48.00 48.00 0.00
Ni 4.00 4.00 0.00
O 32.00 32.00 0.00
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 65
PLAT302_ALERT_4_G Anion/Solvent Disorder ......................... 44.00 Perc.
PLAT793_ALERT_4_G Check the Absolute Configuration of C3 ..... R
0 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
9 ALERT level C = Check and explain
6 ALERT level G = General alerts; check
5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
5 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
6 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
All reagents and solvents were used as obtained without further purification.
The ligand CTB was prepared according to literature methods (Hendriks et
al., 1982). Compound (I) was synthesized by refluxing
stoichiometric
quantities (1:1 molar ratio) of CTB (0.64 g, 1 mmol) and nickel(II) dinitrate
hexahydrate (0.29 g, 1 mmol) in 95% ethanol (30 ml) at 333 K for 6 h. The
solution was cooled to room temperature, filtered and evaporated to obtain the
product (yield 72%). Crystals of (I) were grown from an ethanol solution by
slow evaporation.
In (I), the nitrate O atoms are disordered over two positions with the final
refined occupancies of 0.63 (1):0.37 (1). Water atom O4 is also disordered over
two positions with both the occupancies being set to 0.5. H atoms bonded to
water molecules were not located and were not included in the refinement but
are included in the molecular formula. All H atoms (except for H3A) were
included in geometrical positions with C—H=0.97 Å (methylene), 0.93Å
(aromatic), 0.86Å (imine) and all the Uisovalues were set 1.2
times of their carrier atoms. The positional parameters of atom H3A were
refined.
Data collection: SMART (Bruker, 2007); cell refinement: SAINT-Plus (Bruker, 2007); data reduction: SAINT-Plus (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
[
N,
N,
N',
N'-Tetrakis(benzimidazol-2-
ylmethyl)cyclohexane-1,2-diamine]nickel(II) dinitrate dihydrate
top
Crystal data top
[Ni(C38H38N10)](NO3)2·2H2O | F(000) = 1784 |
Mr = 853.55 | Dx = 1.447 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2061 reflections |
a = 15.3395 (16) Å | θ = 2.4–22.1° |
b = 13.1695 (14) Å | µ = 0.57 mm−1 |
c = 19.606 (2) Å | T = 292 K |
β = 98.501 (2)° | Plate, purple |
V = 3917.2 (7) Å3 | 0.32 × 0.20 × 0.10 mm |
Z = 4 | |
Data collection top
Bruker SMART APEX CCD diffractometer | 3847 independent reflections |
