Download citation
Download citation
link to html
The di­hydro­benzo­diazole moiety is not quite planar while the whole mol­ecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. Chains of alternating mol­ecules and lattice water extending along the normal to (301) are formed by O—H...O and O—H...N hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989019016876/lh5940sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2056989019016876/lh5940Isup2.hkl
Contains datablock I

cdx

Chemdraw file https://doi.org/10.1107/S2056989019016876/lh5940Isup3.cdx
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2056989019016876/lh5940Isup4.cml
Supplementary material

CCDC reference: 1972575

Key indicators

  • Single-crystal X-ray study
  • T = 150 K
  • Mean [sigma](C-C) = 0.003 Å
  • R factor = 0.048
  • wR factor = 0.113
  • Data-to-parameter ratio = 13.9

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT906_ALERT_3_C Large K Value in the Analysis of Variance ...... 3.514 Check PLAT911_ALERT_3_C Missing FCF Refl Between Thmin & STh/L= 0.600 28 Report PLAT978_ALERT_2_C Number C-C Bonds with Positive Residual Density. 0 Info
Alert level G PLAT007_ALERT_5_G Number of Unrefined Donor-H Atoms .............. 2 Report PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 29 Note
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 3 ALERT level C = Check. Ensure it is not caused by an omission or oversight 2 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level A PUBL024_ALERT_1_A The number of authors is greater than 5. Please specify the role of each of the co-authors for your paper.
1 ALERT level A = Data missing that is essential or data in wrong format 0 ALERT level G = General alerts. Data that may be required is missing

Computing details top

Data collection: APEX3 (Bruker, 2016); cell refinement: SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016; program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXL2018 (Sheldrick, 2015b).

