In the title compound, [Cu(C
16H
14N
4O)
2](C
6H
2N
3O
7)
2·4C
3H
7NO, the Cu
II ion is located on a crystallographic inversion center and is coordinated in a distorted octahedral environment by four N atoms and two O atoms forming two long Cu—O bonds. One of the unique dimethylformamide solvent molecules is disordered over two sites with occupancies of 0.715 (6) and 0.285 (6). The crystal structure is stabilized by intermolecular N—H
O hydrogen bonds.
Supporting information
CCDC reference: 711800
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.008 Å
- Disorder in solvent or counterion
- R factor = 0.075
- wR factor = 0.232
- Data-to-parameter ratio = 12.3
checkCIF/PLATON results
No syntax errors found
Alert level B
PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for N7
PLAT413_ALERT_2_B Short Inter XH3 .. XHn H12 .. H26D .. 2.01 Ang.
Alert level C
Value of measurement temperature given = 293.000
Value of melting point given = 0.000
PLAT220_ALERT_2_C Large Non-Solvent O Ueq(max)/Ueq(min) ... 2.61 Ratio
PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 8
PLAT031_ALERT_4_C Refined Extinction Parameter within Range ...... 3.00 Sigma
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 200 Deg.
PLAT234_ALERT_4_C Large Hirshfeld Difference C3 -- C4 .. 0.11 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference C4 -- C5 .. 0.12 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference O2 -- N5 .. 0.10 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference O5 -- N6 .. 0.13 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference N7 -- C21 .. 0.13 Ang.
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for C28
PLAT380_ALERT_4_C Check Incorrectly? Oriented X(sp2)-Methyl Moiety C27
PLAT736_ALERT_1_C H...A Calc 1.92(6), Rep 1.92(2) ...... 3.00 su-Ra
H4N -O9 1.555 2.666
Alert level G
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 18
PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K
PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
PLAT302_ALERT_4_G Anion/Solvent Disorder ......................... 33.00 Perc.
PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 5
O1 -CU -O1 -C9 8.00 0.00 2.566 1.555 1.555 1.555
PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 10
O1 -CU -O1 -C8 16.00 0.00 2.566 1.555 1.555 1.555
PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 13
N1 -CU -N1 -C7 4.00 0.00 2.566 1.555 1.555 1.555
PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 18
N1 -CU -N1 -C1 15.00 0.00 2.566 1.555 1.555 1.555
PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 21
N3 -CU -N3 -C10 15.00 0.00 2.566 1.555 1.555 1.555
PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 26
N3 -CU -N3 -C16 3.00 0.00 2.566 1.555 1.555 1.555
0 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
13 ALERT level C = Check and explain
10 ALERT level G = General alerts; check
5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
15 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
To a stirred solution of 1,3-bis(benzimidazol-2-yl)-2-oxopropane (0.139 g, 0.5 mmol) in hot MeOH (15 ml) was added Cu(C6H2N3O7)2 (0.130 g, 0.25 mmol) in MeOH (5 ml). A green crystalline product formed rapidly. The
precipitate was filtered off, washed with MeOH and absolute Et2O, and dried
in vacuo. The dried precipitate was dissolved in DMF resulting in a
green solution. The green crystals suitable for X-ray diffraction studies
were obtained by ether diffusion into DMF after three days at room
temperature.
Yield, 0.106 g (66%). (found: C, 49.23; H, 4.37; N,18.58.
Calcd. for C56H60N18O20Cu: C, 49.14; H, 4.42; N, 18.42)
All H atoms were found in difference electron maps and were subsequently refined
in a riding-model approximation with C—H distances ranging from 0.93 to 0.96 Å and Uiso(H) = 1.2 Ueq(C). The H atoms bonded to N atoms
were refined independently with the distance constraint of N-H = 0.86 (1)Å.
One of the unique DMF solvent molecules is disorderd over two sites with
refined occupancies 0.715 (6) and 0.285 (6). The minor component was refined
isotropically and constrained to be geometrically similar to the major
component using the SAME instruction in SHELXL (Sheldrick, 2008).