Radiation source: fine-focus sealed tube | 2618 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.074 |
ϕ and ω scans | θmax = 26.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −18→17 |
Tmin = 0.840, Tmax = 0.946 | k = −10→16 |
10917 measured reflections | l = −24→24 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0618P)2] where P = (Fo2 + 2Fc2)/3 |
3847 reflections | (Δ/σ)max = 0.001 |
303 parameters | Δρmax = 0.43 e Å−3 |
65 restraints | Δρmin = −0.34 e Å−3 |
Crystal data top
[Ni(C38H38N10)](NO3)2·2H2O | V = 3917.2 (7) Å3 |
Mr = 853.55 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.3395 (16) Å | µ = 0.57 mm−1 |
b = 13.1695 (14) Å | T = 292 K |
c = 19.606 (2) Å | 0.32 × 0.20 × 0.10 mm |
β = 98.501 (2)° | |
Data collection top
Bruker SMART APEX CCD diffractometer | 3847 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2618 reflections with I > 2σ(I) |
Tmin = 0.840, Tmax = 0.946 | Rint = 0.074 |
10917 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.056 | 65 restraints |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | Δρmax = 0.43 e Å−3 |
3847 reflections | Δρmin = −0.34 e Å−3 |
303 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Ni1 | 0.0000 | 0.06922 (5) | 0.7500 | 0.0383 (2) | |
N1 | 0.08499 (16) | 0.1952 (2) | 0.79130 (13) | 0.0411 (7) | |
N2 | 0.03564 (16) | 0.0758 (2) | 0.65276 (12) | 0.0420 (7) | |
N3 | 0.01367 (17) | 0.1461 (2) | 0.54912 (12) | 0.0461 (7) | |
H3 | −0.0083 | 0.1852 | 0.5158 | 0.055* | |
N4 | −0.11459 (17) | −0.0078 (2) | 0.71196 (12) | 0.0419 (7) | |
N5 | −0.25584 (18) | 0.0113 (3) | 0.66910 (14) | 0.0552 (8) | |
H5 | −0.3063 | 0.0401 | 0.6586 | 0.066* | |
N6 | 0.8994 (3) | 0.3077 (5) | 0.4093 (3) | 0.139 (2) | |
O1 | 0.9736 (6) | 0.2879 (13) | 0.4445 (5) | 0.268 (8) | 0.630 (9) |
O2 | 0.8880 (3) | 0.3273 (6) | 0.3471 (3) | 0.119 (3) | 0.630 (9) |
O3 | 0.8392 (5) | 0.3165 (5) | 0.4456 (4) | 0.142 (3) | 0.630 (9) |
O1' | 0.9621 (5) | 0.2465 (7) | 0.4281 (4) | 0.058 (3) | 0.370 (9) |
O2' | 0.9055 (8) | 0.4029 (8) | 0.4173 (8) | 0.161 (7) | 0.370 (9) |
O3' | 0.8270 (19) | 0.2712 (14) | 0.377 (3) | 0.29 (12)* | 0.370 (9) |
O4 | 0.0215 (8) | 0.4055 (10) | 0.9433 (5) | 0.169 (6) | 0.50 (2) |
O4' | 0.0237 (12) | 0.491 (2) | 0.9646 (10) | 0.279 (12) | 0.50 (2) |
C1 | 0.0479 (3) | 0.4797 (3) | 0.7444 (2) | 0.0738 (12) | |
H1A | 0.0765 | 0.5412 | 0.7635 | 0.089* | |
H1B | 0.0512 | 0.4784 | 0.6954 | 0.089* | |