1-Benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)methyl]-2,3-dihydro-1H-1,3-benzodiazol-2-one monohydrate top
Crystal data top
C24H21N5O·H2OF(000) = 872
Mr = 413.47Dx = 1.325 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
a = 9.0872 (2) ÅCell parameters from 9060 reflections
b = 21.1012 (4) Åθ = 4.2–70.2°
c = 11.7134 (2) ŵ = 0.70 mm1
β = 112.654 (1)°T = 150 K
V = 2072.77 (7) Å3Plate, colourless
Z = 40.18 × 0.08 × 0.01 mm
Data collection top
Bruker D8 VENTURE PHOTON 100 CMOS
diffractometer
3887 independent reflections
Radiation source: INCOATEC IµS micro–focus source2909 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.057
Detector resolution: 10.4167 pixels mm-1θmax = 70.2°, θmin = 4.2°
ω scansh = 1110
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
k = 2425
Tmin = 0.85, Tmax = 0.99l = 1413
15080 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: mixed
wR(F2) = 0.113H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0367P)2 + 0.901P]
where P = (Fo2 + 2Fc2)/3
3887 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = 0.21 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) while those attached to oxygen were placed in locations derived from a difference map and their coordinates adjusted to give O—H = 0.87 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.85567 (15)0.39779 (7)0.93327 (13)0.0375 (4)
N10.58475 (17)0.39409 (7)0.89638 (14)0.0267 (3)
N20.68572 (18)0.48484 (7)0.86568 (14)0.0278 (3)
N30.3094 (2)0.22818 (9)0.68794 (17)0.0426 (5)
N40.4467 (2)0.21861 (8)0.67770 (16)0.0378 (4)
N50.55663 (19)0.25352 (8)0.76599 (15)0.0300 (4)
C10.5258 (2)0.49606 (9)0.84381 (16)0.0274 (4)
C20.4364 (2)0.55101 (10)0.81370 (18)0.0350 (5)
H20.4803980.5900410.8015400.042*
C30.2785 (3)0.54622 (11)0.80211 (19)0.0411 (5)
H30.2131950.5830080.7819730.049*
C40.2141 (2)0.48927 (12)0.8192 (2)0.0416 (5)
H40.1052430.4878170.8089610.050*
C50.3051 (2)0.43389 (11)0.85099 (18)0.0342 (5)
H50.2614240.3949020.8637120.041*
C60.4618 (2)0.43874 (9)0.86300 (16)0.0263 (4)
C70.7242 (2)0.42276 (9)0.90173 (17)0.0275 (4)
C80.5772 (2)0.32986 (9)0.93828 (18)0.0307 (4)
H8A0.5231470.3303640.9972570.037*
H8B0.6869950.3138960.9828300.037*
C90.4903 (2)0.28571 (9)0.83436 (17)0.0288 (4)
C100.3330 (2)0.26854 (10)0.7837 (2)0.0381 (5)
H100.2529570.2826300.8112110.046*
C110.7188 (2)0.25400 (10)0.77111 (19)0.0337 (5)
H11A0.7528810.2098100.7667040.040*
H11B0.7901880.2718310.8516130.040*
C120.7378 (2)0.29187 (9)0.66852 (17)0.0303 (4)
C130.6180 (3)0.32884 (10)0.58683 (19)0.0372 (5)
H130.5163420.3302550.5922040.045*
C140.6458 (3)0.36398 (11)0.4968 (2)0.0439 (5)
H140.5629510.3891010.4401570.053*
C150.7931 (3)0.36233 (12)0.4897 (2)0.0499 (6)
H150.8135710.3875480.4302650.060*
C160.9119 (3)0.32390 (14)0.5694 (2)0.0531 (7)
H161.0128850.3219230.5630170.064*
C170.8840 (3)0.28853 (12)0.6578 (2)0.0439 (6)
H170.9653240.2617790.7115550.053*
C180.8011 (2)0.53227 (10)0.86554 (18)0.0336 (5)
H18A0.9095560.5153380.9114130.040*
H18B0.7878000.5701130.9106270.040*
C190.7883 (2)0.55247 (9)0.73841 (17)0.0280 (4)