Data collection: RAPID-AUTO (Rigaku/MSC, 2004); cell refinement: RAPID-AUTO (Rigaku/MSC, 2004); data reduction: RAPID-AUTO (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Bis[1,3-bis(benzimidazol-2-yl)-2-oxapropane]copper(II)–picrate–dimethylformamide (1/2/4)
top
Crystal data top
[Cu(C16H14N4O)2](C6H2N3O7)2·4C3H7NO | Z = 1 |
Mr = 1368.77 | F(000) = 711 |
Triclinic, P1 | Dx = 1.506 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.9656 (7) Å | Cell parameters from 5605 reflections |
b = 12.6028 (12) Å | θ = 3.0–25.5° |
c = 13.4100 (9) Å | µ = 0.46 mm−1 |
α = 65.746 (2)° | T = 293 K |
β = 88.629 (2)° | Block, green |
γ = 65.187 (2)° | 0.28 × 0.21 × 0.11 mm |
V = 1508.8 (2) Å3 | |
Data collection top
Rigaku R-AXIS Spider diffractometer | 5605 independent reflections |
Radiation source: fine-focus sealed tube | 3363 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.078 |
ϕ and ω scans | θmax = 25.5°, θmin = 3.0° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −13→13 |
Tmin = 0.883, Tmax = 0.952 | k = −15→15 |
12429 measured reflections | l = −16→15 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.075 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.232 | w = 1/[σ2(Fo2) + (0.1327P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
5605 reflections | Δρmax = 0.78 e Å−3 |
457 parameters | Δρmin = −1.09 e Å−3 |
18 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.009 (3) |
Crystal data top
[Cu(C16H14N4O)2](C6H2N3O7)2·4C3H7NO | γ = 65.187 (2)° |
Mr = 1368.77 | V = 1508.8 (2) Å3 |
Triclinic, P1 | Z = 1 |
a = 10.9656 (7) Å | Mo Kα radiation |
b = 12.6028 (12) Å | µ = 0.46 mm−1 |
c = 13.4100 (9) Å | T = 293 K |
α = 65.746 (2)° | 0.28 × 0.21 × 0.11 mm |
β = 88.629 (2)° | |
Data collection top
Rigaku R-AXIS Spider diffractometer | 5605 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 3363 reflections with I > 2σ(I) |
Tmin = 0.883, Tmax = 0.952 | Rint = 0.078 |
12429 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.075 | 18 restraints |
wR(F2) = 0.232 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.78 e Å−3 |
5605 reflections | Δρmin = −1.09 e Å−3 |
457 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Cu | 0.0000 | 0.5000 | 0.5000 | 0.0414 (3) | |
O1 | 0.1409 (3) | 0.5704 (3) | 0.5882 (2) | 0.0445 (8) | |
O2 | −0.1106 (4) | 0.1849 (4) | 0.7815 (3) | 0.0747 (12) | |
O3 | −0.0335 (4) | −0.0186 (5) | 0.8206 (3) | 0.0701 (11) | |
O4 | 0.4289 (4) | −0.3097 (4) | 1.0041 (3) | 0.0651 (11) | |
O5 | 0.4919 (4) | −0.2964 (4) | 1.1479 (3) | 0.0816 (14) | |
O6 | 0.4312 (3) | −0.0496 (4) | 1.1048 (3) | 0.0577 (10) | |
O7 | 0.3068 (6) | 0.1965 (6) | 1.0630 (6) | 0.151 (3) | |
O8 | 0.1451 (5) | 0.3258 (4) | 0.9307 (4) | 0.0838 (13) | |
N1 | 0.1462 (3) | 0.3364 (4) | 0.6167 (3) | 0.0418 (9) | |
N2 | 0.3339 (4) | 0.2162 (4) | 0.7450 (3) | 0.0440 (10) | |
N3 | 0.1426 (3) | 0.5132 (4) | 0.4093 (3) | 0.0434 (10) | |
N4 | 0.3198 (4) | 0.5527 (5) | 0.3577 (3) | 0.0493 (10) | |
N5 | −0.0233 (4) | 0.0710 (6) | 0.8286 (3) | 0.0577 (12) | |
N6 | 0.4176 (4) | −0.2487 (5) | 1.0584 (3) | 0.0574 (12) | |
N7 | 0.2262 (4) | 0.2166 (5) | 0.9921 (3) | 0.0593 (12) | |
C1 | 0.1934 (4) | 0.2071 (5) | 0.6375 (4) | 0.0431 (11) | |
C2 | 0.1446 (5) | 0.1495 (5) | 0.5898 (4) | 0.0488 (12) | |