C2 | 0.0954 (2) | 0.3874 (3) | 0.7790 (2) | 0.0609 (10) | |
H2A | 0.1560 | 0.3873 | 0.7704 | 0.073* | |
H2B | 0.0958 | 0.3916 | 0.8284 | 0.073* | |
C3 | 0.0508 (2) | 0.2889 (3) | 0.75205 (18) | 0.0454 (8) | |
H3A | 0.063 (2) | 0.280 (2) | 0.7048 (16) | 0.054* | |
C4 | 0.0837 (2) | 0.2029 (3) | 0.86709 (16) | 0.0494 (9) | |
H4A | 0.1394 | 0.1790 | 0.8917 | 0.059* | |
H4B | 0.0767 | 0.2734 | 0.8795 | 0.059* | |
C5 | 0.1735 (2) | 0.1638 (3) | 0.77788 (18) | 0.0492 (9) | |
H5A | 0.2189 | 0.2039 | 0.8052 | 0.059* | |
H5B | 0.1787 | 0.1722 | 0.7295 | 0.059* | |
C6 | −0.0106 (2) | 0.1420 (3) | 0.61190 (15) | 0.0412 (8) | |
C7 | 0.0944 (2) | 0.0319 (3) | 0.61274 (15) | 0.0412 (8) | |
C8 | 0.1581 (2) | −0.0419 (3) | 0.62782 (19) | 0.0570 (10) | |
H8 | 0.1678 | −0.0735 | 0.6707 | 0.068* | |
C9 | 0.2069 (3) | −0.0668 (3) | 0.5766 (2) | 0.0644 (11) | |
H9 | 0.2502 | −0.1165 | 0.5852 | 0.077* | |
C10 | 0.1936 (3) | −0.0204 (3) | 0.51282 (19) | 0.0658 (11) | |
H10 | 0.2289 | −0.0386 | 0.4801 | 0.079* | |
C11 | 0.1299 (2) | 0.0515 (3) | 0.49675 (17) | 0.0561 (10) | |
H11 | 0.1204 | 0.0823 | 0.4536 | 0.067* | |
C12 | 0.0804 (2) | 0.0764 (3) | 0.54747 (15) | 0.0441 (8) | |
C13 | −0.1819 (2) | 0.0548 (3) | 0.70208 (16) | 0.0453 (8) | |
C14 | −0.2356 (2) | −0.0880 (3) | 0.65533 (18) | 0.0546 (10) | |
C15 | −0.2841 (3) | −0.1652 (4) | 0.6196 (2) | 0.0793 (14) | |
H15 | −0.3432 | −0.1566 | 0.6015 | 0.095* | |
C16 | −0.2408 (3) | −0.2551 (4) | 0.6122 (2) | 0.0862 (15) | |
H16 | −0.2710 | −0.3084 | 0.5883 | 0.103* | |
C17 | −0.1518 (3) | −0.2677 (3) | 0.6401 (2) | 0.0800 (14) | |
H17 | −0.1248 | −0.3298 | 0.6346 | 0.096* | |
C18 | −0.1031 (3) | −0.1913 (3) | 0.67524 (18) | 0.0601 (10) | |
H18 | −0.0439 | −0.2002 | 0.6931 | 0.072* | |
C19 | −0.1463 (2) | −0.1002 (3) | 0.68280 (16) | 0.0468 (9) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ni1 | 0.0387 (4) | 0.0453 (4) | 0.0307 (3) | 0.000 | 0.0044 (2) | 0.000 |
N1 | 0.0380 (15) | 0.0490 (17) | 0.0366 (14) | −0.0011 (13) | 0.0062 (11) | 0.0024 (13) |
N2 | 0.0414 (15) | 0.0507 (17) | 0.0342 (14) | 0.0041 (14) | 0.0066 (11) | 0.0015 (14) |
N3 | 0.0536 (17) | 0.0550 (18) | 0.0292 (14) | 0.0030 (15) | 0.0044 (12) | 0.0085 (13) |
N4 | 0.0433 (16) | 0.0469 (17) | 0.0347 (15) | −0.0039 (14) | 0.0028 (12) | −0.0051 (13) |
N5 | 0.0393 (17) | 0.071 (2) | 0.0544 (19) | −0.0096 (16) | 0.0027 (14) | 0.0030 (17) |