C200.7223 (3)0.51411 (11)0.6354 (2)0.0435 (5)
H200.6799630.4739240.6432460.052*
C210.7171 (3)0.53360 (12)0.5208 (2)0.0493 (6)
H210.6717870.5066840.4509370.059*
C220.7773 (3)0.59167 (12)0.5081 (2)0.0430 (5)
H220.7727140.6051820.4293940.052*
C230.8446 (3)0.63033 (11)0.6103 (2)0.0432 (5)
H230.8864870.6705360.6020070.052*
C240.8509 (2)0.61052 (10)0.7246 (2)0.0357 (5)
H240.8988750.6370780.7946660.043*
O20.10404 (17)0.18802 (8)0.44186 (14)0.0478 (4)
H2A0.1559220.1955190.5202490.072*
H2B0.0317070.1608580.4412580.072*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0242 (7)0.0395 (9)0.0441 (8)0.0055 (6)0.0078 (6)0.0002 (7)
N10.0247 (8)0.0244 (8)0.0286 (8)0.0013 (6)0.0077 (6)0.0006 (6)
N20.0259 (8)0.0263 (9)0.0283 (8)0.0016 (7)0.0072 (6)0.0013 (7)
N30.0363 (9)0.0486 (12)0.0454 (11)0.0144 (9)0.0184 (8)0.0126 (9)
N40.0385 (9)0.0358 (10)0.0409 (10)0.0099 (8)0.0174 (8)0.0081 (8)
N50.0306 (8)0.0291 (9)0.0316 (9)0.0037 (7)0.0132 (7)0.0018 (7)
C10.0267 (9)0.0319 (11)0.0206 (9)0.0029 (8)0.0059 (7)0.0007 (7)
C20.0430 (11)0.0328 (12)0.0277 (10)0.0085 (9)0.0120 (9)0.0036 (8)
C30.0438 (12)0.0442 (14)0.0339 (11)0.0195 (10)0.0134 (9)0.0054 (9)
C40.0303 (10)0.0591 (15)0.0360 (12)0.0118 (10)0.0132 (9)0.0009 (10)
C50.0302 (10)0.0429 (13)0.0311 (10)0.0015 (9)0.0135 (8)0.0007 (9)
C60.0255 (9)0.0303 (11)0.0215 (9)0.0024 (8)0.0071 (7)0.0011 (8)
C70.0232 (9)0.0302 (10)0.0252 (9)0.0006 (8)0.0050 (7)0.0023 (8)
C80.0345 (10)0.0279 (11)0.0280 (10)0.0011 (8)0.0101 (8)0.0026 (8)
C90.0309 (9)0.0272 (10)0.0297 (10)0.0018 (8)0.0132 (8)0.0019 (8)
C100.0350 (11)0.0409 (13)0.0416 (12)0.0073 (9)0.0182 (9)0.0083 (10)
C110.0288 (10)0.0375 (12)0.0362 (11)0.0025 (9)0.0138 (8)0.0018 (9)
C120.0303 (10)0.0318 (11)0.0283 (10)0.0052 (8)0.0108 (8)0.0047 (8)
C130.0401 (11)0.0333 (12)0.0401 (12)0.0026 (9)0.0177 (9)0.0022 (9)
C140.0584 (14)0.0363 (13)0.0350 (12)0.0035 (11)0.0159 (10)0.0016 (9)
C150.0679 (16)0.0510 (15)0.0377 (13)0.0150 (13)0.0279 (12)0.0003 (11)
C160.0404 (12)0.0785 (19)0.0447 (14)0.0136 (13)0.0211 (11)0.0002 (13)
C170.0313 (10)0.0601 (16)0.0386 (12)0.0021 (10)0.0115 (9)0.0025 (11)
C180.0328 (10)0.0340 (11)0.0296 (10)0.0092 (9)0.0070 (8)0.0023 (9)
C190.0240 (9)0.0285 (10)0.0309 (10)0.0005 (8)0.0099 (7)0.0008 (8)
C200.0551 (14)0.0388 (13)0.0352 (12)0.0153 (11)0.0159 (10)0.0061 (10)
C210.0625 (15)0.0503 (15)0.0340 (12)0.0167 (12)0.0173 (11)0.0101 (11)
C220.0454 (12)0.0512 (15)0.0351 (12)0.0047 (11)0.0188 (10)0.0023 (10)
C230.0494 (13)0.0384 (13)0.0491 (13)0.0075 (10)0.0272 (11)0.0008 (10)
C240.0376 (11)0.0323 (11)0.0393 (12)0.0052 (9)0.0171 (9)0.0062 (9)
O20.0397 (8)0.0618 (11)0.0395 (9)0.0154 (8)0.0128 (7)0.0018 (8)
Geometric parameters (Å, º) top
O1—C71.225 (2)C11—H11B0.9900
N1—C71.384 (2)C12—C131.381 (3)
N1—C61.397 (2)C12—C171.384 (3)
N1—C81.452 (2)C13—C141.390 (3)
N2—C71.379 (2)C13—H130.9500
N2—C11.395 (2)C14—C151.373 (3)
N2—C181.450 (2)C14—H140.9500
N3—N41.314 (2)C15—C161.385 (4)
N3—C101.358 (3)C15—H150.9500
N4—N51.347 (2)C16—C171.377 (3)
N5—C91.356 (2)C16—H160.9500