H2 | 0.0674 | 0.1994 | 0.5343 | 0.059* | |
C3 | 0.2141 (5) | 0.0169 (6) | 0.6273 (4) | 0.0561 (13) | |
H3 | 0.1823 | −0.0239 | 0.5980 | 0.067* | |
C4 | 0.3320 (5) | −0.0576 (6) | 0.7088 (4) | 0.0586 (14) | |
H4 | 0.3773 | −0.1471 | 0.7319 | 0.070* | |
C5 | 0.3832 (5) | −0.0029 (5) | 0.7558 (4) | 0.0490 (12) | |
H5 | 0.4619 | −0.0528 | 0.8098 | 0.059* | |
C6 | 0.3118 (4) | 0.1294 (5) | 0.7189 (3) | 0.0436 (11) | |
C7 | 0.2347 (4) | 0.3364 (5) | 0.6822 (4) | 0.0433 (12) | |
C8 | 0.2230 (4) | 0.4562 (5) | 0.6871 (4) | 0.0468 (12) | |
H8A | 0.1828 | 0.4627 | 0.7508 | 0.056* | |
H8B | 0.3134 | 0.4503 | 0.6965 | 0.056* | |
C9 | 0.2173 (4) | 0.6123 (5) | 0.5063 (4) | 0.0481 (12) | |
H9A | 0.3083 | 0.5841 | 0.5424 | 0.058* | |
H9B | 0.1733 | 0.7067 | 0.4674 | 0.058* | |
C10 | 0.2273 (4) | 0.5579 (5) | 0.4249 (4) | 0.0464 (12) | |
C11 | 0.2956 (4) | 0.5003 (5) | 0.2916 (4) | 0.0498 (13) | |
C12 | 0.3633 (5) | 0.4699 (6) | 0.2106 (4) | 0.0596 (15) | |
H12 | 0.4351 | 0.4895 | 0.1874 | 0.072* | |
C13 | 0.3170 (5) | 0.4088 (7) | 0.1670 (5) | 0.0686 (17) | |
H13 | 0.3598 | 0.3854 | 0.1134 | 0.082* | |
C14 | 0.2084 (5) | 0.3810 (6) | 0.2004 (4) | 0.0662 (16) | |
H14 | 0.1808 | 0.3396 | 0.1687 | 0.079* | |
C15 | 0.1411 (5) | 0.4134 (6) | 0.2791 (4) | 0.0564 (14) | |
H15 | 0.0686 | 0.3947 | 0.3014 | 0.068* | |
C16 | 0.1863 (4) | 0.4754 (5) | 0.3240 (4) | 0.0444 (11) | |
C17 | 0.0969 (4) | 0.0407 (5) | 0.8985 (4) | 0.0480 (12) | |
C18 | 0.2005 (5) | −0.0854 (5) | 0.9460 (4) | 0.0496 (13) | |
H18 | 0.1943 | −0.1493 | 0.9315 | 0.060* | |
C19 | 0.3118 (4) | −0.1151 (5) | 1.0143 (4) | 0.0496 (13) | |
C20 | 0.3311 (4) | −0.0229 (5) | 1.0410 (3) | 0.0456 (12) | |
C21 | 0.2194 (5) | 0.1088 (5) | 0.9812 (4) | 0.0472 (12) | |
C22 | 0.1076 (4) | 0.1381 (5) | 0.9134 (4) | 0.0488 (13) | |
H22 | 0.0392 | 0.2234 | 0.8776 | 0.059* | |
O9 | 0.5277 (3) | 0.3378 (4) | 0.6011 (3) | 0.0581 (10) | |
N8 | 0.5913 (4) | 0.1433 (4) | 0.6002 (3) | 0.0551 (12) | |
C23 | 0.6860 (5) | 0.0045 (5) | 0.6489 (4) | 0.0723 (18) | |
H23A | 0.7387 | −0.0147 | 0.5950 | 0.087* | |
H23B | 0.6355 | −0.0454 | 0.6710 | 0.087* | |
H23C | 0.7461 | −0.0176 | 0.7128 | 0.087* | |
C24 | 0.4876 (5) | 0.1923 (6) | 0.5051 (4) | 0.0651 (16) | |
H24A | 0.4192 | 0.2779 | 0.4908 | 0.078* | |
H24B | 0.4459 | 0.1350 | 0.5211 | 0.078* | |
H24C | 0.5295 | 0.1961 | 0.4408 | 0.078* | |
C25 | 0.6028 (5) | 0.2181 (5) | 0.6400 (4) | 0.0551 (14) | |
H25 | 0.6710 | 0.1799 | 0.7010 | 0.066* | |
O10 | 0.1119 (11) | 0.8119 (10) | 0.6125 (7) | 0.161 (4) | 0.715 (6) |
N9 | 0.1418 (5) | 0.6993 (7) | 0.7922 (6) | 0.068 (2) | 0.715 (6) |
C26 | 0.2883 (6) | 0.6379 (9) | 0.7915 (9) | 0.095 (4) | 0.715 (6) |
H26A | 0.3044 | 0.6737 | 0.7170 | 0.143* | 0.715 (6) |
H26B | 0.3205 | 0.5457 | 0.8187 | 0.143* | 0.715 (6) |
H26C | 0.3360 | 0.6541 | 0.8384 | 0.143* | 0.715 (6) |
C27 | 0.0966 (8) | 0.6585 (9) | 0.8996 (6) | 0.081 (3) | 0.715 (6) |
H27A | −0.0009 | 0.7062 | 0.8888 | 0.122* | 0.715 (6) |
H27B | 0.1386 | 0.6758 | 0.9493 | 0.122* | 0.715 (6) |
H27C | 0.1225 | 0.5670 | 0.9309 | 0.122* | 0.715 (6) |
C28 | 0.0578 (8) | 0.7873 (8) | 0.6984 (6) | 0.071 (3) | 0.715 (6) |
H28A | −0.0359 | 0.8292 | 0.6950 | 0.085* | 0.715 (6) |
O10A | 0.3069 (17) | 0.6919 (19) | 0.6726 (13) | 0.100* | 0.285 (6) |