N6 | 0.087 (4) | 0.119 (5) | 0.203 (8) | 0.000 (4) | −0.007 (5) | 0.038 (5) |
O1 | 0.179 (10) | 0.317 (15) | 0.290 (14) | 0.021 (10) | −0.025 (9) | 0.206 (12) |
O2 | 0.079 (4) | 0.176 (7) | 0.097 (4) | 0.031 (4) | −0.003 (3) | 0.091 (5) |
O3 | 0.127 (6) | 0.125 (6) | 0.191 (7) | 0.023 (5) | 0.082 (5) | −0.025 (5) |
O1' | 0.052 (5) | 0.076 (6) | 0.044 (4) | 0.027 (4) | 0.005 (3) | 0.023 (4) |
O2' | 0.115 (9) | 0.170 (13) | 0.184 (13) | 0.027 (9) | −0.025 (8) | 0.000 (10) |
O4 | 0.239 (11) | 0.123 (10) | 0.149 (8) | 0.023 (7) | 0.043 (7) | −0.076 (6) |
O4' | 0.311 (17) | 0.28 (2) | 0.247 (17) | 0.064 (15) | 0.042 (12) | 0.007 (16) |
C1 | 0.084 (3) | 0.050 (2) | 0.088 (3) | −0.011 (2) | 0.013 (3) | −0.001 (2) |
C2 | 0.061 (2) | 0.053 (2) | 0.069 (3) | −0.011 (2) | 0.012 (2) | −0.003 (2) |
C3 | 0.0481 (19) | 0.045 (2) | 0.0440 (19) | −0.0006 (17) | 0.0101 (16) | 0.0002 (17) |
C4 | 0.047 (2) | 0.059 (2) | 0.0403 (19) | −0.0071 (18) | 0.0007 (15) | −0.0039 (17) |
C5 | 0.0388 (19) | 0.058 (2) | 0.050 (2) | −0.0037 (17) | 0.0064 (15) | 0.0022 (18) |
C6 | 0.0418 (18) | 0.047 (2) | 0.0339 (17) | −0.0018 (16) | 0.0043 (14) | −0.0007 (16) |
C7 | 0.0434 (18) | 0.047 (2) | 0.0335 (17) | −0.0016 (16) | 0.0075 (14) | −0.0021 (15) |
C8 | 0.060 (2) | 0.063 (3) | 0.049 (2) | 0.013 (2) | 0.0106 (18) | 0.0008 (19) |
C9 | 0.063 (2) | 0.073 (3) | 0.059 (2) | 0.017 (2) | 0.0133 (19) | −0.008 (2) |
C10 | 0.060 (3) | 0.094 (3) | 0.047 (2) | −0.002 (2) | 0.0188 (19) | −0.017 (2) |
C11 | 0.059 (2) | 0.075 (3) | 0.0358 (18) | −0.004 (2) | 0.0118 (17) | −0.0019 (19) |
C12 | 0.0461 (19) | 0.051 (2) | 0.0345 (17) | −0.0066 (18) | 0.0051 (14) | −0.0027 (16) |
C13 | 0.0402 (19) | 0.059 (2) | 0.0372 (18) | −0.0065 (18) | 0.0069 (14) | 0.0005 (17) |
C14 | 0.052 (2) | 0.068 (3) | 0.044 (2) | −0.016 (2) | 0.0081 (17) | 0.0011 (19) |
C15 | 0.073 (3) | 0.094 (4) | 0.069 (3) | −0.042 (3) | 0.005 (2) | −0.005 (3) |
C16 | 0.105 (4) | 0.079 (4) | 0.073 (3) | −0.048 (3) | 0.010 (3) | −0.014 (3) |
C17 | 0.121 (4) | 0.055 (3) | 0.067 (3) | −0.024 (3) | 0.023 (3) | −0.009 (2) |
C18 | 0.076 (3) | 0.058 (3) | 0.046 (2) | −0.008 (2) | 0.0063 (19) | −0.0029 (19) |
C19 | 0.057 (2) | 0.053 (2) | 0.0319 (17) | −0.0085 (18) | 0.0091 (15) | 0.0018 (16) |
Geometric parameters (Å, º) top
Ni1—N2 | 2.061 (2) | C2—H2B | 0.9700 |
Ni1—N2i | 2.062 (2) | C3—C3i | 1.549 (6) |
Ni1—N4 | 2.071 (3) | C3—H3A | 0.98 (3) |
Ni1—N4i | 2.071 (3) | C4—C6i | 1.485 (4) |