N5—C111.452 (2)C17—H170.9500
C1—C21.381 (3)C18—C191.510 (3)
C1—C61.397 (3)C18—H18A0.9900
C2—C31.392 (3)C18—H18B0.9900
C2—H20.9500C19—C201.383 (3)
C3—C41.384 (3)C19—C241.386 (3)
C3—H30.9500C20—C211.387 (3)
C4—C51.397 (3)C20—H200.9500
C4—H40.9500C21—C221.373 (3)
C5—C61.379 (3)C21—H210.9500
C5—H50.9500C22—C231.382 (3)
C8—C91.494 (3)C22—H220.9500
C8—H8A0.9900C23—C241.383 (3)
C8—H8B0.9900C23—H230.9500
C9—C101.368 (3)C24—H240.9500
C10—H100.9500O2—H2A0.8700
C11—C121.507 (3)O2—H2B0.8701
C11—H11A0.9900
O2···O1i2.865 (2)C10···H52.98
O2···C17i3.192 (3)C11···H8B2.90
O2···N32.892 (2)C14···H202.83
O1···H8B2.55C18···H22.98
O1···H11B2.81C22···H16vii2.98
O1···H18A2.56C22···H13vi2.97
O1···H18Aii2.87C23···H16vii2.97
O2···H5iii2.64H2···N4viii2.78
O2···H11Bi2.77H2A···N42.62
O2···H17i2.71H2A···N32.04
N4···C133.200 (3)H2B···O1i2.00
N2···H202.60H2B···H11Bi2.48
N4···H132.73H3···H15vi2.48
N5···H132.52H4···H18Aix2.57
C1···C203.557 (3)H5···H102.44
C2···C6iv3.542 (3)H8A···N4v2.67
C3···C7iv3.540 (3)H8B···H11B2.27
C5···C93.592 (3)H10···O2v2.48
C9···C53.592 (3)H10···H17ix2.46
C10···O2v3.402 (3)H11A···C15v2.92
C11···C15v3.421 (3)H11A···H172.51
C14···C203.505 (3)H16···H23vii2.44
C2···H18B2.98H16···H22vii2.46
C3···H15vi2.88H18A···H18Aii2.19
C8···H11B2.79H18B···H242.43
C8···H52.99H24···N3viii2.76
C7—N1—C6109.72 (15)N5—C11—H11B108.9
C7—N1—C8123.68 (15)C12—C11—H11B108.9
C6—N1—C8125.96 (15)H11A—C11—H11B107.7
C7—N2—C1109.90 (15)C13—C12—C17119.63 (19)
C7—N2—C18123.91 (16)C13—C12—C11123.39 (18)
C1—N2—C18125.82 (16)C17—C12—C11116.99 (18)
N4—N3—C10108.55 (17)C12—C13—C14120.1 (2)
N3—N4—N5107.17 (16)C12—C13—H13119.9
N4—N5—C9111.14 (15)C14—C13—H13119.9
N4—N5—C11118.44 (16)C15—C14—C13119.9 (2)
C9—N5—C11130.35 (17)C15—C14—H14120.1
C2—C1—N2131.12 (19)C13—C14—H14120.1
C2—C1—C6121.84 (18)C14—C15—C16120.0 (2)
N2—C1—C6106.99 (16)C14—C15—H15120.0
C1—C2—C3116.5 (2)C16—C15—H15120.0
C1—C2—H2121.7C17—C16—C15120.2 (2)
C3—C2—H2121.7C17—C16—H16119.9
C4—C3—C2121.7 (2)C15—C16—H16119.9
C4—C3—H3119.1C16—C17—C12120.1 (2)
C2—C3—H3119.1C16—C17—H17119.9
C3—C4—C5121.65 (19)C12—C17—H17119.9
C3—C4—H4119.2N2—C18—C19114.52 (15)
C5—C4—H4119.2N2—C18—H18A108.6
C6—C5—C4116.6 (2)C19—C18—H18A108.6
C6—C5—H5121.7N2—C18—H18B108.6
C4—C5—H5121.7C19—C18—H18B108.6
C5—C6—C1121.66 (18)H18A—C18—H18B107.6
C5—C6—N1131.39 (18)C20—C19—C24118.34 (19)
C1—C6—N1106.93 (15)C20—C19—C18122.54 (18)
O1—C7—N2127.11 (18)C24—C19—C18119.06 (17)
O1—C7—N1126.52 (18)C19—C20—C21120.8 (2)
N2—C7—N1106.37 (15)C19—C20—H20119.6
N1—C8—C9112.68 (15)C21—C20—H20119.6
N1—C8—H8A109.1C22—C21—C20120.2 (2)
C9—C8—H8A109.1C22—C21—H21119.9
N1—C8—H8B109.1C20—C21—H21119.9
C9—C8—H8B109.1C21—C22—C23119.6 (2)
H8A—C8—H8B107.8C21—C22—H22120.2
N5—C9—C10103.82 (17)C23—C22—H22120.2
N5—C9—C8125.29 (17)C22—C23—C24120.0 (2)
C10—C9—C8130.88 (18)C22—C23—H23120.0
N3—C10—C9109.31 (18)C24—C23—H23120.0
N3—C10—H10125.3C23—C24—C19121.0 (2)
C9—C10—H10125.3C23—C24—H24119.5
N5—C11—C12113.37 (16)C19—C24—H24119.5
N5—C11—H11A108.9H2A—O2—H2B103.2
C12—C11—H11A108.9
C10—N3—N4—N50.7 (2)C11—N5—C9—C10177.1 (2)