N9A | 0.1822 (19) | 0.667 (3) | 0.8055 (15) | 0.100* | 0.285 (6) |
C26A | 0.303 (2) | 0.552 (2) | 0.8825 (17) | 0.100* | 0.285 (6) |
H26D | 0.3777 | 0.5331 | 0.8430 | 0.150* | 0.285 (6) |
H26E | 0.2838 | 0.4784 | 0.9143 | 0.150* | 0.285 (6) |
H26F | 0.3281 | 0.5688 | 0.9406 | 0.150* | 0.285 (6) |
C27A | 0.0588 (19) | 0.700 (3) | 0.8533 (19) | 0.100* | 0.285 (6) |
H27D | −0.0151 | 0.7755 | 0.7973 | 0.150* | 0.285 (6) |
H27E | 0.0739 | 0.7182 | 0.9135 | 0.150* | 0.285 (6) |
H27F | 0.0364 | 0.6282 | 0.8806 | 0.150* | 0.285 (6) |
C28A | 0.1935 (19) | 0.729 (2) | 0.7029 (14) | 0.100* | 0.285 (6) |
H28B | 0.1175 | 0.8016 | 0.6525 | 0.120* | 0.285 (6) |
H2N | 0.400 (4) | 0.199 (6) | 0.792 (4) | 0.08 (2)* | |
H4N | 0.374 (5) | 0.587 (5) | 0.357 (4) | 0.069 (18)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu | 0.0295 (4) | 0.0509 (6) | 0.0466 (5) | −0.0148 (4) | 0.0089 (3) | −0.0273 (4) |
O1 | 0.0332 (15) | 0.051 (2) | 0.0461 (17) | −0.0136 (15) | 0.0083 (14) | −0.0237 (16) |
O2 | 0.045 (2) | 0.073 (3) | 0.077 (3) | −0.011 (2) | −0.0100 (19) | −0.021 (2) |
O3 | 0.058 (2) | 0.081 (3) | 0.070 (2) | −0.029 (2) | −0.0037 (19) | −0.033 (2) |
O4 | 0.063 (2) | 0.059 (3) | 0.068 (2) | −0.0146 (19) | 0.0012 (18) | −0.037 (2) |
O5 | 0.081 (3) | 0.064 (3) | 0.064 (2) | −0.002 (2) | −0.032 (2) | −0.026 (2) |
O6 | 0.0501 (19) | 0.060 (2) | 0.0532 (19) | −0.0160 (17) | −0.0023 (16) | −0.0245 (18) |
O7 | 0.136 (5) | 0.082 (4) | 0.197 (6) | 0.010 (3) | −0.097 (5) | −0.082 (4) |
O8 | 0.084 (3) | 0.059 (3) | 0.088 (3) | −0.019 (2) | −0.011 (2) | −0.026 (2) |
N1 | 0.0338 (18) | 0.051 (3) | 0.047 (2) | −0.0186 (18) | 0.0123 (17) | −0.027 (2) |
N2 | 0.0352 (19) | 0.054 (3) | 0.044 (2) | −0.0163 (19) | 0.0124 (18) | −0.027 (2) |
N3 | 0.0315 (17) | 0.054 (3) | 0.045 (2) | −0.0156 (18) | 0.0086 (16) | −0.027 (2) |
N4 | 0.0325 (19) | 0.058 (3) | 0.059 (2) | −0.019 (2) | 0.0144 (19) | −0.028 (2) |
N5 | 0.041 (2) | 0.080 (4) | 0.047 (2) | −0.023 (2) | 0.0048 (19) | −0.027 (3) |
N6 | 0.052 (2) | 0.059 (3) | 0.057 (2) | −0.015 (2) | 0.007 (2) | −0.032 (2) |
N7 | 0.051 (2) | 0.063 (3) | 0.048 (2) | −0.007 (2) | −0.002 (2) | −0.030 (2) |
C1 | 0.037 (2) | 0.055 (3) | 0.045 (2) | −0.021 (2) | 0.015 (2) | −0.029 (2) |
C2 | 0.043 (2) | 0.058 (3) | 0.048 (3) | −0.022 (2) | 0.012 (2) | −0.026 (3) |
C3 | 0.061 (3) | 0.063 (4) | 0.053 (3) | −0.030 (3) | 0.018 (3) | −0.033 (3) |
C4 | 0.067 (3) | 0.054 (4) | 0.059 (3) | −0.026 (3) | 0.025 (3) | −0.030 (3) |
C5 | 0.045 (2) | 0.058 (3) | 0.042 (2) | −0.015 (2) | 0.009 (2) | −0.028 (2) |
C6 | 0.037 (2) | 0.048 (3) | 0.041 (2) | −0.013 (2) | 0.013 (2) | −0.022 (2) |
C7 | 0.0260 (19) | 0.061 (3) | 0.042 (2) | −0.012 (2) | 0.0078 (18) | −0.030 (2) |
C8 | 0.039 (2) | 0.058 (3) | 0.044 (2) | −0.017 (2) | 0.002 (2) | −0.027 (2) |
C9 | 0.035 (2) | 0.059 (3) | 0.053 (3) | −0.021 (2) | 0.010 (2) | −0.028 (3) |
C10 | 0.031 (2) | 0.058 (3) | 0.053 (3) | −0.017 (2) | 0.009 (2) | −0.030 (2) |
C11 | 0.036 (2) | 0.057 (3) | 0.049 (3) | −0.011 (2) | 0.009 (2) | −0.027 (3) |
C12 | 0.043 (3) | 0.073 (4) | 0.062 (3) | −0.021 (3) | 0.021 (2) | −0.036 (3) |
C13 | 0.048 (3) | 0.096 (5) | 0.075 (3) | −0.024 (3) | 0.027 (3) | −0.059 (4) |
C14 | 0.057 (3) | 0.085 (5) | 0.070 (3) | −0.026 (3) | 0.021 (3) | −0.052 (3) |
C15 | 0.041 (2) | 0.070 (4) | 0.062 (3) | −0.021 (3) | 0.014 (2) | −0.038 (3) |
C16 | 0.031 (2) | 0.053 (3) | 0.047 (2) | −0.012 (2) | 0.0093 (19) | −0.027 (2) |
C17 | 0.038 (2) | 0.059 (3) | 0.043 (2) | −0.018 (2) | 0.008 (2) | −0.023 (2) |
C18 | 0.046 (3) | 0.064 (4) | 0.041 (2) | −0.027 (3) | 0.014 (2) | −0.023 (2) |
C19 | 0.040 (2) | 0.057 (3) | 0.043 (2) | −0.010 (2) | 0.005 (2) | −0.026 (2) |
C20 | 0.041 (2) | 0.052 (3) | 0.033 (2) | −0.013 (2) | 0.008 (2) | −0.017 (2) |
C21 | 0.047 (3) | 0.052 (3) | 0.043 (2) | −0.017 (2) | 0.016 (2) | −0.027 (2) |
C22 | 0.036 (2) | 0.058 (3) | 0.041 (2) | −0.010 (2) | 0.007 (2) | −0.022 (2) |
O9 | 0.0464 (18) | 0.070 (3) | 0.062 (2) | −0.0275 (19) | 0.0155 (17) | −0.032 (2) |
N8 | 0.038 (2) | 0.067 (3) | 0.052 (2) | −0.014 (2) | 0.0108 (18) | −0.028 (2) |
C23 | 0.055 (3) | 0.072 (4) | 0.070 (3) | −0.009 (3) | 0.013 (3) | −0.034 (3) |
C24 | 0.056 (3) | 0.077 (4) | 0.053 (3) | −0.018 (3) | 0.003 (3) | −0.032 (3) |
C25 | 0.038 (2) | 0.079 (4) | 0.055 (3) | −0.027 (3) | 0.015 (2) | −0.035 (3) |
O10 | 0.230 (12) | 0.138 (9) | 0.169 (9) | −0.105 (9) | 0.009 (9) | −0.091 (8) |
N9 | 0.016 (3) | 0.079 (5) | 0.137 (7) | −0.012 (3) | 0.021 (3) | −0.082 (5) |
C26 | 0.025 (3) | 0.086 (7) | 0.202 (13) | −0.011 (4) | 0.008 (5) | −0.102 (9) |
C27 | 0.082 (6) | 0.054 (6) | 0.077 (6) | −0.025 (5) | −0.019 (5) | −0.006 (5) |
C28 | 0.087 (6) | 0.078 (7) | 0.079 (6) | −0.055 (6) | 0.027 (5) | −0.046 (6) |
Geometric parameters (Å, º) top
Cu—N3 | 1.979 (3) | C13—C14 | 1.392 (8) |
Cu—N3i | 1.979 (3) | C13—H13 | 0.9300 |
Cu—N1 | 1.992 (4) | C14—C15 | 1.375 (6) |
Cu—N1i | 1.992 (4) | C14—H14 | 0.9300 |
Cu—O1i | 2.583 (3) | C15—C16 | 1.395 (7) |
Cu—O1 | 2.583 (3) | C15—H15 | 0.9300 |
O1—C9 | 1.427 (5) | C17—C22 | 1.373 (7) |
O1—C8 | 1.429 (5) | C17—C18 | 1.382 (7) |
O2—N5 | 1.227 (6) | C18—C19 | 1.363 (6) |
O3—N5 | 1.227 (6) | C18—H18 | 0.9300 |
O4—N6 | 1.230 (5) | C19—C20 | 1.440 (7) |
O5—N6 | 1.228 (5) | C20—C21 | 1.465 (7) |
O6—C20 | 1.244 (5) | C21—C22 | 1.366 (6) |
O7—N7 | 1.185 (5) | C22—H22 | 0.9300 |
O8—N7 | 1.199 (6) | O9—C25 | 1.248 (6) |
N1—C7 | 1.324 (5) | N8—C25 | 1.306 (6) |
N1—C1 | 1.387 (6) | N8—C23 | 1.461 (6) |
N2—C7 | 1.342 (6) | N8—C24 | 1.461 (5) |
N2—C6 | 1.386 (6) | C23—H23A | 0.9600 |
N2—H2N | 0.87 (5) | C23—H23B | 0.9600 |
N3—C10 | 1.329 (6) | C23—H23C | 0.9600 |
N3—C16 | 1.413 (5) | C24—H24A | 0.9600 |
N4—C10 | 1.339 (6) | C24—H24B | 0.9600 |
N4—C11 | 1.389 (6) | C24—H24C | 0.9600 |
N4—H4N | 0.87 (5) | C25—H25 | 0.9300 |
N5—C17 | 1.451 (6) | O10—C28 | 1.266 (7) |
N6—C19 | 1.451 (6) | N9—C28 | 1.309 (7) |
N7—C21 | 1.456 (7) | N9—C26 | 1.463 (6) |
C1—C2 | 1.395 (6) | N9—C27 | 1.468 (6) |
C1—C6 | 1.399 (6) | C26—H26A | 0.9600 |
C2—C3 | 1.373 (8) | C26—H26B | 0.9600 |
C2—H2 | 0.9300 | C26—H26C | 0.9600 |
C3—C4 | 1.397 (7) | C27—H27A | 0.9600 |
C3—H3 | 0.9300 | C27—H27B | 0.9600 |
C4—C5 | 1.374 (7) | C27—H27C | 0.9600 |
C4—H4 | 0.9300 | C28—H28A | 0.9300 |
C5—C6 | 1.372 (7) | O10A—C28A | 1.255 (8) |
C5—H5 | 0.9300 | N9A—C28A | 1.309 (7) |
C7—C8 | 1.490 (7) | N9A—C27A | 1.456 (7) |
C8—H8A | 0.9700 | N9A—C26A | 1.466 (7) |
C8—H8B | 0.9700 | C26A—H26D | 0.9600 |
C9—C10 | 1.489 (6) | C26A—H26E | 0.9600 |
C9—H9A | 0.9700 | C26A—H26F | 0.9600 |
C9—H9B | 0.9700 | C27A—H27D | 0.9600 |
C11—C16 | 1.380 (7) | C27A—H27E | 0.9600 |
C11—C12 | 1.394 (6) | C27A—H27F | 0.9600 |
C12—C13 | 1.381 (8) | C28A—H28B | 0.9300 |
C12—H12 | 0.9300 | | |
| | | |
N3—Cu—N3i | 180 | C14—C13—H13 | 118.8 |
N3—Cu—N1 | 87.55 (15) | C15—C14—C13 | 121.4 (5) |
N3i—Cu—N1 | 92.45 (15) | C15—C14—H14 | 119.3 |
N3—Cu—N1i | 92.45 (15) | C13—C14—H14 | 119.3 |
N3i—Cu—N1i | 87.55 (15) | C14—C15—C16 | 117.1 (5) |
N1—Cu—N1i | 180 | C14—C15—H15 | 121.5 |
N3—Cu—O1i | 106.54 (12) | C16—C15—H15 | 121.5 |
N3i—Cu—O1i | 73.46 (12) | C11—C16—C15 | 120.9 (4) |
N1—Cu—O1i | 106.14 (13) | C11—C16—N3 | 109.3 (4) |
N1i—Cu—O1i | 73.86 (13) | C15—C16—N3 | 129.7 (4) |
N3—Cu—O1 | 73.46 (12) | C22—C17—C18 | 121.3 (4) |
N3i—Cu—O1 | 106.54 (12) | C22—C17—N5 | 119.6 (5) |
N1—Cu—O1 | 73.86 (13) | C18—C17—N5 | 119.1 (5) |
N1i—Cu—O1 | 106.14 (13) | C19—C18—C17 | 119.2 (5) |
O1i—Cu—O1 | 180 | C19—C18—H18 | 120.4 |
C9—O1—C8 | 114.0 (3) | C17—C18—H18 | 120.4 |
C9—O1—Cu | 105.0 (2) | C18—C19—C20 | 124.5 (5) |
C8—O1—Cu | 104.8 (3) | C18—C19—N6 | 115.8 (5) |
C7—N1—C1 | 105.4 (4) | C20—C19—N6 | 119.7 (4) |
C7—N1—Cu | 122.5 (3) | O6—C20—C19 | 124.9 (4) |
C1—N1—Cu | 131.4 (3) | O6—C20—C21 | 123.4 (5) |
C7—N2—C6 | 108.1 (4) | C19—C20—C21 | 111.7 (4) |
C7—N2—H2N | 124 (4) | C22—C21—N7 | 117.0 (5) |
C6—N2—H2N | 128 (4) | C22—C21—C20 | 123.6 (5) |
C10—N3—C16 | 104.3 (4) | N7—C21—C20 | 119.4 (4) |
C10—N3—Cu | 123.2 (3) | C21—C22—C17 | 119.5 (5) |
C16—N3—Cu | 132.4 (3) | C21—C22—H22 | 120.3 |
C10—N4—C11 | 107.3 (4) | C17—C22—H22 | 120.3 |
C10—N4—H4N | 120 (4) | C25—N8—C23 | 120.4 (4) |
C11—N4—H4N | 133 (4) | C25—N8—C24 | 122.9 (4) |
O2—N5—O3 | 123.3 (4) | C23—N8—C24 | 116.7 (4) |
O2—N5—C17 | 118.3 (5) | N8—C23—H23A | 109.5 |
O3—N5—C17 | 118.4 (5) | N8—C23—H23B | 109.5 |
O5—N6—O4 | 122.7 (4) | H23A—C23—H23B | 109.5 |
O5—N6—C19 | 119.1 (4) | N8—C23—H23C | 109.5 |
O4—N6—C19 | 118.2 (4) | H23A—C23—H23C | 109.5 |
O7—N7—O8 | 120.8 (6) | H23B—C23—H23C | 109.5 |
O7—N7—C21 | 120.5 (5) | N8—C24—H24A | 109.5 |
O8—N7—C21 | 118.7 (4) | N8—C24—H24B | 109.5 |
N1—C1—C2 | 131.0 (4) | H24A—C24—H24B | 109.5 |
N1—C1—C6 | 109.6 (4) | N8—C24—H24C | 109.5 |
C2—C1—C6 | 119.4 (5) | H24A—C24—H24C | 109.5 |
C3—C2—C1 | 118.0 (4) | H24B—C24—H24C | 109.5 |
C3—C2—H2 | 121.0 | O9—C25—N8 | 124.0 (4) |
C1—C2—H2 | 121.0 | O9—C25—H25 | 118.0 |
C2—C3—C4 | 121.0 (5) | N8—C25—H25 | 118.0 |
C2—C3—H3 | 119.5 | C28—N9—C26 | 119.1 (6) |
C4—C3—H3 | 119.5 | C28—N9—C27 | 123.2 (5) |
C5—C4—C3 | 122.1 (5) | C26—N9—C27 | 117.7 (6) |
C5—C4—H4 | 118.9 | N9—C26—H26A | 109.5 |
C3—C4—H4 | 118.9 | N9—C26—H26B | 109.5 |
C6—C5—C4 | 116.4 (4) | H26A—C26—H26B | 109.5 |
C6—C5—H5 | 121.8 | N9—C26—H26C | 109.5 |
C4—C5—H5 | 121.8 | H26A—C26—H26C | 109.5 |
C5—C6—N2 | 132.3 (4) | H26B—C26—H26C | 109.5 |
C5—C6—C1 | 123.1 (5) | N9—C27—H27A | 109.5 |
N2—C6—C1 | 104.6 (4) | N9—C27—H27B | 109.5 |
N1—C7—N2 | 112.3 (5) | H27A—C27—H27B | 109.5 |
N1—C7—C8 | 123.6 (4) | N9—C27—H27C | 109.5 |
N2—C7—C8 | 124.1 (4) | H27A—C27—H27C | 109.5 |
O1—C8—C7 | 111.3 (3) | H27B—C27—H27C | 109.5 |
O1—C8—H8A | 109.4 | O10—C28—N9 | 116.0 (7) |
C7—C8—H8A | 109.4 | O10—C28—H28A | 122.0 |
O1—C8—H8B | 109.4 | N9—C28—H28A | 122.0 |
C7—C8—H8B | 109.4 | C28A—N9A—C27A | 126.2 (9) |
H8A—C8—H8B | 108.0 | C28A—N9A—C26A | 118.7 (8) |
O1—C9—C10 | 111.0 (4) | C27A—N9A—C26A | 115.1 (8) |
O1—C9—H9A | 109.4 | N9A—C26A—H26D | 109.5 |
C10—C9—H9A | 109.4 | N9A—C26A—H26E | 109.5 |
O1—C9—H9B | 109.4 | H26D—C26A—H26E | 109.5 |
C10—C9—H9B | 109.4 | N9A—C26A—H26F | 109.5 |
H9A—C9—H9B | 108.0 | H26D—C26A—H26F | 109.5 |
N3—C10—N4 | 113.2 (4) | H26E—C26A—H26F | 109.5 |
N3—C10—C9 | 123.3 (4) | N9A—C27A—H27D | 109.5 |
N4—C10—C9 | 123.5 (4) | N9A—C27A—H27E | 109.5 |
C16—C11—N4 | 106.0 (4) | H27D—C27A—H27E | 109.5 |
C16—C11—C12 | 122.6 (5) | N9A—C27A—H27F | 109.5 |
N4—C11—C12 | 131.4 (5) | H27D—C27A—H27F | 109.5 |
C13—C12—C11 | 115.7 (5) | H27E—C27A—H27F | 109.5 |
C13—C12—H12 | 122.2 | O10A—C28A—N9A | 120.0 (10) |
C11—C12—H12 | 122.2 | O10A—C28A—H28B | 120.0 |
C12—C13—C14 | 122.3 (5) | N9A—C28A—H28B | 120.0 |
C12—C13—H13 | 118.8 | | |
| | | |
N3—Cu—O1—C9 | 15.0 (3) | C16—N3—C10—N4 | 0.2 (6) |
N3i—Cu—O1—C9 | −165.0 (3) | Cu—N3—C10—N4 | 177.0 (3) |
N1—Cu—O1—C9 | 107.2 (3) | C16—N3—C10—C9 | 178.4 (4) |
N1i—Cu—O1—C9 | −72.8 (3) | Cu—N3—C10—C9 | −4.8 (7) |
O1i—Cu—O1—C9 | −79 (100) | C11—N4—C10—N3 | 0.0 (6) |
N3—Cu—O1—C8 | −105.5 (3) | C11—N4—C10—C9 | −178.1 (5) |
N3i—Cu—O1—C8 | 74.5 (3) | O1—C9—C10—N3 | 19.8 (7) |
N1—Cu—O1—C8 | −13.2 (2) | O1—C9—C10—N4 | −162.2 (4) |
N1i—Cu—O1—C8 | 166.8 (2) | C10—N4—C11—C16 | −0.3 (5) |
O1i—Cu—O1—C8 | 161 (100) | C10—N4—C11—C12 | −177.8 (6) |
N3—Cu—N1—C7 | 76.3 (3) | C16—C11—C12—C13 | −2.1 (8) |
N3i—Cu—N1—C7 | −103.7 (3) | N4—C11—C12—C13 | 175.1 (5) |
N1i—Cu—N1—C7 | −42 (100) | C11—C12—C13—C14 | 0.9 (9) |
O1i—Cu—N1—C7 | −177.2 (3) | C12—C13—C14—C15 | 0.1 (10) |
O1—Cu—N1—C7 | 2.8 (3) | C13—C14—C15—C16 | 0.0 (9) |
N3—Cu—N1—C1 | −92.3 (4) | N4—C11—C16—C15 | −175.4 (4) |
N3i—Cu—N1—C1 | 87.7 (4) | C12—C11—C16—C15 | 2.4 (8) |
N1i—Cu—N1—C1 | 149 (100) | N4—C11—C16—N3 | 0.4 (6) |
O1i—Cu—N1—C1 | 14.2 (4) | C12—C11—C16—N3 | 178.2 (5) |
O1—Cu—N1—C1 | −165.8 (4) | C14—C15—C16—C11 | −1.2 (8) |
N3i—Cu—N3—C10 | 153 (100) | C14—C15—C16—N3 | −176.1 (5) |
N1—Cu—N3—C10 | −79.7 (4) | C10—N3—C16—C11 | −0.4 (5) |
N1i—Cu—N3—C10 | 100.3 (4) | Cu—N3—C16—C11 | −176.8 (3) |
O1i—Cu—N3—C10 | 174.2 (4) | C10—N3—C16—C15 | 175.0 (5) |
O1—Cu—N3—C10 | −5.8 (4) | Cu—N3—C16—C15 | −1.4 (8) |
N3i—Cu—N3—C16 | −31 (100) | O2—N5—C17—C22 | 2.5 (7) |
N1—Cu—N3—C16 | 96.1 (4) | O3—N5—C17—C22 | −176.7 (4) |
N1i—Cu—N3—C16 | −83.9 (4) | O2—N5—C17—C18 | −175.6 (4) |
O1i—Cu—N3—C16 | −10.0 (4) | O3—N5—C17—C18 | 5.3 (6) |
O1—Cu—N3—C16 | 170.0 (4) | C22—C17—C18—C19 | 3.9 (7) |
C7—N1—C1—C2 | −177.3 (4) | N5—C17—C18—C19 | −178.1 (4) |
Cu—N1—C1—C2 | −7.2 (7) | C17—C18—C19—C20 | −0.5 (7) |
C7—N1—C1—C6 | 1.0 (5) | C17—C18—C19—N6 | −178.4 (4) |
Cu—N1—C1—C6 | 171.1 (3) | O5—N6—C19—C18 | −152.7 (5) |
N1—C1—C2—C3 | 179.6 (4) | O4—N6—C19—C18 | 27.1 (7) |
C6—C1—C2—C3 | 1.5 (6) | O5—N6—C19—C20 | 29.3 (7) |
C1—C2—C3—C4 | −1.5 (7) | O4—N6—C19—C20 | −150.9 (4) |
C2—C3—C4—C5 | 0.6 (7) | C18—C19—C20—O6 | 178.7 (4) |
C3—C4—C5—C6 | 0.3 (7) | N6—C19—C20—O6 | −3.5 (7) |
C4—C5—C6—N2 | −178.4 (4) | C18—C19—C20—C21 | −2.9 (6) |
C4—C5—C6—C1 | −0.4 (7) | N6—C19—C20—C21 | 174.9 (4) |
C7—N2—C6—C5 | 178.2 (5) | O7—N7—C21—C22 | 167.0 (6) |
C7—N2—C6—C1 | −0.2 (4) | O8—N7—C21—C22 | −10.0 (7) |
N1—C1—C6—C5 | −179.0 (4) | O7—N7—C21—C20 | −13.8 (8) |
C2—C1—C6—C5 | −0.6 (7) | O8—N7—C21—C20 | 169.2 (4) |
N1—C1—C6—N2 | −0.5 (5) | O6—C20—C21—C22 | −178.2 (4) |
C2—C1—C6—N2 | 178.0 (4) | C19—C20—C21—C22 | 3.3 (6) |
C1—N1—C7—N2 | −1.1 (5) | O6—C20—C21—N7 | 2.6 (6) |
Cu—N1—C7—N2 | −172.3 (3) | C19—C20—C21—N7 | −175.8 (4) |
C1—N1—C7—C8 | −179.9 (4) | N7—C21—C22—C17 | 178.8 (4) |
Cu—N1—C7—C8 | 8.9 (6) | C20—C21—C22—C17 | −0.3 (7) |
C6—N2—C7—N1 | 0.8 (5) | C18—C17—C22—C21 | −3.5 (7) |
C6—N2—C7—C8 | 179.6 (4) | N5—C17—C22—C21 | 178.5 (4) |
C9—O1—C8—C7 | −94.6 (4) | C23—N8—C25—O9 | 178.3 (5) |
Cu—O1—C8—C7 | 19.7 (4) | C24—N8—C25—O9 | −0.3 (7) |
N1—C7—C8—O1 | −21.8 (6) | C26—N9—C28—O10 | 0.4 (13) |
N2—C7—C8—O1 | 159.6 (4) | C27—N9—C28—O10 | −179.7 (9) |
C8—O1—C9—C10 | 94.0 (4) | C27A—N9A—C28A—O10A | 178 (3) |
Cu—O1—C9—C10 | −20.2 (4) | C26A—N9A—C28A—O10A | −1 (5) |
Symmetry code: (i) −x, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O6ii | 0.87 (5) | 1.95 (4) | 2.709 (5) | 145 (6) |
N2—H2N···O5ii | 0.87 (5) | 2.41 (5) | 3.104 (6) | 138 (6) |
N4—H4N···O9iii | 0.87 (5) | 1.92 (2) | 2.753 (6) | 162 (5) |
Symmetry codes: (ii) −x+1, −y, −z+2; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data |
Chemical formula | [Cu(C16H14N4O)2](C6H2N3O7)2·4C3H7NO |
Mr | 1368.77 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 10.9656 (7), 12.6028 (12), 13.4100 (9) |
α, β, γ (°) | 65.746 (2), 88.629 (2), 65.187 (2) |
V (Å3) | 1508.8 (2) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.46 |
Crystal size (mm) | 0.28 × 0.21 × 0.11 |
|
Data collection |
Diffractometer | Rigaku R-AXIS Spider diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.883, 0.952 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12429, 5605, 3363 |
Rint | 0.078 |
(sin θ/λ)max (Å−1) | 0.606 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.075, 0.232, 1.02 |
No. of reflections | 5605 |
No. of parameters | 457 |
No. of restraints | 18 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.78, −1.09 |
Selected geometric parameters (Å, º) topCu—N3 | 1.979 (3) | Cu—O1 | 2.583 (3) |
Cu—N1 | 1.992 (4) | | |
| | | |
N3—Cu—N3i | 180 | N1—Cu—O1i | 106.14 (13) |
N3—Cu—N1 | 87.55 (15) | N3—Cu—O1 | 73.46 (12) |
N3—Cu—N1i | 92.45 (15) | N1—Cu—O1 | 73.86 (13) |
N1—Cu—N1i | 180 | O1i—Cu—O1 | 180 |
N3—Cu—O1i | 106.54 (12) | | |
Symmetry code: (i) −x, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O6ii | 0.87 (5) | 1.95 (4) | 2.709 (5) | 145 (6) |
N2—H2N···O5ii | 0.87 (5) | 2.41 (5) | 3.104 (6) | 138 (6) |
N4—H4N···O9iii | 0.87 (5) | 1.92 (2) | 2.753 (6) | 162 (5) |
Symmetry codes: (ii) −x+1, −y, −z+2; (iii) −x+1, −y+1, −z+1. |
The asymmetric unit of the title compound consists of half of a di[1,3-bis(benzimidazol-2-yl)-2-oxopropane] copper(II) cation (Fig.1), one picrate anion and two molecules of DMF. The CuII ion is six-coordinated with a N4O2 ligand set. The obb (1,3-bis(benzimidazol-2-yl)-2-oxopropane) ligand acts as a tridentate donor. The coordination geometry of the CuII may be best described as distorted octahedral. This geometry is assumed by the CuII to relieve the steric crowding. The equatorial plane is occupied by four N atoms of two benzimidazolyl groups. The axial positions are occuppied two O atoms. The crystal structure is stabilized by intermolecular N-H···O hydrogen bonds.