Ni1—N1i | 2.190 (3) | C4—H4A | 0.9700 |
Ni1—N1 | 2.190 (3) | C4—H4B | 0.9700 |
N1—C5 | 1.479 (4) | C5—C13i | 1.489 (5) |
N1—C4 | 1.493 (4) | C5—H5A | 0.9700 |
N1—C3 | 1.506 (4) | C5—H5B | 0.9700 |
N2—C6 | 1.318 (4) | C6—C4i | 1.485 (4) |
N2—C7 | 1.404 (4) | C7—C8 | 1.379 (5) |
N3—C6 | 1.339 (4) | C7—C12 | 1.395 (4) |
N3—C12 | 1.378 (4) | C8—C9 | 1.378 (5) |
N3—H3 | 0.8600 | C8—H8 | 0.9300 |
N4—C13 | 1.313 (4) | C9—C10 | 1.378 (5) |
N4—C19 | 1.400 (4) | C9—H9 | 0.9300 |
N5—C13 | 1.348 (4) | C10—C11 | 1.364 (5) |
N5—C14 | 1.379 (5) | C10—H10 | 0.9300 |
N5—H5 | 0.8600 | C11—C12 | 1.378 (4) |
N6—O2 | 1.233 (6) | C11—H11 | 0.9300 |
N6—O3 | 1.252 (6) | C13—C5i | 1.489 (5) |
N6—O2' | 1.265 (8) | C14—C15 | 1.387 (5) |
N6—O1' | 1.267 (7) | C14—C19 | 1.405 (5) |
N6—O1 | 1.268 (7) | C15—C16 | 1.375 (7) |
N6—O3' | 1.286 (9) | C15—H15 | 0.9300 |
O4'—O4'ii | 1.68 (4) | C16—C17 | 1.403 (6) |
C1—C1i | 1.519 (8) | C16—H16 | 0.9300 |
C1—C2 | 1.524 (5) | C17—C18 | 1.376 (5) |
C1—H1A | 0.9700 | C17—H17 | 0.9300 |
C1—H1B | 0.9700 | C18—C19 | 1.389 (5) |
C2—C3 | 1.524 (5) | C18—H18 | 0.9300 |
C2—H2A | 0.9700 | | |
| | | |
N2—Ni1—N2i | 175.20 (15) | C2—C3—C3i | 114.5 (2) |
N2—Ni1—N4 | 90.83 (10) | N1—C3—H3A | 106.6 (19) |
N2i—Ni1—N4 | 91.53 (10) | C2—C3—H3A | 106.6 (19) |
N2—Ni1—N4i | 91.53 (10) | C3i—C3—H3A | 106.6 (19) |
N2i—Ni1—N4i | 90.82 (10) | C6i—C4—N1 | 111.2 (3) |
N4—Ni1—N4i | 121.31 (16) | C6i—C4—H4A | 109.4 |
N2—Ni1—N1i | 81.44 (10) | N1—C4—H4A | 109.4 |
N2i—Ni1—N1i | 94.90 (10) | C6i—C4—H4B | 109.4 |
N4—Ni1—N1i | 79.11 (10) | N1—C4—H4B | 109.4 |
N4i—Ni1—N1i | 158.69 (11) | H4A—C4—H4B | 108.0 |
N2—Ni1—N1 | 94.90 (10) | N1—C5—C13i | 105.6 (3) |
N2i—Ni1—N1 | 81.43 (10) | N1—C5—H5A | 110.6 |
N4—Ni1—N1 | 158.69 (10) | C13i—C5—H5A | 110.6 |
N4i—Ni1—N1 | 79.11 (10) | N1—C5—H5B | 110.6 |
N1i—Ni1—N1 | 81.47 (14) | C13i—C5—H5B | 110.6 |
C5—N1—C4 | 110.1 (2) | H5A—C5—H5B | 108.8 |
C5—N1—C3 | 113.4 (2) | N2—C6—N3 | 112.8 (3) |
C4—N1—C3 | 113.5 (3) | N2—C6—C4i | 123.3 (3) |
C5—N1—Ni1 | 103.5 (2) | N3—C6—C4i | 123.8 (3) |
C4—N1—Ni1 | 108.93 (19) | C8—C7—C12 | 120.1 (3) |
C3—N1—Ni1 | 106.76 (18) | C8—C7—N2 | 131.6 (3) |
C6—N2—C7 | 105.4 (3) | C12—C7—N2 | 108.3 (3) |
C6—N2—Ni1 | 113.4 (2) | C9—C8—C7 | 117.1 (3) |
C7—N2—Ni1 | 141.2 (2) | C9—C8—H8 | 121.5 |
C6—N3—C12 | 107.6 (3) | C7—C8—H8 | 121.5 |
C6—N3—H3 | 126.2 | C8—C9—C10 | 122.2 (4) |
C12—N3—H3 | 126.2 | C8—C9—H9 | 118.9 |
C13—N4—C19 | 105.5 (3) | C10—C9—H9 | 118.9 |
C13—N4—Ni1 | 110.6 (2) | C11—C10—C9 | 121.4 (3) |
C19—N4—Ni1 | 142.9 (2) | C11—C10—H10 | 119.3 |
C13—N5—C14 | 107.4 (3) | C9—C10—H10 | 119.3 |
C13—N5—H5 | 126.3 | C10—C11—C12 | 116.8 (3) |
C14—N5—H5 | 126.3 | C10—C11—H11 | 121.6 |
O2—N6—O3 | 122.3 (5) | C12—C11—H11 | 121.6 |
O2—N6—O2' | 85.0 (9) | C11—C12—N3 | 131.8 (3) |
O3—N6—O2' | 83.4 (9) | C11—C12—C7 | 122.4 (3) |
O2—N6—O1' | 114.3 (7) | N3—C12—C7 | 105.8 (3) |
O3—N6—O1' | 119.1 (7) | N4—C13—N5 | 113.0 (3) |
O2'—N6—O1' | 123.7 (6) | N4—C13—C5i | 122.1 (3) |
O2—N6—O1 | 124.5 (6) | N5—C13—C5i | 124.8 (3) |
O3—N6—O1 | 112.8 (6) | N5—C14—C15 | 132.4 (4) |
O2'—N6—O1 | 95.3 (11) | N5—C14—C19 | 105.5 (3) |
O2'—N6—O3' | 118.3 (7) | C15—C14—C19 | 122.0 (4) |
O1'—N6—O3' | 117.9 (7) | C16—C15—C14 | 116.9 (4) |
O1—N6—O3' | 146.2 (13) | C16—C15—H15 | 121.5 |
C1i—C1—C2 | 110.1 (3) | C14—C15—H15 | 121.5 |
C1i—C1—H1A | 109.6 | C15—C16—C17 | 121.2 (5) |
C2—C1—H1A | 109.6 | C15—C16—H16 | 119.4 |
C1i—C1—H1B | 109.6 | C17—C16—H16 | 119.4 |
C2—C1—H1B | 109.6 | C18—C17—C16 | 122.3 (5) |
H1A—C1—H1B | 108.1 | C18—C17—H17 | 118.9 |
C3—C2—C1 | 111.4 (3) | C16—C17—H17 | 118.9 |
C3—C2—H2A | 109.4 | C17—C18—C19 | 116.9 (4) |
C1—C2—H2A | 109.4 | C17—C18—H18 | 121.6 |
C3—C2—H2B | 109.4 | C19—C18—H18 | 121.6 |
C1—C2—H2B | 109.4 | C18—C19—N4 | 130.6 (3) |
H2A—C2—H2B | 108.0 | C18—C19—C14 | 120.8 (4) |
N1—C3—C2 | 114.5 (3) | N4—C19—C14 | 108.5 (3) |
N1—C3—C3i | 107.3 (2) | | |
| | | |
N2—Ni1—N1—C5 | −55.5 (2) | Ni1—N1—C5—C13i | −44.1 (3) |
N2i—Ni1—N1—C5 | 127.6 (2) | C7—N2—C6—N3 | −0.9 (4) |
N4—Ni1—N1—C5 | −160.6 (2) | Ni1—N2—C6—N3 | 179.5 (2) |
N4i—Ni1—N1—C5 | 35.10 (19) | C7—N2—C6—C4i | 177.3 (3) |
N1i—Ni1—N1—C5 | −136.1 (2) | Ni1—N2—C6—C4i | −2.3 (4) |
N2—Ni1—N1—C4 | −172.7 (2) | C12—N3—C6—N2 | 0.9 (4) |
N2i—Ni1—N1—C4 | 10.5 (2) | C12—N3—C6—C4i | −177.3 (3) |
N4—Ni1—N1—C4 | 82.3 (3) | C6—N2—C7—C8 | −179.7 (4) |
N4i—Ni1—N1—C4 | −82.0 (2) | Ni1—N2—C7—C8 | −0.2 (6) |
N1i—Ni1—N1—C4 | 106.8 (2) | C6—N2—C7—C12 | 0.5 (4) |
N2—Ni1—N1—C3 | 64.4 (2) | Ni1—N2—C7—C12 | 180.0 (3) |
N2i—Ni1—N1—C3 | −112.4 (2) | C12—C7—C8—C9 | 1.3 (5) |
N4—Ni1—N1—C3 | −40.6 (3) | N2—C7—C8—C9 | −178.5 (3) |
N4i—Ni1—N1—C3 | 155.1 (2) | C7—C8—C9—C10 | 0.3 (6) |
N1i—Ni1—N1—C3 | −16.12 (14) | C8—C9—C10—C11 | −1.3 (6) |
N4—Ni1—N2—C6 | 74.0 (2) | C9—C10—C11—C12 | 0.8 (6) |
N4i—Ni1—N2—C6 | −164.6 (2) | C10—C11—C12—N3 | 178.2 (4) |
N1i—Ni1—N2—C6 | −4.9 (2) | C10—C11—C12—C7 | 0.8 (5) |
N1—Ni1—N2—C6 | −85.4 (2) | C6—N3—C12—C11 | −178.2 (4) |
N4—Ni1—N2—C7 | −105.4 (3) | C6—N3—C12—C7 | −0.5 (4) |
N4i—Ni1—N2—C7 | 15.9 (3) | C8—C7—C12—C11 | −1.9 (5) |
N1i—Ni1—N2—C7 | 175.7 (4) | N2—C7—C12—C11 | 178.0 (3) |
N1—Ni1—N2—C7 | 95.1 (3) | C8—C7—C12—N3 | −179.8 (3) |
N2—Ni1—N4—C13 | −98.7 (2) | N2—C7—C12—N3 | 0.0 (4) |
N2i—Ni1—N4—C13 | 77.1 (2) | C19—N4—C13—N5 | 0.4 (4) |
N4i—Ni1—N4—C13 | 169.0 (2) | Ni1—N4—C13—N5 | 171.9 (2) |
N1i—Ni1—N4—C13 | −17.6 (2) | C19—N4—C13—C5i | −176.2 (3) |
N1—Ni1—N4—C13 | 7.0 (4) | Ni1—N4—C13—C5i | −4.6 (4) |
N2—Ni1—N4—C19 | 67.7 (3) | C14—N5—C13—N4 | −0.7 (4) |
N2i—Ni1—N4—C19 | −116.5 (3) | C14—N5—C13—C5i | 175.7 (3) |
N4i—Ni1—N4—C19 | −24.6 (3) | C13—N5—C14—C15 | −175.8 (4) |
N1i—Ni1—N4—C19 | 148.8 (3) | C13—N5—C14—C19 | 0.7 (4) |
N1—Ni1—N4—C19 | 173.5 (3) | N5—C14—C15—C16 | 176.1 (4) |
C1i—C1—C2—C3 | 57.5 (5) | C19—C14—C15—C16 | 0.1 (6) |
C5—N1—C3—C2 | −73.2 (4) | C14—C15—C16—C17 | 0.4 (6) |
C4—N1—C3—C2 | 53.5 (4) | C15—C16—C17—C18 | −0.8 (7) |
Ni1—N1—C3—C2 | 173.5 (2) | C16—C17—C18—C19 | 0.7 (6) |
C5—N1—C3—C3i | 158.5 (3) | C17—C18—C19—N4 | −176.0 (3) |
C4—N1—C3—C3i | −74.8 (3) | C17—C18—C19—C14 | −0.1 (5) |
Ni1—N1—C3—C3i | 45.2 (3) | C13—N4—C19—C18 | 176.4 (3) |
C1—C2—C3—N1 | −171.0 (3) | Ni1—N4—C19—C18 | 9.6 (6) |
C1—C2—C3—C3i | −46.4 (5) | C13—N4—C19—C14 | 0.1 (3) |
C5—N1—C4—C6i | −126.7 (3) | Ni1—N4—C19—C14 | −166.7 (3) |
C3—N1—C4—C6i | 104.9 (3) | N5—C14—C19—C18 | −177.2 (3) |
Ni1—N1—C4—C6i | −13.8 (3) | C15—C14—C19—C18 | −0.3 (5) |
C4—N1—C5—C13i | 72.2 (3) | N5—C14—C19—N4 | −0.5 (4) |
C3—N1—C5—C13i | −159.4 (3) | C15—C14—C19—N4 | 176.5 (3) |
Symmetry codes: (i) −x, y, −z+3/2; (ii) −x, −y+1, −z+2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O1iii | 0.86 | 1.94 | 2.774 (10) | 165 |
N5—H5···O2iv | 0.86 | 2.14 | 2.923 (7) | 151 |
C4—H4B···O4 | 0.97 | 2.37 | 3.268 (12) | 154 |
C11—H11···Cg1v | 0.93 | 2.73 | 3.542 | 147 |
C16—H16···Cg2vi | 0.93 | 2.79 | 3.680 | 160 |
Symmetry codes: (iii) x−1, y, z; (iv) −x+1/2, −y+1/2, −z+1; (v) x+1/2, y+1/2, z+1; (vi) −x−1, −y−1, −z. |
Experimental details
Crystal data |
Chemical formula | [Ni(C38H38N10)](NO3)2·2H2O |
Mr | 853.55 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 292 |
a, b, c (Å) | 15.3395 (16), 13.1695 (14), 19.606 (2) |
β (°) | 98.501 (2) |
V (Å3) | 3917.2 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.57 |
Crystal size (mm) | 0.32 × 0.20 × 0.10 |
|
Data collection |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.840, 0.946 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10917, 3847, 2618 |
Rint | 0.074 |
(sin θ/λ)max (Å−1) | 0.617 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.133, 0.95 |
No. of reflections | 3847 |
No. of parameters | 303 |
No. of restraints | 65 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.34 |
Selected geometric parameters (Å, º) topNi1—N2 | 2.061 (2) | Ni1—N1 | 2.190 (3) |
Ni1—N4 | 2.071 (3) | | |
| | | |
N2—Ni1—N2i | 175.20 (15) | N4—Ni1—N1i | 79.11 (10) |
N2—Ni1—N4 | 90.83 (10) | N2—Ni1—N1 | 94.90 (10) |
N2—Ni1—N4i | 91.53 (10) | N4—Ni1—N1 | 158.69 (10) |
N2i—Ni1—N4i | 90.82 (10) | N1i—Ni1—N1 | 81.47 (14) |
N2—Ni1—N1i | 81.44 (10) | | |
Symmetry code: (i) −x, y, −z+3/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O1ii | 0.86 | 1.94 | 2.774 (10) | 164.7 |
N5—H5···O2iii | 0.86 | 2.14 | 2.923 (7) | 150.6 |
C4—H4B···O4 | 0.97 | 2.37 | 3.268 (12) | 153.6 |
C11—H11···Cg1iv | 0.93 | 2.727 | 3.542 | 146.8 |
C16—H16···Cg2v | 0.93 | 2.793 | 3.680 | 160.3 |
Symmetry codes: (ii) x−1, y, z; (iii) −x+1/2, −y+1/2, −z+1; (iv) x+1/2, y+1/2, z+1; (v) −x−1, −y−1, −z. |
N,N,N',N'-Tetrakis(2-benzimidazolymethyl) cyclohexane-1,2-diamine (CTB) is a polybenzimidazole ligand, which has the advantage that the basicity of the coordinating group approximates that of histidine (pKb: histidine = 7.96 and benzimidazole = 8.47; Main, 1992). Recently, studies of ligand CTB and its metal coordination compounds have been widely carried out (Li et al.,2005; Zhao et al., 2005). In a continuation of this work, the title compound, (I), was prepared as part of a series of syntheses to produce new benzimidazole derivatives. We report the crystal stucture of the title compound herein.
In the molecule structure of (I), the NiII ion is located on a crystallographic twofold rotation axis and is is coordinated by four benzimidazolyl(bzim) N atoms and two amino N atoms of the ligand CTB, in a distorted octahedral environment (Fig.1). The amino N atoms are slightly further away from the NiII ion than the benzimidazolyl N atoms. The Ni-N bond lengths are similar to the values reported in a related structure (Oki et al.,1996). As shown in Fig. 2, the crystal structure is stablized by intermolecular N—H···O, C—H···O hydrogen bonds and weak C—H···π interactions.