N3—N4—N5—C90.3 (2)N4—N5—C9—C8178.77 (17)
N3—N4—N5—C11176.95 (17)C11—N5—C9—C81.9 (3)
C7—N2—C1—C2175.59 (19)N1—C8—C9—N586.6 (2)
C18—N2—C1—C22.4 (3)N1—C8—C9—C1092.1 (3)
C7—N2—C1—C61.9 (2)N4—N3—C10—C90.9 (3)
C18—N2—C1—C6175.07 (17)N5—C9—C10—N30.7 (2)
N2—C1—C2—C3177.86 (19)C8—C9—C10—N3178.24 (19)
C6—C1—C2—C30.7 (3)N4—N5—C11—C1273.3 (2)
C1—C2—C3—C40.4 (3)C9—N5—C11—C12103.4 (2)
C2—C3—C4—C51.1 (3)N5—C11—C12—C137.5 (3)
C3—C4—C5—C60.8 (3)N5—C11—C12—C17172.44 (19)
C4—C5—C6—C10.2 (3)C17—C12—C13—C141.9 (3)
C4—C5—C6—N1178.04 (18)C11—C12—C13—C14178.1 (2)
C2—C1—C6—C51.0 (3)C12—C13—C14—C150.6 (3)
N2—C1—C6—C5178.79 (17)C13—C14—C15—C162.4 (4)
C2—C1—C6—N1177.65 (17)C14—C15—C16—C171.7 (4)
N2—C1—C6—N10.13 (19)C15—C16—C17—C120.8 (4)
C7—N1—C6—C5176.8 (2)C13—C12—C17—C162.6 (3)
C8—N1—C6—C55.8 (3)C11—C12—C17—C16177.4 (2)
C7—N1—C6—C11.7 (2)C7—N2—C18—C19109.6 (2)
C8—N1—C6—C1172.72 (16)C1—N2—C18—C1978.2 (2)
C1—N2—C7—O1176.56 (19)N2—C18—C19—C2024.7 (3)
C18—N2—C7—O13.2 (3)N2—C18—C19—C24158.15 (18)
C1—N2—C7—N12.9 (2)C24—C19—C20—C210.8 (3)
C18—N2—C7—N1176.23 (16)C18—C19—C20—C21178.0 (2)
C6—N1—C7—O1176.65 (18)C19—C20—C21—C220.2 (4)
C8—N1—C7—O15.4 (3)C20—C21—C22—C230.7 (4)
C6—N1—C7—N22.83 (19)C21—C22—C23—C240.1 (4)
C8—N1—C7—N2174.11 (16)C22—C23—C24—C191.0 (3)
C7—N1—C8—C9111.65 (19)C20—C19—C24—C231.4 (3)
C6—N1—C8—C978.5 (2)C18—C19—C24—C23178.7 (2)
N4—N5—C9—C100.2 (2)
Symmetry codes: (i) x1, y+1/2, z1/2; (ii) x+2, y+1, z+2; (iii) x, y+1/2, z1/2; (iv) x+1, y+1, z+2; (v) x, y+1/2, z+1/2; (vi) x+1, y+1, z+1; (vii) x+2, y+1, z+1; (viii) x+1, y+1/2, z+3/2; (ix) x1, y, z.
Hydrogen-bond geometry (Å, º) top
Cg is the centroid of the triazole ring C (C9/C10/N3–N5).
D—H···AD—HH···AD···AD—H···A
O2—H2A···N30.872.042.892 (2)166
O2—H2B···O1i0.872.002.865 (2)176
C10—H10···O2v0.952.483.402 (3)164
C13—H13···Cg0.952.833.451 (3)124
Symmetry codes: (i) x1, y+1/2, z1/2; (v) x, y+1/2, z+1/2.
Table 4. Comparison of the selected (X-ray and DFT) geometric data (Å, °) top
Bonds/anglesX-rayB3LYP/6-311G(d,p)
O1—C71.225 (2)1.25497
N1—C71.384 (2)1.40076
N1—C61.397 (2)1.40603
N1—C81.452 (2)1.46502
N2—C71.379 (2)1.39180
N2—C11.395 (2)1.40574
N2—C181.450 (2)1.47028
N3—N41.314 (2)1.32954
N3—C101.358 (3)1.37406
N4—N51.347 (2)1.38781
N5—C91.356 (2)1.37548
N5—C111.452 (2)1.47090
C7—N1—C6109.72 (15)109.64541
C7—N1—C8123.68 (15)122.59694
C6—N1—C8125.96 (15)127.83740
C7—N2—C1109.90 (15)109.86320
C7—N2—C18123.91 (16)122.77835
C1—N2—C18125.82 (16)128.23580
N4—N3—C10108.55 (17)108.75382
N3—N4—N5107.17 (16)107.07997
N4—N5—C9111.14 (15)110.25168
N4—N5—C11118.44 (16)118.90455
Calculated energies top
Molecular Energy (a.u.) (eV)Compound (I)
Total Energy, TE (eV)-34723.0011
EHOMO (eV)-6.1633
ELUMO (eV)-0.8166
Gap ΔE (eV)5.3468
Dipole moment, µ (Debye)5.5500
Ionisation potential I (eV)6.1633
Electron affinity, A0.8166
Electronegativity, χ3.4900
Hardness, η2.6734
Electrophilicity index, ω2.2780
Softness, σ0.3741
Fraction of electron transferred, ΔN0.6565
 

Follow Acta Cryst. E
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds